mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 19,965 | G→C | 7.7% | intergenic (+19/‑3) | pdxS → / → pdxT | glutamine amidotransferase for pyridoxal phosphate synthesis; pyridoxal 5'‑phosphate synthase complex, synthase subunit/glutamine amidotransferase for pyridoxal phosphate synthesis; pyridoxal 5'‑phosphate synthase complex, glutamine amidotransferase subunit PdxT |
| RA | BS168_reference_genome | 22,700 | T→G | 17.7% | Q150H (CAA→CAC) | dck ← | deoxyadenosine/deoxycytidine kinase |
| RA | BS168_reference_genome | 27,319 | G→T | 5.5% | R169I (AGA→ATA) | dnaX → | DNA polymerase III subunit tau subunit |
| RA | BS168_reference_genome | 66,187 | G→T | 21.0% | L457F (TTG→TTT) | yabM → | putative exporter |
| RA | BS168_reference_genome | 67,130 | G→T | 5.2% | E242D (GAG→GAT) | yabN → | putative fusion methylase and nucleotide pyrophosphohydrolase |
| RA | BS168_reference_genome | 95,851 | T→A | 27.4% | intergenic (+5/‑10) | trnJ‑Gly → / → trnJ‑Leu2 | tRNA‑Gly/tRNA‑Leu |
| RA | BS168_reference_genome | 96,240 | G→A | 7.4% | intergenic (+19/‑152) | trnJ‑Ala → / → rrnW‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 126,612 | A→T | 5.3% | K351* (AAA→TAA) | rpoC → | RNA polymerase (beta' subunit) |
| RA | BS168_reference_genome | 143,659 | C→T | 100% | S100F (TCT→TTT) | rpsE → | ribosomal protein S5 |
| RA | BS168_reference_genome | 165,749 | Δ1 bp | 100% | intergenic (+42/‑5) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,751 | Δ1 bp | 100% | intergenic (+44/‑3) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,825:1 | +C | 100% | noncoding (72/72 nt) | trnI‑Asn → | tRNA‑Asn |
| RA | BS168_reference_genome | 166,037:1 | +T | 100% | intergenic (+4/‑27) | trnI‑Gly → / → trnI‑Arg | tRNA‑Gly/tRNA‑Arg |
| RA | BS168_reference_genome | 166,344 | Δ1 bp | 100% | intergenic (+16/‑156) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 196,501 | T→G | 20.5% | F97V (TTT→GTT) | cdaA → | diadenylate cyclase |
| RA | BS168_reference_genome | 199,191 | A→C | 13.2% | N232T (AAC→ACC) | glmM → | phosphoglucosamine mutase |
| RA | BS168_reference_genome | 236,174 | G→T | 10.4% | R70S (AGG→AGT) | ybfA → | putative transcriptional regulator with acetyltransferase domain |
| RA | BS168_reference_genome | 272,231 | T→G | 25.9% | A144A (GCT→GCG) | gudD → | glucarate dehydratase |
| RA | BS168_reference_genome | 360,188 | A→C | 15.9% | L83R (CTG→CGG) | nasC ← | assimilatory nitrate reductase (catalytic subunit) |
| RA | BS168_reference_genome | 376,018 | Δ1 bp | 100% | intergenic (‑220/‑14) | hxlA ← / → hxlR | 3‑hexulose‑6‑phosphate synthase (HPS)/positive regulator of hxlAB expression (formaldehyde sensing) |
| RA | BS168_reference_genome | 557,865:1 | +T | 100% | intergenic (+416/‑8) | yddT → / → ydzN | putative exported phage protein/hypothetical protein |
| RA | BS168_reference_genome | 606,089 | A→G | 6.5% | P97P (CCT→CCC) | vmlR ← | ATP‑binding cassette efflux transporter |
| RA | BS168_reference_genome | 608,164 | C→A | 17.4% | intergenic (‑89/+82) | ydgF ← / ← dinB | putative amino acid permease/nuclease inhibitor |
| RA | BS168_reference_genome | 779,310 | A→G | 10.6% | N826S (AAC→AGC) | yetA → | putative enzyme |
| RA | BS168_reference_genome | 892,022 | A→T | 100% | N196I (AAT→ATT) | malR → | transcriptional activator of the Mal operon |
| RA | BS168_reference_genome | 944,586 | T→C | 100% | S34P (TCT→CCT) | perR → | transcriptional regulator (Fur family) |
