breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 9,907 A→C 5.5% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 5.2% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 53,376 G→A 8.1% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,379 T→C 7.8% E13G (GAG→GGG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 83,587 A→C 11.0% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 10.9% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 95,070 G→A 5.6% V141I (GTA→ATA) ‡ murF → UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA 95,071 T→C 5.5% V141A (GTA→GCA) ‡ murF → UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA 100,158 C→T 5.3% P172L (CCG→CTG)  murG → N‑acetylglucosaminyl transferase
RA 100,161 A→G 6.2% Q173R (CAG→CGG)  murG → N‑acetylglucosaminyl transferase
RA 111,013 G→A 9.8% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 111,016 T→C 9.2% intergenic (+32/‑28) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 120,154 Δ1 bp 13.5% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 13.6% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 164,557 G→C 5.2% intergenic (+23/‑173) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,558 T→A 5.1% intergenic (+24/‑172) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 176,977 A→G 5.8% intergenic (+23/+24) erpA → / ← yadS iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein
RA 176,978 A→T 5.8% intergenic (+24/+23) erpA → / ← yadS iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein
RA 176,979 C→T 5.4% intergenic (+25/+22) erpA → / ← yadS iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein
RA 256,449 T→C 8.4% intergenic (+14/‑78) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,454 C→G 8.4% intergenic (+19/‑73) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,459 G→A 9.0% intergenic (+24/‑68) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 282,513 T→C 6.1% L79P (CTG→CCG)  yagE → 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA 285,882 T→G 5.3% I163S (ATC→AGC)  yagG → CP4‑6 prophage; putative sugar transporter
RA 285,887 C→A 5.3% L165M (CTG→ATG)  yagG → CP4‑6 prophage; putative sugar transporter
RA 361,901 T→G 5.1% intergenic (‑41/+25) lacA ← / ← lacY thiogalactoside acetyltransferase/lactose permease
RA 361,902 C→A 5.2% intergenic (‑42/+24) lacA ← / ← lacY thiogalactoside acetyltransferase/lactose permease
RA 361,968 G→C 5.4% G404G (GGC→GGG lacY ← lactose permease
RA 361,971 G→C 5.4% P403P (CCC→CCG lacY ← lactose permease
RA 361,974 G→C 5.4% G402G (GGC→GGG lacY ← lactose permease
RA 374,682 C→T 5.5% P272L (CCG→CTG) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,683 G→C 5.6% P272P (CCG→CCC) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,688 G→C 5.6% R274P (CGA→CCA) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,689 A→G 5.8% R274R (CGA→CGG) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 420,942 G→T 5.1% intergenic (+32/‑44) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 454,853 T→C 6.6% intergenic (+64/‑280) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 454,856 G→A 6.7% intergenic (+67/‑277) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 464,354 C→A 5.8% intergenic (+46/‑48) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,356 A→T 5.7% intergenic (+48/‑46) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,358 T→G 5.7% intergenic (+50/‑44) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 475,971 C→G 7.3% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 7.3% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 481,225 T→G 7.2% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 481,228 C→A 7.0% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 543,207 A→T 6.2% intergenic (+174/+54) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,210 A→T 6.3% intergenic (+177/+51) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 553,885 G→A 7.0% T19I (ACC→ATC)  lpxH ← UDP‑2,3‑diacylglucosamine pyrophosphohydrolase
RA 553,887 G→C 6.5% I18M (ATC→ATG) ‡ lpxH ← UDP‑2,3‑diacylglucosamine pyrophosphohydrolase
RA 553,889 T→C 6.4% I18V (ATC→GTC) ‡ lpxH ← UDP‑2,3‑diacylglucosamine pyrophosphohydrolase
RA 569,160 G→T 7.0% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 6.9% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 604,752 G→T 7.3% intergenic (‑89/+19) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 604,753 A→C 7.4% intergenic (‑90/+18) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 657,531 T→G 5.2% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 5.0% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 691,390 G→C 6.5% A132G (GCC→GGC)  ybeX ← putative ion transport
RA 700,388 A→T 5.3% L403M (TTG→ATG)  nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
RA 700,389 A→T 5.3% H402Q (CAT→CAA nagC ← N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
RA 710,170 C→T 7.9% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 6.8% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 713,195 G→A 5.2% R70H (CGC→CAC)  seqA → negative modulator of initiation of replication
RA 756,565 G→T 5.5% G220V (GGC→GTC)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 756,568 A→C 5.0% D221A (GAC→GCC)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 764,078 A→G 5.2% E355E (GAA→GAG sucC → succinyl‑CoA synthetase, beta subunit
RA 764,079 C→T 5.2% L356F (CTC→TTC)  sucC → succinyl‑CoA synthetase, beta subunit
RA 781,668 C→T 7.8% intergenic (+16/‑417) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,670 A→T 7.6% intergenic (+18/‑415) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,672 A→G 7.6% intergenic (+20/‑413) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 782,991 A→C 5.4% N303H (AAT→CAT)  nadA → quinolinate synthase, subunit A
