mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 5.5% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 5.4% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 53,376 | G→A | 5.4% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 5.3% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 78,878 | A→G | 6.5% | Y192Y (TAT→TAC) | leuD ← | 3‑isopropylmalate dehydratase small subunit |
| RA | 111,013 | G→A | 11.1% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 11.1% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 14.5% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 15.6% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 136,530 | C→T | 6.0% | intergenic (‑66/+40) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 156,157 | G→A | 5.4% | T15T (ACC→ACT) | yadV ← | putative periplasmic pilin chaperone |
| RA | 161,934 | G→A | 5.3% | A33V (GCG→GTG) | ligT ← | 2'‑5' RNA ligase |
| RA | 161,938 | C→G | 5.2% | E32Q (GAG→CAG) | ligT ← | 2'‑5' RNA ligase |
| RA | 161,942 | T→C | 5.9% | P30P (CCA→CCG) | ligT ← | 2'‑5' RNA ligase |
| RA | 173,566 | A→G | 5.8% | intergenic (+122/+36) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,567 | A→C | 5.8% | intergenic (+123/+35) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,573 | T→G | 5.5% | intergenic (+129/+29) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,574 | C→A | 5.8% | intergenic (+130/+28) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 247,381 | A→C | 6.7% | I224L (ATA→CTA) | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 247,385 | G→T | 6.6% | S225I (AGC→ATC) | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 247,387 | C→G | 6.8% | R226G (CGA→GGA) ‡ | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 247,389 | A→C | 6.7% | R226R (CGA→CGC) ‡ | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 247,393 | G→T | 6.9% | A228S (GCC→TCC) | yafL → | putative lipoprotein and C40 family peptidase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 270,206 | T→C | 6.0% | intergenic (‑24/‑72) | perR ← / → insN | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 292,302 | C→G | 7.4% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 378,000 | G→A | 5.8% | N123N (AAC→AAT) | frmB ← | S‑formylglutathione hydrolase |
| RA | 435,396 | T→A | 5.8% | I87N (ATT→AAT) | nusB → | transcription antitermination protein |
| RA | 435,402 | T→A | 5.7% | L89Q (CTG→CAG) | nusB → | transcription antitermination protein |
| RA | 443,022 | G→A | 6.4% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 6.5% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 470,566 | G→C | 5.6% | D566H (GAT→CAT) | mdlA → | putative multidrug ABC transporter ATPase |
| RA | 475,971 | C→G | 9.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 7.9% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 523,956 | G→T | 7.6% | G232G (GGG→GGT) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 523,959 | A→T | 8.0% | E233D (GAA→GAT) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 523,960 | A→T | 8.0% | I234F (ATC→TTC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 523,963 | A→C | 7.7% | T235P (ACC→CCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 543,091 | G→C | 9.8% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 10.2% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 556,640 | T→A | 6.6% | intergenic (‑87/+21) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,641 | G→T | 6.4% | intergenic (‑88/+20) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,642 | A→C | 6.6% | intergenic (‑89/+19) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 556,643 | T→A | 6.6% | intergenic (‑90/+18) | ybcI ← / ← ybcJ | DUF457 family inner membrane protein/ribosome‑associated protein; putative RNA‑binding protein |
| RA | 574,486:1 | +C | 9.5% | intergenic (+147/+43) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 574,494 | A→G | 12.2% | intergenic (+155/+35) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 574,495 | A→T | 12.1% | intergenic (+156/+34) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 574,496 | C→T | 12.0% | intergenic (+157/+33) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 574,504 | Δ1 bp | 10.3% | intergenic (+165/+25) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| RA | 594,946 | C→A | 5.7% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 5.7% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 5.9% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 603,391 | C→G | 5.6% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 5.9% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 5.7% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 642,936 | G→A | 9.3% | L283L (CTG→CTA) | ybdR → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 650,529 | G→A | 6.2% | R85R (CGC→CGT) | citD ← | citrate lyase, acyl carrier (gamma) subunit |
