mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 53,413 | G→A | 100% | intergenic (+45/‑94) | U712_00230 → / → U712_00235 | Protein sspF/4‑diphosphocytidyl‑2‑C‑methyl‑D‑erythritol kinase |
| RA | CP006881 | 69,170 | G→T | 21.1% | M1F (TTG→TTT) † | U712_00320 → | Cell division protein divIC |
| RA | CP006881 | 95,841 | T→G | 23.5% | noncoding (72/72 nt) | U712_20935 → | tRNA‑Gly |
| RA | CP006881 | 193,074 | T→A | 8.8% | intergenic (‑104/+6) | U712_00870 ← / ← U712_00875 | N‑acetylmuramic acid 6‑phosphate etherase/putative N‑acetyltransferase YbbJ |
| RA | CP006881 | 195,500 | G→A | 5.8% | E24K (GAA→AAA) | U712_00890 → | Anti‑sigma‑W factor rsiW |
| RA | CP006881 | 214,982 | C→T | 100% | A268V (GCC→GTC) | U712_00980 → | Uncharacterized protein skfB |
| RA | CP006881 | 230,497 | A→G | 11.0% | H323R (CAC→CGC) | U712_01065 → | Fatty‑acid peroxygenase |
| RA | CP006881 | 235,693 | G→A | 6.0% | G22R (GGG→AGG) | U712_01090 → | Uncharacterized protein ybeF |
| RA | CP006881 | 238,270 | G→T | 22.0% | Q22K (CAA→AAA) | U712_01105 ← | Uncharacterized protein ybfE |
| RA | CP006881 | 389,037 | T→G | 30.2% | A434A (GCT→GCG) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 389,998 | A→C | 14.3% | T755P (ACA→CCA) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 405,880 | C→A | 18.5% | L40F (TTG→TTT) | U712_01835 ← | putative transporter ycxC |
| RA | CP006881 | 540,762 | T→G | 13.7% | A135A (GCA→GCC) | U712_02610 ← | putative MFS‑type transporter ydeR |
| RA | CP006881 | 549,847 | T→G | 13.4% | K86N (AAA→AAC) | U712_02665 ← | Uncharacterized protein ydfG |
| RA | CP006881 | 604,266 | A→C | 7.5% | R191R (AGG→CGG) | U712_02955 → | Thiamine‑monophosphate kinase |
| RA | CP006881 | 644,574 | T→C | 6.9% | intergenic (‑76/+7) | U712_03155 ← / ← U712_03160 | Uncharacterized protein ydjO/AB hydrolase superfamily protein ydjP |
| RA | CP006881 | 673,296 | G→A | 7.5% | A39T (GCT→ACT) | U712_03295 → | Phosphoribosylamine‑‑glycine ligase |
| RA | CP006881 | 754,182 | A→C | 24.7% | K277N (AAA→AAC) | U712_03650 → | Putative oxidoreductase yetM |
| RA | CP006881 | 790,498 | G→T | 5.1% | V4F (GTT→TTT) | U712_03830 → | General stress protein 17M |
| RA | CP006881 | 821,427 | C→A | 5.7% | E323D (GAG→GAT) | U712_03970 ← | Trifunctional nucleotide phosphoesterase protein YfkN |
| RA | CP006881 | 867,829 | G→A | 5.4% | D312N (GAC→AAC) | U712_04205 → | Sensor histidine kinase yfiJ |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 948,353 | T→G | 21.0% | L140R (CTT→CGT) | U712_04645 → | putative lipoprotein yhcJ |
| RA | CP006881 | 1,027,772 | G→T | 5.7% | *420L (TGA→TTA) | U712_05035 → | Uncharacterized protein yhaP |
| RA | CP006881 | 1,034,938 | A→C | 20.4% | F5V (TTT→GTT) | U712_05070 ← | Hypothetical Protein |
| RA | CP006881 | 1,069,802 | C→G | 19.4% | A82G (GCG→GGG) | U712_05265 → | Putative quinone oxidoreductase YhfP |
| RA | CP006881 | 1,072,731 | C→T | 12.5% | P262P (CCG→CCA) | U712_05285 ← | Putative acetyl‑CoA C‑acetyltransferase yhfS |
| RA | CP006881 | 1,091,483:1 | +T | 100% | coding (1163/1326 nt) | U712_05390 ← | NTD biosynthesis operon protein ntdA |
| RA | CP006881 | 1,336,516 | T→G | 12.7% | S230A (TCT→GCT) | U712_06805 → | Flavohemoprotein |
| RA | CP006881 | 1,386,252 | A→T | 8.2% | V7D (GTT→GAT) | U712_07090 ← | Methylthioribose‑1‑phosphate isomerase |