RA 805,312 G→T 7.3% E604* (GAG→TAG) ‡ ybhJ → aconitase family protein
RA 805,313 A→C 7.7% E604A (GAG→GCG) ‡ ybhJ → aconitase family protein
RA 824,949 T→C 5.2% L107P (CTG→CCG)  ybhQ → inner membrane protein
RA 847,213 A→T 5.4% intergenic (‑94/+45) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,214 T→A 5.3% intergenic (‑95/+44) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,215 A→T 5.4% intergenic (‑96/+43) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 857,576 T→C 5.1% intergenic (+21/+220) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,578 C→G 5.2% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 5.2% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 860,151 A→G 5.3% intergenic (‑123/+23) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,154 A→T 5.7% intergenic (‑126/+20) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,157 C→T 5.6% intergenic (‑129/+17) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 892,455 G→C 5.9% V163V (GTG→GTC rimK → ribosomal protein S6 modification protein
RA 892,457 T→A 6.5% I164N (ATT→AAT)  rimK → ribosomal protein S6 modification protein
RA 892,459 G→C 6.5% D165H (GAC→CAC)  rimK → ribosomal protein S6 modification protein
RA 894,952 T→A 5.5% intergenic (+56/‑39) potF → / → potG putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase
RA 899,656 T→C 7.0% intergenic (+11/+188) rlmC → / ← artJ 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA 899,657 G→A 7.7% intergenic (+12/+187) rlmC → / ← artJ 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA 958,769 C→G 5.2% intergenic (+28/‑43) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,771 A→T 5.2% intergenic (+30/‑41) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,773 C→G 5.3% intergenic (+32/‑39) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 964,148 T→C 5.7% intergenic (+36/‑172) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,150 T→A 5.8% intergenic (+38/‑170) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,152 G→A 6.0% intergenic (+40/‑168) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 987,560 G→C 8.8% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 8.9% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,004,741 T→G 7.0% intergenic (+84/‑27) ycbF → / → pyrD putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked
RA 1,004,746 C→A 8.3% intergenic (+89/‑22) ycbF → / → pyrD putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked
RA 1,018,986 A→T 5.2% intergenic (+49/+27) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,075,515 G→T 5.6% A1123E (GCG→GAG)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,075,518 A→C 5.3% L1122R (CTC→CGC)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,100,543 T→A 5.3% V83D (GTC→GAC)  ycdZ → DUF1097 family inner membrane protein
RA 1,100,789 G→T 7.4% intergenic (+2/+62) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,791 G→C 7.4% intergenic (+4/+60) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,793 A→C 7.4% intergenic (+6/+58) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,113,544 G→A 6.9% intergenic (+138/‑35) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,546 T→A 7.7% intergenic (+140/‑33) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,548 T→C 7.8% intergenic (+142/‑31) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,147,980 G→T 5.9% K120N (AAG→AAT plsX → putative phosphate acyltransferase
RA 1,151,873 T→A 6.0% intergenic (+22/‑66) acpP → / → fabF acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II
RA 1,151,874 T→A 6.1% intergenic (+23/‑65) acpP → / → fabF acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II
RA 1,153,208 T→C 7.6% intergenic (+28/‑92) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,213 T→A 7.8% intergenic (+33/‑87) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,214 T→A 7.8% intergenic (+34/‑86) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,219 G→A 7.8% intergenic (+39/‑81) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,159,335 G→T 5.0% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 5.2% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,169,380 T→C 8.2% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 8.4% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 8.5% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,177,646 T→G 7.5% N109K (AAT→AAG lolE → lipoprotein‑releasing system transmembrane protein
RA 1,177,647 C→A 7.7% L110I (CTT→ATT)  lolE → lipoprotein‑releasing system transmembrane protein
RA 1,205,787 A→T 5.3% pseudogene (57/412 nt) beeE → pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA 1,205,788 G→C 5.3% pseudogene (58/412 nt) beeE → pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA 1,205,789 A→T 5.0% pseudogene (59/412 nt) beeE → pseudogene, portal protein family, e14 prophage;Phage or Prophage Related
RA 1,227,051 G→C 5.9% intergenic (+83/+20) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,227,052 A→T 5.8% intergenic (+84/+19) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,227,053 G→C 5.9% intergenic (+85/+18) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,260,901 C→T 10.5% intergenic (‑98/+27) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,260,904 A→G 9.0% intergenic (‑101/+24) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,311,830 A→G 9.1% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 8.3% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,324,837 A→C 6.4% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 5.8% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 6.0% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,335,681 T→C 6.8% intergenic (+223/‑150) yciX → / → acnA uncharacterized protein/aconitate hydratase 1; aconitase A