| RA | 650,532 | T→C | 5.8% | A84A (GCA→GCG) | citD ← | citrate lyase, acyl carrier (gamma) subunit |
| RA | 657,531 | T→G | 7.3% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 7.2% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 7.3% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,204 | C→T | 6.8% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 7.3% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 7.3% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 9.0% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 665,038 | T→C | 5.4% | E51E (GAA→GAG) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 696,325 | G→T | 5.9% | intergenic (+49/+105) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,328 | A→C | 6.0% | intergenic (+52/+102) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 720,070 | G→A | 5.8% | H131Y (CAT→TAT) | speF ← | ornithine decarboxylase isozyme, inducible |
| RA | 725,276 | G→A | 7.3% | Y587Y (TAC→TAT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,279 | T→C | 7.4% | K586K (AAA→AAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 746,774 | C→T | 5.8% | G332G (GGG→GGA) | abrB ← | regulator of aidB expression; inner membrane protein |
| RA | 847,213 | A→T | 7.6% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 7.1% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 8.4% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 878,446 | G→A | 7.0% | E67K (GAA→AAA) | bssR → | repressor of biofilm formation by indole transport regulation |
| RA | 892,455 | G→C | 6.5% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 6.8% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 6.8% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 898,067 | G→A | 8.3% | V27M (GTG→ATG) | ybjO → | DUF2593 family inner membrane protein |
| RA | 907,066 | G→T | 5.2% | T406K (ACG→AAG) | ybjT ← | putative NAD‑dependent oxidoreductase |
| RA | 907,069 | A→C | 5.2% | L405R (CTT→CGT) | ybjT ← | putative NAD‑dependent oxidoreductase |
| RA | 926,168 | C→T | 5.6% | intergenic (‑197/+57) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,174 | A→T | 5.8% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 5.5% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 949,741 | Δ1 bp | 5.6% | coding (74/591 nt) | ycaK → | putative NAD(P)H‑dependent oxidoreductase |
| RA | 949,745:1 | +G | 5.7% | coding (78/591 nt) | ycaK → | putative NAD(P)H‑dependent oxidoreductase |
| RA | 964,922 | T→A | 5.7% | G201G (GGT→GGA) | ycaI → | ComEC family inner membrane protein |
| RA | 993,254 | A→G | 13.3% | intergenic (+20/+23) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,255 | A→C | 13.3% | intergenic (+21/+22) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,258 | G→T | 12.5% | intergenic (+24/+19) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,259 | C→T | 12.5% | intergenic (+25/+18) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 1,005,312 | G→A | 5.2% | R182H (CGC→CAC) | pyrD → | dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,015,912 | T→A | 6.5% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 20.9% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 20.9% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,038,117 | C→G | 5.4% | H126Q (CAC→CAG) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,038,118 | C→G | 5.6% | L127V (CTG→GTG) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,038,441 | C→G | 5.4% | T234T (ACC→ACG) | cbdA → | cytochrome bd‑II oxidase, subunit I |
| RA | 1,075,435 | C→T | 5.7% | A1150T (GCA→ACA) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,094,293 | T→C | 7.5% | E283E (GAA→GAG) | insF1 ← | IS3 transposase B |
| RA | 1,113,544 | G→A | 7.2% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 7.3% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 7.3% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,116,250 | G→A | 5.8% | I111I (ATC→ATT) | lpxL ← | lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 1,147,980 | G→T | 7.3% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 8.9% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 8.9% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 8.9% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,169,380 | T→C | 11.4% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 11.1% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 11.1% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,224,239 | A→T | 9.1% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 8.2% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,296,980 | C→T | 5.2% | R381H (CGC→CAC) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,304,469 | C→G | 5.0% | R212R (CGC→CGG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,479 | C→G | 5.0% | P216A (CCG→GCG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,311,285 | A→C | 5.4% | E66A (GAG→GCG) ‡ | tonB → | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| RA | 1,311,286 | G→T | 6.1% | E66D (GAG→GAT) ‡ | tonB → | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| RA | 1,321,427 | A→T | 7.5% | L507Q (CTG→CAG) | trpE ← | component I of anthranilate synthase |