| RA | BS168_reference_genome | 962,064 | A→C | 18.2% | N224T (AAC→ACC) | ssuB → | aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 977,627 | G→A | 5.1% | G187R (GGA→AGA) | yhbJ → | putative membrane fusion protein; putative exporter subunit (benzoate transcriptome) |
| RA | BS168_reference_genome | 1,023,150 | C→A | 28.1% | intergenic (+50/‑200) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,051,605 | T→A | 5.6% | N190Y (AAT→TAT) | spaD ← | spore coat associated protein |
| RA | BS168_reference_genome | 1,073,527 | G→C | 100% | S64C (TCT→TGT) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,139,565 | A→G | 8.3% | E1082E (GAA→GAG) | addB → | ATP‑dependent deoxyribonuclease (subunit B) |
| RA | BS168_reference_genome | 1,174,075 | A→T | 5.6% | D248V (GAT→GTT) | slpS → | 2‑phospho‑3‑sulfolactate synthase |
| RA | BS168_reference_genome | 1,176,993 | G→A | 5.6% | A87A (GCC→GCT) | yitG ← | putative efflux transporter |
| RA | BS168_reference_genome | 1,222,981 | C→G | 5.5% | P150R (CCT→CGT) | oppC → | oligopeptide ABC transporter (permease) |
| RA | BS168_reference_genome | 1,317,152:1 | +GT | 100% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,385,573 | C→A | 5.0% | P12P (CCG→CCT) | metE ← | cobalamin‑independent methionine synthase |
| RA | BS168_reference_genome | 1,424,639 | T→G | 8.1% | intergenic (‑205/+128) | mtnK ← / ← mtnU | methylthioribose kinase (methionine salvage pathway, promiscuous)/ketoglutaramate omega‑amidase |
| RA | BS168_reference_genome | 1,474,890 | C→T | 100% | L45L (TTG→TTA) | kre ← | regulator of transcription factor ComK function via modulation of mRNA stability |
| RA | BS168_reference_genome | 1,602,723 | C→T | 5.5% | R1147R (CGC→CGT) | bpr → | bacillopeptidase F |
| RA | BS168_reference_genome | 1,690,758 | C→A | 100% | R214S (CGT→AGT) | codY → | transcriptional regulator, GTP and BCAA‑dependent |
| RA | BS168_reference_genome | 2,097,080:1 | +A | 100% | intergenic (‑104/+46) | azoJ ← / ← yocK | FMN‑dependent NADH‑azoreductase/putative general stress protein |
| RA | BS168_reference_genome | 2,145,824 | C→A | 17.1% | M1F (TTG→TTT) † C77F (TGC→TTC) |
BSU_19745 ← yoyG ← |
conserved hypothetical protein putative toxin of a type I toxin family (sporulation operon) |
| RA | BS168_reference_genome | 2,271,424 | T→C | 100% | R78R (AGA→AGG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,505 | C→T | 100% | V51V (GTG→GTA) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,523 | A→C | 100% | D45E (GAT→GAG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,274,225 | T→C | 6.8% | K100E (AAA→GAA) | yokL ← | putative N‑acetyltransferase; phage SPbeta |
| RA | BS168_reference_genome | 2,301,634 | C→T | 6.8% | G269R (GGA→AGA) | ilvD ← | dihydroxy‑acid dehydratase |
| RA | BS168_reference_genome | 2,357,654 | T→A | 7.6% | T186T (ACA→ACT) | bshA ← | N‑acetyl‑alpha‑D‑glucosaminyl L‑malate synthase; malate glycosyltransferase for bacillithiol synthesis |
| RA | BS168_reference_genome | 2,360,680 | G→A | 6.0% | A17A (GCG→GCA) | ypjC → | putative integral inner membrane protein |
| RA | BS168_reference_genome | 2,362,105 | A→G | 6.7% | I78I (ATT→ATC) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,364,760 | A→G | 6.2% | S111S (AGT→AGC) | qcrA ← | menaquinol:cytochrome c oxidoreductase (iron‑sulfur subunit) |
| RA | BS168_reference_genome | 2,367,169 | G→A | 10.2% | A150A (GCC→GCT) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,367,180 | C→T | 10.0% | A147T (GCT→ACT) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,367,213 | C→T | 8.8% | V136I (GTT→ATT) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,367,214 | A→G | 9.0% | P135P (CCT→CCC) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,367,241 | C→T | 6.9% | Q126Q (CAG→CAA) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,368,719 | G→A | 6.3% | A174A (GCC→GCT) | aroA ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase (5‑enolpyruvoylshikimate‑3‑phosphate synthase) |