RA 1,335,684 G→A 7.3% intergenic (+226/‑147) yciX → / → acnA uncharacterized protein/aconitate hydratase 1; aconitase A
RA 1,354,220 C→A 6.0% G100V (GGT→GTT)  sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,223 A→G 6.0% V99A (GTG→GCG) ‡ sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,224 C→T 6.0% V99M (GTG→ATG) ‡ sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,227 T→G 5.2% T98P (ACC→CCC)  sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,370,026 T→A 6.2% intergenic (+23/‑190) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,370,029 T→A 6.5% intergenic (+26/‑187) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,388,283 C→T 9.3% intergenic (+22/+22) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,284 A→T 10.2% intergenic (+23/+21) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,285 A→G 10.4% intergenic (+24/+20) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,406,093 A→G 6.6% I39V (ATC→GTC)  smrA → DNA endonuclease
RA 1,406,098 C→T 6.8% D40D (GAC→GAT smrA → DNA endonuclease
RA 1,413,964 C→T 5.5% intergenic (‑37/+20) ralR ← / ← recT Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein
RA 1,426,178 A→T 5.7% intergenic (+96/‑276) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,429,019 G→T 6.4% intergenic (+35/‑30) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,021 T→A 6.3% intergenic (+37/‑28) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,022 T→A 6.4% intergenic (+38/‑27) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,429,024 A→C 6.4% intergenic (+40/‑25) lomR → / → stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
RA 1,441,833 G→C 5.5% intergenic (‑90/+21) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,835 A→T 5.4% intergenic (‑92/+19) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,441,837 G→C 5.5% intergenic (‑94/+17) hslJ ← / ← ldhA heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent
RA 1,462,028 G→A 8.1% G379D (GGT→GAT) ‡ paaJ → 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
RA 1,462,029 T→C 8.1% G379G (GGT→GGC) ‡ paaJ → 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
RA 1,498,892 A→T 11.1% intergenic (+17/‑46) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,894 C→G 11.2% intergenic (+19/‑44) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,896 A→T 11.2% intergenic (+21/‑42) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,534,897 A→T 5.6% intergenic (+28/+68) nhoA → / ← yddE N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein
RA 1,534,898 A→T 5.6% intergenic (+29/+67) nhoA → / ← yddE N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein
RA 1,534,904 T→G 5.1% intergenic (+35/+61) nhoA → / ← yddE N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein
RA 1,534,905 T→C 5.5% intergenic (+36/+60) nhoA → / ← yddE N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein
RA 1,541,077 G→C 5.5% A505G (GCC→GGC)  narZ ← nitrate reductase 2 (NRZ), alpha subunit
RA 1,603,724 A→C 8.4% T236P (ACC→CCC)  lsrC → autoinducer 2 import system permease protein
RA 1,603,735 G→T 6.5% G239G (GGG→GGT lsrC → autoinducer 2 import system permease protein
RA 1,642,370 C→G 5.0% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 5.0% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,650,147 G→A 5.3% pseudogene (70/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,650,148 T→C 5.1% pseudogene (71/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,660,194 A→C 5.7% K709T (AAG→ACG)  ynfE → putative selenate reductase, periplasmic
RA 1,660,198 T→A 5.5% A710A (GCT→GCA ynfE → putative selenate reductase, periplasmic
RA 1,660,200 C→G 6.2% A711G (GCC→GGC)  ynfE → putative selenate reductase, periplasmic
RA 1,660,202 T→A 6.2% C712S (TGC→AGC)  ynfE → putative selenate reductase, periplasmic
RA 1,660,206 G→T 6.1% R713L (CGT→CTT)  ynfE → putative selenate reductase, periplasmic
RA 1,666,466 T→G 5.3% Y384* (TAT→TAG clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,468 A→T 5.2% Q385L (CAG→CTG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,685,527 A→G 100% G354G (GGT→GGC fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,689,817 C→A 5.4% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,819 A→T 5.1% intergenic (+68/‑33) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,712,337 A→T 5.7% intergenic (+179/‑432) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,712,338 A→T 5.7% intergenic (+180/‑431) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,757,688 T→A 6.4% intergenic (+31/+33) lpp → / ← ldtE murein lipoprotein/murein L,D‑transpeptidase
RA 1,795,227 A→T 5.5% intergenic (‑75/+26) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,228 G→C 5.5% intergenic (‑76/+25) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,229 A→T 6.1% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,829,328 C→G 5.0% G136A (GGC→GCC)  astD ← succinylglutamic semialdehyde dehydrogenase
RA 1,829,334 G→T 5.2% P134Q (CCG→CAG)  astD ← succinylglutamic semialdehyde dehydrogenase
RA 1,863,800 T→C 7.2% intergenic (+34/‑50) gapA → / → yeaD glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
RA 1,863,801 T→G 6.9% intergenic (+35/‑49) gapA → / → yeaD glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
RA 1,863,802 C→A 6.8% intergenic (+36/‑48) gapA → / → yeaD glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
RA 1,863,803 G→A 6.8% intergenic (+37/‑47) gapA → / → yeaD glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
RA 1,880,851 T→A 7.7% intergenic (‑92/+35) leuE ← / ← dmlR leucine efflux protein/transcriptional activator of dmlA
RA 1,880,852 T→A 7.7% intergenic (‑93/+34) leuE ← / ← dmlR leucine efflux protein/transcriptional activator of dmlA
RA 1,883,027 C→G 5.7% intergenic (+30/‑161) dmlA → / → yeaV D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter
