mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 37,250 | A→C | 18.6% | V192G (GTG→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 37,255 | A→C | 17.5% | G190G (GGT→GGG) | caiC ← | putative crotonobetaine/carnitine‑CoA ligase |
| RA | 71,870 | A→G | 15.5% | S174G (AGC→GGC) | yabI → | DedA family inner membrane protein |
| RA | 86,765 | A→G | 10.9% | E379G (GAG→GGG) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 86,769 | T→C | 7.3% | T380T (ACT→ACC) | ilvI → | acetolactate synthase 3 large subunit |
| RA | 115,063 | A→C | 8.4% | V221G (GTG→GGG) | hofC ← | assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 154,321 | A→C | 11.1% | V369G (GTC→GGC) | htrE ← | putative outer membrane usher protein |
| RA | 218,734 | T→G | 9.2% | T14T (ACA→ACC) | proS ← | prolyl‑tRNA synthetase |
| RA | 252,387 | G→A | 13.3% | K29K (AAG→AAA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 319,100 | T→A | 5.5% | Y301F (TAC→TTC) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 361,668 | C→T | 16.7% | E65K (GAA→AAA) | lacA ← | thiogalactoside acetyltransferase |
| RA | 361,728 | C→T | 14.1% | E45K (GAA→AAA) | lacA ← | thiogalactoside acetyltransferase |
| RA | 429,830 | T→G | 18.8% | V109G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 433,649 | T→G | 32.7% | G65G (GGT→GGG) | ribD → | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5‑amino‑6‑(5‑phosphoribosylamino) uracil reductase |
| RA | 437,444 | A→C | 18.6% | V231G (GTG→GGG) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 454,195 | T→G | 11.7% | intergenic (‑28/‑277) | yajG ← / → bolA | putative lipoprotein/stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC |
| JC JC | 458,790 | IS186 (–) +6 bp :: Δ1 bp | 80.5% | intergenic (+90/‑93) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| RA | 484,581 | A→C | 9.7% | W347G (TGG→GGG) | acrA ← | multidrug efflux system |
| RA | 598,428 | T→C | 19.1% | L317P (CTC→CCC) | cusB → | copper/silver efflux system, membrane fusion protein |
| RA | 649,330 | A→C | 11.0% | V81G (GTG→GGG) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| RA | 665,104 | A→C | 16.7% | S29R (AGT→AGG) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 759,427 | A→G | 14.8% | E241G (GAG→GGG) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 766,738 | A→G | 28.0% | E252G (GAG→GGG) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 825,248 | G→C | 21.3% | G287G (GGC→GGG) | ybhR ← | putative ABC transporter permease |
| RA | 861,108 | A→C | 16.4% | V500G (GTG→GGG) | ybiW ← | putative pyruvate formate lyase |
| RA | 871,360 | A→G | 19.1% | S132G (AGT→GGT) | gsiC → | glutathione ABC transporter permease |
| RA | 909,181 | A→G | 13.4% | A38A (GCT→GCC) | ltaE ← | L‑allo‑threonine aldolase, PLP‑dependent |
| RA | 956,640 | A→C | 15.4% | intergenic (‑8/‑122) | ycaO ← / → ycaP | ribosomal protein S12 methylthiotransferase accessory factor/UPF0702 family putative inner membrane protein |
| RA | 1,003,134 | T→G | 23.0% | C82W (TGT→TGG) | ycbU → | putative fimbriae protein |
| RA | 1,058,486 | T→C | 18.6% | S135P (TCG→CCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,123,777 | A→C | 13.0% | V93G (GTC→GGC) | grxB ← | glutaredoxin 2 (Grx2) |
| RA | 1,137,894 | T→C | 18.1% | L175P (CTC→CCC) | flgJ → | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| RA | 1,196,305 | C→T | 90.2% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,263,180 | G→T | 18.1% | D107E (GAC→GAA) | lolB ← | lipoprotein localization factor |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,357,427 | T→C | 10.1% | E81G (GAG→GGG) | ymjA ← | DUF2543 family protein |
| RA | 1,383,718 | C→A | 22.4% | E82* (GAA→TAA) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,589,069 | C→T | 19.9% | pseudogene (1011/1227 nt) | ydeT ← | pseudogene; putative outer membrane protein |
| RA | 1,616,835 | T→A | 16.5% | I358K (ATA→AAA) | yneK → | uncharacterized protein |
| RA | 1,639,706 | A→C | 12.1% | C118G (TGT→GGT) | rrrQ ← | Qin prophage; putative lysozyme |
