breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutation
evidence	position	mutation	annotation	gene	description
MC JC	2,399,465	Δ7 bp	coding (650‑656/939 nt)	lrhA ←	transcriptional regulator LrhA

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	29200	29308	109	2 [1]	[1] 2	dapB/carA	4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit
*	*	÷	NZ_CP009273	41978	42049	72	2 [0]	[1] 2	caiT/fixA	L‑carnitine/gamma‑butyrobetaine antiporter/electron transfer flavoprotein FixA
*	*	÷	NZ_CP009273	80494	80607	114	2 [1]	[0] 2	leuL/leuO	leu operon leader peptide/transcriptional regulator LeuO
*	*	÷	NZ_CP009273	80660	80683	24	2 [0]	[0] 2	leuL/leuO	leu operon leader peptide/transcriptional regulator LeuO
*	*	÷	NZ_CP009273	80724	80791	68	2 [0]	[0] 5	leuL/leuO	leu operon leader peptide/transcriptional regulator LeuO
*	*	÷	NZ_CP009273	137722	137772	51	3 [1]	[1] 5	gcd/hpt	quinoprotein glucose dehydrogenase/hypoxanthine phosphoribosyltransferase
*	*	÷	NZ_CP009273	152718	152760	43	2 [1]	[1] 2	yadV/yadN	fimbrial chaperone/fimbrial protein
*	*	÷	NZ_CP009273	153340	153404	65	2 [1]	[1] 2	[yadN]	[yadN]
*	*	÷	NZ_CP009273	153525	153748	224	2 [1]	[1] 3	[folK]	[folK]
*	*	÷	NZ_CP009273	227385	227407	23	2 [1]	[1] 2	yafC/yafD	DNA‑binding transcriptional regulator YafC/endonuclease/exonuclease/phosphatase family protein
*	*	÷	NZ_CP009273	230569	230612	44	2 [1]	[1] 2	gloB	hydroxyacylglutathione hydrolase
*	*	÷	NZ_CP009273	233740	233763	24	2 [0]	[1] 3	BW25113_RS01085/BW25113_RS01090	tRNA‑Asp/lipoprotein
*	*	÷	NZ_CP009273	234671	234697	27	2 [1]	[0] 2	BW25113_RS01090/BW25113_RS01095	lipoprotein/hypothetical protein
*	*	÷	NZ_CP009273	235042	235122	81	3 [1]	[0] 2	BW25113_RS01095	hypothetical protein
*	*	÷	NZ_CP009273	235213	235241	29	2 [0]	[1] 2	[BW25113_RS01095]–[BW25113_RS01100]	[BW25113_RS01095],[BW25113_RS01100]
*	*	÷	NZ_CP009273	243093	243137	45	2 [1]	[0] 2	dinJ/yafL	type II toxin‑antitoxin system antitoxin DinJ/C40 family peptidase
*	*	÷	NZ_CP009273	249197	249212	16	2 [0]	[1] 2	yafP	GNAT family N‑acetyltransferase
*	*	÷	NZ_CP009273	254795	254811	17	2 [0]	[1] 3	phoE	phosphoporin PhoE
*	*	÷	NZ_CP009273	255901	255959	59	4 [0]	[0] 4	phoE/proB	phosphoporin PhoE/glutamate 5‑kinase
*	*	÷	NZ_CP009273	266063	266089	27	2 [1]	[0] 2	BW25113_RS01295	transposase
*	*	÷	NZ_CP009273	356981	357574	594	3 [0]	[1] 3	[lacA]	[lacA]
*	*	÷	NZ_CP009273	380265	380335	71	2 [1]	[1] 2	BW25113_RS01880/tauA	PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
*	*	÷	NZ_CP009273	380412	380458	47	2 [1]	[0] 3	BW25113_RS01880/tauA	PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
*	*	÷	NZ_CP009273	380549	380583	35	4 [1]	[1] 2	BW25113_RS01880/tauA	PIG‑L family deacetylase/taurine ABC transporter substrate‑binding protein
*	*	÷	NZ_CP009273	385321	385364	44	3 [1]	[0] 2	hemB/BW25113_RS01915	porphobilinogen synthase/outer membrane autotransporter barrel domain‑containing protein
*	*	÷	NZ_CP009273	396669	396672	4	2 [0]	[0] 2	BW25113_RS25915/iraP	hypothetical protein/anti‑adapter protein IraP
*	*	÷	NZ_CP009273	401692	401729	38	2 [1]	[0] 3	yaiI/aroL	YaiI/YqxD family protein/shikimate kinase AroL
*	*	÷	NZ_CP009273	402620	402630	11	2 [0]	[0] 2	[yaiA]	[yaiA]
*	*	÷	NZ_CP009273	402693	402740	48	3 [1]	[1] 2	yaiA/aroM	YaiA family protein/AroM family protein
*	*	÷	NZ_CP009273	475959	475993	35	2 [0]	[0] 2	tomB	Hha toxicity modulator TomB
*	*	÷	NZ_CP009273	476527	476605	79	2 [1]	[1] 2	tomB/acrB	Hha toxicity modulator TomB/efflux RND transporter permease AcrB
*	*	÷	NZ_CP009273	498792	498802	11	2 [0]	[1] 2	ybaL/fsr	Kef family K(+) transporter/fosmidomycin MFS transporter
*	*	÷	NZ_CP009273	518375	518611	237	2 [1]	[1] 2	ybbP/rhsD	ABC transporter permease/rhs element protein RhsD
*	*	÷	NZ_CP009273	522890	523181	292	2 [1]	[1] 2	[rhsD]–[ybbC]	[rhsD],[ybbC]
*	*	÷	NZ_CP009273	524146	524232	87	2 [0]	[1] 3	BW25113_RS24960	hypothetical protein
*	*	÷	NZ_CP009273	524307	524404	98	2 [1]	[1] 2	[BW25113_RS24960]	[BW25113_RS24960]
*	*	÷	NZ_CP009273	524879	524957	79	2 [1]	[1] 2	BW25113_RS25970/ylbG	hypothetical protein/helix‑turn‑helix domain‑containing protein
*	*	÷	NZ_CP009273	533004	533077	74	3 [0]	[1] 2	glxR/ybbW	2‑hydroxy‑3‑oxopropionate reductase/putative allantoin permease
*	*	÷	NZ_CP009273	553541	553643	103	2 [0]	[1] 2	folD/fimA	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD/type 1 fimbrial major subunit FimA
*	*	÷	NZ_CP009273	559307	559389	83	2 [1]	[1] 2	fimZ	fimbria biosynthesis transcriptional regulator FimZ
*	*	÷	NZ_CP009273	564139	564202	64	2 [1]	[1] 3	[BW25113_RS25485]	[BW25113_RS25485]
*	*	÷	NZ_CP009273	565414	565429	16	2 [1]	[0] 2	ybcK	recombinase family protein
*	*	÷	NZ_CP009273	565493	565586	94	2 [0]	[1] 4	ybcK	recombinase family protein
*	*	÷	NZ_CP009273	567072	567127	56	2 [0]	[1] 2	ybcM	helix‑turn‑helix transcriptional regulator
*	*	÷	NZ_CP009273	569730	569866	137	2 [1]	[1] 2	[quuD]	[quuD]
*	*	÷	NZ_CP009273	572338	572540	203	2 [1]	[1] 2	BW25113_RS02855/essD	porin/phage lysis protein EssD
*	*	÷	NZ_CP009273	576179	576198	20	2 [1]	[0] 2	ylcI/nohD	YlcI/YnfO family protein/DNA‑packaging protein
*	*	÷	NZ_CP009273	578587	578702	116	2 [1]	[1] 2	[BW25113_RS26085]	[BW25113_RS26085]
*	*	÷	NZ_CP009273	578866	578874	9	3 [0]	[0] 2	BW25113_RS26085/appY	tail fiber assembly protein/DNA‑binding transcriptional activator AppY
*	*	÷	NZ_CP009273	578920	579167	248	2 [0]	[0] 2	[appY]	[appY]
*	*	÷	NZ_CP009273	579213	579279	67	2 [0]	[1] 2	appY	DNA‑binding transcriptional activator AppY
*	*	÷	NZ_CP009273	579529	579550	22	2 [0]	[0] 2	appY	DNA‑binding transcriptional activator AppY
*	*	÷	NZ_CP009273	579890	579922	33	3 [1]	[0] 2	appY/ompT	DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
*	*	÷	NZ_CP009273	580003	580051	49	2 [0]	[1] 4	appY/ompT	DNA‑binding transcriptional activator AppY/omptin family outer membrane protease OmpT
*	*	÷	NZ_CP009273	580833	580878	46	2 [1]	[0] 2	ompT	omptin family outer membrane protease OmpT
*	*	÷	NZ_CP009273	581130	581248	119	2 [0]	[1] 2	ompT/envY	omptin family outer membrane protease OmpT/DNA‑binding transcriptional regulator EnvY
*	*	÷	NZ_CP009273	608131	608186	56	2 [1]	[1] 2	fepA/fes	siderophore enterobactin receptor FepA/enterochelin esterase
*	*	÷	NZ_CP009273	613516	613587	72	2 [0]	[0] 2	entF/wzz(fepE)	enterobactin non‑ribosomal peptide synthetase EntF/LPS O‑antigen length regulator Wzz(fepE)
*	*	÷	NZ_CP009273	632158	632166	9	3 [1]	[0] 2	ybdN/ybdO	phosphoadenosine phosphosulfate reductase/LysR family transcriptional regulator
*	*	÷	NZ_CP009273	651722	651758	37	2 [0]	[1] 2	dcuC/pagP	anaerobic C4‑dicarboxylate transporter DcuC/lipid IV(A) palmitoyltransferase PagP
*	*	÷	NZ_CP009273	656836	656896	61	2 [1]	[1] 3	ybeF/lipB	YbeF family transcriptional regulator/lipoyl(octanoyl) transferase LipB
*	*	÷	NZ_CP009273	674862	674916	55	3 [1]	[1] 2	[ybeT]	[ybeT]
*	*	÷	NZ_CP009273	712084	712153	70	3 [1]	[1] 2	BW25113_RS03565/BW25113_RS03570	DUF2625 domain‑containing protein/winged helix‑turn‑helix domain‑containing protein