| RA | 1,321,432 | A→T | 7.5% | A505A (GCT→GCA) | trpE ← | component I of anthranilate synthase |
| RA | 1,381,915 | G→T | 9.2% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,381,918 | A→C | 9.0% | intergenic (+16/‑29) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,388,283 | C→T | 14.9% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 15.2% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 15.2% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,426,418 | T→G | 5.5% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,492,061 | T→G | 14.9% | N4T (AAC→ACC) Q23H (CAA→CAC) |
hokB ← mokB ← |
toxic polypeptide, small regulatory peptide |
| RA | 1,503,142 | G→T | 10.3% | intergenic (+17/+76) | ydcL → / ← insP | lipoprotein/pseudogene, IS609 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,503,143 | T→A | 10.1% | intergenic (+18/+75) | ydcL → / ← insP | lipoprotein/pseudogene, IS609 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,503,144 | T→A | 10.2% | intergenic (+19/+74) | ydcL → / ← insP | lipoprotein/pseudogene, IS609 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,503,145 | A→C | 9.3% | intergenic (+20/+73) | ydcL → / ← insP | lipoprotein/pseudogene, IS609 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,520,584 | A→G | 5.2% | D108G (GAC→GGC) ‡ | mcbR → | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,520,585 | C→T | 5.2% | D108D (GAC→GAT) ‡ | mcbR → | colanic acid and biofilm gene transcriptional regulator, MqsR‑controlled |
| RA | 1,598,527 | T→G | 9.2% | intergenic (‑540/+90) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
| RA | 1,598,529 | A→T | 9.4% | intergenic (‑542/+88) | yneO ← / ← lsrK | pseudogene, AidA homolog/autoinducer‑2 (AI‑2) kinase |
| RA | 1,640,749 | G→T | 10.7% | intergenic (‑164/+590) | essQ ← / ← cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
| RA | 1,674,955 | A→T | 6.1% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 6.4% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,677,301 | T→C | 6.1% | K201K (AAA→AAG) | pntA ← | pyridine nucleotide transhydrogenase, alpha subunit |
| RA | 1,679,639 | A→C | 5.6% | Q28P (CAA→CCA) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,641 | A→T | 5.4% | N29Y (AAT→TAT) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,644 | A→T | 5.7% | M30L (ATG→TTG) ‡ | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,679,646 | G→T | 5.9% | M30I (ATG→ATT) ‡ | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,703,251 | A→T | 9.5% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 9.5% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,708,295 | T→C | 8.3% | R459R (CGT→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,715,919 | T→G | 6.6% | intergenic (‑30/+29) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,715,920 | T→A | 6.6% | intergenic (‑31/+28) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,715,921 | T→A | 6.8% | intergenic (‑32/+27) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,715,922 | C→A | 6.6% | intergenic (‑33/+26) | pdxY ← / ← tyrS | pyridoxamine kinase/tyrosyl‑tRNA synthetase |
| RA | 1,717,186 | G→A | 5.1% | R13W (CGG→TGG) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,728,608 | G→A | 5.2% | G88S (GGC→AGC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
| RA | 1,763,267 | A→G | 5.4% | V248A (GTC→GCC) | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,764,693 | C→T | 6.3% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 7.5% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,800,561 | T→C | 5.9% | L26L (TTA→TTG) | infC ← | translation initiation factor IF‑3 |
| RA | 1,830,061 | G→T | 5.3% | A235A (GCC→GCA) | astA ← | arginine succinyltransferase |
| RA | 1,835,815 | G→A | 6.9% | A101T (GCT→ACT) | ynjA → | carboxymuconolactone decarboxylase family protein |
| RA | 1,842,367 | A→G | 5.5% | intergenic (‑232/‑4) | ynjH ← / → gdhA | DUF1496 family protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,880,806 | T→A | 5.6% | intergenic (‑47/+80) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,851 | T→A | 7.1% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 7.2% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,890,754 | C→A | 6.3% | D172Y (GAT→TAT) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| RA | 1,912,748 | T→G | 7.2% | intergenic (‑172/+20) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,912,749 | T→A | 7.2% | intergenic (‑173/+19) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,912,750 | T→A | 7.2% | intergenic (‑174/+18) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,912,751 | C→A | 7.1% | intergenic (‑175/+17) | htpX ← / ← prc | putative endopeptidase/carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,948,179 | T→A | 5.7% | intergenic (‑28/+1) | yebC ← / ← nudB | UPF0082 family protein/dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,948,180 | T→A | 5.7% | *151C (TGA→TGT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 9.6% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 2,000,368 | C→T | 5.5% | L6L (CTG→CTA) | fliY ← | cystine transporter subunit |