RA 1,910,295 A→T 5.0% D7V (GAC→GTC)  yebQ → putative transporter
RA 1,950,292 C→G 5.2% A77A (GCG→GCC aspS ← aspartyl‑tRNA synthetase
RA 1,950,295:1 +C 5.1% coding (228/1773 nt) aspS ← aspartyl‑tRNA synthetase
RA 1,950,306 C→G 5.1% G73R (GGC→CGC)  aspS ← aspartyl‑tRNA synthetase
RA 1,977,223:1 +A 6.7% intergenic (‑84/+43) motA ← / ← flhC proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
RA 1,977,227 T→A 7.1% intergenic (‑88/+39) motA ← / ← flhC proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
RA 1,977,230 Δ1 bp 7.3% intergenic (‑91/+36) motA ← / ← flhC proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,985,112 C→G 7.7% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,987,858 G→C 6.8% intergenic (‑100/+15) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,992,083 G→C 6.0% noncoding (35/76 nt) glyW ← tRNA‑Gly
RA 1,999,231 T→A 7.2% T84S (ACT→TCT)  dcyD ← D‑cysteine desulfhydrase, PLP‑dependent
RA 2,032,336 G→C 10.5% intergenic (‑19/+48) dcm ← / ← yedJ DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase
RA 2,041,159 G→A 5.8% intergenic (+41/‑216) yedZ → / → zinT inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
RA 2,041,160 T→G 5.8% intergenic (+42/‑215) yedZ → / → zinT inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
RA 2,041,166 G→T 5.7% intergenic (+48/‑209) yedZ → / → zinT inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
RA 2,041,167 A→C 5.7% intergenic (+49/‑208) yedZ → / → zinT inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic
RA 2,057,595 T→C 5.6% intergenic (+21/+432) yeeN → / ← asnW UPF0082 family protein/tRNA‑Asn
RA 2,057,597 T→G 5.8% intergenic (+23/+430) yeeN → / ← asnW UPF0082 family protein/tRNA‑Asn
RA 2,057,599 T→A 5.7% intergenic (+25/+428) yeeN → / ← asnW UPF0082 family protein/tRNA‑Asn
RA 2,057,601 C→A 5.7% intergenic (+27/+426) yeeN → / ← asnW UPF0082 family protein/tRNA‑Asn
RA 2,057,603 G→A 5.4% intergenic (+29/+424) yeeN → / ← asnW UPF0082 family protein/tRNA‑Asn
RA 2,079,004 G→C 6.1% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,090,122 A→G 6.7% intergenic (+76/‑70) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,124 C→G 6.8% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,126 C→T 6.7% intergenic (+80/‑66) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,172,350 A→T 6.3% L175Q (CTG→CAG)  gatD ← galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA 2,172,353 A→T 6.2% L174Q (CTG→CAG)  gatD ← galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,428 C→A 5.2% intergenic (‑224/+84) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,229,322 C→G 7.6% intergenic (+257/+116) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,229,323 C→G 7.6% intergenic (+258/+115) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,255,991 A→T 7.1% K213* (AAA→TAA) ‡ yeiL → putative transcriptional regulator
RA 2,255,992 A→T 7.1% K213I (AAA→ATA) ‡ yeiL → putative transcriptional regulator
RA 2,279,711 A→T 5.5% L17Q (CTG→CAG)  bcr ← bicyclomycin/cysteine/sulfonamide efflux transporter
RA 2,305,085 A→G 10.3% intergenic (+692/+23) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,086 C→G 10.5% intergenic (+693/+22) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,087 C→T 10.4% intergenic (+694/+21) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,318,095 C→G 100% L594F (TTG→TTC rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,319,581 A→G 5.9% V99A (GTG→GCG) ‡ rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,319,582 C→G 5.8% V99L (GTG→CTG) ‡ rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,319,585 C→G 5.8% D98H (GAT→CAT)  rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,319,586 C→T 5.8% A97A (GCG→GCA rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,325,037:1 +T 7.3% coding (282/1323 nt) atoE → short chain fatty acid transporter
RA 2,325,042 Δ1 bp 5.0% coding (287/1323 nt) atoE → short chain fatty acid transporter
RA 2,375,483 A→T 6.7% L160L (CTT→CTA) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,375,484 A→T 6.7% L160H (CTT→CAT) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,383,956 A→T 7.0% intergenic (+32/+39) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,383,959 A→T 7.0% intergenic (+35/+36) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,391,414 C→G 5.2% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,414,689 C→G 6.8% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,430,144 G→C 6.2% A32G (GCC→GGC)  purF ← amidophosphoribosyltransferase
RA 2,474,878 T→C 10.3% intergenic (+22/‑106) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,474,881 G→A 10.6% intergenic (+25/‑103) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,482,839 C→G 5.4% L167F (TTG→TTC emrK ← multidrug resistance efflux pump membrane fusion protein
RA 2,493,563 T→A 5.1% intergenic (‑309/+204) frc ← / ← yfdX formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein
RA 2,518,197 C→G 6.7% noncoding (35/76 nt) alaW ← tRNA‑Ala
RA 2,521,344 C→T 6.2% intergenic (+16/+249) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,346 A→T 5.9% intergenic (+18/+247) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,348 A→G 6.0% intergenic (+20/+245) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,535,981 G→A 100% G50S (GGT→AGT)  crr → glucose‑specific enzyme IIA component of PTS
RA 2,596,873 Δ1 bp 9.1% intergenic (‑136/+32) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,596,878:1 +G 8.2% intergenic (‑141/+27) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,612,973 C→G 5.9% L358L (CTC→CTG hyfR → hydrogenase‑4 transcriptional activator
RA 2,612,974 C→G 5.3% Q359E (CAG→GAG)  hyfR → hydrogenase‑4 transcriptional activator