*	*	÷	NZ_CP009273	712834	712836	3	3 [1]	[0] 2	potE	putrescine‑ornithine antiporter
*	*	÷	NZ_CP009273	716391	716520	130	2 [0]	[1] 2	[kdpE]	[kdpE]
*	*	÷	NZ_CP009273	724884	724956	73	2 [1]	[1] 2	ybfA/rhsC	YbfA family protein/rhs element protein RhsC
*	*	÷	NZ_CP009273	729220	729266	47	3 [0]	[1] 2	[rhsC]–[BW25113_RS03630]	[rhsC],[BW25113_RS03630]
*	*	÷	NZ_CP009273	731644	731723	80	2 [1]	[0] 2	[BW25113_RS03640]	[BW25113_RS03640]
*	*	÷	NZ_CP009273	731779	731826	48	2 [0]	[0] 2	BW25113_RS03640/ybfQ	hypothetical protein/ISAs1 family transposase
*	*	÷	NZ_CP009273	732167	732257–732227	61–91	2 [1]	[1] 2	ybfQ/BW25113_RS03650	ISAs1 family transposase/ISAs1 family transposase
*	*	÷	NZ_CP009273	733476	733545	70	2 [0]	[1] 2	BW25113_RS03650/ybfD	ISAs1 family transposase/ISAs1 family transposase
*	*	÷	NZ_CP009273	745133	745186	54	2 [0]	[1] 2	[ybgP]–[ybgQ]	[ybgP],[ybgQ]
*	*	÷	NZ_CP009273	748260	748490	231	2 [1]	[1] 3	ybgD/gltA	fimbrial protein/citrate synthase
*	*	÷	NZ_CP009273	748533	748543	11	2 [0]	[1] 2	ybgD/gltA	fimbrial protein/citrate synthase
*	*	÷	NZ_CP009273	761374	761445	72	2 [1]	[1] 3	mngR/mngA	mannosyl‑D‑glycerate transport/metabolism system transcriptional repressor MngR/PTS 2‑O‑a‑mannosyl‑D‑glycerate transporter subunit IIABC
*	*	÷	NZ_CP009273	766303	766590	288	2 [0]	[1] 2	mngB/cydA	mannosylglycerate hydrolase/cytochrome ubiquinol oxidase subunit I
*	*	÷	NZ_CP009273	796003	796040	38	2 [0]	[1] 3	[ybhD]	[ybhD]
*	*	÷	NZ_CP009273	808444	808476	33	2 [1]	[1] 2	bioD/uvrB	dethiobiotin synthase/excinuclease ABC subunit UvrB
*	*	÷	NZ_CP009273	816185	816244	60	2 [1]	[0] 2	ybhL/ybhM	Bax inhibitor‑1/YccA family protein/Bax inhibitor‑1/YccA family protein
*	*	÷	NZ_CP009273	833527	833542	16	2 [1]	[1] 2	ybiJ/ybiI	DUF1471 family protein YbiJ/C4‑type zinc finger protein YbiI
*	*	÷	NZ_CP009273	837617	837657	41	2 [1]	[1] 2	mcbA/rlmF	DUF1471 family periplasmic protein McbA/23S rRNA (adenine(1618)‑N(6))‑methyltransferase RlmF
*	*	÷	NZ_CP009273	858304	858328	25	2 [1]	[1] 2	ybiY	glycyl‑radical enzyme activating protein
*	*	÷	NZ_CP009273	869247	869293	47	2 [1]	[0] 2	pdeI	EAL domain‑containing protein
*	*	÷	NZ_CP009273	896114	896133	20	2 [1]	[0] 2	artJ/artM	ABC transporter substrate‑binding protein ArtJ/arginine ABC transporter permease ArtM
*	*	÷	NZ_CP009273	909296	909321	26	2 [0]	[1] 2	hcp/lysO	hydroxylamine reductase/L‑lysine exporter LysO
*	*	÷	NZ_CP009273	910781	910828	48	2 [1]	[1] 3	[aqpZ]	[aqpZ]
*	*	÷	NZ_CP009273	911694	911701	8	2 [1]	[0] 2	aqpZ/ybjD	aquaporin Z/ATP‑dependent endonuclease
*	*	÷	NZ_CP009273	926287	926296	10	2 [1]	[0] 2	cydD	cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD
*	*	÷	NZ_CP009273	926477	926523	47	2 [1]	[1] 2	cydD/trxB	cysteine/glutathione ABC transporter permease/ATP‑binding protein CydD/thioredoxin‑disulfide reductase
*	*	÷	NZ_CP009273	941799	941846	48	2 [1]	[1] 5	ycaD	MFS transporter
*	*	÷	NZ_CP009273	943874	943896	23	2 [1]	[0] 2	ycaM	amino acid permease
*	*	÷	NZ_CP009273	950046	950255	210	2 [0]	[0] 4	focA/ycaO	formate transporter FocA/30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
*	*	÷	NZ_CP009273	955660	955701	42	2 [1]	[1] 2	aroA/ycaL	3‑phosphoshikimate 1‑carboxyvinyltransferase/metallopeptidase YcaL
*	*	÷	NZ_CP009273	982669	982746	78	2 [0]	[1] 2	ompF/asnS	porin OmpF/asparagine‑‑tRNA ligase
*	*	÷	NZ_CP009273	993050	993299	250	2 [1]	[1] 2	ssuE/elfA	NADPH‑dependent FMN reductase/fimbrial protein
*	*	÷	NZ_CP009273	993826	993904	79	2 [1]	[1] 2	[elfA]	[elfA]
*	*	÷	NZ_CP009273	1004485	1004528	44	3 [1]	[1] 2	rlmKL	bifunctional 23S rRNA (guanine(2069)‑N(7))‑methyltransferase RlmK/23S rRNA (guanine(2445)‑N(2))‑methyltransferase RlmL
*	*	÷	NZ_CP009273	1010896	1010952	57	2 [0]	[1] 2	[pqiC]	[pqiC]
*	*	÷	NZ_CP009273	1046198	1046254	57	2 [1]	[1] 3	BW25113_RS05135/cspH	IS1‑like element IS1D family transposase/cold shock‑like protein CspH
*	*	÷	NZ_CP009273	1058422	1058443	22	2 [1]	[1] 2	cbpA	curved DNA‑binding protein
*	*	÷	NZ_CP009273	1059483	1059508	26	3 [1]	[1] 2	[yccE]	[yccE]
*	*	÷	NZ_CP009273	1060530	1060632	103	2 [1]	[1] 5	yccE	YccE family protein
*	*	÷	NZ_CP009273	1087951	1087963	13	2 [0]	[0] 2	pgaA/dgcT	poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
*	*	÷	NZ_CP009273	1088027	1088193	167	2 [0]	[0] 2	pgaA/dgcT	poly‑beta‑1,6 N‑acetyl‑D‑glucosamine export porin PgaA/GGDEF domain‑containing protein
*	*	÷	NZ_CP009273	1089193	1089279	87	2 [0]	[1] 2	dgcT	GGDEF domain‑containing protein
*	*	÷	NZ_CP009273	1091351	1091365	15	2 [1]	[0] 2	BW25113_RS05360	hypothetical protein
*	*	÷	NZ_CP009273	1091430	1091435	6	2 [0]	[0] 2	BW25113_RS05360	hypothetical protein
*	*	÷	NZ_CP009273	1098718	1098923	206	2 [1]	[0] 2	csgD/csgB	biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
*	*	÷	NZ_CP009273	1098970	1099016	47	2 [0]	[1] 2	csgD/csgB	biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
*	*	÷	NZ_CP009273	1099391	1099401	11	2 [0]	[1] 2	csgD/csgB	biofilm master transcriptional regulator CsgD/curli minor subunit CsgB
*	*	÷	NZ_CP009273	1104549	1104560	12	2 [0]	[0] 2	mdoC/mdoG	glucans biosynthesis protein MdoC/glucans biosynthesis protein MdoG
*	*	÷	NZ_CP009273	1109041	1109119	79	4 [1]	[0] 2	yceK	YceK/YidQ family lipoprotein
*	*	÷	NZ_CP009273	1116814	1116830	17	2 [1]	[1] 2	dinI	DNA damage‑inducible protein I
*	*	÷	NZ_CP009273	1116957	1116985	29	2 [0]	[1] 2	dinI/pyrC	DNA damage‑inducible protein I/dihydroorotase
*	*	÷	NZ_CP009273	1124715	1124771	57	2 [1]	[0] 2	murJ	murein biosynthesis integral membrane protein MurJ
*	*	÷	NZ_CP009273	1136495	1136556	62	2 [1]	[1] 2	flgL/rne	flagellar hook‑associated protein FlgL/ribonuclease E
*	*	÷	NZ_CP009273	1139193	1139277	85	2 [1]	[1] 2	rne	ribonuclease E
*	*	÷	NZ_CP009273	1144740	1144811	72	2 [1]	[1] 3	fabH	beta‑ketoacyl‑ACP synthase III
*	*	÷	NZ_CP009273	1160476	1160523	48	2 [1]	[0] 2	nagZ	beta‑N‑acetylhexosaminidase
*	*	÷	NZ_CP009273	1161489	1161601	113	6 [0]	[1] 2	[ndh]	[ndh]
*	*	÷	NZ_CP009273	1162459	1162484	26	2 [1]	[1] 2	ndh	NADH‑quinone dehydrogenase
*	*	÷	NZ_CP009273	1164368	1164458	91	2 [0]	[1] 3	comR/bhsA	TetR family copper‑responsive transcriptional repressor ComR/multiple stress resistance protein BhsA
*	*	÷	NZ_CP009273	1165761	1165825	65	2 [1]	[1] 2	ldtC	L,D‑transpeptidase LdtC
*	*	÷	NZ_CP009273	1176120	1176149	30	2 [0]	[1] 2	ycfZ	TPM domain‑containing protein
*	*	÷	NZ_CP009273	1176601	1176613	13	2 [1]	[0] 2	ycfZ	TPM domain‑containing protein
*	*	÷	NZ_CP009273	1192296	1192329	34	3 [0]	[0] 3	[ymfD]	[ymfD]
*	*	÷	NZ_CP009273	1192724	1192842	119	2 [1]	[0] 2	ymfD	class I SAM‑dependent methyltransferase
*	*	÷	NZ_CP009273	1192954	1193307	354	2 [1]	[1] 2	[ymfD]–[BW25113_RS05920]	[ymfD],[BW25113_RS05920]
*	*	÷	NZ_CP009273	1193703	1193798	96	2 [1]	[0] 2	BW25113_RS05920/lit	hypothetical protein/cell death peptidase Lit
*	*	÷	NZ_CP009273	1193891	1193948	58	2 [0]	[0] 2	BW25113_RS05920/lit	hypothetical protein/cell death peptidase Lit