| RA | 1,912,136 | A→C | 19.4% | G147G (GGT→GGG) | htpX ← | putative endopeptidase |
| RA | 1,915,574 | G→A | 5.1% | intergenic (‑40/+57) | proQ ← / ← msrC | RNA chaperone, putative ProP translation regulator/free methionine‑(R)‑sulfoxide reductase |
| RA | 1,921,260 | T→G | 11.9% | G346G (GGT→GGG) | rsmF → | 16S rRNA m(5)C1407 methyltransferase, SAM‑dependent |
| RA | 1,923,359 | A→T | 10.5% | intergenic (+45/+6) | ryeA → / ← yebY | novel sRNA, function unknown/DUF2511 family protein |
| JC JC | 1,936,520 | IS5 (–) +4 bp | 14.0% | intergenic (‑206/‑129) | zwf ← / → yebK | glucose‑6‑phosphate 1‑dehydrogenase/putative DNA‑binding transcriptional regulator |
| RA | 1,976,685 | T→C | 14.9% | E152G (GAG→GGG) | motA ← | proton conductor component of flagella motor |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,994,236 | A→C | 11.4% | S157R (AGT→AGG) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 2,120,560 | A→C | 11.2% | V332G (GTG→GGG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,145,868 | A→G | 9.9% | E868G (GAG→GGG) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,219,306 | A→C | 17.4% | V59G (GTG→GGG) | osmF ← | putative ABC transporter periplasmic binding protein |
| RA | 2,235,398 | T→G | 22.6% | V45G (GTG→GGG) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,349,405 | T→C | 9.2% | E23G (GAG→GGG) | inaA ← | acid‑inducible Kdo/WaaP family putative kinase |
| RA | 2,459,225 | T→C | 21.9% | G415G (GGA→GGG) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
| RA | 2,504,892 | A→C | 17.1% | V219G (GTG→GGG) | ypdE ← | aminopeptidase |
| RA | 2,513,129 | A→T | 9.2% | I30F (ATC→TTC) | nupC → | nucleoside (except guanosine) transporter |
| RA | 2,541,270 | T→C | 15.8% | E137G (GAG→GGG) | cysW ← | sulfate/thiosulfate ABC transporter permease |
| RA | 2,623,867 | T→G | 11.8% | V275G (GTG→GGG) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 2,704,841 | T→G | 12.3% | T157P (ACT→CCT) | lepB ← | leader peptidase (signal peptidase I) |
| RA | 2,739,684 | T→C | 13.0% | E129G (GAG→GGG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,777,459 | A→C | 14.5% | T3P (ACT→CCT) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,872,180 | A→C | 13.1% | V104G (GTG→GGG) | ispD ← | 4‑diphosphocytidyl‑2C‑methyl‑D‑erythritol synthase |
| RA | 2,877,027 | T→G | 15.1% | G149G (GGT→GGG) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,913,659 | T→C | 13.6% | intergenic (‑8/+40) | relA ← / ← rlmD | (p)ppGpp synthetase I/GTP pyrophosphokinase/23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| RA | 2,944,711 | A→G | 10.7% | E57G (GAG→GGG) | csdE → | CsdA‑binding activator; Fe‑S protein |
| RA | 2,952,350 | C→G | 12.9% | A38P (GCG→CCG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,967,845 | A→C | 19.2% | V197G (GTG→GGG) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 3,051,839 | A→C | 12.8% | V160G (GTG→GGG) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,062,718 | A→C | 13.6% | T623T (ACA→ACC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,141,137 | G→C | 15.6% | G50G (GGC→GGG) | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,206,452 | C→A | 17.3% | intergenic (‑196/‑11) | ttdR ← / → ttdA | transcriptional activator of ttdABT/L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,471 | C→G | 17.3% | S3R (AGC→AGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,483 | G→A | 16.8% | K7K (AAG→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,506 | C→A | 17.1% | T15K (ACA→AAA) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,209,180 | T→G | 14.0% | V386G (GTG→GGG) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,265,360 | T→C | 18.2% | G223G (GGA→GGG) | tdcB ← | L‑threonine dehydratase, catabolic |
| RA | 3,289,078 | C→A | 13.8% | Q89K (CAG→AAG) | yraJ → | putative outer membrane protein |
| RA | 3,317,603 | A→C | 13.0% | V135G (GTG→GGG) | rimP ← | ribosome maturation factor for 30S subunits |
| RA | 3,319,873 | A→C | 9.9% | T413P (ACT→CCT) | argG → | argininosuccinate synthetase |
