mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 15.1% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 15.1% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 16,923 | T→G | 11.1% | K13T (AAG→ACG) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 16,926 | C→A | 10.8% | R12L (CGT→CTT) | mokC ← | regulatory protein for HokC, overlaps CDS of hokC |
| RA | 29,839 | C→T | 5.6% | V63V (GTC→GTT) | carA → | carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| RA | 53,376 | G→A | 13.6% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 12.8% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 77,753 | Δ1 bp | 10.0% | coding (133/1179 nt) | setA → | broad specificity sugar efflux system |
| RA | 77,758:1 | +C | 10.0% | coding (138/1179 nt) | setA → | broad specificity sugar efflux system |
| RA | 78,830 | T→A | 7.0% | intergenic (+31/+18) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 78,831 | T→A | 7.0% | intergenic (+32/+17) | setA → / ← leuD | broad specificity sugar efflux system/3‑isopropylmalate dehydratase small subunit |
| RA | 87,881 | A→G | 12.7% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 11.5% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 10.9% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 104,390 | A→G | 5.3% | I137V (ATT→GTT) | ftsA → | ATP‑binding cell division FtsK recruitment protein |
| RA | 137,018 | G→C | 9.2% | intergenic (‑101/‑65) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 137,020 | A→T | 9.1% | intergenic (‑103/‑63) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 137,022 | G→C | 9.4% | intergenic (‑105/‑61) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 151,519 | A→C | 9.5% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 9.4% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,620 | C→T | 20.0% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 20.4% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 191,720 | G→A | 13.1% | intergenic (+12/‑135) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 195,331 | G→A | 6.1% | A143A (GCG→GCA) | ispU → | undecaprenyl pyrophosphate synthase |
| RA | 237,538 | T→G | 5.9% | A68A (GCT→GCG) | yafT → | lipoprotein |
| RA | 237,539 | G→C | 6.3% | A69P (GCG→CCG) ‡ | yafT → | lipoprotein |
| RA | 237,540 | C→A | 7.7% | A69E (GCG→GAG) ‡ | yafT → | lipoprotein |
| RA | 242,344 | C→G | 6.6% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 254,223 | A→T | 6.4% | intergenic (+21/+36) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,228 | A→T | 7.1% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 7.4% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 7.0% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 256,449 | T→C | 10.7% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 10.5% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 10.9% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,330:1 | +G | 6.2% | intergenic (+141/‑250) | insN → / → eyeA | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge |
| RA | 289,255 | T→A | 9.1% | intergenic (‑93/+46) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,256 | G→C | 10.9% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 10.9% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 314,255 | T→C | 14.6% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 14.8% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 346,022 | G→A | 12.1% | R106C (CGC→TGC) | yahN ← | amino acid exporter for proline, lysine, glutamate, homoserine |
| RA | 385,724 | T→A | 13.5% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 443,022 | G→A | 27.3% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 26.1% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 454,853 | T→C | 9.7% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 10.3% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 512,212 | T→G | 8.0% | V191G (GTG→GGG) | glsA → | glutaminase 1 |
| RA | 543,059 | T→A | 23.5% | intergenic (+26/+202) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,062 | T→A | 25.0% | intergenic (+29/+199) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 561,551 | C→T | 5.7% | Q619* (CAA→TAA) | sfmD → | putative outer membrane export usher protein |
| RA | 568,247 | A→T | 8.3% | pseudogene (213/213 nt) | renD → | pseudogene, DLP12 prophage;Phage or Prophage Related |
| RA | 681,694 | A→G | 19.3% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,699 | T→A | 19.4% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,700 | T→A | 16.4% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 691,390 | G→C | 5.5% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 699,556 | C→T | 8.3% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 8.5% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 748,806 | A→G | 7.1% | S59S (TCT→TCC) | ybgO ← | putative fimbrial protein |
| RA | 756,643 | T→A | 14.0% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 762,862 | A→G | 11.6% | intergenic (+123/‑152) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,863 | A→C | 11.7% | intergenic (+124/‑151) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,869 | A→T | 11.9% | intergenic (+130/‑145) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,870 | A→T | 11.5% | intergenic (+131/‑144) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,876 | G→T | 8.6% | intergenic (+137/‑138) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 762,877 | C→T | 8.6% | intergenic (+138/‑137) | sucB → / → sucC | dihydrolipoyltranssuccinase/succinyl‑CoA synthetase, beta subunit |