| RA | CP006881 | 1,386,769 | T→C | 8.2% | H236R (CAT→CGT) | U712_07095 ← | Methylthioribose kinase |
| RA | CP006881 | 1,386,773 | A→T | 8.0% | L235M (TTG→ATG) | U712_07095 ← | Methylthioribose kinase |
| RA | CP006881 | 1,401,655 | Δ1 bp | 6.3% | coding (526/1044 nt) | U712_07165 → | putative membrane protein ykvI |
| RA | CP006881 | 1,401,656 | Δ1 bp | 6.3% | coding (527/1044 nt) | U712_07165 → | putative membrane protein ykvI |
| RA | CP006881 | 1,447,902 | A→G | 5.2% | K133K (AAA→AAG) | U712_07420 → | Uncharacterized protein ykuK |
| RA | CP006881 | 1,500,487 | T→A | 5.1% | N3K (AAT→AAA) | U712_07720 → | Inositol‑1‑monophosphatase |
| RA | CP006881 | 1,535,503 | T→G | 12.5% | V162G (GTT→GGT) | U712_07925 → | putative NTE family protein ylbK |
| RA | CP006881 | 1,554,182 | C→A | 6.3% | I276I (ATC→ATA) | U712_08015 → | Stage V sporulation protein E |
| RA | CP006881 | 1,622,598 | G→A | 8.3% | V211I (GTT→ATT) | U712_08340 → | putative L‑serine dehydratase, alpha chain |
| RA | CP006881 | 1,653,712 | G→A | 100% | A186T (GCA→ACA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,655,978 | Δ1 bp | 100% | coding (430/1596 nt) | U712_08515 → | Flagellar M‑ring protein |
| RA | CP006881 | 1,666,466 | G→T | 24.5% | E253* (GAA→TAA) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| RA | CP006881 | 1,678,431 | A→G | 6.0% | E17G (GAA→GGA) | U712_08640 → | CheY‑P phosphatase CheC |
| RA | CP006881 | 1,718,515 | T→C | 7.5% | F232L (TTC→CTC) | U712_08825 → | putative HTH‑type transcriptional regulator ymfC |
| RA | CP006881 | 1,819,007 | A→G | 5.8% | I1694V (ATT→GTT) | U712_09030 → | Polyketide synthase PksR |
| RA | CP006881 | 1,863,315 | A→G | 5.8% | T66T (ACA→ACG) | U712_09275 → | putative deoxyuridine 5'‑triphosphate nucleotidohydrolase yncF |
| RA | CP006881 | 1,863,333 | T→G | 5.3% | V72V (GTT→GTG) | U712_09275 → | putative deoxyuridine 5'‑triphosphate nucleotidohydrolase yncF |
| RA | CP006881 | 1,863,345 | T→C | 5.5% | N76N (AAT→AAC) | U712_09275 → | putative deoxyuridine 5'‑triphosphate nucleotidohydrolase yncF |
| RA | CP006881 | 1,951,400 | A→T | 18.5% | I224K (ATA→AAA) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 1,951,425 | A→C | 28.1% | S216A (TCT→GCT) | U712_09660 ← | D‑alanyl‑D‑alanine carboxypeptidase dacC |
| RA | CP006881 | 1,998,278 | T→G | 22.3% | L32R (CTT→CGT) | U712_09885 → | putative transporter yoaV |
| RA | CP006881 | 2,015,912 | T→G | 5.7% | I169I (ATA→ATC) | U712_09975 ← | Putative UV‑damage repair protein uvrX |
| RA | CP006881 | 2,015,935 | A→G | 5.8% | Y162H (TAT→CAT) | U712_09975 ← | Putative UV‑damage repair protein uvrX |
| RA | CP006881 | 2,015,978 | C→A | 6.7% | V147V (GTG→GTT) | U712_09975 ← | Putative UV‑damage repair protein uvrX |
| RA | CP006881 | 2,015,981 | A→C | 5.0% | A146A (GCT→GCG) | U712_09975 ← | Putative UV‑damage repair protein uvrX |
| RA | CP006881 | 2,015,984 | T→C | 5.4% | K145K (AAA→AAG) | U712_09975 ← | Putative UV‑damage repair protein uvrX |
| RA | CP006881 | 2,016,815 | T→C | 6.3% | R92G (AGA→GGA) | U712_09985 ← | Uncharacterized protein yozL |
| RA | CP006881 | 2,061,119 | T→A | 6.8% | R915S (AGA→AGT) | U712_10210 ← | 2‑oxoglutarate dehydrogenase E1 component |