| RA | 3,332,561 | T→C | 16.6% | R59G (AGG→GGG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,338,869 | T→C | 12.3% | E127G (GAG→GGG) | mlaE ← | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein |
| RA | 3,344,984 | A→C | 15.9% | T90P (ACC→CCC) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,395,441 | T→C | 11.8% | E273G (GAG→GGG) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,405,781 | T→G | 13.1% | C116G (TGC→GGC) | accB → | acetyl CoA carboxylase, BCCP subunit |
| RA | 3,416,434 | C→T | 17.7% | R468C (CGC→TGC) | acrF → | multidrug efflux system protein |
| RA | 3,438,597 | G→T | 6.6% | A18E (GCA→GAA) | arfA ← | alternate ribosome‑rescue factor A |
| RA | 3,439,039 | A→C | 11.2% | V31G (GTG→GGG) | zntR ← | zntA gene transcriptional activator |
| RA | 3,460,787 | T→C | 15.5% | F324S (TTC→TCC) | gspF → | general secretory pathway component, cryptic |
| RA | 3,480,296 | T→C | 21.1% | G104G (GGA→GGG) | kefB ← | potassium:proton antiporter |
| RA | 3,499,651 | G→T | 22.9% | intergenic (+36/‑259) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,499,694 | G→T | 11.7% | intergenic (+79/‑216) | yhfL → / → frlA | small lipoprotein/putative fructoselysine transporter |
| RA | 3,520,597 | A→C | 9.0% | V36G (GTG→GGG) | hofQ ← | DNA catabolic putative fimbrial transporter |
| RA | 3,536,135 | G→C | 22.2% | R150R (CGC→CGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| RA | 3,553,285 | T→G | 16.0% | G67G (GGT→GGG) | malT → | mal regulon transcriptional activator |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,638,228 | A→G | 17.5% | E196G (GAG→GGG) | pitA → | phosphate transporter, low‑affinity; tellurite importer |
| RA | 3,672,789 | A→G | 6.8% | S126G (AGT→GGT) | yhjC → | LysR family putative transcriptional regulator |
| RA | 3,686,539 | T→C | 10.9% | S879G (AGC→GGC) | bcsC ← | cellulose synthase subunit |
| RA | 3,699,212 | G→T | 13.4% | L333F (TTG→TTT) | bcsG → | DUF3260 family cellulose production inner membrane protein |
| RA | 3,749,429 | T→G | 18.8% | G66G (GGT→GGG) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 3,765,494 | T→G | 25.8% | S1104R (AGT→AGG) | rhsA → | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| RA | 3,784,900 | A→C | 12.9% | V39G (GTG→GGG) | yibN ← | putative rhodanese‑related sulfurtransferase |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,854,898 | A→G | 19.4% | E326G (GAG→GGG) | emrD → | multidrug efflux system protein |
| RA | 3,862,674 | C→A | 35.7% | pseudogene (930/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| RA | 3,862,677 | G→C | 26.2% | pseudogene (927/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| RA | 3,880,848 | A→G | 9.8% | L125P (CTC→CCC) | recF ← | gap repair protein |
| RA | 3,975,377 | A→G | 22.9% | S78G (AGC→GGC) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,975,383 | A→C | 19.4% | T80P (ACC→CCC) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,981,335 | A→G | 14.6% | E150G (GAG→GGG) | yifK → | putative APC family amino acid transporter |
| JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,013,577 | T→G | 12.1% | G175G (GGT→GGG) | metE → | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| RA | 4,046,374 | G→A | 8.9% | L77L (CTG→TTG) | yihG ← | inner membrane protein, inner membrane acyltransferase |
| RA | 4,065,571 | T→A | 17.1% | T66S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,072,425 | T→C | 8.8% | E76G (GAG→GGG) | yihT ← | 6‑deoxy‑6‑sulphofructose‑1‑phosphate aldolase |
| RA | 4,086,203 | A→G | 11.4% | E63G (GAG→GGG) | fdhD → | formate dehydrogenase formation protein |
| RA | 4,101,255 | C→T | 9.6% | S149F (TCT→TTT) | sodA → | superoxide dismutase, Mn |
| RA | 4,103,633 | A→C | 15.1% | V448G (GTG→GGG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,135,882 | T→G | 9.3% | V683G (GTG→GGG) | katG → | catalase‑peroxidase HPI, heme b‑containing |
| RA | 4,140,198 | T→G | 15.1% | H675P (CAC→CCC) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,192,034 | A→C | 17.6% | V201G (GTG→GGG) | thiG ← | thiamine biosynthesis ThiGH complex subunit |
