mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 43,885 | A→G | 13.7% | Y51C (TAT→TGT) | U712_00180 → | UPF0213 protein yazA |
| RA | CP006881 | 66,188 | A→T | 18.0% | M458L (ATG→TTG) | U712_00295 → | putative membrane protein yabM |
| RA | CP006881 | 125,619 | C→T | 82.4% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 126,246 | G→A | 15.5% | V230M (GTG→ATG) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 186,066 | T→G | 28.7% | K126N (AAA→AAC) | U712_00845 ← | Uncharacterized protein ybbC |
| RA | CP006881 | 326,012 | C→A | 17.7% | I223I (ATC→ATA) | U712_01555 → | Uncharacterized protein ycgA |
| RA | CP006881 | 375,294 | G→A | 5.2% | G166G (GGC→GGT) | U712_01790 ← | 3‑hexulose‑6‑phosphate synthase |
| RA | CP006881 | 381,795 | A→T | 6.7% | L1612F (TTA→TTT) | U712_01805 → | Surfactin synthase subunit 1 |
| RA | CP006881 | 419,825 | A→C | 17.7% | L51R (CTT→CGT) | U712_01910 ← | Uncharacterized protein yczF |
| RA | CP006881 | 512,556 | G→A | 6.3% | noncoding (28/72 nt) | U712_21090 → | tRNA‑Gln |
| RA | CP006881 | 567,843 | Δ1 bp | 7.7% | coding (1570/1644 nt) | U712_02805 ← | Nucleotide‑binding protein ExpZ |
| RA | CP006881 | 567,844 | Δ1 bp | 7.7% | coding (1569/1644 nt) | U712_02805 ← | Nucleotide‑binding protein ExpZ |
| RA | CP006881 | 571,197 | C→A | 19.5% | intergenic (‑89/+83) | U712_02810 ← / ← U712_02815 | putative transporter YdgF/Protein dinB |
| RA | CP006881 | 632,571 | A→T | 5.1% | M313L (ATG→TTG) | U712_03090 → | putative glucitol transport protein gutA |
| RA | CP006881 | 633,470 | T→G | 22.8% | L105R (CTG→CGG) | U712_03095 → | putative sugar kinase ydjE |
| RA | CP006881 | 659,075 | A→G | 18.4% | intergenic (+57/‑154) | U712_03215 → / → U712_03220 | Guanine/hypoxanthine permease pbuG/Uncharacterized protein yebC |
| RA | CP006881 | 743,700 | G→A | 7.1% | V380I (GTA→ATA) | U712_03585 → | Lipoprotein lipO |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 967,334 | G→A | 6.8% | L319L (TTG→TTA) | U712_04730 → | Glycerol kinase |
| RA | CP006881 | 981,030 | T→G | 28.8% | N155T (AAC→ACC) | U712_04790 ← | Alkaline phosphatase 4 |
| RA | CP006881 | 1,000,012 | C→A | 30.4% | W111L (TGG→TTG) | U712_04885 ← | CrcB‑like protein 1 |
| RA | CP006881 | 1,070,781 | G→T | 5.2% | L5L (CTG→CTT) | U712_05275 → | Putative ABC transporter substrate‑binding lipoprotein yhfQ |
| RA | CP006881 | 1,113,804 | T→A | 5.5% | intergenic (+90/+80) | U712_05485 → / ← U712_05490 | Hypothetical Protein/Aspartyl‑phosphate phosphatase yisI |
| RA | CP006881 | 1,169,789 | T→C | 15.2% | W43R (TGG→CGG) | U712_05805 → | Transcriptional activator protein med |
| RA | CP006881 | 1,169,937 | A→G | 38.5% | H92R (CAT→CGT) | U712_05805 → | Transcriptional activator protein med |
| RA | CP006881 | 1,183,409 | A→C | 16.3% | N176T (AAC→ACC) | U712_05870 → | Oligopeptide‑binding protein oppA |
| RA | CP006881 | 1,211,125 | A→G | 5.4% | K102E (AAG→GAG) | U712_06030 → | Enoyl‑[acyl‑carrier‑protein] reductase [NADH] FabI |
| RA | CP006881 | 1,291,215 | G→T | 5.3% | V328V (GTG→GTT) | U712_06550 → | Phage‑like element PBSX protein xkdE |
| RA | CP006881 | 1,307,483 | C→G | 5.3% | S406* (TCA→TGA) | U712_06645 → | Phage‑like element PBSX protein xkdV |
| RA | CP006881 | 1,390,333 | T→C | 5.1% | S88P (TCT→CCT) | U712_07110 → | 2,3‑diketo‑5‑methylthiopentyl‑1‑phosphate enolase |
| RA | CP006881 | 1,395,470 | A→G | 21.9% | L186P (CTA→CCA) | U712_07140 ← | Sporulation kinase D |
| RA | CP006881 | 1,474,968 | G→T | 40.4% | S88* (TCA→TAA) | U712_07575 ← | Uncharacterized protein ykoA |
| RA | CP006881 | 1,494,726 | T→C | 6.5% | G384G (GGT→GGC) | U712_07675 → | Dihydrolipoyllysine‑residue acetyltransferase component of pyruvate dehydrogenase complex |
| RA | CP006881 | 1,528,836 | C→A | 17.9% | intergenic (‑89/‑51) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,615,577 | C→T | 30.2% | G466G (GGC→GGT) | U712_08300 → | Serine/threonine‑protein kinase PrkC |
| RA | CP006881 | 1,652,231 | A→G | 5.8% | N173S (AAC→AGC) | U712_08490 → | ATP‑dependent protease ATPase subunit ClpY |
| JC | CP006881 | 1,663,448 | Δ9 bp | 11.0% | coding (229‑237/795 nt) | U712_08555 → | Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 1,667,358 | G→A | 56.5% | W37* (TGG→TAG) | U712_08585 → | Flagellar biosynthetic protein fliZ |