| RA | CP006881 | 2,140,189 | A→G | 7.7% | L210P (CTC→CCC) | U712_10690 ← | 2‑keto‑3‑deoxygluconate permease |
| RA | CP006881 | 2,160,234 | A→T | 6.1% | D313V (GAT→GTT) | U712_10805 → | Penicillin‑binding protein 1A/1B |
| RA | CP006881 | 2,176,761 | T→C | 7.1% | T4A (ACT→GCT) | U712_10885 ← | putative deacetylase ypjG |
| RA | CP006881 | 2,177,051 | T→A | 8.9% | Q43H (CAA→CAT) | U712_10890 ← | Methylglyoxal synthase |
| RA | CP006881 | 2,179,015 | C→G | 12.2% | T178T (ACC→ACG) | U712_10905 → | UPF0750 membrane protein ypjC |
| RA | CP006881 | 2,179,021 | G→A | 12.2% | V180V (GTG→GTA) | U712_10905 → | UPF0750 membrane protein ypjC |
| RA | CP006881 | 2,179,036 | T→G | 7.7% | A185A (GCT→GCG) | U712_10905 → | UPF0750 membrane protein ypjC |
| RA | CP006881 | 2,179,048 | T→C | 7.5% | I189I (ATT→ATC) | U712_10905 → | UPF0750 membrane protein ypjC |
| RA | CP006881 | 2,188,798 | A→G | 5.8% | V187V (GTT→GTC) | U712_10965 ← | Histidinol‑phosphate aminotransferase |
| RA | CP006881 | 2,188,808 | T→C | 5.8% | H184R (CAT→CGT) | U712_10965 ← | Histidinol‑phosphate aminotransferase |
| RA | CP006881 | 2,197,511 | C→T | 6.9% | A209A (GCG→GCA) | U712_11010 ← | Chorismate synthase |
| RA | CP006881 | 2,198,982 | Δ1 bp | 7.3% | coding (1/771 nt) | U712_11015 ← | Chemotaxis protein methyltransferase |
| RA | CP006881 | 2,198,983 | Δ1 bp | 7.3% | intergenic (‑1/+239) | U712_11015 ← / ← U712_11020 | Chemotaxis protein methyltransferase/Nucleoside diphosphate kinase |
| RA | CP006881 | 2,232,718 | T→C | 7.0% | D121G (GAT→GGT) | U712_11215 ← | RNA polymerase sigma factor sigX |
| RA | CP006881 | 2,289,100 | G→T | 100% | P184T (CCG→ACG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,365,217 | T→C | 6.0% | R289G (AGA→GGA) | U712_11990 ← | putative glycine dehydrogenase [decarboxylating] subunit 1 |
| RA | CP006881 | 2,538,136 | Δ1 bp | 6.3% | intergenic (‑19/+244) | U712_13030 ← / ← U712_13035 | UPF0053 protein yrkA/Uncharacterized protein yrzO |
| RA | CP006881 | 2,657,309 | C→A | 20.5% | E140* (GAA→TAA) | U712_13675 ← | putative oxidoreductase yrbE |
| RA | CP006881 | 2,790,782 | Δ1 bp | 6.7% | coding (238/837 nt) | U712_14390 ← | Formamidopyrimidine‑DNA glycosylase |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,863,169 | C→A | 12.5% | intergenic (‑146/+130) | U712_14770 ← / ← U712_14775 | Catabolite control protein A/Protein AroA(G) |
| RA | CP006881 | 2,863,520 | T→A | 5.7% | T289S (ACG→TCG) | U712_14775 ← | Protein AroA(G) |
| RA | CP006881 | 2,881,549 | T→C | 5.2% | T38T (ACA→ACG) | U712_14865 ← | Pullulanase |
| RA | CP006881 | 2,892,386 | A→C | 21.4% | L212R (CTT→CGT) | U712_14920 ← | putative cell division protein ytgP |
| RA | CP006881 | 2,928,823 | A→C | 17.2% | F124V (TTT→GTT) | U712_15080 ← | Bacitracin export permease protein BceB |
| RA | CP006881 | 2,948,146 | T→C | 11.6% | D254D (GAT→GAC) | U712_15180 → | Phosphoenolpyruvate carboxykinase |
| RA | CP006881 | 2,969,234 | C→T | 5.1% | P309P (CCG→CCA) | U712_15310 ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase |
| RA | CP006881 | 3,044,421 | A→C | 31.7% | C122W (TGT→TGG) | U712_15635 ← | Putative aminotransferase YugH |
| RA | CP006881 | 3,146,831 | A→C | 21.2% | K72N (AAA→AAC) | U712_16165 → | Purine catabolism regulatory protein |