| RA | 770,679 | G→T | 10.8% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 11.1% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 781,326 | A→T | 8.3% | intergenic (+104/‑43) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 784,012 | T→A | 9.7% | Q271L (CAG→CTG) | zitB ← | zinc efflux system |
| RA | 850,993 | T→C | 12.2% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 12.2% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 12.2% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 12.8% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 871,513 | G→A | 8.2% | A183T (GCA→ACA) | gsiC → | glutathione ABC transporter permease |
| RA | 887,392 | T→A | 12.5% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 894,952 | T→A | 5.4% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 897,968:1 | +A | 13.3% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 897,973 | Δ1 bp | 12.9% | intergenic (+44/‑16) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 935,676 | C→T | 10.0% | T818I (ACC→ATC) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 940,751 | T→C | 20.8% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 20.8% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 968,406 | G→A | 11.3% | R14Q (CGG→CAG) | lpxK → | lipid A 4'kinase |
| RA | 968,409 | T→A | 10.8% | L15Q (CTA→CAA) | lpxK → | lipid A 4'kinase |
| RA | 987,560 | G→C | 26.3% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 26.3% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 998,448 | T→A | 9.3% | intergenic (+41/‑42) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,450 | T→C | 9.3% | intergenic (+43/‑40) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,451 | T→A | 9.3% | intergenic (+44/‑39) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 1,004,741 | T→G | 10.5% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,004,746 | C→A | 11.8% | intergenic (+89/‑22) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,015,088 | C→T | 7.0% | Q65* (CAA→TAA) | pqiC → | DUF330 family putative lipoprotein |
| RA | 1,043,495 | G→T | 7.5% | P239H (CCC→CAC) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,043,499 | C→G | 7.7% | D238H (GAT→CAT) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,043,503 | A→C | 7.7% | G236G (GGT→GGG) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,069,029 | C→T | 5.6% | A271T (GCC→ACC) | rutG ← | pyrimidine permease |
| RA | 1,075,515 | G→T | 11.5% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 10.9% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,111,818 | G→A | 9.3% | R319H (CGC→CAC) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| RA | 1,138,936 | A→T | 5.8% | T187S (ACA→TCA) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,147,548 | T→G | 11.8% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,549 | C→A | 11.8% | intergenic (+9/‑72) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,980 | G→T | 11.9% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 11.6% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 11.6% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 11.8% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,174,077 | G→A | 6.9% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,182,764 | G→A | 7.1% | H22H (CAC→CAT) | potD ← | spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,272,543 | A→C | 5.2% | K13Q (AAA→CAA) | chaC → | cation transport regulator |
| JC JC | 1,293,032 | IS1 (–) +9 bp | 94.5% | intergenic (‑110/‑487) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,788 | T→C | 16.6% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,324,837 | A→C | 14.6% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 14.6% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 16.4% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,355,187 | A→G | 14.8% | V95A (GTG→GCG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,355,188 | C→T | 13.0% | V95M (GTG→ATG) ‡ | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,426,178 | A→T | 21.4% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,449,050 | T→A | 16.5% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,462,028 | G→A | 21.2% | G379D (GGT→GAT) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,462,029 | T→C | 21.2% | G379G (GGT→GGC) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,482,222 | A→T | 10.7% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,224 | T→G | 10.7% | intergenic (+23/+31) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,227 | C→A | 10.0% | intergenic (+26/+28) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,229 | A→T | 10.2% | intergenic (+28/+26) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,516,507 | T→C | 6.9% | G310G (GGT→GGC) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,517,481 | C→G | 10.2% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 10.5% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,537,165 | G→A | 6.1% | L49L (CTG→TTG) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,597,272 | T→A | 9.5% | pseudogene (716/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,603,724 | A→C | 7.6% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 7.7% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,620,224 | C→G | 9.1% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 