*	*	÷	NZ_CP009273	1205683	1205721	39	2 [1]	[1] 2	[pinE]	[pinE]
*	*	÷	NZ_CP009273	1205797	1205843	47	2 [1]	[0] 2	[mcrA]	[mcrA]
*	*	÷	NZ_CP009273	1206587	1206703	117	3 [1]	[1] 2	[mcrA]	[mcrA]
*	*	÷	NZ_CP009273	1207491	1207622	132	2 [1]	[1] 3	iraM/BW25113_RS25985	anti‑adapter protein IraM/protein YmgK
*	*	÷	NZ_CP009273	1207805	1207833	29	2 [0]	[1] 3	BW25113_RS25985/BW25113_RS25535	protein YmgK/hypothetical protein
*	*	÷	NZ_CP009273	1207924	1208059	136	3 [1]	[0] 2	[BW25113_RS25535]	[BW25113_RS25535]
*	*	÷	NZ_CP009273	1208118	1208202	85	2 [0]	[1] 2	[ycgX]	[ycgX]
*	*	÷	NZ_CP009273	1210191	1210206	16	2 [0]	[0] 2	bluF	blue light‑responsive regulator BluF
*	*	÷	NZ_CP009273	1210309	1210319	11	3 [1]	[0] 3	bluF	blue light‑responsive regulator BluF
*	*	÷	NZ_CP009273	1211116	1211226	111	3 [1]	[1] 2	bluF/ycgZ	blue light‑responsive regulator BluF/regulatory protein YcgZ
*	*	÷	NZ_CP009273	1211757	1211847	91	2 [1]	[1] 2	[ymgA]–[ariR]	[ymgA],[ariR]
*	*	÷	NZ_CP009273	1211951	1212005	55	2 [0]	[1] 3	ariR	biofilm/acid‑resistance regulator AriR
*	*	÷	NZ_CP009273	1212105	1212163	59	2 [0]	[1] 2	ariR/BW25113_RS06060	biofilm/acid‑resistance regulator AriR/hypothetical protein
*	*	÷	NZ_CP009273	1214868	1214981	114	2 [1]	[1] 2	BW25113_RS06070/BW25113_RS25990	hypothetical protein/autotransporter outer membrane beta‑barrel domain‑containing protein
*	*	÷	NZ_CP009273	1218562	1218577	16	2 [0]	[1] 2	BW25113_RS06100	hypothetical protein
*	*	÷	NZ_CP009273	1218655	1218706	52	2 [1]	[0] 2	BW25113_RS06100/BW25113_RS23645	hypothetical protein/hypothetical protein
*	*	÷	NZ_CP009273	1251605	1251642	38	2 [0]	[0] 2	ycgV/ychF	autotransporter outer membrane beta‑barrel domain‑containing protein/redox‑regulated ATPase YchF
*	*	÷	NZ_CP009273	1253279	1253289	11	2 [0]	[1] 3	ychF/pth	redox‑regulated ATPase YchF/aminoacyl‑tRNA hydrolase
*	*	÷	NZ_CP009273	1255803	1255823	21	2 [1]	[1] 8	dauA	C4‑dicarboxylic acid transporter DauA
*	*	÷	NZ_CP009273	1267308	1267393	86	3 [1]	[1] 2	chaA/chaB	sodium‑potassium/proton antiporter ChaA/putative cation transport regulator ChaB
*	*	÷	NZ_CP009273	1268538	1268566	29	2 [1]	[1] 2	chaC	glutathione‑specific gamma‑glutamylcyclotransferase
*	*	÷	NZ_CP009273	1272407	1272443	37	3 [1]	[1] 2	narX	nitrate/nitrite two‑component system sensor histidine kinase NarX
*	*	÷	NZ_CP009273	1274604	1274721	118	2 [1]	[1] 2	narK	nitrate transporter NarK
*	*	÷	NZ_CP009273	1274916	1275002	87	3 [1]	[1] 3	narK/narG	nitrate transporter NarK/nitrate reductase subunit alpha
*	*	÷	NZ_CP009273	1275113	1275162	50	2 [1]	[1] 2	narK/narG	nitrate transporter NarK/nitrate reductase subunit alpha
*	*	÷	NZ_CP009273	1287844	1287912	69	3 [1]	[1] 2	galU/hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS
*	*	÷	NZ_CP009273	1293722	1293732	11	2 [0]	[0] 2	adhE/ychE	bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
*	*	÷	NZ_CP009273	1293854	1293963	110	2 [1]	[0] 2	adhE/ychE	bifunctional acetaldehyde‑CoA/alcohol dehydrogenase/protein YchT
*	*	÷	NZ_CP009273	1297201	1297211	11	2 [1]	[0] 2	oppB	oligopeptide ABC transporter permease OppB
*	*	÷	NZ_CP009273	1305436	1305533	98	2 [1]	[1] 2	tonB	TonB system transport protein TonB
*	*	÷	NZ_CP009273	1310072	1310079	8	3 [0]	[0] 2	yciF/yciG	ferritin‑like domain‑containing protein/general stress protein
*	*	÷	NZ_CP009273	1310438	1310464	27	2 [1]	[1] 2	yciG/trpA	general stress protein/tryptophan synthase subunit alpha
*	*	÷	NZ_CP009273	1311604	1311619	16	3 [1]	[1] 2	trpB	tryptophan synthase subunit beta
*	*	÷	NZ_CP009273	1314959	1315002	44	2 [1]	[0] 2	trpD	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD
*	*	÷	NZ_CP009273	1317277	1317285	9	2 [0]	[1] 2	trpE/trpL	anthranilate synthase component I/trp operon leader peptide
*	*	÷	NZ_CP009273	1320874	1320929	56	2 [0]	[1] 2	[yciQ]	[yciQ]
*	*	÷	NZ_CP009273	1327308	1327325	18	2 [1]	[1] 2	topA	type I DNA topoisomerase
*	*	÷	NZ_CP009273	1327553	1327614	62	2 [1]	[1] 4	topA	type I DNA topoisomerase
*	*	÷	NZ_CP009273	1327981	1328026	46	4 [0]	[1] 2	topA/cysB	type I DNA topoisomerase/HTH‑type transcriptional regulator CysB
*	*	÷	NZ_CP009273	1329154	1329164	11	6 [0]	[0] 2	cysB/ymiA	HTH‑type transcriptional regulator CysB/YmiA family putative membrane protein
*	*	÷	NZ_CP009273	1329688	1329757	70	2 [0]	[1] 2	[BW25113_RS06660]	[BW25113_RS06660]
*	*	÷	NZ_CP009273	1342201	1342206	6	4 [0]	[0] 2	rnb	exoribonuclease II
*	*	÷	NZ_CP009273	1350870	1351020	151	2 [1]	[1] 2	sapA	peptide ABC transporter substrate‑binding protein SapA
*	*	÷	NZ_CP009273	1360886	1360926	41	3 [1]	[1] 2	puuE	4‑aminobutyrate transaminase
*	*	÷	NZ_CP009273	1363739	1363761	23	2 [1]	[0] 2	pspD	phage shock protein PspD
*	*	÷	NZ_CP009273	1374908	1374928	21	2 [0]	[1] 2	pgmB	beta‑phosphoglucomutase
*	*	÷	NZ_CP009273	1379269	1379294	26	3 [1]	[0] 2	ycjX	YcjX family protein
*	*	÷	NZ_CP009273	1387338	1387373	36	2 [1]	[1] 2	pgrR/mppA	DNA‑binding transcriptional regulator PgrR/murein tripeptide ABC transporter substrate‑binding protein MppA
*	*	÷	NZ_CP009273	1389950	1390027	78	3 [1]	[1] 2	ynaI	low conductance mechanosensitive channel YnaI
*	*	÷	NZ_CP009273	1398872	1398950	79	3 [1]	[1] 3	abgA/abgR	p‑aminobenzoyl‑glutamate hydrolase subunit AbgA/LysR family transcriptional regulator
*	*	÷	NZ_CP009273	1407776	1407816	41	2 [1]	[1] 2	[rcbA]	[rcbA]
*	*	÷	NZ_CP009273	1408162	1408177	16	2 [0]	[1] 2	ralR	type I toxin‑antitoxin system endodeoxyribonuclease toxin RalR
*	*	÷	NZ_CP009273	1418253	1418263	11	2 [1]	[0] 2	trkG	Trk system potassium transporter TrkG
*	*	÷	NZ_CP009273	1418818	1418848	31	2 [1]	[0] 2	trkG	Trk system potassium transporter TrkG
*	*	÷	NZ_CP009273	1420934	1421002	69	2 [0]	[1] 3	ynaA	phage tail length tape measure family protein
*	*	÷	NZ_CP009273	1428848	1428924–1428916	69–77	3 [1]	[1] 3	BW25113_RS25575/uspF	hypothetical protein/universal stress protein UspF
*	*	÷	NZ_CP009273	1431159	1431270	112	2 [0]	[0] 2	ompN/nifJ	porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
*	*	÷	NZ_CP009273	1431307	1431366	60	2 [0]	[0] 2	ompN/nifJ	porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase
*	*	÷	NZ_CP009273	1433177	1433178	2	2 [0]	[1] 2	nifJ	pyruvate:ferredoxin (flavodoxin) oxidoreductase
*	*	÷	NZ_CP009273	1435970	1436019	50	2 [1]	[1] 2	[hslJ]	[hslJ]
*	*	÷	NZ_CP009273	1437108	1437185	78	2 [0]	[0] 2	ldhA/ydbH	D‑lactate dehydrogenase/YdbH family protein
*	*	÷	NZ_CP009273	1437657	1437667	11	3 [0]	[0] 6	ydbH	YdbH family protein
*	*	÷	NZ_CP009273	1448101	1448184	84	2 [0]	[1] 2	[paaA]	[paaA]
*	*	÷	NZ_CP009273	1453607	1453643	37	2 [1]	[1] 2	paaC	3‑hydroxyacyl‑CoA dehydrogenase PaaC
*	*	÷	NZ_CP009273	1455035	1455042	8	2 [1]	[0] 3	paaI	hydroxyphenylacetyl‑CoA thioesterase PaaI
*	*	÷	NZ_CP009273	1459372	1459542	171	2 [0]	[1] 2	BW25113_RS25580	BW25113_RS25580
*	*	÷	NZ_CP009273	1477261	1477302	42	3 [1]	[1] 2	azoR/hrpA	FMN‑dependent NADH‑azoreductase/ATP‑dependent RNA helicase HrpA