RA 2,622,348:1 +A 6.3% coding (115/639 nt) purN → phosphoribosylglycinamide formyltransferase 1
RA 2,622,354 Δ1 bp 6.3% coding (121/639 nt) purN → phosphoribosylglycinamide formyltransferase 1
RA 2,630,918 A→T 5.4% intergenic (+53/+40) yfgI → / ← guaA nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA 2,630,919 G→A 5.4% intergenic (+54/+39) yfgI → / ← guaA nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA 2,630,920 T→C 5.5% intergenic (+55/+38) yfgI → / ← guaA nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA 2,630,921 A→T 6.1% intergenic (+56/+37) yfgI → / ← guaA nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase)
RA 2,637,433 C→T 8.5% intergenic (‑77/+41) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,438 T→G 9.2% intergenic (‑82/+36) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,439 C→A 8.8% intergenic (‑83/+35) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,444 A→G 8.5% intergenic (‑88/+30) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,640,668 G→T 5.6% intergenic (‑93/+18) hisS ← / ← ispG histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase
RA 2,653,367 G→A 9.9% intergenic (+28/‑488) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,653,372 T→C 8.3% intergenic (+33/‑483) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,654,142 T→A 10.0% noncoding (288/304 nt) ryfA → novel sRNA, function unknown
RA 2,654,143 T→A 9.5% noncoding (289/304 nt) ryfA → novel sRNA, function unknown
RA 2,654,144 T→A 9.4% noncoding (290/304 nt) ryfA → novel sRNA, function unknown
RA 2,691,169 A→T 5.8% noncoding (172/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,171 T→A 5.8% noncoding (170/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,173 A→T 5.9% noncoding (168/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,704,304 A→G 6.9% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 7.3% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 7.2% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,707,320 A→T 6.0% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 6.6% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,716,030 T→G 5.5% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 5.5% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,753,986 A→T 9.7% intergenic (+40/+22) bamE → / ← ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
RA 2,761,620 T→G 5.9% K641Q (AAG→CAG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,761,623 C→A 5.9% V640L (GTA→TTA)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,768,609 T→C 8.8% intergenic (+36/‑56) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,614 A→C 8.3% intergenic (+41/‑51) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,615 G→T 9.0% intergenic (+42/‑50) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,620 G→A 8.5% intergenic (+47/‑45) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,777,571 A→G 7.6% D40G (GAC→GGC)  ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,573 A→G 7.6% T41A (ACG→GCG) ‡ ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,574 C→T 7.6% T41M (ACG→ATG) ‡ ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,777,576 C→T 8.1% P42S (CCG→TCG)  ypjF → CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
RA 2,778,123 G→T 7.2% intergenic (+341/+23) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,778,124 A→C 7.2% intergenic (+342/+22) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,800,515 C→A 7.1% intergenic (+40/‑208) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,517 T→A 7.3% intergenic (+42/‑206) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,519 T→G 6.5% intergenic (+44/‑204) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,801,056 A→T 9.0% N31I (AAT→ATT)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,818,392 A→T 6.9% intergenic (‑118/+81) argY ← / ← argV tRNA‑Arg/tRNA‑Arg
RA 2,818,393 A→T 6.1% intergenic (‑119/+80) argY ← / ← argV tRNA‑Arg/tRNA‑Arg
RA 2,838,222 A→T 7.7% intergenic (‑117/+32) hydN ← / ← ascG formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor
RA 2,866,487 G→C 5.1% intergenic (+22/+72) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,866,488 G→C 5.1% intergenic (+23/+71) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,873,915 A→G 7.7% H26H (CAT→CAC) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,917 G→C 7.8% H26D (CAT→GAT) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,919 C→T 7.8% G25D (GGT→GAT)  cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,906,607 C→T 5.6% intergenic (+24/+36) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,608 G→C 5.7% intergenic (+25/+35) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,609 G→C 5.6% intergenic (+26/+34) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,918,020 A→C 5.7% intergenic (+207/+25) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,976,754 T→G 5.2% R52R (CGT→CGG galR → galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 2,976,758 C→T 5.3% L54L (CTG→TTG)  galR → galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor
RA 3,020,510 G→T 6.5% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 6.3% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 6.6% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,056,123 A→C 6.1% noncoding (141/183 nt) ssrS → 6S RNA inhibits RNA polymerase promoter binding
RA 3,061,817 G→C 9.6% W323S (TGG→TCG) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,061,818 G→C 11.4% W323C (TGG→TGC) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,081,338 G→C 5.2% H100D (CAC→GAC)  tktA ← transketolase 1, thiamine triphosphate‑binding
RA 3,131,524 A→G 5.1% S295S (AGT→AGC yghQ ← putative inner membrane polysaccharide flippase
