mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 366,409 | C→T | intergenic (‑104/+19) | lacZ ← / ← lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| RA | 422,414 | Δ1 bp | intergenic (+55/‑104) | proY → / → malZ | putative transporter ProY/maltodextrin glucosidase |
| RA | 1,385,621 | Δ1 bp | coding (111/1062 nt) | ycjF → | conserved inner membrane protein YcjF |
| RA | 2,282,845 | (T)6→5 | intergenic (+44/+95) | rplY → / ← yejK | 50S ribosomal subunit protein L25/nucleoid‑associated protein YejK |
| RA | 2,728,708 | +T | noncoding (477/2904 nt) | rrlG ← | 23S ribosomal RNA |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 164533 | 164614 | 82 | 16 [15] | [10] 18 | [hrpB] | [hrpB] |
| * | * | ÷ | NC_000913 | 283488 | 284399 | 912 | 17 [14] | [15] 16 | yagF | CP4‑6 prophage; D‑xylonate dehydratase |
| * | * | ÷ | NC_000913 | 284794 | 285103 | 310 | 16 [15] | [15] 16 | yagF | CP4‑6 prophage; D‑xylonate dehydratase |
| * | * | ÷ | NC_000913 | 287484 | 287808 | 325 | 16 [15] | [15] 17 | yagH | CP4‑6 prophage; putative xylosidase/arabinosidase |
| * | * | ÷ | NC_000913 | 1873040 | 1886125 | 13086 | 65 [0] | [0] 87 | [dgcJ]–[yeaX] | [dgcJ],yeaK,yoaI,yeaL,nimR,nimT,yeaO,yoaF,dgcP,yoaK,yoaJ,yeaQ,yoaG,yeaR,leuE,dmlR,dmlA,yeaV,yeaW,[yeaX] |
| * | * | ÷ | NC_000913 | 3269960 | 3270196–3270161 | 202–237 | 16 [14] | [15] 16 | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| * | * | ÷ | NC_000913 | 3423700–3424234 | 3424515–3424238 | 5–816 | 16 [15] | [15] 16 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258675 | NA (NA) | 87 (1.910) | 38/374 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 1886126 = | 0 (0.000) | coding (282/966 nt) | yeaX | carnitine monooxygenase subunit YeaX | |||||
| * | ? | NC_000913 | 366315 = | 3096 (68.110) | 615 (23.000) +77 bp |
121/220 | 0.0 | 39.9% | intergenic (‑10/+113) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | = 2933013 | 59 (1.300) | coding (1/1149 nt) | fucO | L‑1,2‑propanediol oxidoreductase | |||||
| * | ? | NC_000913 | 381671 = | NA (NA) | 16 (0.360) | 12/368 | 2.8 | 100% | noncoding (412/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1468827 = | 0 (0.000) | noncoding (414/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 657539 | 31 (0.680) | 16 (0.350) | 13/374 | 2.7 | 34.4% | intergenic (+38/+16) | cspE/crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| ? | NC_000913 | 657543 = | 30 (0.660) | intergenic (+42/+12) | cspE/crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel | |||||
| * | ? | NC_000913 | 1207790 = | 17 (0.370) | 21 (0.510) | 18/342 | 1.4 | 55.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 18 (0.430) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 17 (0.370) | 38 (0.910) | 32/342 | 0.3 | 69.4% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 18 (0.430) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1722830 | 32 (0.700) | 14 (0.310) | 13/372 | 2.6 | 30.8% | coding (710/2013 nt) | ydhK | putative transporter YdhK |
| ? | NC_000913 | 1722834 = | 31 (0.690) | coding (714/2013 nt) | ydhK | putative transporter YdhK | |||||
| * | ? | NC_000913 | = 1821865 | 14 (0.310) | 17 (0.370) | 16/374 | 2.0 | 54.0% | intergenic (‑246/+53) | chbB/osmE | N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE |
| ? | NC_000913 | 1821869 = | 15 (0.330) | intergenic (‑250/+49) | chbB/osmE | N,N'‑diacetylchitobiose‑specific PTS enzyme IIB component/osmotically‑inducible lipoprotein OsmE | |||||
| * | ? | NC_000913 | = 1873039 | 0 (0.000) | 65 (1.430) | 45/374 | 0.1 | 100% | coding (999/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 2728679 | NA (NA) | 26 (0.580) +TTT |
15/358 | 2.1 | 100% | noncoding (506/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | NC_000913 | 2728680 = | 0 (0.000) | noncoding (505/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3098653 | 38 (0.860) | 13 (0.290) +TTT |
11/356 | 3.0 | 25.0% | coding (913/1008 nt) | yggM | DUF1202 domain‑containing protein YggM |
| ? | NC_000913 | 3098654 = | 40 (0.880) | coding (912/1008 nt) | yggM | DUF1202 domain‑containing protein YggM | |||||
| * | ? | NC_000913 | 3427075 = | NA (NA) | 15 (0.330) | 14/374 | 2.4 | 40.5% | intergenic (‑42/+1) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913 | 4037222 = | 22 (0.480) | intergenic (+5/‑38) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 4050231 | 32 (0.700) | 18 (0.400) | 15/372 | 2.2 | 36.8% | coding (535/633 nt) | yihA | GTP‑binding protein YihA |
| ? | NC_000913 | 4050235 = | 30 (0.660) | coding (531/633 nt) | yihA | GTP‑binding protein YihA | |||||
| * | ? | NC_000913 | = 4504265 | 33 (0.730) | 16 (0.350) | 14/374 | 2.4 | 32.6% | coding (208/1218 nt) | yjhB | putative sialic acid transporter |
| ? | NC_000913 | 4504269 = | 33 (0.730) | coding (212/1218 nt) | yjhB | putative sialic acid transporter | |||||