| RA | CP006881 | 3,203,656 | T→C | 7.5% | W27R (TGG→CGG) | U712_16490 → | Transcriptional regulatory protein CssR |
| RA | CP006881 | 3,234,371 | C→T | 6.4% | G236S (GGC→AGC) | U712_16665 ← | Iron(3+)‑hydroxamate import system permease protein fhuG |
| RA | CP006881 | 3,265,379 | Δ1 bp | 8.2% | coding (608/1896 nt) | U712_16795 ← | putative membrane protein yvaC |
| RA | CP006881 | 3,285,257:1 | +T | 100% | intergenic (‑77/+143) | U712_16905 ← / ← U712_16910 | Transcriptional repressor sdpR/Glycine betaine/carnitine/choline transport system permease protein opuCD |
| RA | CP006881 | 3,309,168 | C→A | 28.5% | intergenic (‑61/+341) | U712_17015 ← / ← U712_17020 | putative amino acid permease YvbW/putative glycosylase yvbX |
| RA | CP006881 | 3,310,262 | A→T | 6.9% | Y94* (TAT→TAA) | U712_17020 ← | putative glycosylase yvbX |
| RA | CP006881 | 3,313,296 | G→C | 5.0% | P87R (CCG→CGG) | U712_17035 ← | Lactate utilization protein A |
| RA | CP006881 | 3,438,905 | A→G | 7.5% | H163H (CAT→CAC) | U712_17655 ← | Swarming motility protein swrAB |
| RA | CP006881 | 3,575,586 | A→G | 7.7% | I315V (ATC→GTC) | U712_18345 → | Ammonium transporter NrgA |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,600,511 | G→C | 5.7% | P86R (CCG→CGG) | U712_18530 ← | ATP synthase subunit beta |
| RA | CP006881 | 3,615,489 | G→T | 28.7% | L174L (CTC→CTA) | U712_18635 ← | Peptide chain release factor 1 |
| RA | CP006881 | 3,645,023 | T→A | 5.6% | G859G (GGA→GGT) | U712_18790 ← | Nitrate reductase alpha chain |
| RA | CP006881 | 3,695,073 | C→G | 5.4% | A559P (GCA→CCA) | U712_19040 ← | Protein rocB |
| RA | CP006881 | 3,720,161 | A→C | 6.5% | F448L (TTT→TTG) | U712_19185 ← | Sucrose‑6‑phosphate hydrolase |
| RA | CP006881 | 3,722,386 | A→G | 5.5% | S167S (AGT→AGC) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,400 | A→G | 5.5% | L163L (TTA→CTA) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,416 | A→G | 5.5% | F157F (TTT→TTC) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,422 | C→T | 6.3% | A155A (GCG→GCA) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,431 | G→A | 6.7% | F152F (TTC→TTT) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,437 | G→A | 6.8% | D150D (GAC→GAT) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,440 | G→A | 6.0% | L149L (CTC→CTT) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,451 | G→A | 6.5% | L146L (CTG→TTG) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,722,452 | C→A | 6.5% | L145L (CTG→CTT) | U712_19190 ← | PTS system sucrose‑specific EIIBC component |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 88.7% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205 | C→T | 12.1% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,762,592 | T→G | 8.4% | P227P (CCA→CCC) | U712_19395 ← | General stress protein A |
| RA | CP006881 | 3,772,635 | A→G | 22.0% | Y334C (TAT→TGT) | U712_19455 → | Protein dltB |
| RA | CP006881 | 3,787,736 | A→G | 8.2% | V40A (GTC→GCC) | U712_19540 ← | Negative regulatory protein yxlD |
| RA | CP006881 | 3,905,563 | G→T | 13.7% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,910,100 | G→A | 5.2% | G135D (GGC→GAC) | U712_20155 → | Hypothetical Protein |
| RA | CP006881 | 3,932,408 | G→A | 5.4% | W139* (TGG→TAG) | U712_20270 → | Gluconokinase |