| RA | 2,009,731 | A→G | 7.3% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 7.6% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 7.2% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,789 | T→C | 5.2% | intergenic (+77/‑32) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,025,578 | G→A | 8.4% | S23N (AGT→AAT) ‡ | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,025,579 | T→C | 8.7% | S23S (AGT→AGC) ‡ | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,028,147 | C→T | 7.2% | intergenic (‑130/+41) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,158 | G→C | 13.3% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 13.3% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 13.3% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,059,948 | T→A | 5.1% | intergenic (+22/+16) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,074,691 | C→G | 10.8% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,168,420 | A→T | 6.9% | intergenic (‑114/‑292) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
| RA | 2,168,423 | A→T | 6.6% | intergenic (‑117/‑289) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
| RA | 2,171,481 | G→A | 5.9% | pseudogene (247/299 nt) | gatR ← | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| RA | 2,172,226 | G→A | 5.2% | S216S (AGC→AGT) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,193,709 | T→A | 5.2% | M154L (ATG→TTG) | mrp ← | antiporter inner membrane protein |
| RA | 2,235,729 | Δ1 bp | 6.0% | coding (465/1236 nt) | preA → | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C |
| RA | 2,238,817 | A→T | 5.1% | I158N (ATC→AAC) | mglA ← | methyl‑galactoside ABC transporter ATPase |
| RA | 2,259,549 | A→T | 5.4% | intergenic (‑253/+170) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,550 | A→T | 5.7% | intergenic (‑254/+169) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,553 | A→T | 5.6% | intergenic (‑257/+166) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,554 | A→T | 5.6% | intergenic (‑258/+165) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,311,616 | C→T | 10.9% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 11.5% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,314,800 | A→C | 7.0% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 7.0% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,333,003 | C→T | 7.8% | pseudogene (1400/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,346,318 | C→T | 5.1% | A485V (GCG→GTG) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,359,750 | G→T | 5.8% | Q135K (CAG→AAG) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,364,995 | T→G | 11.3% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 11.4% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,368,057 | G→T | 5.1% | A7S (GCC→TCC) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,407,399 | C→A | 10.6% | intergenic (‑758/‑162) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,462,677 | A→T | 10.4% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 10.0% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 10.0% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,465,188 | A→G | 5.9% | intergenic (‑181/‑113) | mlaA ← / → yfdC | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component/putative inner membrane protein |
| RA | 2,477,014 | C→A | 5.2% | A206S (GCA→TCA) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,016 | T→A | 5.4% | Q205L (CAG→CTG) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,018 | T→A | 5.6% | R204S (AGA→AGT) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,020 | T→A | 5.6% | R204* (AGA→TGA) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,022 | T→G | 5.6% | D203A (GAC→GCC) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,493,562 | T→A | 7.0% | intergenic (‑308/+205) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,493,563 | T→A | 7.0% | intergenic (‑309/+204) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,493,744 | C→T | 6.5% | intergenic (‑490/+23) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,518,197 | C→G | 6.8% | noncoding (35/76 nt) | alaW ← | tRNA‑Ala |