*	*	÷	NZ_CP009273	1489375	1489440	66	2 [1]	[1] 3	ydcI/ydcJ	LysR substrate‑binding domain‑containing protein/VOC family protein
*	*	÷	NZ_CP009273	1494791	1494815	25	3 [1]	[1] 2	ydcK/tehA	YdcK family protein/dicarboxylate transporter/tellurite‑resistance protein TehA
*	*	÷	NZ_CP009273	1495804	1495858	55	2 [0]	[1] 2	[tehA]–[tehB]	[tehA],[tehB]
*	*	÷	NZ_CP009273	1521141	1521224	84	2 [1]	[1] 2	[yncH]	[yncH]
*	*	÷	NZ_CP009273	1521314	1521366	53	2 [1]	[1] 2	yncH	YncH family protein
*	*	÷	NZ_CP009273	1521526	1521615	90	2 [1]	[1] 2	yncH/BW25113_RS07645	YncH family protein/RHS repeat protein
*	*	÷	NZ_CP009273	1521738	1521806	69	2 [0]	[0] 5	yncH/BW25113_RS07645	YncH family protein/RHS repeat protein
*	*	÷	NZ_CP009273	1521903	1521941	39	3 [1]	[1] 3	yncH/BW25113_RS07645	YncH family protein/RHS repeat protein
*	*	÷	NZ_CP009273	1524387	1524418	32	2 [0]	[0] 2	[BW25113_RS26145]	[BW25113_RS26145]
*	*	÷	NZ_CP009273	1524457	1524472	16	2 [0]	[0] 5	BW25113_RS26145	hypothetical protein
*	*	÷	NZ_CP009273	1524588	1524728	141	3 [0]	[0] 2	BW25113_RS25600	protein YncO
*	*	÷	NZ_CP009273	1525307	1525502	196	2 [1]	[1] 4	BW25113_RS07655	ISAs1 family transposase
*	*	÷	NZ_CP009273	1526002	1526077	76	2 [0]	[1] 2	[BW25113_RS07660]	[BW25113_RS07660]
*	*	÷	NZ_CP009273	1534628	1534664	37	2 [1]	[1] 2	narZ	nitrate reductase Z subunit alpha
*	*	÷	NZ_CP009273	1538906	1538962	57	3 [1]	[1] 3	BW25113_RS07710	leucine‑rich repeat domain‑containing protein
*	*	÷	NZ_CP009273	1539201	1539262	62	3 [1]	[1] 2	BW25113_RS07710	leucine‑rich repeat domain‑containing protein
*	*	÷	NZ_CP009273	1539469	1539508	40	3 [1]	[0] 2	BW25113_RS07710	leucine‑rich repeat domain‑containing protein
*	*	÷	NZ_CP009273	1540252	1540517	266	2 [1]	[1] 2	[yddL]	[yddL]
*	*	÷	NZ_CP009273	1550659	1550740	82	4 [1]	[1] 2	bdm/osmC	biofilm‑dependent modulation protein/peroxiredoxin OsmC
*	*	÷	NZ_CP009273	1557450	1557484	35	2 [1]	[1] 3	ddpX/dosP	D‑alanyl‑D‑alanine dipeptidase/oxygen‑sensing cyclic‑di‑GMP phosphodiesterase
*	*	÷	NZ_CP009273	1566290	1566324	35	2 [1]	[0] 2	[gadB]	[gadB]
*	*	÷	NZ_CP009273	1566485	1566485	1	2 [0]	[0] 2	gadB/pqqL	glutamate decarboxylase/insulinase family protein
*	*	÷	NZ_CP009273	1566550	1566581	32	2 [0]	[1] 2	gadB/pqqL	glutamate decarboxylase/insulinase family protein
*	*	÷	NZ_CP009273	1573626	1573708	83	3 [1]	[1] 2	yddA/BW25113_RS25610	ABC transporter ATP‑binding protein/permease/protein YneP
*	*	÷	NZ_CP009273	1575567	1575589	23	2 [1]	[0] 2	ydeN	sulfatase
*	*	÷	NZ_CP009273	1576792	1576994	203	2 [1]	[0] 2	ydeN/ydeO	sulfatase/acid stress response transcriptional regulator YdeO
*	*	÷	NZ_CP009273	1577060	1577098	39	2 [0]	[1] 3	ydeN/ydeO	sulfatase/acid stress response transcriptional regulator YdeO
*	*	÷	NZ_CP009273	1580838	1581004	167	2 [1]	[0] 2	ydeP/ydeQ	acid resistance putative oxidoreductase YdeP/fimbrial protein
*	*	÷	NZ_CP009273	1581508	1581541	34	3 [0]	[1] 3	ydeQ	fimbrial protein
*	*	÷	NZ_CP009273	1581991	1582006	16	3 [1]	[0] 4	[ydeQ]	[ydeQ]
*	*	÷	NZ_CP009273	1584175	1584195	21	5 [1]	[1] 3	ydeT	fimbria/pilus outer membrane usher protein
*	*	÷	NZ_CP009273	1592428	1592593	166	2 [1]	[0] 2	BW25113_RS07915/lsrK	ECSE_1600 family autotransporter/autoinducer‑2 kinase
*	*	÷	NZ_CP009273	1592669	1592679	11	2 [0]	[1] 2	BW25113_RS07915/lsrK	ECSE_1600 family autotransporter/autoinducer‑2 kinase
*	*	÷	NZ_CP009273	1599951	1599971	21	2 [1]	[1] 2	lsrB	autoinducer 2 ABC transporter substrate‑binding protein LsrB
*	*	÷	NZ_CP009273	1609000	1609031	32	2 [1]	[1] 5	sad/yneJ	succinate‑semialdehyde dehydrogenase/LysR family transcriptional regulator
*	*	÷	NZ_CP009273	1614953	1614982	30	2 [1]	[0] 2	eamA	O‑acetylserine/cysteine exporter
*	*	÷	NZ_CP009273	1618759	1619008	250	2 [0]	[1] 2	ydeI/ydeJ	YdeI family stress tolerance OB fold protein/2‑oxo‑tetronate isomerase
*	*	÷	NZ_CP009273	1621560	1621581	22	2 [1]	[1] 2	dcp	peptidyl‑dipeptidase Dcp
*	*	÷	NZ_CP009273	1623061	1623078	18	2 [1]	[0] 2	ydfH	DNA‑binding transcriptional regulator rspR
*	*	÷	NZ_CP009273	1626874–1626894	1626949	56–76	2 [1]	[1] 2	ydfJ/BW25113_RS25615	MHS family MFS transporter/hypothetical protein
*	*	÷	NZ_CP009273	1631288	1631340	53	4 [1]	[1] 2	[ydfO]	[ydfO]
*	*	÷	NZ_CP009273	1631431	1631519	89	2 [1]	[1] 2	ydfO	DUF1398 domain‑containing protein
*	*	÷	NZ_CP009273	1631858	1632014	157	3 [1]	[1] 3	[gnsB]	[gnsB]
*	*	÷	NZ_CP009273	1632954	1633091	138	2 [1]	[1] 2	cspI/rzpQ	cold shock protein CspI/DUF2514 domain‑containing protein
*	*	÷	NZ_CP009273	1633182	1633288	107	3 [0]	[1] 2	[rzpQ]	[rzpQ]
*	*	÷	NZ_CP009273	1634945	1635037	93	2 [1]	[0] 3	essD/ynfU	phage lysis protein EssD/putative zinc‑binding protein YnfU
*	*	÷	NZ_CP009273	1635220	1635285	66	3 [1]	[0] 4	[ynfU]	[ynfU]
*	*	÷	NZ_CP009273	1636468	1636548	81	2 [1]	[1] 3	[BW25113_RS25625]	[BW25113_RS25625]
*	*	÷	NZ_CP009273	1652272	1652330	59	2 [0]	[1] 2	[ynfE]	[ynfE]
*	*	÷	NZ_CP009273	1671808	1671815	8	2 [0]	[0] 3	pntA	Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha
*	*	÷	NZ_CP009273	1672426	1672481	56	5 [1]	[0] 2	pntA/ydgH	Re/Si‑specific NAD(P)(+) transhydrogenase subunit alpha/DUF1471 family protein YdgH
*	*	÷	NZ_CP009273	1673533	1673713	181	2 [1]	[1] 2	[ydgH]	[ydgH]
*	*	÷	NZ_CP009273	1673842	1673885	44	2 [1]	[1] 2	ydgI	amino acid permease
*	*	÷	NZ_CP009273	1677710	1677756	47	2 [1]	[1] 2	rstB	two‑component system sensor histidine kinase RstB
*	*	÷	NZ_CP009273	1677920	1677942	23	2 [0]	[1] 3	rstB	two‑component system sensor histidine kinase RstB
*	*	÷	NZ_CP009273	1685061	1685086	26	2 [1]	[0] 2	ydgA	YdgA family protein
*	*	÷	NZ_CP009273	1736424	1736464	41	2 [1]	[1] 3	cfa	cyclopropane fatty acyl phospholipid synthase
*	*	÷	NZ_CP009273	1744303	1744323	21	3 [1]	[0] 2	ydhU	thiosulfate reductase cytochrome B subunit
*	*	÷	NZ_CP009273	1748936	1749125	190	2 [0]	[1] 2	ydhY/fumD	ferredoxin‑like protein/fumarate hydratase FumD
*	*	÷	NZ_CP009273	1764581	1764697	117	2 [1]	[1] 2	[rprA]	[rprA]
*	*	÷	NZ_CP009273	1769777	1769859	83	2 [1]	[1] 2	[ydiF]	[ydiF]
*	*	÷	NZ_CP009273	1772890	1773113	224	4 [1]	[1] 2	ydiP	AraC family transcriptional regulator
*	*	÷	NZ_CP009273	1781640	1781675	36	2 [1]	[1] 2	ppsA/ppsR	phosphoenolpyruvate synthase/posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR
*	*	÷	NZ_CP009273	1783817	1783883	67	3 [1]	[1] 2	[hemP]	[hemP]
*	*	÷	NZ_CP009273	1797606	1797667	62	3 [1]	[1] 5	espL1	type III secretion system effector EspL1
*	*	÷	NZ_CP009273	1800463	1800566	104	2 [1]	[1] 2	ydiY/pfkB	YdiY family protein/6‑phosphofructokinase II
*	*	÷	NZ_CP009273	1803013	1803016	4	2 [0]	[0] 2	yniB	YniB family protein
*	*	÷	NZ_CP009273	1806960	1806991	32	2 [1]	[0] 2	BW25113_RS09050	hypothetical protein
*	*	÷	NZ_CP009273	1807098	1807135	38	2 [0]	[0] 5	BW25113_RS09050	hypothetical protein
*	*	÷	NZ_CP009273	1807384	1807567	184	3 [1]	[1] 2	[BW25113_RS09050]	[BW25113_RS09050]
*	*	÷	NZ_CP009273	1809220	1809243	24	3 [1]	[1] 2	katE	catalase HPII
*	*	÷	NZ_CP009273	1812442	1812460	19	2 [1]	[0] 2	celF	6‑phospho‑beta‑glucosidase