RA 3,156,590 C→A 10.7% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 11.4% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,169,260 Δ1 bp 5.6% intergenic (‑29/+24) ygiV ← / ← ygiW transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
RA 3,169,265:1 +T 6.4% intergenic (‑34/+19) ygiV ← / ← ygiW transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein
RA 3,171,852 C→T 8.3% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 8.8% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 8.8% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 8.7% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,180,505 G→T 5.3% E29* (GAG→TAG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,180,506 A→C 5.4% E29A (GAG→GCG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,276,886 C→A 7.9% intergenic (+33/‑116) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,887 T→C 6.7% intergenic (+34/‑115) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,890 G→A 6.5% intergenic (+37/‑112) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,276,891 T→G 6.7% intergenic (+38/‑111) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,291,109 A→T 6.7% K766* (AAA→TAA) ‡ yraJ → putative outer membrane protein
RA 3,291,110 A→T 6.7% K766I (AAA→ATA) ‡ yraJ → putative outer membrane protein
RA 3,309,009 C→T 6.9% intergenic (‑85/+24) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,012 A→G 10.7% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,318,079 A→T 6.4% intergenic (‑73/+134) rimP ← / ← metY ribosome maturation factor for 30S subunits/tRNA‑Met
RA 3,318,080 A→T 6.5% intergenic (‑74/+133) rimP ← / ← metY ribosome maturation factor for 30S subunits/tRNA‑Met
RA 3,328,182 A→T 6.3% intergenic (+99/+57) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,183 T→A 6.2% intergenic (+100/+56) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,184 A→T 6.1% intergenic (+101/+55) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,350,678 Δ1 bp 6.1% noncoding (102/121 nt) arcZ → sRNA positive antisense regulator of rpoS; binds Hfq
RA 3,350,682:1 +A 6.3% noncoding (106/121 nt) arcZ → sRNA positive antisense regulator of rpoS; binds Hfq
RA 3,418,628 G→A 6.0% intergenic (+17/‑414) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,418,629 T→C 6.0% intergenic (+18/‑413) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,439,588 G→C 8.7% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 8.6% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,471,366 A→G 5.8% intergenic (‑37/+34) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,476,585 G→A 6.0% intergenic (‑145/+22) yheO ← / ← fkpA putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 3,477,878 T→A 11.5% intergenic (+20/+29) slyX → / ← slyD phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,577,657 A→G 6.2% intergenic (‑65/+74) gntK ← / ← gntR gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA 3,577,660 C→T 5.7% intergenic (‑68/+71) gntK ← / ← gntR gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA 3,601,824 G→C 5.7% P88R (CCC→CGC) ‡ ftsX ← putative ABC transporter permease
RA 3,601,825 G→C 5.7% P88A (CCC→GCC) ‡ ftsX ← putative ABC transporter permease
RA 3,608,695 C→G 8.0% intergenic (+46/+56) zntA → / ← tusA zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase
RA 3,657,599 T→A 7.7% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 7.8% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,603 T→A 8.3% intergenic (+36/+383) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,714,163:1 +T 8.4% coding (2232/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,714,168 Δ1 bp 8.4% coding (2227/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,720,305 G→A 5.4% intergenic (+44/+143) cspA → / ← hokA RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small
RA 3,774,207 C→T 5.3% intergenic (+13/‑217) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,214 C→T 6.0% intergenic (+20/‑210) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,215 A→G 6.0% intergenic (+21/‑209) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,222 A→G 5.8% intergenic (+28/‑202) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,781,051 C→G 6.4% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 8.7% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 8.2% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,814,164 G→A 5.0% G78D (GGT→GAT)  dut → deoxyuridinetriphosphatase
RA 3,885,293 A→C 5.5% N73T (AAC→ACC)  yidC → membrane protein insertase
RA 3,885,298 C→A 5.2% R75S (CGT→AGT) ‡ yidC → membrane protein insertase
RA 3,885,299 G→C 5.3% R75P (CGT→CCT) ‡ yidC → membrane protein insertase
RA 3,885,300 T→G 5.8% R75R (CGT→CGG) ‡ yidC → membrane protein insertase
RA 3,885,305 G→T 5.5% G77V (GGT→GTT)  yidC → membrane protein insertase
RA 3,891,502 C→G 6.0% intergenic (+19/‑113) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,504 T→A 5.6% intergenic (+21/‑111) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,506 C→G 5.6% intergenic (+23/‑109) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,897,613 G→A 6.6% P36P (CCG→CCA cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,897,614 C→G 6.5% L37V (CTG→GTG) ‡ cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,897,615 T→C 6.5% L37P (CTG→CCG) ‡ cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,923,376 A→G 5.1% V102A (GTG→GCG) ‡ rsmG ← 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein
RA 3,923,377 C→T 5.3% V102M (GTG→ATG) ‡ rsmG ← 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein
RA 3,947,332 A→T 6.6% A212A (GCT→GCA hdfR ← flhDC operon transcriptional repressor
RA 3,947,335 A→T 6.6% S211S (TCT→TCA hdfR ← flhDC operon transcriptional repressor