| RA | 2,532,268 | T→C | 7.7% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,272 | T→A | 8.1% | intergenic (+48/‑137) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,275 | T→A | 6.8% | intergenic (+51/‑134) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,279 | G→A | 7.1% | intergenic (+55/‑130) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,536,047 | T→G | 85.0% | F72V (TTT→GTT) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,560,326 | A→G | 7.1% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 6.3% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,205 | A→T | 5.3% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 5.3% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,579,569 | G→A | 5.5% | A302T (GCC→ACC) | talA → | transaldolase A |
| RA | 2,589,122 | G→A | 11.0% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 12.1% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,590,767 | T→C | 10.4% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 10.3% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,775 | G→A | 10.4% | intergenic (+67/+32) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,652,372 | C→T | 5.2% | intergenic (‑85/‑122) | yfhM ← / → sseA | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein/3‑mercaptopyruvate sulfurtransferase |
| RA | 2,653,367 | G→A | 9.9% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 9.7% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,657,460 | A→G | 5.3% | V492V (GTT→GTC) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,663,466 | G→T | 7.0% | V9L (GTG→TTG) | suhB → | inositol monophosphatase |
| RA | 2,663,474 | A→T | 5.5% | A11A (GCA→GCT) | suhB → | inositol monophosphatase |
| RA | 2,663,482 | A→C | 5.3% | K14T (AAG→ACG) | suhB → | inositol monophosphatase |
| RA | 2,694,475 | C→A | 6.6% | E357* (GAG→TAG) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,704,304 | A→G | 17.4% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 17.4% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 17.4% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,706,121:1 | +T | 6.8% | coding (1004/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,134 | Δ1 bp | 7.3% | coding (991/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,606 | G→T | 6.2% | L173L (CTC→CTA) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,607 | A→C | 6.4% | L173R (CTC→CGC) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,715,258 | A→G | 11.7% | A21A (GCT→GCC) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,715,260 | C→T | 11.3% | A21T (GCT→ACT) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,731,073 | A→T | 7.1% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 7.1% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,750,086 | A→C | 6.8% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,761,620 | T→G | 5.4% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 5.5% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,791,876 | C→T | 6.0% | P202S (CCG→TCG) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,803,319 | G→A | 5.3% | D658N (GAT→AAT) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,814,174 | T→A | 6.1% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 6.1% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,835,936 | A→G | 6.1% | I497T (ATT→ACT) | hypF ← | carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein |
| RA | 2,856,257 | G→C | 6.4% | L640L (CTG→CTC) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,856,258 | G→C | 6.4% | E641Q (GAG→CAG) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,873,915 | A→G | 6.4% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 6.4% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 6.4% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,875,275 | G→A | 5.5% | H49Y (CAC→TAC) | cysN ← | sulfate adenylyltransferase, subunit 1 |
| RA | 2,948,951 | C→T | 5.0% | M20I (ATG→ATA) | amiC ← | N‑acetylmuramoyl‑L‑alanine amidase |
| RA | 3,071,095 | A→T | 6.5% | A50A (GCT→GCA) | fbaA ← | fructose‑bisphosphate aldolase, class II |
| RA | 3,078,186 | C→T | 5.3% | G225D (GGC→GAC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,078,191 | A→G | 5.9% | G223G (GGT→GGC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,105,056 | G→A | 5.1% | S208S (TCG→TCA) | mltC → | membrane‑bound lytic murein transglycosylase C |
| RA | 3,156,590 | C→A | 7.9% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 7.8% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,166,154 | T→C | 5.4% | Q522R (CAG→CGG) ‡ | ygiS ← | putative ABC transporter permease |
| RA | 3,166,155 | G→C | 5.7% | Q522E (CAG→GAG) ‡ | ygiS ← | putative ABC transporter permease |
| RA | 3,166,156 | G→A | 5.6% | P521P (CCC→CCT) | ygiS ← | putative ABC transporter permease |