| RA | CP006881 | 1,800,870 | C→A | 7.6% | pseudogene (3503/16546 nt) | U712_09020 → | frameshift (+1) in homopolymer run at nucleotide position 6839 in gene |
| RA | CP006881 | 1,871,087 | A→T | 5.6% | T186S (ACA→TCA) | U712_09340 → | putative membrane protein yndD |
| RA | CP006881 | 1,896,934 | T→G | 13.3% | G140G (GGT→GGG) | U712_09525 → | DNA topoisomerase 4 subunit B |
| RA | CP006881 | 1,923,742 | A→T | 6.3% | Y1104* (TAT→TAA) | U712_09640 ← | Plipastatin synthase subunit E |
| RA | CP006881 | 2,044,879 | A→G | 6.6% | intergenic (+320/+275) | U712_10115 → / ← U712_10120 | Transcriptional regulatory protein desR/Cell wall‑binding protein yocH |
| RA | CP006881 | 2,113,814 | A→C | 17.4% | intergenic (+18/+21) | U712_10530 → / ← U712_10535 | Hemolysin‑3‑like protein/Uncharacterized protein ypkP |
| RA | CP006881 | 2,141,255 | A→G | 19.5% | I66I (ATT→ATC) | U712_10695 ← | KHG/KDPG aldolase |
| RA | CP006881 | 2,175,293 | A→G | 13.0% | V257V (GTT→GTC) | U712_10880 ← | putative glycosyltransferase ypjH |
| RA | CP006881 | 2,175,305 | T→C | 13.0% | L253L (TTA→TTG) | U712_10880 ← | putative glycosyltransferase ypjH |
| RA | CP006881 | 2,175,308 | T→G | 12.6% | G252G (GGA→GGC) | U712_10880 ← | putative glycosyltransferase ypjH |
| RA | CP006881 | 2,175,322 | C→T | 12.5% | V248I (GTC→ATC) | U712_10880 ← | putative glycosyltransferase ypjH |
| RA | CP006881 | 2,188,141 | C→G | 5.3% | P29P (CCG→CCC) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,188,147 | C→A | 6.5% | E27D (GAG→GAT) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,188,159 | C→G | 5.6% | A23A (GCG→GCC) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,188,165 | C→G | 6.2% | A21A (GCG→GCC) | U712_10960 ← | Prephenate dehydrogenase |
| RA | CP006881 | 2,197,067 | T→A | 10.3% | A357A (GCA→GCT) | U712_11010 ← | Chorismate synthase |
| RA | CP006881 | 2,199,465 | C→T | 8.2% | G68G (GGG→GGA) | U712_11020 ← | Nucleoside diphosphate kinase |
| RA | CP006881 | 2,221,725 | C→G | 24.3% | K78N (AAG→AAC) | U712_11150 ← | Adapter protein mecA 2 |
| RA | CP006881 | 2,303,944 | C→G | 10.6% | D240H (GAC→CAC) | U712_11650 ← | Uncharacterized protein yqjE |
| RA | CP006881 | 2,384,843 | G→T | 11.0% | Q108K (CAA→AAA) | U712_12125 ← | putative lipoprotein yqgU |
| RA | CP006881 | 2,542,893 | C→A | 17.7% | intergenic (‑212/+75) | U712_13055 ← / ← U712_13060 | Cadmium, cobalt and zinc/H(+)‑K(+) antiporter/putative tautomerase yrdN |
| RA | CP006881 | 2,599,887 | C→T | 7.9% | V277V (GTC→GTT) | U712_13380 → | Putative formate dehydrogenase yrhE |
| RA | CP006881 | 2,610,027 | C→A | 6.1% | intergenic (‑206/+45) | U712_13430 ← / ← U712_13435 | Transcription elongation factor greA/Uridine kinase |
| RA | CP006881 | 2,708,259 | C→T | 5.7% | G189D (GGC→GAC) | U712_13945 ← | 3‑isopropylmalate dehydratase large subunit |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,839,753 | A→G | 8.5% | I223V (ATC→GTC) | U712_14660 → | putative inorganic polyphosphate/ATP‑NAD kinase 2 |
| RA | CP006881 | 2,885,490 | G→A | 7.9% | Q393* (CAA→TAA) | U712_14890 ← | Putative dipeptidase ytjP |
| RA | CP006881 | 2,920,813 | C→G | 5.7% | E696Q (GAA→CAA) | U712_15050 ← | Leucyl‑tRNA synthetase |
| RA | CP006881 | 2,963,937 | G→A | 43.6% | intergenic (‑124/+156) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 2,969,679 | T→G | 10.2% | K161T (AAG→ACG) | U712_15310 ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase |
| RA | CP006881 | 3,021,242 | T→G | 11.2% | N181T (AAC→ACC) | U712_15515 ← | putative oxidoreductase yuxG |
| RA | CP006881 | 3,186,704 | C→A | 23.6% | E389* (GAA→TAA) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,186,711 | A→C | 23.4% | G386G (GGT→GGG) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,348,914 | C→G | 26.8% | G142G (GGC→GGG) | U712_17210 → | Para‑nitrobenzyl esterase |
| RA | CP006881 | 3,354,774 | A→C | 9.4% | K303N (AAA→AAC) | U712_17245 → | Levansucrase |
| RA | CP006881 | 3,476,682 | G→T | 32.0% | T22K (ACA→AAA) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,477,815 | T→C | 9.9% | K217E (AAG→GAG) | U712_17860 ← | N‑acetylmuramoyl‑L‑alanine amidase LytC |