RA 3,953,432 C→T 5.2% intergenic (+19/‑46) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,433 A→G 5.2% intergenic (+20/‑45) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,436 C→T 5.2% intergenic (+23/‑42) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,953,437 A→G 5.2% intergenic (+24/‑41) ilvE → / → ilvD branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase
RA 3,959,515 T→A 5.8% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,971,996 T→A 5.9% L246Q (CTG→CAG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
RA 3,981,102 T→A 6.1% V72V (GTT→GTA yifK → putative APC family amino acid transporter
RA 3,991,334 T→A 5.0% I61N (ATT→AAT) ‡ cyaA → adenylate cyclase
RA 3,991,335 T→A 5.0% I61I (ATT→ATA) ‡ cyaA → adenylate cyclase
RA 4,049,986 G→T 10.0% noncoding (88/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,049,989 A→C 9.7% noncoding (91/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,060,261 G→T 9.9% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 9.7% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,062,371 A→T 6.1% N42I (AAT→ATT)  yihN → MFS transporter family protein
RA 4,070,410 C→A 6.6% intergenic (‑9/+105) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,070,413 T→G 8.4% intergenic (‑12/+102) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,117,034 T→G 8.9% E63D (GAA→GAC glpK ← glycerol kinase
RA 4,127,251 C→T 6.1% intergenic (+26/+35) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,127,252 A→G 6.6% intergenic (+27/+34) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,142,512 C→A 5.3% intergenic (‑291/‑18) frwA ← / → frwC putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS
RA 4,168,349 A→G 5.9% intergenic (+149/‑23) rrsB → / → gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA 4,171,569:1 +T 15.0% intergenic (+25/‑68) rrlB → / → rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
RA 4,171,780 G→T 5.2% intergenic (+24/‑277) rrfB → / → murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA 4,171,781 A→T 5.0% intergenic (+25/‑276) rrfB → / → murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA 4,171,782 A→T 5.2% intergenic (+26/‑275) rrfB → / → murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA 4,171,783 A→C 5.2% intergenic (+27/‑274) rrfB → / → murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA 4,171,789 G→A 5.1% intergenic (+33/‑268) rrfB → / → murB 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
RA 4,177,171 T→A 6.6% intergenic (+43/‑187) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,177,172 T→A 6.7% intergenic (+44/‑186) tufB → / → secE translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit
RA 4,262,250 G→C 6.8% G194G (GGG→GGC dusA → tRNA‑dihydrouridine synthase A
RA 4,262,255 G→C 6.5% S196T (AGC→ACC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,286,116 C→G 6.3% G419A (GGC→GCC)  acs ← acetyl‑CoA synthetase
RA 4,296,060 C→T 21.0% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,306,540 T→C 6.6% S20G (AGC→GGC)  yjcS ← metallo‑beta‑lactamase superfamily protein
RA 4,306,541 G→A 6.7% A19A (GCC→GCT yjcS ← metallo‑beta‑lactamase superfamily protein
RA 4,339,802 A→G 5.8% A240A (GCT→GCC adiA ← arginine decarboxylase
RA 4,339,805 C→T 5.7% Q239Q (CAG→CAA adiA ← arginine decarboxylase
RA 4,353,172 C→G 5.5% intergenic (+91/+28) ghoT → / ← lysU toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA 4,356,445 A→T 7.1% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 7.1% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 7.9% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 8.1% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,366,854 T→G 8.7% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 8.7% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,376,633 C→T 5.2% G27G (GGC→GGT ecnB → entericidin B membrane lipoprotein
RA 4,386,126 C→T 5.9% R1082H (CGT→CAT)  mscM ← mechanosensitive channel protein, miniconductance
RA 4,386,129 A→G 5.7% M1081T (ATG→ACG)  mscM ← mechanosensitive channel protein, miniconductance
RA 4,392,394 C→G 6.4% noncoding (35/76 nt) glyV → tRNA‑Gly
RA 4,392,617 C→G 7.6% noncoding (35/76 nt) glyY → tRNA‑Gly
RA 4,409,410:1 +A 5.0% coding (136/732 nt) rlmB → 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent
RA 4,422,895 C→G 6.5% A17G (GCC→GGC)  ulaE → L‑xylulose 5‑phosphate 3‑epimerase
RA 4,422,903 T→C 5.5% C20R (TGC→CGC)  ulaE → L‑xylulose 5‑phosphate 3‑epimerase
RA 4,426,592 T→A 7.9% intergenic (+35/+36) rplI → / ← yjfZ 50S ribosomal subunit protein L9/uncharacterized protein
RA 4,472,434 G→A 8.1% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 8.2% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,012 A→T 8.6% intergenic (+123/+22) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,016 G→C 7.8% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 7.8% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,488,424 G→T 6.8% intergenic (+24/+137) lptG → / ← yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
RA 4,488,425 A→T 7.0% intergenic (+25/+136) lptG → / ← yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
RA 4,488,426 A→T 6.9% intergenic (+26/+135) lptG → / ← yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
RA 4,488,427 A→C 6.9% intergenic (+27/+134) lptG → / ← yjgR lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold
RA 4,604,753 T→A 5.1% S198R (AGT→AGA bglJ → bgl operon transcriptional activator
RA 4,612,330 G→C 5.7% intergenic (+41/‑81) ytjA → / → yjjU uncharacterized protein/putative patatin‑like family phospholipase
RA 4,612,331 C→T 5.6% intergenic (+42/‑80) ytjA → / → yjjU uncharacterized protein/putative patatin‑like family phospholipase