| RA | 4,201,278 | A→C | 20.6% | G137G (GGT→GGG) | zraP ← | Zn‑dependent periplasmic chaperone |
| RA | 4,219,539 | C→T | 18.4% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,241,927 | T→A | 10.0% | T110S (ACC→TCC) | xylE ← | D‑xylose transporter |
| RA | 4,241,998 | T→C | 12.9% | D86G (GAT→GGT) | xylE ← | D‑xylose transporter |
| RA | 4,287,460 | C→A | 6.4% | intergenic (‑89/‑304) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,295,700 | T→G | 16.3% | V407G (GTG→GGG) | gltP → | glutamate/aspartate:proton symporter |
| RA | 4,296,060 | C→T | 20.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,317,498 | A→G | 14.9% | L133P (CTC→CCC) | phnL ← | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| RA | 4,319,404 | A→C | 11.7% | V68G (GTG→GGG) | phnJ ← | carbon‑phosphorus lyase, SAM‑dependent |
| RA | 4,331,615 | A→T | 13.3% | M372L (ATG→TTG) | proP → | proline/glycine betaine transporter |
| RA | 4,347,142 | A→G | 12.4% | L62P (CTC→CCC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,401,809 | A→G | 9.2% | R380G (AGA→GGA) | hflX → | GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator |
| RA | 4,424,136 | T→G | 12.5% | V146G (GTG→GGG) | ulaF → | L‑ribulose 5‑phosphate 4‑epimerase |
| RA | 4,429,997 | C→T | 15.8% | S45F (TCT→TTT) | cycA → | D‑alanine/D‑serine/glycine transporter |
| RA | 4,480,111 | C→T | 9.8% | L128F (CTC→TTC) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,487,250 | C→T | 9.9% | L345F (CTC→TTC) | lptF → | lipopolysaccharide export ABC permease |
| RA | 4,489,888 | A→C | 11.8% | V59G (GTG→GGG) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,502,617 | A→C | 12.2% | V272G (GTG→GGG) | insG ← | IS4 transposase |
| RA | 4,542,223 | C→T | 12.2% | R63C (CGC→TGC) | fimE → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,587,542 | A→G | 14.3% | G198G (GGA→GGG) | mrr → | methylated adenine and cytosine restriction protein |
| RA | 4,588,079 | A→C | 14.2% | W263G (TGG→GGG) | yjiA ← | metal‑binding GTPase |
| RA | 4,596,352 | T→G | 18.2% | S121R (AGT→AGG) | lgoD → | L‑galactonate oxidoreductase; L‑gulonate oxidoreductase |
| RA | 4,625,085 | T→G | 13.6% | V64G (GTG→GGG) | serB → | 3‑phosphoserine phosphatase |
| RA | 4,631,505 | A→G | 11.4% | E258G (GAG→GGG) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 299950 | 300198 | 249 | 25 [22] | [22] 25 | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | * | ÷ | NC_000913 | 583142 | 583744 | 603 | 25 [21] | [23] 24 | [appY] | [appY] |
| * | * | ÷ | NC_000913 | 1212034 | 1212545 | 512 | 26 [22] | [22] 24 | iraM/ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| * | * | ÷ | NC_000913 | 1812686 | 1812936 | 251 | 26 [22] | [23] 24 | ydjO | uncharacterized protein |
| * | * | ÷ | NC_000913 | 1978500 | 1979278 | 779 | 26 [23] | [5] 28 | insB1–insA | insB1,insA |
| * | * | ÷ | NC_000913 | 2455625 | 2456122 | 498 | 24 [22] | [18] 26 | [yfcV] | [yfcV] |
| * | * | ÷ | NC_000913 | 2469139 | 2469785 | 647 | 34 [20] | [21] 25 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | NC_000913 | 3653663 | 3653842 | 180 | 24 [23] | [22] 24 | [yhiS] | [yhiS] |
| * | * | ÷ | NC_000913 | 3798982 | 3799507 | 526 | 24 [20] | [12] 25 | [waaU]–[waaZ] | [waaU],[waaZ] |
| * | * | ÷ | NC_000913 | 4233747 | 4235542 | 1796 | 25 [23] | [23] 25 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 64 (0.670) | 3/432 | NT | 48.5% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 68 (0.710) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1207790 = | 29 (0.300) | 71 (0.800) | 53/400 | NT | 77.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 14 (0.160) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.300) | 58 (0.650) | 41/400 | NT | 74.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 14 (0.160) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 25 (0.270) | 21/424 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 23 (0.250) | 19/416 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||