9.4% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,642,370 | C→G | 15.3% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 15.4% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,701,108 | A→T | 7.4% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,703,251 | A→T | 15.1% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 15.1% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,727,084 | Δ1 bp | 5.9% | coding (426/1098 nt) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,727,086 | G→A | 6.3% | R143H (CGT→CAT) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,763,451 | C→T | 10.2% | V187M (GTG→ATG) | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,764,687 | T→C | 10.0% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 10.8% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 10.8% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 10.8% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 11.1% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,768,022 | G→A | 9.3% | R222C (CGT→TGT) | ydiJ ← | putative FAD‑linked oxidoreductase |
| RA | 1,804,180 | G→A | 7.5% | pseudogene (663/1476 nt) | arpB → | pseudogene, ankyrin repeats |
| RA | 1,829,322 | A→C | 15.2% | L138R (CTG→CGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,328 | C→G | 15.6% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,334 | G→T | 17.2% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,865,682 | G→C | 17.6% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,880,851 | T→A | 13.6% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 13.6% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,904,592 | C→A | 9.8% | T233N (ACT→AAT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,904,595 | T→G | 9.7% | I234S (ATT→AGT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,928,799 | A→C | 9.4% | L14R (CTT→CGT) | ptrB ← | protease II |
| RA | 1,928,802 | G→T | 9.6% | T13K (ACG→AAG) | ptrB ← | protease II |
| RA | 1,941,461 | T→A | 10.6% | I59F (ATT→TTT) | mepM ← | murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| RA | 1,954,256 | T→A | 7.5% | I272N (ATT→AAT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,979,525 | T→C | 8.2% | intergenic (‑310/‑228) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,028,158 | G→C | 13.2% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 13.2% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 13.2% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,041,159 | G→A | 14.3% | intergenic (+41/‑216) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,160 | T→G | 14.3% | intergenic (+42/‑215) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,166 | G→T | 13.9% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,167 | A→C | 13.9% | intergenic (+49/‑208) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,173 | C→A | 17.1% | intergenic (+55/‑202) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,174 | T→C | 15.4% | intergenic (+56/‑201) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,048,920 | C→T | 8.2% | A1328V (GCG→GTG) | yeeJ → | putative adhesin |
| RA | 2,059,939 | G→T | 8.8% | intergenic (+13/+25) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,946 | T→A | 8.3% | intergenic (+20/+18) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,948 | T→A | 8.5% | intergenic (+22/+16) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,950 | T→A | 8.5% | intergenic (+24/+14) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,059,957 | A→C | 8.1% | intergenic (+31/+7) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,081,057 | A→G | 8.8% | V69A (GTG→GCG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,081,058 | C→T | 8.8% | V69M (GTG→ATG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,085,675 | C→T | 9.1% | intergenic (‑150/+29) | yeeE ← / ← plaP | UPF0394 family inner membrane protein/putrescine importer, low affinity |
| RA | 2,086,636 | C→T | 7.1% | A143T (GCC→ACC) | plaP ← | putrescine importer, low affinity |
| RA | 2,090,122 | A→G | 24.1% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 23.3% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 22.6% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 15.0% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 14.6% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 14.6% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,123,616 | T→C | 10.0% | D302G (GAT→GGT) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,622 | T→A | 10.3% | H300L (CAC→CTC) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,625 | C→G | 10.0% | C299S (TGC→TCC) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,626 | A→C | 10.0% | C299G (TGC→GGC) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,633 | G→T | 10.8% | G296G (GGC→GGA) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,634 | C→G | 10.2% | G296A (GGC→GCC) ‡ | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,123,637 | T→A | 10.3% | E295V (GAG→GTG) | cpsB ← | mannose‑1‑phosphate guanyltransferase |
| RA | 2,137,778 | A→G | 10.8% | intergenic (‑535/‑124) | wza ← / → yegH | colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein |
| RA | 2,140,400 | G→A | 10.0% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 10.4% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,153,792 | T→G | 10.6% | intergenic (+13/‑224) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,153,793 | C→G | 10.6% | intergenic (+14/‑223) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,153,794 | C→A | 10.6% | intergenic (+15/‑222) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,270,602 | T→C | 8.9% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 10.0% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,285,091 | C→T | 7.5% | P239L (CCA→CTA) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,375,483 | A→T | 6.4% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 6.4% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,404,495 | C→T | 6.1% | G40D (GGC→GAC) | nuoB ← | NADH:ubiquinone oxidoreductase, chain B |
| RA | 2,428,039 | A→T | 5.3% | intergenic (‑248/+18) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,474,878 | T→C | 10.2% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 11.4% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,521,500 | C→T | 46.3% | intergenic (+172/+93) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,502 | A→T | 42.9% | intergenic (+174/+91) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,504 | A→G | 43.0% | intergenic (+176/+89) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,532,268 | T→C | 21.0% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,272 | T→A | 24.3% | intergenic (+48/‑137) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,275 | T→A | 18.8% | intergenic (+51/‑134) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,279 | G→A | 18.8% | intergenic (+55/‑130) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,578,178 | Δ1 bp | 9.1% | coding (200/2280 nt) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,578,180 | C→G | 9.1% | L66L (CTG→CTC) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,578,185 | T→A | 9.1% | N65Y (AAC→TAC) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,578,190 | C→G | 9.1% | R63P (CGA→CCA) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,578,191:1 | +T | 8.9% | coding (187/2280 nt) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,589,122 | G→A | 7.1% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,590,767 | T→C | 13.2% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 12.5% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,775 | G→A | 12.2% | intergenic (+67/+32) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,625,042 | A→G | 8.3% | N667D (AAT→GAT) | ppk → | polyphosphate kinase, component of RNA degradosome |
| RA | 2,637,433 | C→T | 16.3% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 15.7% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 15.7% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 16.3% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,683 | G→A | 6.4% | H324Y (CAT→TAT) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,640,053 | C→T | 11.8% | A175T (GCC→ACC) | hisS ← | histidyl tRNA synthetase |
| RA | 2,653,367 | G→A | 51.8% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 50.0% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,691,169 | A→T | 15.8% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 15.1% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 14.6% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,697,952 | C→G | 8.3% | R200P (CGA→CCA) | pgpC ← | phosphatidylglycerophosphatase C, membrane bound |
| RA | 2,716,030 | T→G | 22.9% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 22.2% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 8.6% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 12.5% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 9.1% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,761,620 | T→G | 10.4% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 10.5% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,768,609 | T→C | 12.7% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 12.6% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 12.7% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 11.4% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,770,319 | C→G | 8.5% | P206R (CCG→CGG) | yfjR → | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| RA | 2,778,123 | G→T | 23.3% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 23.2% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,796,375 | T→A | 8.2% | I138F (ATT→TTT) | ygaU ← | uncharacterized protein |
| RA | 2,822,445 | T→A | 8.8% | E65D (GAA→GAT) ‡ | recX ← | regulatory protein for RecA |
| RA | 2,822,446 | T→A | 8.8% | E65V (GAA→GTA) ‡ | recX ← | regulatory protein for RecA |
| RA | 2,823,636 | G→A | 7.5% | S45L (TCG→TTG) | recA ← | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,838,222 | A→T | 8.2% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,850,155 | T→G | 5.2% | Q94P (CAG→CCG) | hycA ← | regulator of the transcriptional regulator FhlA |
| RA | 2,902,494 | G→T | 10.4% | G200V (GGA→GTA) ‡ | ygcE → | putative kinase |
| RA | 2,902,495 | A→C | 10.7% | G200G (GGA→GGC) ‡ | ygcE → | putative kinase |
| RA | 2,907,385 | C→G | 6.2% | G186A (GGT→GCT) | eno ← | enolase |
| RA | 2,907,390 | G→C | 6.0% | R184R (CGC→CGG) | eno ← | enolase |
| RA | 2,907,393 | G→C | 5.9% | I183M (ATC→ATG) | eno ← | enolase |
| RA | 2,907,398 | C→G | 6.1% | A182P (GCC→CCC) | eno ← | enolase |
| RA | 2,918,017 | C→T | 11.8% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 11.4% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 11.4% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 11.4% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,923,969 | C→G | 9.8% | E49Q (GAG→CAG) | yqcC ← | DUF446 family protein |