| RA | 3,169,260 | Δ1 bp | 7.0% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265:1 | +T | 7.9% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,180,505 | G→T | 7.7% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 7.4% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,191,651 | G→T | 5.1% | E340D (GAG→GAT) | yqiI → | fimbrial protein |
| RA | 3,218,415 | T→C | 5.4% | K221R (AAG→AGG) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,239,609 | T→G | 8.0% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 7.8% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 7.8% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,288,032 | C→A | 10.9% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 10.9% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,330,407 | A→G | 5.6% | intergenic (+11/+175) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,415 | Δ1 bp | 5.7% | intergenic (+19/+167) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,419:1 | +T | 5.6% | intergenic (+23/+163) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,427 | C→T | 5.9% | intergenic (+31/+155) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,332,822 | G→A | 24.4% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 24.5% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 7.9% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 8.1% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 8.1% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,350,678 | Δ1 bp | 7.7% | noncoding (102/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,350,682:1 | +A | 8.2% | noncoding (106/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,368,982 | G→C | 7.6% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,448,050 | C→A | 6.1% | G34C (GGC→TGC) | rplN ← | 50S ribosomal subunit protein L14 |
| RA | 3,448,051 | T→G | 6.1% | A33A (GCA→GCC) | rplN ← | 50S ribosomal subunit protein L14 |
| RA | 3,451,410 | T→A | 9.8% | N92I (AAT→ATT) | rplW ← | 50S ribosomal subunit protein L23 |
| RA | 3,451,416 | C→A | 9.7% | G90V (GGC→GTC) | rplW ← | 50S ribosomal subunit protein L23 |
| RA | 3,468,851 | A→G | 6.0% | Y335H (TAC→CAC) | chiA ← | periplasmic endochitinase |
| RA | 3,471,357 | C→T | 5.8% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 5.4% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 5.4% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,504,555 | T→C | 5.1% | Y168Y (TAT→TAC) | frlR → | putative DNA‑binding transcriptional regulator |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,601,824 | G→C | 7.9% | P88R (CCC→CGC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,601,825 | G→C | 7.9% | P88A (CCC→GCC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,642,358 | T→A | 13.6% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 13.9% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,708,579 | G→A | 25.0% | intergenic (‑874/+37) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,722,300 | G→T | 6.0% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,722,301 | A→C | 6.1% | intergenic (+196/+27) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,774,207 | C→T | 5.0% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 7.1% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,798,234 | A→T | 5.8% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 5.8% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,891,502 | C→G | 9.3% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 8.9% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 8.8% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,895,324 | A→G | 5.5% | I429T (ATC→ACC) | adeP ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 3,900,410 | A→T | 6.8% | P56P (CCT→CCA) | yieL ← | putative xylanase |
| RA | 3,959,515 | T→A | 5.7% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,415 | A→C | 8.6% | L272R (CTG→CGG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,416 | G→T | 8.4% | L272M (CTG→ATG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,972,574 | T→C | 5.5% | V18A (GTG→GCG) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| JC | 3,993,337 | Δ11 bp | 9.2% | coding (2185‑2195/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,014,759 | C→T | 5.1% | S569S (AGC→AGT) | metE → | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| RA | 4,022,007 | C→T | 5.5% | G21G (GGC→GGT) | tatA → | TatABCE protein translocation system subunit |
| RA | 4,040,661 | G→A | 12.8% | intergenic (+25/+245) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,066,800 | A→G | 6.1% | F132S (TTT→TCT) | yihP ← | putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein |
| RA | 4,082,696 | G→C | 14.7% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,086,807 | T→C | 12.5% | G264G (GGT→GGC) | fdhD → | formate dehydrogenase formation protein |
| RA | 4,116,516 | G→T | 72.6% | T236K (ACG→AAG) | glpK ← | glycerol kinase |
| RA | 4,116,536 | G→T | 12.6% | N229K (AAC→AAA) | glpK ← | glycerol kinase |