| RA | BS168_reference_genome | 2,382,141 | A→T | 7.6% | P275P (CCT→CCA) | hepT ← | heptaprenyl diphosphate synthase component II |
| RA | BS168_reference_genome | 2,382,153 | G→A | 7.2% | A271A (GCC→GCT) | hepT ← | heptaprenyl diphosphate synthase component II |
| RA | BS168_reference_genome | 2,382,177 | G→A | 6.6% | N263N (AAC→AAT) | hepT ← | heptaprenyl diphosphate synthase component II |
| RA | BS168_reference_genome | 2,382,180 | T→C | 5.5% | G262G (GGA→GGG) | hepT ← | heptaprenyl diphosphate synthase component II |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| RA | BS168_reference_genome | 2,480,646 | 2 bp→AT | 100% | intergenic (+21/+103) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,654 | Δ1 bp | 100% | intergenic (+29/+96) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,667 | Δ1 bp | 100% | intergenic (+42/+83) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,508,042 | A→G | 6.9% | G54G (GGT→GGC) | mmgF ← | 2‑methylisocitrate lyase |
| RA | BS168_reference_genome | 2,512,448 | G→A | 6.4% | T130I (ACA→ATA) | mmgB ← | 3‑hydroxybutyryl‑CoA dehydrogenase |
| RA | BS168_reference_genome | 2,581,726:1 | +T | 100% | intergenic (‑109/+45) | pstS ← / ← pbpA | phosphate ABC transporter (phosphate binding lipoprotein)/transpeptidase (penicillin‑binding protein 2A) |
| RA | BS168_reference_genome | 2,610,685 | C→T | 6.9% | V88I (GTC→ATC) | era ← | maturation of 16S RNA and assembly of 30S ribosomal subunit GTPase |
| RA | BS168_reference_genome | 2,635,354 | C→A | 7.0% | M86I (ATG→ATT) | gpr ← | spore germination protease |
| RA | BS168_reference_genome | 2,648,641 | A→G | 5.6% | F4S (TTT→TCT) | yqeF ← | putative lipoprotein; putative esterase |
| RA | BS168_reference_genome | 2,717,858 | G→A | 6.6% | A296T (GCT→ACT) | blt → | efflux transporter (promiscuous, acetylated polyamines efflux) |
| RA | BS168_reference_genome | 2,728,535 | A→T | 9.1% | intergenic (‑53/+112) | brnQ ← / ← azlD | low‑affinity branched‑chain amino acid transporter/branched‑chain amino acid / methionine exporter |
| RA | BS168_reference_genome | 2,756,537 | G→A | 5.9% | G76R (GGA→AGA) | adhA → | putative aldehyde dehydrogenase; carbonyl stress response |
| RA | BS168_reference_genome | 2,818,348 | G→T | 24.4% | P5Q (CCA→CAA) | yrzK ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,856,358 | T→C | 5.5% | K161R (AAA→AGA) | spoIVFB ← | membrane metalloprotease [proteolysis of pro‑sigma(K)] |
| RA | BS168_reference_genome | 2,871,202 | C→T | 5.2% | A516A (GCG→GCA) | spoVID ← | morphogenetic spore protein (stage VI sporulation) |
| RA | BS168_reference_genome | 3,016,944 | G→T | 10.0% | T231N (ACC→AAC) | ytxK ← | putative nucleic acid methyltransferase |
| RA | BS168_reference_genome | 3,059,481 | Δ1 bp | 9.2% | intergenic (‑80/+66) | ytnP ← / ← trmB | putative quorum‑quenching lactonase/tRNA (guanine‑N(7)‑)‑methyltransferase |
| RA | BS168_reference_genome | 3,059,482 | Δ1 bp | 100% | intergenic (‑81/+65) | ytnP ← / ← trmB | putative quorum‑quenching lactonase/tRNA (guanine‑N(7)‑)‑methyltransferase |
| RA | BS168_reference_genome | 3,116,898 | C→A | 10.1% | L23F (TTG→TTT) | ytrD ← | ABC transporter, permease component involved in resistance to cell wall inhibitors |