| RA | 2,923,970 | C→G | 9.8% | L48L (CTG→CTC) | yqcC ← | DUF446 family protein |
| RA | 2,924,185 | C→T | 11.8% | noncoding (340/369 nt) | csrB ← | CsrA‑binding sRNA, antagonizing CsrA regulation |
| RA | 2,937,883 | A→G | 5.8% | K139R (AAG→AGG) | fucK → | L‑fuculokinase |
| RA | 2,951,471 | G→A | 9.2% | R331C (CGC→TGC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,475 | T→A | 8.9% | L329L (CTA→CTT) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,479 | T→C | 9.0% | Q328R (CAG→CGG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,960,926 | G→C | 10.6% | G501G (GGC→GGG) ‡ | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,928 | C→G | 10.7% | G501R (GGC→CGC) ‡ | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,930 | G→C | 10.9% | S500C (TCC→TGC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,999,023 | G→C | 10.0% | noncoding (35/74 nt) | glyU ← | tRNA‑Gly |
| RA | 2,999,024 | G→C | 10.0% | noncoding (34/74 nt) | glyU ← | tRNA‑Gly |
| RA | 2,999,025 | G→C | 10.0% | noncoding (33/74 nt) | glyU ← | tRNA‑Gly |
| RA | 3,000,984 | G→A | 5.3% | V214M (GTG→ATG) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
| RA | 3,015,583 | A→C | 8.3% | M142L (ATG→CTG) ‡ | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,015,584 | T→A | 8.3% | M142K (ATG→AAG) ‡ | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,015,585 | G→T | 8.7% | M142I (ATG→ATT) ‡ | mocA → | CTP:molybdopterin cytidylyltransferase |
| RA | 3,078,191 | A→G | 5.5% | G223G (GGT→GGC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,081,338 | G→C | 9.7% | H100D (CAC→GAC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,092,774:1 | +A | 6.7% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,092,779 | Δ1 bp | 6.5% | coding (902/951 nt) | gshB → | glutathione synthetase |
| RA | 3,140,351 | C→T | 12.5% | R150H (CGC→CAC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,352 | G→C | 12.5% | R150G (CGC→GGC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,353 | A→G | 12.3% | R149R (CGT→CGC) | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,156,590 | C→A | 9.5% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 9.5% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,170,020 | G→T | 7.3% | E65* (GAA→TAA) | qseB → | quorum sensing DNA‑binding response regulator in two‑component regulatory system with QseC |
| RA | 3,176,020 | A→T | 9.5% | S272T (TCA→ACA) | cpdA ← | 3',5' cAMP phosphodiesterase |
| RA | 3,180,497 | Δ1 bp | 15.0% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 15.7% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 16.9% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 7.4% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,233,921 | T→C | 7.5% | Q75R (CAA→CGA) | higA ← | antitoxinof the HigB‑HigA toxin‑antitoxin system |
| RA | 3,239,609 | T→G | 15.0% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 14.9% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 14.8% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,288,032 | C→A | 27.0% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 27.0% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,308,194:1 | +A | 8.3% | coding (731/885 nt) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,308,200 | Δ1 bp | 7.5% | coding (725/885 nt) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,318,079 | A→T | 14.0% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,080 | A→T | 14.0% | intergenic (‑74/+133) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,088 | C→T | 9.3% | intergenic (‑82/+125) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,332,822 | G→A | 12.9% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 12.9% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 7.5% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 7.3% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 7.4% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,339,813 | T→C | 8.2% | K85E (AAA→GAA) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,339,818 | Δ1 bp | 11.1% | coding (248/810 nt) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,339,828:1 | +T | 8.5% | coding (238/810 nt) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,339,833 | G→A | 8.4% | S78L (TCG→TTG) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
| RA | 3,351,536 | G→C | 6.6% | S497* (TCA→TGA) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,354,879 | G→T | 6.2% | G52V (GGC→GTC) | gltB → | glutamate synthase, large subunit |
| RA | 3,354,882 | A→C | 6.5% | D53A (GAC→GCC) | gltB → | glutamate synthase, large subunit |
| RA | 3,359,171 | G→C | 7.7% | V1483L (GTG→CTG) | gltB → | glutamate synthase, large subunit |
| RA | 3,374,052 | C→T | 5.2% | E146E (GAG→GAA) | nanR ← | sialic acid‑inducible nan operon repressor |