| RA | CP006881 | 3,934,154 | A→G | 6.4% | K198E (AAA→GAA) | U712_20275 → | Gluconate permease |
| RA | CP006881 | 4,014,052 | A→T | 5.9% | V45E (GTG→GAG) | U712_20730 ← | putative maltose O‑acetyltransferase |
| RA | CP006881 | 4,025,278 | G→A | 7.7% | R7K (AGA→AAA) | U712_20795 → | Uncharacterized protein yyaB |
| RA | pSIJ663_pHT315_araE_xy | 111 | T→A | 5.2% | intergenic (–/‑2867) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.5% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.5% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.0% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,214 | C→T | 100% | intergenic (–/‑764) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 6.6% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.1% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.1% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.1% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.0% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.5% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.4% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.0% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.1% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.9% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 6.5% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 5.9% | intergenic (+736/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 166444–171323 | 176218–171337 | 15–9775 | 15 [14] | [13] 15 | U712_21020–[U712_21045] | U712_21020,U712_21025,U712_21030,U712_21035,U712_21040,[U712_21045] |
| * | * | ÷ | CP006881 | 245175 | 246105 | 931 | 15 [12] | [13] 15 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067440 | 1068637 | 1198 | 15 [14] | [14] 17 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149048 | 1150711 | 1664 | 16 [13] | [14] 15 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503044 | 1504643 | 1600 | 15 [13] | [13] 17 | [U712_07735]–U712_07740 | [U712_07735],U712_07740 |
| * | * | ÷ | CP006881 | 1562267 | 1566624 | 4358 | 15 [14] | [14] 15 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 3303199–3303319 | 3304612 | 1294–1414 | 21 [13] | [0] 59 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725699 | 3728122 | 2424 | 21 [11] | [9] 15 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757681 | 3759668 | 1988 | 15 [13] | [14] 15 | U712_19375 | U712_19375 |
| * | * | ÷ | pSIJ663_pHT315_araE_xy | 5552 | 11154–9806 | 4255–5603 | 7403 [392] | [4061] 4696 | ampR/– | –/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2471183 = | 53 (0.880) | 9 (0.160) | 8/222 | NT | 19.4% | intergenic (‑532/+42) | U712_12610/U712_12615 | Sporulation‑specific extracellular nuclease/Putative DNA recombinase |
| ? | CP006881 | = 2519215 | 24 (0.420) | coding (24/417 nt) | U712_12925 | RNA polymerase sigma‑K factor | |||||
| * | ? | CP006881 | 3304613 = | 0 (0.000) | 23 (0.010) +50 bp |
17/132 | NT | 92.1% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 7 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 214 (0.040) | 6114 (1.070) | 191/222 | NT | 96.8% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 6 (0.000) | 234 (0.040) | 65/226 | NT | 97.9% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 4 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||