mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 491 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 366,797 | 0 | G | A | 66.7% | 663.8 / inf | 589 | intergenic (‑54/+14) | lacI/mhpR | LacI/transcriptional regulator for mhp operon |
| * | NC_000913 | 246,747 | 0 | G | T | 66.2% | 409.8 / 206.4 | 323 | S12S (TCG→TCT) | yafL | putative lipoprotein |
| * | NC_000913 | 301,410 | 0 | C | T | 57.6% | 309.1 / inf | 513 | E130K (GAG→AAG) | yagT | putative xanthine dehydrogenase |
| * | NC_000913 | 244,133 | 0 | G | A | 54.9% | 158.3 / inf | 395 | intergenic (+12/‑194) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| * | NC_000913 | 207,482 | 0 | T | G | 54.2% | 7.5 / 40.0 | 49 | V786G (GTA→GGA) | dnaE | DNA polymerase III alpha subunit |
| * | NC_000913 | 3,192,873 | 0 | T | C | 53.4% | 16.0 / 183.7 | 148 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,891 | 0 | C | T | 51.9% | 45.9 / 183.4 | 159 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 312,767 | 0 | G | A | 46.0% | 34.2 / inf | 388 | intergenic (‑766/‑814) | ykgM/eaeH | putative ribosomal protein/attaching and effacing protein |
| * | NC_000913 | 3,192,626 | 0 | T | C | 45.0% | 86.4 / 194.5 | 181 | intergenic (+85/+335) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,907 | 0 | A | T | 44.3% | 58.4 / 222.8 | 183 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,625 | 0 | T | A | 44.1% | 77.6 / 203.5 | 180 | intergenic (+84/+336) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,609 | 0 | A | G | 43.8% | 95.9 / 197.4 | 185 | intergenic (+68/+352) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,757 | 0 | G | . | 43.5% | 268.3 / 290.1 | 171 | intergenic (+216/+204) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,905 | 0 | C | A | 43.3% | 25.8 / 197.0 | 181 | intergenic (+364/+56) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,635 | 0 | A | G | 43.1% | 104.4 / 198.7 | 189 | intergenic (+94/+326) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 4,086,235 | 0 | T | G | 43.1% | 45.2 / 45.7 | 72 | N401T (AAC→ACC) | frvR | putative frv operon regulatory protein |
| * | NC_000913 | 3,192,619 | 0 | A | C | 42.6% | 109.2 / 178.1 | 197 | intergenic (+78/+342) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 177,105 | 0 | T | G | 42.0% | 80.7 / 54.8 | 112 | T174P (ACA→CCA) | yadS | hypothetical protein |
| * | NC_000913 | 3,192,766 | 0 | A | G | 41.6% | 212.6 / 188.1 | 192 | intergenic (+225/+195) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,769 | 0 | G | T | 41.0% | 148.6 / 190.6 | 190 | intergenic (+228/+192) | b3051/b3052 | putative membrane protein/putative kinase |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244134 = | 181 (1.140) | 40 (0.260) +T |
11/148 | 11.3 | 18.3% | intergenic (+13/‑193) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | = 376715 | 180 (1.130) | intergenic (+180/+44) | yaiL/yaiM | nucleoprotein/polynucleotide‑associated enzyme/putative esterase | |||||
| * | ? | NC_000913 | = 731453 | NA (NA) | 7 (0.050) | 7/142 | 12.9 | NA | coding (2648/4194 nt) | rhsC | RhsC |
| ? | NC_000913 | = 731461 | NA (NA) | coding (2656/4194 nt) | rhsC | RhsC | |||||
| * | ? | NC_000913 | 261899 = | 444 (2.790) | 4 (0.030) | 4/126 | 13.8 | 1.1% | coding (1173/1254 nt) | proA | gamma‑glutamylphosphate reductase |
| ? | NC_000913 | 261911 = | 365 (2.740) | coding (1185/1254 nt) | proA | gamma‑glutamylphosphate reductase | |||||
| * | ? | NC_000913 | 4540250 = | 71 (0.450) | 4 (0.030) | 4/132 | 14.2 | 5.7% | intergenic (+49/‑433) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | 4540564 = | 71 (0.510) | intergenic (+363/‑119) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | 2622492 = | 87 (0.550) | 3 (0.020) | 3/126 | 14.6 | 3.9% | coding (1429/2067 nt) | ppk | polyphosphate kinase |
| ? | NC_000913 | 2622504 = | 75 (0.560) | coding (1441/2067 nt) | ppk | polyphosphate kinase | |||||
| * | ? | NC_000913 | = 359487 | 610 (3.840) | 7 (0.050) | 4/140 | 14.6 | 1.3% | coding (272/1155 nt) | cynX | CynX |
| ? | NC_000913 | 359506 = | 523 (3.530) | coding (291/1155 nt) | cynX | CynX | |||||
| * | ? | NC_000913 | 289082 = | 664 (4.180) | 5 (0.030) | 4/140 | 14.6 | 0.79% | coding (448/1005 nt) | argF | ornithine carbamoyltransferase 2 chain F |
| ? | NC_000913 | 289096 = | 635 (4.280) | coding (434/1005 nt) | argF | ornithine carbamoyltransferase 2 chain F | |||||
| * | ? | NC_000913 | = 278742 | NA (NA) | 5 (0.040) | 3/126 | 14.6 | NA | coding (164/504 nt) | insB2 | InsB |
| ? | NC_000913 | = 278730 | NA (NA) | coding (176/504 nt) | insB2 | InsB | |||||
| * | ? | NC_000913 | = 20151 | NA (NA) | 5 (0.040) | 3/126 | 14.6 | NA | coding (164/504 nt) | insB1 | InsB |
| ? | NC_000913 | = 278730 | NA (NA) | coding (176/504 nt) | insB2 | InsB | |||||
| * | ? | NC_000913 | 1366184 = | 126 (0.790) | 4 (0.030) | 4/142 | 14.7 | 3.3% | coding (82/669 nt) | pspA | phage shock protein |
| ? | NC_000913 | 1366205 = | 116 (0.770) | coding (103/669 nt) | pspA | phage shock protein | |||||