| RA | 3,378,540 | C→T | 7.5% | G38S (GGT→AGT) | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,437,908 | T→A | 13.1% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 13.2% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 13.2% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 13.2% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,439,588 | G→C | 19.4% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 19.4% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,471,357 | C→T | 11.4% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 13.3% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 10.4% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 10.0% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,477,878 | T→A | 24.2% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,532,632 | G→A | 9.5% | intergenic (‑193/‑186) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,544,689 | A→T | 10.5% | R52R (CGT→CGA) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,692 | C→G | 10.3% | G51G (GGG→GGC) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,693 | C→G | 10.3% | G51A (GGG→GCG) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,696 | A→T | 10.2% | F50Y (TTC→TAC) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,558,578 | A→G | 8.7% | E104G (GAA→GGA) | rtcR → | sigma 54‑dependent transcriptional regulator of rtcBA expression |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,561,667 | G→A | 5.5% | R53C (CGT→TGT) | glpE ← | thiosulfate:cyanide sulfurtransferase (rhodanese) |
| RA | 3,637,154 | A→C | 6.9% | V86G (GTC→GGC) | yhiN ← | putative oxidoreductase |
| RA | 3,639,338 | T→C | 14.6% | intergenic (+197/+47) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,343 | T→A | 14.7% | intergenic (+202/+42) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,344 | T→A | 14.7% | intergenic (+203/+41) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,349 | G→A | 14.1% | intergenic (+208/+36) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,642,358 | T→A | 12.8% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 12.8% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 31.5% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 31.6% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 35.2% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,676,271 | A→T | 16.0% | intergenic (+163/+19) | yhjE → / ← yhjG | putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,705,726 | A→G | 7.0% | L22P (CTC→CCC) | dppB ← | dipeptide/heme ABC transporter permease |
| RA | 3,705,949 | T→C | 6.7% | intergenic (‑159/+149) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,952 | G→A | 6.8% | intergenic (‑162/+146) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,722,300 | G→T | 6.9% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,722,301 | A→C | 6.9% | intergenic (+196/+27) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,736,322 | G→T | 5.8% | intergenic (+165/+31) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,323 | A→G | 6.1% | intergenic (+166/+30) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,324 | C→T | 6.1% | intergenic (+167/+29) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,325 | A→C | 6.1% | intergenic (+168/+28) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,774,207 | C→T | 9.6% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 9.6% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 9.6% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 9.8% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 17.7% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 5.2% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 5.2% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,794,970 | G→C | 6.9% | M14I (ATG→ATC) | waaF → | ADP‑heptose:LPS heptosyltransferase II |
| RA | 3,794,973 | G→C | 6.9% | M15I (ATG→ATC) | waaF → | ADP‑heptose:LPS heptosyltransferase II |
| RA | 3,798,234 | A→T | 6.8% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 6.9% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,814,164 | G→A | 8.5% | G78D (GGT→GAT) | dut → | deoxyuridinetriphosphatase |
| RA | 3,814,167 | T→C | 8.4% | I79T (ATC→ACC) | dut → | deoxyuridinetriphosphatase |
| RA | 3,815,816 | C→G | 5.5% | intergenic (‑48/+18) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,819 | C→G | 5.5% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,817,940 | T→A | 5.7% | F61I (TTC→ATC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,948 | G→T | 6.5% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 6.4% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,957 | T→A | 5.4% | D66E (GAT→GAA) | dinD → | DNA damage‑inducible protein |
| RA | 3,821,489 | T→A | 5.1% | I21N (ATT→AAT) | gmk → | guanylate kinase |
| RA | 3,832,188 | A→T | 7.1% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 6.5% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 6.4% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,938,255 | T→A | 8.2% | L10Q (CTG→CAG) | rbsR → | transcriptional repressor of ribose metabolism |
| RA | 3,959,515 | T→A | 12.9% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,924 | A→T | 11.1% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,925 | A→T | 11.7% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 11.1% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,982,923 | A→G | 9.1% | intergenic (+112/‑35) | proM → / → aslB | tRNA‑Pro/putative AslA‑specific sulfatase‑maturating enzyme |
| JC JC | 3,992,705 | IS5 (+) +4 bp | 100% | coding (1553‑1556/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,017,216:1 | +A | 7.1% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 7.5% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,056,531 | A→G | 16.4% | intergenic (‑192/+94) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,532 | A→C | 16.4% | intergenic (‑193/+93) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,539 | T→A | 13.2% | intergenic (‑200/+86) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,540 | T→A | 13.2% | intergenic (‑201/+85) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,057,859 | T→C | 6.0% | K59R (AAA→AGA) | glnA ← | glutamine synthetase |