*	*	÷	NZ_CP009273	1815541	1815597	57	2 [1]	[1] 2	[chbB]	[chbB]
*	*	÷	NZ_CP009273	1826266	1826293	28	3 [0]	[1] 3	astC/xthA	succinylornithine/acetylornithine transaminase/exodeoxyribonuclease III
*	*	÷	NZ_CP009273	1838977	1839064	88	2 [1]	[1] 2	ynjI	DUF1266 domain‑containing protein
*	*	÷	NZ_CP009273	1864436	1864441	6	2 [0]	[0] 2	yeaH	YeaH/YhbH family protein
*	*	÷	NZ_CP009273	1864668	1864734	67	3 [0]	[1] 2	cdgI	GGDEF domain‑containing protein
*	*	÷	NZ_CP009273	1864973	1865018	46	2 [1]	[0] 2	cdgI	GGDEF domain‑containing protein
*	*	÷	NZ_CP009273	1873122	1873208	87	2 [0]	[1] 2	[yoaK]–yoaJ	[yoaK],yoaJ
*	*	÷	NZ_CP009273	1873341	1873376	36	3 [1]	[1] 2	yeaQ	GlsB/YeaQ/YmgE family stress response membrane protein
*	*	÷	NZ_CP009273	1874305	1874335	31	2 [1]	[1] 2	yeaR/leuE	DUF1971 domain‑containing protein YeaR/leucine efflux protein LeuE
*	*	÷	NZ_CP009273	1882353	1882402	50	2 [1]	[1] 2	fadD	long‑chain‑fatty‑acid‑‑CoA ligase FadD
*	*	÷	NZ_CP009273	1888041	1888114	74	3 [1]	[1] 2	yoaB/yoaC	RidA family protein/DUF1889 family protein
*	*	÷	NZ_CP009273	1888356	1888390	35	2 [1]	[1] 2	[yoaC]	[yoaC]
*	*	÷	NZ_CP009273	1891580	1891588	9	3 [1]	[0] 2	sdaA	L‑serine ammonia‑lyase
*	*	÷	NZ_CP009273	1899370	1899375	6	2 [1]	[0] 2	yobD	DUF986 family protein
*	*	÷	NZ_CP009273	1899590	1899694	105	2 [0]	[1] 2	yobD/mntP	DUF986 family protein/manganese efflux pump MntP
*	*	÷	NZ_CP009273	1936613	1936662	50	2 [1]	[1] 2	znuA	zinc ABC transporter substrate‑binding protein ZnuA
*	*	÷	NZ_CP009273	1940369	1940511	143	3 [1]	[0] 2	yobI–[yebB]	yobI,[yebB]
*	*	÷	NZ_CP009273	1952498	1952622	125	3 [1]	[0] 2	torY/cutC	NapC/NirT family cytochrome c/copper homeostasis protein CutC
*	*	÷	NZ_CP009273	1973108	1973144	37	2 [0]	[1] 2	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
*	*	÷	NZ_CP009273	1979683	1979758	76	2 [1]	[1] 5	araF/ftnB	arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
*	*	÷	NZ_CP009273	1980165	1980229	65	3 [1]	[0] 2	araF/ftnB	arabinose ABC transporter substrate‑binding protein AraF/non‑heme ferritin‑like protein
*	*	÷	NZ_CP009273	1981537	1981594	58	2 [0]	[1] 3	azuC/yecR	stress response protein AzuC/YecR‑like lipofamily protein
*	*	÷	NZ_CP009273	1987133	1987207	75	2 [1]	[1] 3	uvrC	excinuclease ABC subunit UvrC
*	*	÷	NZ_CP009273	1989112	1989211	100	2 [1]	[1] 2	[BW25113_RS25650]	[BW25113_RS25650]
*	*	÷	NZ_CP009273	1990358	1990401	44	2 [1]	[0] 2	sdiA/yecC	transcriptional regulator SdiA/L‑cystine ABC transporter ATP‑binding protein YecC
*	*	÷	NZ_CP009273	2001019	2001061	43	2 [1]	[1] 2	amyA	alpha‑amylase
*	*	÷	NZ_CP009273	2005758	2005960	203	2 [1]	[1] 2	[BW25113_RS10120]	[BW25113_RS10120]
*	*	÷	NZ_CP009273	2026101	2026166	66	2 [1]	[1] 2	yedJ	phosphohydrolase
*	*	÷	NZ_CP009273	2027091	2027129	39	2 [1]	[1] 2	drpB/ompC	cell division protein DrpB/porin OmpC
*	*	÷	NZ_CP009273	2027287	2027505	219	3 [1]	[1] 2	drpB/ompC	cell division protein DrpB/porin OmpC
*	*	÷	NZ_CP009273	2028936	2029004	69	2 [1]	[0] 2	ompC/hchA	porin OmpC/protein deglycase HchA
*	*	÷	NZ_CP009273	2033188	2033247	60	2 [1]	[1] 3	msrP	protein‑methionine‑sulfoxide reductase catalytic subunit MsrP
*	*	÷	NZ_CP009273	2034802	2034840	39	2 [0]	[1] 2	msrQ/zinT	protein‑methionine‑sulfoxide reductase heme‑binding subunit MsrQ/metal‑binding protein ZinT
*	*	÷	NZ_CP009273	2050133	2050256	124	2 [1]	[1] 2	amn/yeeN	AMP nucleosidase/YebC/PmpR family DNA‑binding transcriptional regulator
*	*	÷	NZ_CP009273	2051076	2051154	79	2 [1]	[1] 2	yeeN/BW25113_RS10360	YebC/PmpR family DNA‑binding transcriptional regulator/tRNA‑Asn
*	*	÷	NZ_CP009273	2051751	2051762	12	2 [1]	[0] 2	yeeO	toxic metabolite efflux MATE transporter YeeO
*	*	÷	NZ_CP009273	2062036	2062097	62	2 [0]	[1] 2	BW25113_RS10415/BW25113_RS24005	IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein
*	*	÷	NZ_CP009273	2078963	2079052	90	2 [1]	[0] 2	[yeeE]	[yeeE]
*	*	÷	NZ_CP009273	2080618	2080650	33	2 [1]	[1] 2	yoeI/yeeY	membrane protein YoeI/LysR substrate‑binding domain‑containing protein
*	*	÷	NZ_CP009273	2083240	2083278	39	2 [1]	[1] 2	yefM/hisL	YoeB‑YefM toxin‑antitoxin system antitoxin YefM/his operon leader peptide
*	*	÷	NZ_CP009273	2092810	2092823	14	3 [0]	[1] 2	ugd	UDP‑glucose 6‑dehydrogenase
*	*	÷	NZ_CP009273	2093085	2093134	50	2 [1]	[1] 3	[ugd]	[ugd]
*	*	÷	NZ_CP009273	2093225	2093278	54	2 [0]	[1] 2	ugd/gndA	UDP‑glucose 6‑dehydrogenase/NADP‑dependent phosphogluconate dehydrogenase
*	*	÷	NZ_CP009273	2094944	2094967	24	2 [0]	[1] 2	wbbL	N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL
*	*	÷	NZ_CP009273	2096913	2096972	60	3 [1]	[1] 2	wbbK	glycosyltransferase family 1 protein
*	*	÷	NZ_CP009273	2097403	2097610	208	2 [1]	[1] 3	wbbK	glycosyltransferase family 1 protein
*	*	÷	NZ_CP009273	2097947	2097958	12	2 [1]	[1] 2	wbbK	glycosyltransferase family 1 protein
*	*	÷	NZ_CP009273	2098953	2099010	58	2 [1]	[1] 2	wbbI	beta‑1,6‑galactofuranosyltransferase
*	*	÷	NZ_CP009273	2099607	2099701	95	2 [1]	[1] 2	wzy	O16 family O‑antigen polymerase
*	*	÷	NZ_CP009273	2100135	2100256	122	2 [1]	[0] 2	wzy	O16 family O‑antigen polymerase
*	*	÷	NZ_CP009273	2100875	2100875	1	2 [0]	[0] 2	glf	UDP‑galactopyranose mutase
*	*	÷	NZ_CP009273	2101604	2101623	20	2 [0]	[0] 4	glf	UDP‑galactopyranose mutase
*	*	÷	NZ_CP009273	2118518	2118558	41	2 [1]	[1] 2	wcaI	colanic acid biosynthesis fucosyltransferase WcaI
*	*	÷	NZ_CP009273	2131136	2131162	27	2 [0]	[1] 3	wza/yegH	polysaccharide export protein Wza/TerC family protein
*	*	÷	NZ_CP009273	2144481	2144659	179	2 [1]	[1] 2	yegI/yegJ	protein kinase YegI/DUF2314 domain‑containing protein
*	*	÷	NZ_CP009273	2161065	2161097	33	2 [1]	[1] 3	[BW25113_RS24065]	[BW25113_RS24065]
*	*	÷	NZ_CP009273	2161818	2161881	64	2 [1]	[1] 3	BW25113_RS10880/yegS	hypothetical protein/lipid kinase YegS
*	*	÷	NZ_CP009273	2170677	2170757	81	2 [1]	[1] 2	[gatY]	[gatY]
*	*	÷	NZ_CP009273	2182973	2183035	63	6 [0]	[1] 3	yehB	fimbrial biogenesis outer membrane usher protein
*	*	÷	NZ_CP009273	2185124	2185166	43	3 [1]	[0] 2	[yehD]	[yehD]
*	*	÷	NZ_CP009273	2185695	2185918	224	3 [0]	[1] 2	[yehD]	[yehD]
*	*	÷	NZ_CP009273	2197735	2197781	47	2 [0]	[1] 2	[BW25113_RS11050]	[BW25113_RS11050]
*	*	÷	NZ_CP009273	2222525	2222548	24	3 [1]	[1] 2	[yohP]	[yohP]
*	*	÷	NZ_CP009273	2228478	2228521	44	2 [1]	[1] 2	preT	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT
*	*	÷	NZ_CP009273	2240124	2240171	48	2 [1]	[1] 2	cirA	catecholate siderophore receptor CirA
*	*	÷	NZ_CP009273	2243093	2243159	67	6 [1]	[1] 2	[yeiE]	[yeiE]
*	*	÷	NZ_CP009273	2245210	2245244	35	2 [1]	[1] 3	yeiI	sugar kinase
*	*	÷	NZ_CP009273	2297106	2297176	71	2 [1]	[1] 2	BW25113_RS25870	hypothetical protein
*	*	÷	NZ_CP009273	2297306	2297411	106	3 [1]	[1] 2	[eco]	[eco]
*	*	÷	NZ_CP009273	2300316	2300389	74	3 [1]	[1] 3	mqo/yojI	malate dehydrogenase (quinone)/microcin J25 efflux ABC transporter YojI
*	*	÷	NZ_CP009273	2316792	2316821	30	4 [1]	[1] 3	atoC/atoD	acetoacetate metabolism transcriptional regulator AtoC/acetate CoA‑transferase subunit alpha