| RA | CP006881 | 3,566,279 | G→T | 5.4% | S93* (TCG→TAG) | U712_18300 ← | Stage III sporulation protein D |
| RA | CP006881 | 3,571,567 | T→C | 8.6% | S14G (AGC→GGC) | U712_18320 ← | putative allantoin permease |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,586,470 | C→T | 54.9% | R60H (CGT→CAT) | U712_18425 ← | Urease subunit beta |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,202 | A→C | 29.4% | intergenic (‑34/‑495) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,232 | A→C | 30.4% | intergenic (‑64/‑465) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,735,910 | C→A | 36.4% | V66L (GTA→TTA) | U712_19255 ← | Quinol oxidase subunit 2 |
| RA | CP006881 | 3,866,522 | T→G | 13.6% | V378G (GTC→GGC) | U712_19925 → | Putative histidine permease |
| RA | CP006881 | 3,905,563 | G→T | 19.6% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,921,943 | T→G | 14.6% | T33P (ACG→CCG) | U712_20210 ← | Uncharacterized protein yxaJ |
| RA | CP006881 | 3,929,267 | T→G | 15.9% | E189A (GAG→GCG) | U712_20255 ← | General stress protein 30 |
| RA | CP006881 | 3,940,000 | A→T | 5.3% | F153Y (TTC→TAC) | U712_20295 ← | Aryl‑phospho‑beta‑D‑glucosidase BglA |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.0% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 7.4% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 10.0% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 11.1% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.7% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.5% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,750 | C→A | 5.3% | intergenic (+35/‑121) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 6.3% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.4% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,642 | G→T | 5.2% | V258F (GTT→TTT) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 11.0% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.8% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.0% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,205 | G→A | 100% | intergenic (+474/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,673 | A→C | 6.8% | intergenic (+1942/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,676 | T→G | 6.4% | intergenic (+1945/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,689 | A→C | 8.3% | intergenic (+1958/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,697 | T→A | 6.0% | intergenic (+1966/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,717 | G→C | 9.8% | intergenic (+1986/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,718 | A→C | 11.2% | intergenic (+1987/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,621 | T→G | 5.3% | intergenic (+3890/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,624 | T→G | 5.4% | intergenic (+3893/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,799 | A→C | 5.5% | intergenic (+4068/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,852 | T→A | 5.1% | intergenic (+4121/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245198 | 246091 | 894 | 14 [0] | [8] 14 | U712_01140 | Extracellular metalloprotease |
| * | * | ÷ | CP006881 | 1067445 | 1068612 | 1168 | 14 [10] | [10] 16 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149053 | 1150724 | 1672 | 20 [12] | [12] 14 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503064 | 1504650 | 1587 | 14 [9] | [13] 17 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562243 | 1566623 | 4381 | 14 [13] | [13] 14 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261293 | 2262061 | 769 | 16 [7] | [13] 15 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3303199–3303322 | 3304612 | 1291–1414 | 14 [13] | [2] 50 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725700 | 3728134 | 2435 | 21 [2] | [13] 14 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757694 | 3759655 | 1962 | 14 [13] | [3] 14 | [U712_19375] | [U712_19375] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 1668917 = | 58 (0.960) | 10 (0.170) | 9/230 | NT | 13.4% | coding (60/780 nt) | U712_08600 | Flagellar biosynthetic protein fliR |
| ? | CP006881 | = 1669509 | 72 (1.200) | coding (652/780 nt) | U712_08600 | Flagellar biosynthetic protein fliR | |||||