| RA | 4,059,813 | C→T | 5.8% | F469F (TTC→TTT) | typA → | GTP‑binding protein |
| RA | 4,060,261 | G→T | 22.7% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 22.8% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,082,696 | G→C | 11.9% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,114,536 | C→T | 7.5% | intergenic (‑64/+33) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,537 | G→T | 7.5% | intergenic (‑65/+32) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,538 | A→C | 7.6% | intergenic (‑66/+31) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,539 | A→G | 7.6% | intergenic (‑67/+30) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,117,057 | T→C | 100% | T56A (ACC→GCC) | glpK ← | glycerol kinase |
| RA | 4,126,129 | A→T | 10.2% | S228T (TCC→ACC) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,126,130 | A→T | 10.2% | G227G (GGT→GGA) | priA ← | Primosome factor n' (replication factor Y) |
| RA | 4,127,251 | C→T | 37.6% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 34.6% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,138,472 | G→T | 7.0% | T188T (ACC→ACA) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,142,509 | T→G | 9.3% | intergenic (‑288/‑21) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,142,512 | C→A | 8.8% | intergenic (‑291/‑18) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,190,350 | C→T | 8.0% | noncoding (138/161 nt) | sroH ← | novel sRNA, function unknown |
| RA | 4,199,049 | T→C | 5.5% | L87P (CTG→CCG) ‡ | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,199,050 | G→A | 5.5% | L87L (CTG→CTA) ‡ | nfi → | endonuclease V; deoxyinosine 3' endonuclease |
| RA | 4,213,179 | Δ1 bp | 10.8% | intergenic (+20/‑55) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,182 | A→T | 10.8% | intergenic (+23/‑52) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,185 | A→T | 10.8% | intergenic (+26/‑49) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,187:1 | +A | 10.8% | intergenic (+28/‑47) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,223,854 | T→C | 10.7% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 10.6% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,261,358 | T→A | 9.8% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 9.8% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 9.0% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 9.2% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,270,142 | G→A | 9.2% | intergenic (+15/‑96) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,144 | G→C | 9.4% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,146 | T→C | 9.0% | intergenic (+19/‑92) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,274,740 | G→A | 11.9% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 11.9% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 11.6% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,296,060 | C→T | 36.4% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,303,981 | G→T | 12.9% | Y43* (TAC→TAA) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,303,984 | A→C | 12.1% | A42A (GCT→GCG) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,312,080 | G→C | 9.8% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 9.8% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 9.8% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,323,312 | G→C | 9.7% | intergenic (‑82/+24) | phnE ← / ← phnD | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily/phosphonate ABC transporter periplasmic binding protein |
| RA | 4,323,313 | G→C | 9.8% | intergenic (‑83/+23) | phnE ← / ← phnD | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily/phosphonate ABC transporter periplasmic binding protein |
| RA | 4,406,392 | G→A | 8.5% | G68D (GGT→GAT) | nsrR → | nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,422,887 | G→A | 10.9% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 10.6% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,439,845 | T→A | 11.6% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,469,455 | A→G | 8.3% | T611A (ACC→GCC) ‡ | mgtA → | magnesium transporter |
| RA | 4,469,456 | C→G | 8.5% | T611S (ACC→AGC) ‡ | mgtA → | magnesium transporter |
| RA | 4,469,457 | C→T | 8.4% | T611T (ACC→ACT) ‡ | mgtA → | magnesium transporter |
| RA | 4,470,501:1 | +T | 8.2% | intergenic (+180/+26) | mgtA → / ← ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification |
| RA | 4,470,504 | G→C | 8.2% | intergenic (+183/+23) | mgtA → / ← ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification |
| RA | 4,470,507 | Δ1 bp | 8.2% | intergenic (+186/+20) | mgtA → / ← ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification |
| RA | 4,470,951 | A→C | 12.8% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 12.8% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 13.3% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 13.3% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,496,511 | A→G | 7.7% | intergenic (+22/‑164) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,496,512 | C→T | 7.7% | intergenic (+23/‑163) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,498,222 | A→T | 12.9% | intergenic (+282/‑50) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,498,223 | A→T | 12.9% | intergenic (+283/‑49) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,501,225 | C→T | 7.7% | intergenic (‑434/‑35) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