*	*	÷	NZ_CP009273	2357851	2357931	81	3 [1]	[1] 2	yfaZ/nudI	YfaZ family protein/nucleoside triphosphatase NudI
*	*	÷	NZ_CP009273	2373776	2373788	13	2 [1]	[1] 2	menF	isochorismate synthase MenF
*	*	÷	NZ_CP009273	2376904	2377090	187	3 [0]	[1] 2	elaD	deubiquitinase ElaD
*	*	÷	NZ_CP009273	2377307	2377407	101	2 [1]	[1] 2	[elaD]	[elaD]
*	*	÷	NZ_CP009273	2379166	2379391	226	3 [1]	[0] 2	[yfbK]–[yfbL]	[yfbK],[yfbL]
*	*	÷	NZ_CP009273	2380279	2380344	66	4 [0]	[1] 2	[yfbL]	[yfbL]
*	*	÷	NZ_CP009273	2381889	2381928	40	2 [1]	[0] 2	[BW25113_RS11875]	[BW25113_RS11875]
*	*	÷	NZ_CP009273	2386186	2386218	33	2 [1]	[1] 4	nuoM	NADH‑quinone oxidoreductase subunit M
*	*	÷	NZ_CP009273	2400623	2400640	18	2 [1]	[0] 2	lrhA/alaA	transcriptional regulator LrhA/alanine transaminase AlaA
*	*	÷	NZ_CP009273	2400792	2400856	65	2 [1]	[1] 3	lrhA/alaA	transcriptional regulator LrhA/alanine transaminase AlaA
*	*	÷	NZ_CP009273	2449295	2449489	195	2 [1]	[1] 2	yfcV/sixA	fimbrial protein/phosphohistidine phosphatase SixA
*	*	÷	NZ_CP009273	2456445	2456463	19	2 [1]	[1] 2	fadL/BW25113_RS12235	long‑chain fatty acid transporter FadL/hypothetical protein
*	*	÷	NZ_CP009273	2457527	2457659	133	2 [0]	[1] 3	[BW25113_RS12235]	[BW25113_RS12235]
*	*	÷	NZ_CP009273	2462752	2462876	125	2 [0]	[1] 2	BW25113_RS12270	hypothetical protein
*	*	÷	NZ_CP009273	2462927	2463012	86	2 [1]	[0] 2	BW25113_RS12270	hypothetical protein
*	*	÷	NZ_CP009273	2463082	2463190	109	2 [0]	[0] 3	BW25113_RS12270	hypothetical protein
*	*	÷	NZ_CP009273	2463675	2463777	103	2 [1]	[0] 2	BW25113_RS12270	hypothetical protein
*	*	÷	NZ_CP009273	2463830	2463937	108	2 [0]	[1] 4	BW25113_RS12270	hypothetical protein
*	*	÷	NZ_CP009273	2474895	2474944	50	3 [1]	[1] 2	emrY	multidrug efflux MFS transporter permease subunit EmrY
*	*	÷	NZ_CP009273	2476726	2476827	102	2 [1]	[0] 2	[emrK]	[emrK]
*	*	÷	NZ_CP009273	2486747	2486792	46	3 [0]	[1] 2	frc/yfdX	formyl‑CoA transferase/YfdX family protein
*	*	÷	NZ_CP009273	2491884	2491906	23	3 [1]	[0] 2	alaC/ypdA	alanine transaminase/two‑component system sensor histidine kinase YpdA
*	*	÷	NZ_CP009273	2515858	2515915	58	2 [0]	[1] 2	[BW25113_RS12545]	[BW25113_RS12545]
*	*	÷	NZ_CP009273	2563809	2563838	30	2 [1]	[1] 2	eutE	aldehyde dehydrogenase EutE
*	*	÷	NZ_CP009273	2569299	2569385	87	3 [1]	[1] 2	eutS/maeB	ethanolamine utilization microcompartment protein EutS/NADP‑dependent oxaloacetate‑decarboxylating malate dehydrogenase
*	*	÷	NZ_CP009273	2584433	2584511	79	2 [0]	[0] 4	ypfM/yffB	protein YpfM/ArsC family reductase
*	*	÷	NZ_CP009273	2622396	2622541	146	2 [1]	[0] 2	[BW25113_RS25940]	[BW25113_RS25940]
*	*	÷	NZ_CP009273	2623000	2623147	148	2 [1]	[1] 2	yfgG/yfgH	YfgG family protein/glycine zipper 2TM domain‑containing protein
*	*	÷	NZ_CP009273	2645838	2645852	15	2 [1]	[1] 2	yfhM/sseA	alpha2‑macroglobulin/3‑mercaptopyruvate sulfurtransferase
*	*	÷	NZ_CP009273	2682307	2682348	42	2 [0]	[1] 3	qseG	two‑component system QseEF‑associated lipoprotein QseG
*	*	÷	NZ_CP009273	2684846	2684868	23	2 [1]	[1] 3	qseE/purL	two component system sensor histidine kinase QseE/GlrK/phosphoribosylformylglycinamidine synthase
*	*	÷	NZ_CP009273	2735059	2735117	59	4 [1]	[1] 3	[yfiL]	[yfiL]
*	*	÷	NZ_CP009273	2735208	2735225	18	2 [0]	[1] 3	yfiL/yfiR	DUF2799 domain‑containing protein/YfiR family protein
*	*	÷	NZ_CP009273	2751125	2751232	108	2 [1]	[1] 2	BW25113_RS13685	hypothetical protein
*	*	÷	NZ_CP009273	2751897	2751907	11	2 [0]	[0] 3	BW25113_RS13685	hypothetical protein
*	*	÷	NZ_CP009273	2753596	2753795	200	2 [1]	[0] 2	[yfjI]	[yfjI]
*	*	÷	NZ_CP009273	2766656	2766742	87	2 [1]	[0] 2	[BW25113_RS13770]	[BW25113_RS13770]
*	*	÷	NZ_CP009273	2766892	2766944	53	3 [1]	[1] 3	BW25113_RS13770	hypothetical protein
*	*	÷	NZ_CP009273	2767142	2767174	33	2 [0]	[1] 2	BW25113_RS13770	hypothetical protein
*	*	÷	NZ_CP009273	2767323	2767415	93	2 [1]	[1] 2	BW25113_RS13770	hypothetical protein
*	*	÷	NZ_CP009273	2767742	2767813	72	2 [1]	[1] 2	BW25113_RS13770	hypothetical protein
*	*	÷	NZ_CP009273	2768373	2768431	59	2 [1]	[1] 3	[BW25113_RS13770]	[BW25113_RS13770]
*	*	÷	NZ_CP009273	2776963	2777030	68	2 [0]	[1] 2	[BW25113_RS25705]	[BW25113_RS25705]
*	*	÷	NZ_CP009273	2778051	2778100	50	2 [1]	[1] 3	BW25113_RS25705	DUF5507 domain‑containing protein
*	*	÷	NZ_CP009273	2778398	2778429	32	2 [1]	[1] 2	BW25113_RS25705/BW25113_RS13825	DUF5507 domain‑containing protein/tRNA‑Ile
*	*	÷	NZ_CP009273	2778511	2778623	113	2 [1]	[1] 2	BW25113_RS25705/BW25113_RS13825	DUF5507 domain‑containing protein/tRNA‑Ile
*	*	÷	NZ_CP009273	2779441	2779543	103	2 [1]	[0] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
*	*	÷	NZ_CP009273	2779688	2779733	46	2 [0]	[0] 2	BW25113_RS13825/BW25113_RS26005	tRNA‑Ile/alpha‑amylase family glycosyl hydrolase
*	*	÷	NZ_CP009273	2779798	2779881	84	2 [0]	[0] 2	BW25113_RS26005	alpha‑amylase family glycosyl hydrolase
*	*	÷	NZ_CP009273	2781807	2782022	216	2 [1]	[0] 3	[BW25113_RS26005]	[BW25113_RS26005]
*	*	÷	NZ_CP009273	2782925	2782936	12	3 [1]	[0] 2	csiD	glutarate dioxygenase GlaH
*	*	÷	NZ_CP009273	2790511	2790539	29	3 [0]	[1] 2	yqaE/ygaV	YqaE/Pmp3 family membrane protein/metalloregulator ArsR/SmtB family transcription factor
*	*	÷	NZ_CP009273	2798146	2798233	88	2 [1]	[1] 2	[proV]	[proV]
*	*	÷	NZ_CP009273	2819054	2819145	92	2 [1]	[1] 3	mltB/srlA	lytic murein transglycosylase B/PTS glucitol/sorbitol transporter subunit IIC
*	*	÷	NZ_CP009273	2843847	2843915	69	2 [1]	[1] 3	hycA/hypA	formate hydrogenlyase regulator HycA/hydrogenase maturation nickel metallochaperone HypA
*	*	÷	NZ_CP009273	2877625	2877666	42	2 [1]	[0] 2	casA/cas3	type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
*	*	÷	NZ_CP009273	2877721	2877797	77	2 [0]	[1] 2	casA/cas3	type I‑E CRISPR‑associated protein Cse1/CasA/CRISPR‑associated helicase/endonuclease Cas3
*	*	÷	NZ_CP009273	2897112	2897264	153	2 [1]	[1] 3	ygcE/queE	FGGY‑family carbohydrate kinase/7‑carboxy‑7‑deazaguanine synthase QueE
*	*	÷	NZ_CP009273	2898957	2898992	36	2 [0]	[0] 2	BW25113_RS14445	hypothetical protein
*	*	÷	NZ_CP009273	2921142	2921190	49	2 [1]	[1] 2	ppnN/sdaC	nucleotide 5'‑monophosphate nucleosidase PpnN/HAAAP family serine/threonine permease SdaC
*	*	÷	NZ_CP009273	2975685	2975784	100	2 [1]	[1] 3	araE/kduD	arabinose‑proton symporter AraE/2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD
*	*	÷	NZ_CP009273	2984032	2984079	48	2 [1]	[1] 2	BW25113_RS14825	hypothetical protein
*	*	÷	NZ_CP009273	2984404	2984591	188	4 [1]	[1] 2	BW25113_RS14825/ygeG	hypothetical protein/tetratricopeptide repeat protein
*	*	÷	NZ_CP009273	2985203	2985235	33	3 [1]	[0] 4	ygeG/ygeH	tetratricopeptide repeat protein/HilA family transcriptional regulator YgeH
*	*	÷	NZ_CP009273	2986279	2986295	17	3 [1]	[1] 2	ygeH	HilA family transcriptional regulator YgeH
*	*	÷	NZ_CP009273	2986857	2986914	58	3 [1]	[0] 2	ygeH/BW25113_RS14840	HilA family transcriptional regulator YgeH/hypothetical protein