| RA | BS168_reference_genome | 3,236,265 | T→A | 16.1% | intergenic (+46/+157) | yuxK → / ← yufK | putative thiol‑disulfide oxidoreductase/putative integral membrane protein |
| RA | BS168_reference_genome | 3,349,360 | A→T | 7.3% | M115K (ATG→AAG) | frlN ← | fructose‑amino acid permease |
| RA | BS168_reference_genome | 3,368,850 | C→A | 25.0% | E389* (GAA→TAA) | fadA ← | acetyl‑CoA C‑acyltransferase |
| RA | BS168_reference_genome | 3,441,791 | A→G | 6.2% | V580A (GTC→GCC) | copA ← | copper transporter ATPase |
| RA | BS168_reference_genome | 3,511,543 | C→G | 10.4% | A255G (GCT→GGT) | lutP → | L‑lactate permease |
| RA | BS168_reference_genome | 3,658,834 | G→T | 36.9% | pseudogene (59/486 nt) | tuaAn ← | putative undecaprenyl‑phosphate N‑acetylgalactosaminyl‑1‑phosphate transferase; N‑terminal part of TuaA |
| RA | BS168_reference_genome | 3,701,855 | C→A | 6.8% | P149T (CCT→ACT) | rbsR → | ribose operon repressor (LacI family, D‑ribose) |
| RA | BS168_reference_genome | 3,755,184 | Δ1 bp | 6.7% | coding (108/1359 nt) | ywoD ← | putative efflux transporter |
| RA | BS168_reference_genome | 3,755,185 | Δ1 bp | 7.5% | coding (107/1359 nt) | ywoD ← | putative efflux transporter |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| RA | BS168_reference_genome | 3,827,054 | T→C | 7.6% | K964K (AAA→AAG) | narG ← | nitrate reductase (alpha subunit) |
| RA | BS168_reference_genome | 3,882,167 | A→T | 6.0% | intergenic (‑153/+24) | rocG ← / ← bslB | glutamate dehydrogenase/biofilm protein, member of the processed secretome contributing to biofilm hydrophobicity |
| RA | BS168_reference_genome | 3,907,393 | G→C | 30.3% | intergenic (‑79/‑451) | ywcI ← / → vpr | conserved protein of unknown function/extracellular serine protease |
| RA | BS168_reference_genome | 3,935,823 | Δ1 bp | 100% | intergenic (+35/+1) | ywbE → / ← rlmI | conserved protein of unknown function/large subunit ribosomal RNA m5C1962 methyltransferase |
| RA | BS168_reference_genome | 3,954,693 | A→G | 6.1% | K304R (AAG→AGG) | dltB → | putative D‑alanine transferase from DCP to undecaprenylphosphate for lipoteichoic acid and wall teichoic acid |
| RA | BS168_reference_genome | 3,961,614 | Δ1 bp | 5.9% | coding (261/309 nt) | licB ← | phosphotransferase system (PTS) lichenan‑specific enzyme IIB component |
| RA | BS168_reference_genome | 4,066,077 | A→G | 5.8% | intergenic (+115/‑133) | cotNE → / → yxeD | inner spore coat protein/conserved protein of unknown function |
| RA | BS168_reference_genome | 4,141,515 | A→G | 6.3% | intergenic (+41/+196) | phrG → / ← argI | secreted regulator of the activity of phosphatase RapG/arginase |
| RA | BS168_reference_genome | 4,153,115 | G→T | 100% | L192I (CTT→ATT) | walK ← | two‑component sensor histidine kinase [YycG] |
| RA | BS168_reference_genome | 4,155,390:1 | +A | 100% | intergenic (‑181/+43) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| RA | BS168_reference_genome | 4,201,544 | A→G | 6.3% | D510D (GAT→GAC) | yyaE ← | putative oxidoreductase (molybdoenzyme) |
| RA | Exported | 121 | G→C | 5.6% | intergenic (–/‑2857) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 131 | G→C | 6.8% | intergenic (–/‑2847) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 137 | A→C | 5.3% | intergenic (–/‑2841) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 1,922 | C→T | 100% | intergenic (–/‑1056) | – / → eryR | –//vntifkey=4 |
| JC | Exported | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –//vntifkey=4 |