| RA | 4,116,937 | T→G | 7.0% | K96Q (AAG→CAG) | glpK ← | glycerol kinase |
| RA | 4,127,938 | T→A | 7.7% | intergenic (‑44/+140) | yiiX ← / ← metJ | putative lipid binding hydrolase, DUF830 family protein/transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,127,941 | T→A | 7.8% | intergenic (‑47/+137) | yiiX ← / ← metJ | putative lipid binding hydrolase, DUF830 family protein/transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,177,171 | T→A | 6.0% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 5.6% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,193,851 | C→T | 5.5% | A118A (GCG→GCA) | thiE ← | thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
| RA | 4,213,131 | C→T | 10.7% | noncoding (92/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,217,943 | T→C | 5.7% | Y279H (TAT→CAT) | aceA → | isocitrate lyase |
| RA | 4,275,559 | C→T | 5.1% | A30V (GCC→GTC) | yjcC → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,277,940 | A→C | 7.1% | noncoding (127/140 nt) | ryjA ← | novel sRNA, function unknown |
| RA | 4,277,941 | C→T | 7.1% | noncoding (126/140 nt) | ryjA ← | novel sRNA, function unknown |
| RA | 4,277,942 | A→T | 7.1% | noncoding (125/140 nt) | ryjA ← | novel sRNA, function unknown |
| RA | 4,277,944 | G→T | 6.8% | noncoding (123/140 nt) | ryjA ← | novel sRNA, function unknown |
| RA | 4,296,060 | C→T | 19.1% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,300,041 | A→G | 5.7% | D330D (GAT→GAC) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,315,437 | A→T | 5.9% | F34L (TTT→TTA) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,438 | A→T | 5.9% | F34Y (TTT→TAT) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,439 | A→T | 5.9% | F34I (TTT→ATT) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,335,654 | T→A | 5.9% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 5.9% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,336,974 | A→T | 5.0% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,979 | A→C | 5.1% | M18R (ATG→AGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,983 | G→T | 5.0% | L17M (CTG→ATG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,988 | A→T | 6.4% | V15D (GTC→GAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,342,142 | G→A | 5.1% | D78N (GAT→AAT) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,356,445 | A→T | 13.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 12.9% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,365,581 | G→C | 5.4% | T398S (ACT→AGT) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,419,860 | G→T | 20.9% | intergenic (‑235/‑120) | ulaG ← / → ulaA | L‑ascorbate 6‑phosphate lactonase/L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,422,895 | C→G | 5.0% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,448,274 | G→A | 5.6% | intergenic (+39/‑173) | ytfP → / → chpS | GGCT‑like protein/antitoxin of the ChpBS toxin‑antitoxin system |
| RA | 4,520,500 | Δ1 bp | 20.9% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 20.0% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,549,932 | T→A | 7.1% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,553,154 | G→T | 6.7% | G85V (GGC→GTC) | uxuB → | D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,554,516 | A→G | 5.7% | intergenic (+155/‑60) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,517 | A→C | 5.7% | intergenic (+156/‑59) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,523 | T→G | 5.6% | intergenic (+162/‑53) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,524 | C→A | 5.7% | intergenic (+163/‑52) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,566,645 | T→A | 6.0% | K201I (AAA→ATA) ‡ | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,566,646 | T→A | 6.0% | K201* (AAA→TAA) ‡ | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,641,005 | G→A | 5.1% | A22T (GCA→ACA) | yjtD → | putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2229115 | 2229299–2229294 | 180–185 | 32 [31] | [30] 32 | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | * | ÷ | NC_000913 | 3423758–3424234 | 3424549–3424238 | 5–792 | 32 [29] | [29] 32 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 127761 | 59 (0.670) | 4 (0.050) | 4/242 | NT | 6.9% | intergenic (+174/‑151) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | = 127874 | 53 (0.640) | intergenic (+287/‑38) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913 | 228359 = | NA (NA) | 4 (0.050) | 4/244 | NT | NA | noncoding (2601/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228397 = | NA (NA) | noncoding (2639/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 7 (0.080) | 7/242 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 3 (0.040) | 3/238 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 623559 = | 63 (0.720) | 6 (0.070) | 5/240 | NT | 8.2% | coding (952/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein |
| ? | NC_000913 | 623598 = | 75 (0.910) | coding (913/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 624184 | 51 (0.580) | 3 (0.040) | 3/238 | NT | 5.6% | coding (327/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 624208 | 53 (0.650) | coding (303/957 nt) | fepB | ferrienterobactin ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 37 (0.420) | 47 (0.610) | 37/224 | NT | 57.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 37 (0.480) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 39 (0.440) | 42 (0.550) | 32/224 | NT | 54.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 37 (0.480) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1229419 | 77 (0.880) | 4 (0.050) | 4/240 | NT | 5.1% | intergenic (+143/+64) | ycgN/hlyE | UPF0153 family cysteine cluster protein/hemolysin E |
| ? | NC_000913 | = 1229428 | 77 (0.930) | intergenic (+152/+55) | ycgN/hlyE | UPF0153 family cysteine cluster protein/hemolysin E | |||||
| * | ? | NC_000913 | 1270346 = | 52 (0.590) | 5 (0.060) | 4/240 | NT | 7.8% | intergenic (‑1/‑47) | ldrC/rdlC | toxic polypeptide, small/sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC |
| ? | NC_000913 | 1270384 = | 70 (0.850) | intergenic (‑39/‑9) | ldrC/rdlC | toxic polypeptide, small/sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 73 (0.860) | 53/248 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1733862 | 57 (0.650) | 3 (0.040) | 3/242 | NT | 5.5% | coding (240/348 nt) | grxD | glutaredoxin‑4 |
| ? | NC_000913 | = 1733891 | 49 (0.590) | coding (211/348 nt) | grxD | glutaredoxin‑4 | |||||
| * | ? | NC_000913 | 1802644 = | 96 (1.090) | 6 (0.070) | 6/240 | NT | 6.0% | intergenic (‑74/‑450) | thrS/arpB | threonyl‑tRNA synthetase/pseudogene, ankyrin repeats |
| ? | NC_000913 | 1802688 = | 98 (1.190) | intergenic (‑118/‑406) | thrS/arpB | threonyl‑tRNA synthetase/pseudogene, ankyrin repeats | |||||
| * | ? | NC_000913 | = 2156030 | 77 (0.880) | 4 (0.050) | 4/242 | NT | 5.0% | coding (768/3123 nt) | mdtB | multidrug efflux system, subunit B |
| ? | NC_000913 | = 2156057 | 79 (0.950) | coding (795/3123 nt) | mdtB | multidrug efflux system, subunit B | |||||
| * | ? | NC_000913 | 2456272 = | 69 (0.780) | 6 (0.070) | 3/240 | NT | 7.6% | intergenic (‑626/+55) | yfcV/sixA | putative fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | NC_000913 | 2456331 = | 81 (0.980) | coding (482/486 nt) | sixA | phosphohistidine phosphatase | |||||
| * | ? | NC_000913 | 2556426 = | 70 (0.800) | 5 (0.060) | 5/248 | NT | 6.8% | coding (872/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| ? | NC_000913 | 2556452 = | 69 (0.810) | coding (846/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) | |||||
| * | ? | NC_000913 | 2729475 = | 23 (0.260) | 5 (0.060) | 3/236 | NT | 18.8% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 22 (0.270) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 3108463 = | 72 (0.820) | 4 (0.050) | 4/246 | NT | 5.6% | coding (693/2136 nt) | speC | ornithine decarboxylase, constitutive |
| ? | NC_000913 | 3108494 = | 66 (0.780) | coding (662/2136 nt) | speC | ornithine decarboxylase, constitutive | |||||
| * | ? | NC_000913 | 3134834 = | 81 (0.920) | 5 (0.060) | 4/238 | NT | 6.7% | intergenic (+11/+38) | yghT/pitB | putative ATP‑binding protein/phosphate transporter |
| ? | NC_000913 | 3134863 = | 63 (0.770) | intergenic (+40/+9) | yghT/pitB | putative ATP‑binding protein/phosphate transporter | |||||
| * | ? | NC_000913 | 3355961 = | 77 (0.880) | 4 (0.050) | 4/248 | NT | 5.1% | coding (1237/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | 3355986 = | 74 (0.870) | coding (1262/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913 | = 3620363 | NA (NA) | 5 (0.060) | 3/246 | NT | 100% | coding (1172/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620412 | 0 (0.000) | coding (1221/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3721045 = | 102 (1.160) | 244 (2.800) | 130/254 | NT | 73.7% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 73 (0.840) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4040683 | 21 (0.240) | 18 (0.210) | 7/252 | NT | 29.1% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 67 (0.770) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4209893 | 14 (0.160) | 4 (0.050) | 4/234 | NT | 23.8% | intergenic (+44/‑150) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | = 4209911 | NA (NA) | intergenic (+62/‑132) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4406038 | 95 (1.080) | 5 (0.060) | 5/256 | NT | 5.4% | intergenic (+53/‑152) | purA/nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| ? | NC_000913 | = 4406075 | 81 (0.920) | intergenic (+90/‑115) | purA/nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon | |||||