*	*	÷	NZ_CP009273	2987245	2987277	33	3 [1]	[1] 2	BW25113_RS14840/BW25113_RS14845	hypothetical protein/lytic transglycosylase domain‑containing protein
*	*	÷	NZ_CP009273	2987503	2987519	17	2 [0]	[1] 3	BW25113_RS14845	lytic transglycosylase domain‑containing protein
*	*	÷	NZ_CP009273	2988502	2988647	146	2 [1]	[1] 2	BW25113_RS14850/BW25113_RS26010	response regulator transcription factor/hypothetical protein
*	*	÷	NZ_CP009273	2989074	2989135	62	2 [1]	[1] 2	[BW25113_RS26010]–[BW25113_RS25255]	[BW25113_RS26010],[BW25113_RS25255]
*	*	÷	NZ_CP009273	2999213	2999295	83	5 [1]	[1] 2	ygeV/ygeW	sigma‑54‑dependent Fis family transcriptional regulator/knotted carbamoyltransferase YgeW
*	*	÷	NZ_CP009273	3044341	3044388	48	2 [1]	[1] 2	BW25113_RS25745	protein YqfI
*	*	÷	NZ_CP009273	3072753	3072839	87	2 [1]	[1] 2	cmtB/tkt	PTS mannitol transporter subunit IIA/transketolase
*	*	÷	NZ_CP009273	3106864	3106866	3	2 [0]	[0] 2	yghG/pppA	type II secretion system pilot lipoprotein GspS‑beta/prepilin peptidase PppA
*	*	÷	NZ_CP009273	3112845	3112908	64	3 [1]	[0] 5	sslE/glcA	lipoprotein metalloprotease SslE/glycolate permease GlcA
*	*	÷	NZ_CP009273	3129918	3129985	68	2 [0]	[1] 2	pitB/gss	inorganic phosphate transporter PitB/bifunctional glutathionylspermidine amidase/synthase
*	*	÷	NZ_CP009273	3177006	3177040	35	2 [1]	[1] 2	BW25113_RS25885/ribB	hypothetical protein/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
*	*	÷	NZ_CP009273	3178590	3178767	178	2 [1]	[1] 3	ubiK/ygiL	ubiquinone biosynthesis accessory factor UbiK/fimbrial‑like protein
*	*	÷	NZ_CP009273	3179375	3179418	44	3 [1]	[0] 2	ygiL/BW25113_RS15805	fimbrial‑like protein/IS3‑like element IS2 family transposase
*	*	÷	NZ_CP009273	3221077	3221138	62	2 [1]	[0] 2	ygjI/ygjJ	amino acid permease/protein YgjJ
*	*	÷	NZ_CP009273	3246100	3246212	113	2 [1]	[1] 3	yhaH/yhaI	DUF805 domain‑containing protein/DUF805 domain‑containing protein
*	*	÷	NZ_CP009273	3260520	3260559	40	2 [1]	[1] 2	tdcA/tdcR	transcriptional regulator TdcA/transcriptional activator TdcR
*	*	÷	NZ_CP009273	3260687	3260876	190	2 [1]	[1] 2	[tdcR]	[tdcR]
*	*	÷	NZ_CP009273	3262494	3262708	215	2 [1]	[0] 2	yhaC	YhaC family protein
*	*	÷	NZ_CP009273	3275097	3275165	69	2 [1]	[0] 2	BW25113_RS16255/agaS	amidohydrolase family protein/AgaS family sugar isomerase
*	*	÷	NZ_CP009273	3277460	3277509	50	3 [1]	[0] 2	kbaY/agaB	tagatose‑bisphosphate aldolase subunit KbaY/PTS galactosamine transporter subunit IIB
*	*	÷	NZ_CP009273	3280430	3280467	38	2 [1]	[0] 2	agaI/yraH	galactosamine‑6‑phosphate isomerase/fimbrial protein
*	*	÷	NZ_CP009273	3280520	3280530	11	2 [0]	[0] 2	agaI/yraH	galactosamine‑6‑phosphate isomerase/fimbrial protein
*	*	÷	NZ_CP009273	3280599	3280780	182	2 [0]	[0] 2	agaI/yraH	galactosamine‑6‑phosphate isomerase/fimbrial protein
*	*	÷	NZ_CP009273	3314985	3315012	28	3 [1]	[0] 2	yhbX/BW25113_RS16455	phosphoethanolamine transferase/tRNA‑Leu
*	*	÷	NZ_CP009273	3354269	3354305	37	2 [1]	[0] 2	gltD/gltF	glutamate synthase subunit GltD/DUF1120 domain‑containing protein
*	*	÷	NZ_CP009273	3368045	3368091	47	2 [0]	[1] 3	nanR/dcuC	transcriptional regulator NanR/anaerobic C4‑dicarboxylate transporter DcuC
*	*	÷	NZ_CP009273	3378669	3378812	144	2 [1]	[1] 4	argR/yhcN	transcriptional regulator ArgR/peroxide/acid stress response protein YhcN
*	*	÷	NZ_CP009273	3406886	3406991	106	2 [1]	[0] 2	acrS/acrE	multidrug efflux transporter transcriptional repressor AcrS/multidrug efflux RND transporter periplasmic adaptor subunit AcrE
*	*	÷	NZ_CP009273	3448783	3448836	54	2 [0]	[1] 2	gspA/gspC	type II secretion system protein GspA/type II secretion system protein GspC
*	*	÷	NZ_CP009273	3460360	3460454	95	2 [1]	[1] 2	bfd/chiA	bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme
*	*	÷	NZ_CP009273	3463208	3463221	14	2 [1]	[0] 2	[chiA]	[chiA]
*	*	÷	NZ_CP009273	3463332	3463411	80	2 [0]	[1] 2	chiA/tuf	bifunctional chitinase/lysozyme/elongation factor Tu
*	*	÷	NZ_CP009273	3492586	3492655	70	2 [1]	[1] 3	cysG/yhfL	siroheme synthase CysG/YhfL family protein
*	*	÷	NZ_CP009273	3505726	3505734	9	2 [0]	[1] 2	BW25113_RS17530/trpS	GntR family transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase
*	*	÷	NZ_CP009273	3551498	3551549	52	2 [0]	[1] 2	rtcB/rtcR	RNA‑splicing ligase RtcB/DNA‑binding transcriptional regulator RtcR
*	*	÷	NZ_CP009273	3575087	3575161	75	2 [0]	[1] 3	yhhY/hcp	N‑acetyltransferase/Hcp1 family type VI secretion system effector
*	*	÷	NZ_CP009273	3575392	3575440	49	2 [1]	[0] 2	hcp	Hcp1 family type VI secretion system effector
*	*	÷	NZ_CP009273	3575526	3575536	11	2 [0]	[0] 4	hcp	Hcp1 family type VI secretion system effector
*	*	÷	NZ_CP009273	3575996	3576032	37	3 [1]	[1] 2	hcp	Hcp1 family type VI secretion system effector
*	*	÷	NZ_CP009273	3576462	3576501	40	2 [1]	[0] 2	BW25113_RS17825	YrhA family protein
*	*	÷	NZ_CP009273	3576872–3577545	3577572	28–701	2 [1]	[1] 2	[BW25113_RS17830]–BW25113_RS17830	[BW25113_RS17830],BW25113_RS17830
*	*	÷	NZ_CP009273	3577857	3578076	220	2 [1]	[1] 2	[BW25113_RS25760]	[BW25113_RS25760]
*	*	÷	NZ_CP009273	3591078	3591092	15	4 [0]	[0] 2	livK/panM	high‑affinity branched‑chain amino acid ABC transporter substrate‑binding protein LivK/aspartate 1‑decarboxylase autocleavage activator PanM
*	*	÷	NZ_CP009273	3616853	3616948	96	2 [0]	[1] 2	yhhH	YbbC/YhhH family protein
*	*	÷	NZ_CP009273	3617657	3617713	57	2 [1]	[1] 3	BW25113_RS18035/yhhI	lyase/ISAs1‑like element ISEc1 family transposase
*	*	÷	NZ_CP009273	3626219	3626244	26	2 [1]	[0] 2	BW25113_RS18065	YhiJ/YhiL family protein
*	*	÷	NZ_CP009273	3627362	3627372	11	2 [0]	[1] 2	BW25113_RS18065	YhiJ/YhiL family protein
*	*	÷	NZ_CP009273	3627469	3627515	47	3 [1]	[1] 2	BW25113_RS18065	YhiJ/YhiL family protein
*	*	÷	NZ_CP009273	3630845	3630877	33	2 [1]	[1] 3	yhiN/pitA	NAD(P)/FAD‑dependent oxidoreductase/inorganic phosphate transporter PitA
*	*	÷	NZ_CP009273	3644322	3644351	30	2 [1]	[1] 3	arsC/BW25113_RS18155	glutaredoxin‑dependent arsenate reductase/hypothetical protein
*	*	÷	NZ_CP009273	3647057	3647116	60	2 [1]	[1] 2	BW25113_RS18165/slp	hypothetical protein/outer membrane lipoprotein Slp
*	*	÷	NZ_CP009273	3659357	3659431	75	2 [1]	[1] 3	gadX/gadA	acid resistance transcriptional activator GadX/glutamate decarboxylase
*	*	÷	NZ_CP009273	3721197	3721237	41	3 [0]	[0] 5	BW25113_RS18495/xylB	inner membrane protein YiaB/xylulokinase
*	*	÷	NZ_CP009273	3745305	3745337	33	3 [1]	[1] 3	yiaT/yiaU	MipA/OmpV family protein/LysR family transcriptional regulator
*	*	÷	NZ_CP009273	3762973	3763111	139	3 [1]	[1] 3	BW25113_RS26240	Imm57 family immunity protein
*	*	÷	NZ_CP009273	3763203	3763296	94	2 [0]	[0] 2	BW25113_RS26240/yibH	Imm57 family immunity protein/HlyD family secretion protein
*	*	÷	NZ_CP009273	3787052	3787105	54	4 [0]	[0] 2	yibB/rfaD	protein YibB/ADP‑glyceromanno‑heptose 6‑epimerase
*	*	÷	NZ_CP009273	3790357	3790415	59	2 [1]	[0] 2	waaL	O‑antigen ligase
*	*	÷	NZ_CP009273	3790455	3790634	180	2 [0]	[1] 2	waaL	O‑antigen ligase