| RA | Exported | 3,729 | T→G | 6.9% | intergenic (+14/‑142) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,735 | A→T | 9.7% | intergenic (+20/‑136) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,741 | G→T | 9.8% | intergenic (+26/‑130) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,743 | A→T | 5.6% | intergenic (+28/‑128) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,749 | A→T | 5.7% | intergenic (+34/‑122) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 3,783 | G→T | 5.2% | intergenic (+68/‑88) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| JC | Exported | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | /vntifkey=4//vntifkey=4 |
| RA | Exported | 4,625 | A→C | 6.2% | K252T (AAG→ACG) | ampR → | /vntifkey=4 |
| RA | Exported | 4,648 | T→A | 11.3% | Y260N (TAC→AAC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 4,649 | A→C | 9.8% | Y260S (TAC→TCC) ‡ | ampR → | /vntifkey=4 |
| RA | Exported | 5,049 | C→T | 100% | intergenic (+318/‑839) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,173 | T→G | 6.7% | intergenic (+442/‑715) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,302 | A→C | 5.8% | intergenic (+571/‑586) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 5,464 | T→G | 5.3% | intergenic (+733/‑424) | ampR → / → lacZalpha | /vntifkey=4//vntifkey=4 |
| RA | Exported | 6,006 | T→G | 6.2% | V40G (GTT→GGT) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,031 | A→C | 6.3% | A48A (GCA→GCC) | lacZalpha → | /vntifkey=4 |
| RA | Exported | 6,256 | A→C | 6.2% | intergenic (+45/–) | lacZalpha → / – | /vntifkey=4/– |
| RA | Exported | 6,277 | A→C | 5.7% | intergenic (+66/–) | lacZalpha → / – | /vntifkey=4/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 160970–161238 | 165598–164903 | 3666–4629 | 16 [15] | [13] 18 | [rrnI‑16S]–[rrnI‑5S] | [rrnI‑16S],rrnI‑23S,[rrnI‑5S] |
| * | * | ÷ | BS168_reference_genome | 166441–166703 | 176232–172979 | 6277–9792 | 17 [15] | [15] 16 | rrnH‑16S–[rrnG‑5S] | rrnH‑16S,rrnH‑23S,rrnH‑5S,rrnG‑16S,rrnG‑23S,[rrnG‑5S] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | 2152031 = | 58 (0.910) | 9 (0.160) | 9/200 | NT | 15.5% | pseudogene (406/420 nt) | spsMn | spore capsular polysaccharide biosynthesis enzyme fragment; N‑terminal part of SpsM |
| ? | BS168_reference_genome | = 2286432 | 48 (0.870) | intergenic (+24/‑16) | sprA/spsMc | serine‑type phage integrase; phage SPbeta/sporulation capsular polysaccharide biosynthesis enzyme C‑terminal end; restored upon phage SPbeta excision | |||||
| * | ? | BS168_reference_genome | = 2152046 | 61 (0.960) | 8 (0.150) | 8/200 | NT | 13.7% | intergenic (+1/+40) | spsMn/sprB | spore capsular polysaccharide biosynthesis enzyme fragment; N‑terminal part of SpsM/recombination directionality factor; phage SPbeta |
| ? | BS168_reference_genome | 2286449 = | 48 (0.870) | pseudogene (2/606 nt) | spsMc | sporulation capsular polysaccharide biosynthesis enzyme C‑terminal end; restored upon phage SPbeta excision | |||||
| * | ? | BS168_reference_genome | 2653329 = | 56 (0.880) | 30 (0.490) | 22/222 | NT | 45.3% | pseudogene (337/471 nt) | sigKn | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half) |
| ? | BS168_reference_genome | = 2701361 | 19 (0.310) | pseudogene (24/417 nt) | sigKc | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment) | |||||
| * | ? | BS168_reference_genome | = 2653333 | 56 (0.880) | 6 (0.100) | 6/222 | NT | 14.2% | pseudogene (341/471 nt) | sigKn | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half) |
| ? | BS168_reference_genome | 2701367 = | 19 (0.310) | pseudogene (30/417 nt) | sigKc | RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment) | |||||