RA 4,614,615 G→A 8.7% intergenic (+355/+65) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,616 C→A 8.8% intergenic (+356/+64) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,622 T→G 9.0% intergenic (+362/+58) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,624 G→C 8.8% intergenic (+364/+56) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,626 C→A 8.7% intergenic (+366/+54) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,632 T→G 8.6% intergenic (+372/+48) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,614,633 T→C 9.8% intergenic (+373/+47) yjjV → / ← yjjW putative DNase/putative pyruvate formate lyase activating enzyme
RA 4,636,212 T→A 5.3% L69* (TTA→TAA)  creB → response regulator in two‑component regulatory system with CreC

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423760–3424234 3424543–3424238 5–784 53 [49] [48] 52 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 213083 =81 (0.690)7 (0.060) 7/254 NT 7.9% coding (753/1299 nt) tilS tRNA(Ile)‑lysidine synthetase
?NC_000913 213120 = 84 (0.740)coding (790/1299 nt) tilS tRNA(Ile)‑lysidine synthetase
* ? NC_000913 274620 =NA (NA)4 (0.040) 4/244 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 = 28673297 (0.830)5 (0.050) 5/248 NT 5.2% coding (1338/1383 nt) yagG CP4‑6 prophage; putative sugar transporter
?NC_000913 = 286752 91 (0.820)coding (1358/1383 nt) yagG CP4‑6 prophage; putative sugar transporter
* ? NC_000913 377435 =98 (0.840)5 (0.050) 4/248 NT 5.2% noncoding (101/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 377468 = 90 (0.810)noncoding (134/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
* ? NC_000913 411213 =97 (0.880)10 (0.090) 8/248 NT 9.3% noncoding (136/191 nt) REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 4295835 = NA (NA)noncoding (1/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 884909 =107 (0.910)5 (0.050) 4/244 NT 5.1% intergenic (+4/+37) mdfA/ybjH multidrug efflux system protein/uncharacterized protein
?NC_000913 884940 = 86 (0.790)intergenic (+35/+6) mdfA/ybjH multidrug efflux system protein/uncharacterized protein
* ? NC_000913 1207790 =58 (0.500)74 (0.720) 53/230 NT 55.9% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 66 (0.640)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780557 (0.490)58 (0.560) 46/230 NT 50.0% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 66 (0.640)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1269811 =90 (0.770)7 (0.060) 4/246 NT 7.6% intergenic (‑1/‑47) ldrB/rdlB toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB
?NC_000913 1269849 = 85 (0.770)intergenic (‑39/‑9) ldrB/rdlB toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB
* ? NC_000913 = 12994980 (0.000)144 (1.270) 102/254 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 1934529121 (1.030)7 (0.060) 5/258 NT 5.5% coding (76/1812 nt) edd 6‑phosphogluconate dehydratase
?NC_000913 = 1934556 120 (1.040)coding (49/1812 nt) edd 6‑phosphogluconate dehydratase
* ? NC_000913 = 207649976 (0.650)5 (0.050) 4/242 NT 6.5% coding (192/447 nt) yeeS CP4‑44 prophage; putative DNA repair protein
?NC_000913 = 2076505 74 (0.690)coding (198/447 nt) yeeS CP4‑44 prophage; putative DNA repair protein
* ? NC_000913 2254199 =147 (1.260)8 (0.070) 7/254 NT 5.7% intergenic (‑54/+46) nupX/rihB nucleoside permease/ribonucleoside hydrolase 2
?NC_000913 2254233 = 122 (1.080)intergenic (‑88/+12) nupX/rihB nucleoside permease/ribonucleoside hydrolase 2
* ? NC_000913 2477002 =127 (1.090)10 (0.090) 5/238 NT 8.8% coding (628/936 nt) dsdC dsd operon activator; autorepressor
?NC_000913 2477035 = 93 (0.880)coding (595/936 nt) dsdC dsd operon activator; autorepressor
* ? NC_000913 2727891 =NA (NA)27 (0.240) 12/250 NT NA noncoding (1294/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2727910 = NA (NA)noncoding (1275/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 = 3148956114 (0.970)6 (0.050) 5/246 NT 5.1% intergenic (+19/+21) gpr/yqhA L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
?NC_000913 = 3148961 114 (1.040)intergenic (+24/+16) gpr/yqhA L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein
* ? NC_000913 3468351 =109 (0.930)10 (0.090) 9/248 NT 9.1% coding (1503/2694 nt) chiA periplasmic endochitinase
?NC_000913 3468373 = 96 (0.870)coding (1481/2694 nt) chiA periplasmic endochitinase
* ? NC_000913 = 3542317113 (0.970)6 (0.050) 5/250 NT 5.2% coding (1911/2322 nt) feoB ferrous iron transporter protein B and GTP‑binding protein; membrane protein
?NC_000913 = 3542340 112 (1.000)coding (1934/2322 nt) feoB ferrous iron transporter protein B and GTP‑binding protein; membrane protein
* ? NC_000913 3620351 =NA (NA)3 (0.030) 3/256 NT 100% coding (1160/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3620387 = 0 (0.000)coding (1196/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 3620562NA (NA)9 (0.080) 5/250 NT 100% coding (1371/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620587 0 (0.000)coding (1396/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3721045 =154 (1.320)362 (3.120) 160/260 NT 72.8% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 117 (1.010)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 = 417160751 (0.440)45 (0.400) 10/250 NT 48.0% intergenic (+63/‑30) rrlB/rrfB 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon
?NC_000913 = 4213022 NA (NA)intergenic (+76/‑18) rrlE/rrfE 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon
* ? NC_000913 4295870 =NA (NA)6 (0.050) 3/260 NT 6.2% noncoding (36/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 4295946 = 91 (0.780)noncoding (112/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 = 4542690113 (0.970)8 (0.070) 8/244 NT 7.1% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 104 (0.950)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4628743 =NA (NA)6 (0.050) 4/248 NT 5.8% noncoding (49/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 4628776 = 98 (0.890)noncoding (82/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site