*	*	÷	NZ_CP009273	3792518	3792725	208	4 [0]	[0] 2	[waaU]–[waaZ]	[waaU],[waaZ]
*	*	÷	NZ_CP009273	3792802	3792835	34	2 [0]	[1] 3	waaZ	3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ
*	*	÷	NZ_CP009273	3793536	3793550	15	2 [0]	[0] 3	waaZ	3‑deoxy‑D‑manno‑oct‑2‑ulosonate III transferase WaaZ
*	*	÷	NZ_CP009273	3794212	3794260	49	2 [1]	[1] 2	rfaY	lipopolysaccharide core heptose(II) kinase RfaY
*	*	÷	NZ_CP009273	3794625	3794653	29	2 [1]	[0] 2	rfaJ	lipopolysaccharide 1,2‑glucosyltransferase RfaJ
*	*	÷	NZ_CP009273	3795403	3795455	53	2 [0]	[1] 2	waaO	lipopolysaccharide 3‑alpha‑galactosyltransferase
*	*	÷	NZ_CP009273	3796310	3796332	23	2 [1]	[1] 2	waaO	lipopolysaccharide 3‑alpha‑galactosyltransferase
*	*	÷	NZ_CP009273	3797716	3797905	190	2 [0]	[1] 2	rfaS	LPS core biosynthesis protein RfaS
*	*	÷	NZ_CP009273	3798103	3798259	157	4 [1]	[0] 2	rfaS	LPS core biosynthesis protein RfaS
*	*	÷	NZ_CP009273	3798358	3798511	154	2 [0]	[0] 2	[rfaS]	[rfaS]
*	*	÷	NZ_CP009273	3830043	3830181	139	3 [1]	[0] 2	BW25113_RS26245/setC	virulence RhuM family protein/sugar efflux transporter
*	*	÷	NZ_CP009273	3900118	3900192	75	2 [1]	[0] 2	bglG/phoU	transcriptional antiterminator BglG/phosphate signaling complex protein PhoU
*	*	÷	NZ_CP009273	3979505	3979517	13	2 [0]	[0] 2	aslA/hemY	arylsulfatase AslA/protoheme IX biogenesis protein HemY
*	*	÷	NZ_CP009273	4037426	4037473	48	2 [1]	[1] 2	dsbA/yihF	thiol:disulfide interchange protein DsbA/YdgA family protein
*	*	÷	NZ_CP009273	4071862	4071920	59	2 [1]	[1] 2	fabY/BW25113_RS26270	fatty acid biosynthesis protein FabY/hypothetical protein
*	*	÷	NZ_CP009273	4080244	4080324	81	3 [1]	[1] 3	fdhD/yiiG	formate dehydrogenase accessory sulfurtransferase FdhD/YiiG family protein
*	*	÷	NZ_CP009273	4086311	4086335	25	3 [1]	[0] 2	frvA/rhaM	PTS fructose transporter subunit IIA/L‑rhamnose mutarotase
*	*	÷	NZ_CP009273	4090639	4090683	45	2 [0]	[1] 2	rhaT/sodA	L‑rhamnose/proton symporter RhaT/superoxide dismutase [Mn]
*	*	÷	NZ_CP009273	4205249	4205277	29	2 [0]	[0] 2	metA/aceB	homoserine O‑succinyltransferase/malate synthase A
*	*	÷	NZ_CP009273	4212404	4212509	106	2 [1]	[1] 2	[espL4]	[espL4]
*	*	÷	NZ_CP009273	4225566	4225710	145	2 [1]	[1] 2	pgi/yjbE	glucose‑6‑phosphate isomerase/exopolysaccharide production protein YjbE
*	*	÷	NZ_CP009273	4240849	4240927	79	3 [1]	[1] 3	BW25113_RS20970	SopA family protein
*	*	÷	NZ_CP009273	4241018	4241032	15	3 [1]	[0] 2	BW25113_RS20970	SopA family protein
*	*	÷	NZ_CP009273	4241457	4241497	41	2 [0]	[0] 2	BW25113_RS20970	SopA family protein
*	*	÷	NZ_CP009273	4241564	4241611	48	2 [0]	[0] 4	BW25113_RS20970	SopA family protein
*	*	÷	NZ_CP009273	4241747	4241789	43	2 [1]	[1] 2	BW25113_RS20970	SopA family protein
*	*	÷	NZ_CP009273	4250074	4250113	40	3 [1]	[1] 2	zur/BW25113_RS21020	zinc uptake transcriptional repressor Zur/DUF2713 domain‑containing protein
*	*	÷	NZ_CP009273	4250346	4250404	59	3 [1]	[1] 2	BW25113_RS21020	DUF2713 domain‑containing protein
*	*	÷	NZ_CP009273	4258369	4258476	108	2 [1]	[1] 3	tyrB/BW25113_RS26020	aromatic amino acid transaminase/hypothetical protein
*	*	÷	NZ_CP009273	4258563	4258609	47	2 [0]	[1] 2	tyrB/BW25113_RS26020	aromatic amino acid transaminase/hypothetical protein
*	*	÷	NZ_CP009273	4258843	4258884	42	2 [1]	[1] 2	BW25113_RS26020	hypothetical protein
*	*	÷	NZ_CP009273	4272202	4272252	51	2 [0]	[0] 2	espX5	T3SS effector pentapeptide repeat protein EspX5
*	*	÷	NZ_CP009273	4272556	4272611	56	2 [1]	[0] 2	espX5	T3SS effector pentapeptide repeat protein EspX5
*	*	÷	NZ_CP009273	4272968	4273044	77	3 [1]	[0] 2	[espX5]	[espX5]
*	*	÷	NZ_CP009273	4284147	4284193	47	2 [0]	[1] 3	nrfG/gltP	heme lyase NrfEFG subunit NrfG/glutamate/aspartate:proton symporter GltP
*	*	÷	NZ_CP009273	4294366	4294440	75	3 [1]	[1] 2	[yjcS]	[yjcS]
*	*	÷	NZ_CP009273	4302873	4303010	138	2 [0]	[1] 5	alsR/rpiB	als operon DNA‑binding transcriptional repressor AlsR/bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB
*	*	÷	NZ_CP009273	4316774	4316890	117	2 [1]	[1] 2	yjdM/crfC	zinc ribbon domain‑containing protein YjdM/clamp‑binding protein CrfC
*	*	÷	NZ_CP009273	4327828	4327899	72	2 [1]	[1] 2	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase
*	*	÷	NZ_CP009273	4330452	4330457	6	3 [1]	[0] 2	adiA/melR	arginine decarboxylase/transcriptional regulator MelR
*	*	÷	NZ_CP009273	4364074	4364213	140	3 [1]	[1] 2	yjeJ/epmB	YjeJ family protein/EF‑P beta‑lysylation protein EpmB
*	*	÷	NZ_CP009273	4409595	4409636	42	3 [1]	[0] 2	ulaG/ulaA	L‑ascorbate 6‑phosphate lactonase/PTS ascorbate transporter subunit IIC
*	*	÷	NZ_CP009273	4417228	4417280	53	2 [1]	[1] 2	[yjfZ]	[yjfZ]
*	*	÷	NZ_CP009273	4427434	4427503	70	2 [1]	[1] 2	cysQ/BW25113_RS21900	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
*	*	÷	NZ_CP009273	4465807	4465904	98	2 [1]	[1] 4	BW25113_RS22080	hypothetical protein
*	*	÷	NZ_CP009273	4466781	4466980	200	2 [0]	[1] 4	BW25113_RS22080	hypothetical protein
*	*	÷	NZ_CP009273	4487783	4487841	59	2 [1]	[1] 2	BW25113_RS22170/BW25113_RS22180	tyrosine‑type recombinase/integrase/IS3‑like element IS2 family transposase
*	*	÷	NZ_CP009273	4494516	4494523	8	2 [0]	[1] 2	nanX	MFS transporter
*	*	÷	NZ_CP009273	4494795	4494831	37	4 [1]	[0] 2	nanX	MFS transporter
*	*	÷	NZ_CP009273	4508095	4508130	36	5 [1]	[1] 2	fecI/ykiE	RNA polymerase sigma factor FecI/protein YkiE
*	*	÷	NZ_CP009273	4529404	4529518	115	6 [1]	[1] 2	nanC/fimB	N‑acetylneuraminic acid outer membrane channel NanC/type 1 fimbria switch DNA invertase FimB
*	*	÷	NZ_CP009273	4531643	4531738	96	3 [1]	[1] 2	fimB/fimE	type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE
*	*	÷	NZ_CP009273	4532482	4532527	46	2 [0]	[0] 2	fimE/fimA	type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA
*	*	÷	NZ_CP009273	4546133	4546172	40	6 [0]	[1] 2	[yjiC]	[yjiC]
*	*	÷	NZ_CP009273	4546232	4546471	240	2 [1]	[0] 2	yjiC/idlP	YjfZ/YjiC family protein/iraD leader peptide IdlP
*	*	÷	NZ_CP009273	4561733	4561794	62	3 [1]	[0] 2	yjiS/yjiT	DUF1127 domain‑containing protein/protein YjiT
*	*	÷	NZ_CP009273	4562061	4562108	48	2 [1]	[0] 2	yjiS/yjiT	DUF1127 domain‑containing protein/protein YjiT
*	*	÷	NZ_CP009273	4581324	4581369	46	3 [1]	[1] 2	btsT/tsr	pyruvate/proton symporter BtsT/methyl‑accepting chemotaxis protein

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	360104 =	NA (NA)	45 (3.150)	26/166	0.0	60.0%	intergenic (‑35/+251)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
	?	NZ_CP009273	= 360286	30 (2.100)					intergenic (‑217/+69)	lacZ/BW25113_RS23320	beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein
*	?	NZ_CP009273	1203246 =	0 (0.000)	5 (0.430)	5/134	0.6	83.3%	coding (290/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	1205075 =	2 (0.170)					coding (40/540 nt)	BW25113_RS06005	phage tail protein
*	?	NZ_CP009273	= 1203261	0 (0.000)	14 (1.210)	10/134	0.2	93.3%	coding (305/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	= 1205058	2 (0.170)					coding (57/540 nt)	BW25113_RS06005	phage tail protein