| RA | 4,501,227 | G→C | 8.1% | intergenic (‑436/‑33) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
| RA | 4,501,229 | A→G | 9.4% | intergenic (‑438/‑31) | yjgX ← / → yjgZ | pseudogene fragment/uncharacterized protein |
| RA | 4,518,147 | C→T | 8.1% | R30H (CGC→CAC) | fecI ← | RNA polymerase sigma‑19 factor, fec operon‑specific; ECF sigma factor |
| RA | 4,520,500 | Δ1 bp | 24.1% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 19.4% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 14.3% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 14.3% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,551,422 | T→A | 6.2% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,551,429 | C→T | 5.9% | intergenic (‑133/‑207) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,581,139 | G→A | 10.0% | C108C (TGC→TGT) | hsdS ← | specificity determinant for hsdM and hsdR |
| RA | 4,620,090 | C→T | 8.2% | T163I (ACC→ATC) | deoB → | phosphopentomutase |
| RA | 4,626,394 | G→A | 7.7% | Q161Q (CAG→CAA) | radA → | DNA repair protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729331 | 729479 | 149 | 15 [14] | [14] 15 | [ybfA] | [ybfA] |
| * | * | ÷ | NC_000913 | 915140–915141 | 915267 | 127–128 | 15 [11] | [13] 15 | ybjE/aqpZ | putative transporter/aquaporin Z |
| * | * | ÷ | NC_000913 | 1792217 | 1792302 | 86 | 15 [14] | [14] 15 | [nlpC] | [nlpC] |
| * | * | ÷ | NC_000913 | 2229094 | 2229284–2229262 | 169–191 | 15 [13] | [14] 15 | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| * | * | ÷ | NC_000913 | 3423755–3424234 | 3424545–3424239 | 6–791 | 16 [13] | [13] 15 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 228359 = | NA (NA) | 3 (0.060) | 3/242 | NT | NA | noncoding (2601/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228397 = | NA (NA) | noncoding (2639/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 317664 | 54 (1.060) | 4 (0.080) | 4/234 | NT | 6.9% | intergenic (+97/+62) | ykgQ/rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| ? | NC_000913 | = 317682 | 58 (1.230) | intergenic (+115/+44) | ykgQ/rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein | |||||
| * | ? | NC_000913 | = 382323 | NA (NA) | 4 (0.080) | 4/244 | NT | NA | noncoding (1064/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382348 | NA (NA) | noncoding (1089/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 17 (0.330) | 42 (0.940) | 36/222 | NT | 70.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 21 (0.470) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 15 (0.290) | 16 (0.360) | 16/222 | NT | 48.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 21 (0.470) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1826256 | 34 (0.670) | 5 (0.100) | 5/246 | NT | 13.5% | coding (668/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | = 1826287 | 31 (0.630) | coding (637/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 2330956 = | 52 (1.020) | 4 (0.080) | 4/238 | NT | 7.5% | pseudogene (3447/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | NC_000913 | 2330992 = | 50 (1.040) | pseudogene (3411/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
| * | ? | NC_000913 | = 2557039 | 37 (0.720) | 4 (0.080) | 4/244 | NT | 10.3% | coding (259/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| ? | NC_000913 | = 2557071 | 34 (0.690) | coding (227/888 nt) | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) | |||||
| * | ? | NC_000913 | 2578172 = | 37 (0.720) | 2 (0.040) | 4/242 | NT | 5.2% | coding (206/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| ? | NC_000913 | 2578198 = | 38 (0.780) | coding (180/2280 nt) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase | |||||
| * | ? | NC_000913 | 3082788 = | 24 (0.500) | 4 (0.080) | 4/240 | NT | 14.3% | noncoding (99/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 3674473 | NA (NA) | noncoding (93/93 nt) | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3169605 = | 59 (1.150) | 3 (0.060) | 3/242 | NT | 5.3% | coding (72/393 nt) | ygiW | hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| ? | NC_000913 | 3169644 = | 50 (1.030) | coding (33/393 nt) | ygiW | hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein | |||||
| * | ? | NC_000913 | = 3231308 | 40 (0.780) | 5 (0.100) | 5/240 | NT | 13.2% | noncoding (57/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | = 3231327 | 28 (0.580) | noncoding (76/283 nt) | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 3527476 | 41 (0.800) | 3 (0.060) | 3/240 | NT | 6.8% | coding (1008/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein |
| ? | NC_000913 | = 3527515 | 43 (0.890) | coding (1047/2136 nt) | yrfF | putative RcsCDB‑response attenuator, inner membrane protein | |||||
| * | ? | NC_000913 | 3721045 = | 41 (0.800) | 174 (3.430) | 107/252 | NT | 78.1% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 57 (1.120) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 4067526 = | 53 (1.040) | 3 (0.060) | 3/242 | NT | 5.3% | coding (1751/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase |
| ? | NC_000913 | 4067557 = | 56 (1.150) | coding (1720/2037 nt) | yihQ | putative sulpholipid alpha‑glucosidase; alpha‑glucosyl fluoride glucosidase | |||||
| * | ? | NC_000913 | = 4166372 | 17 (0.330) | 3 (0.060) | 3/244 | NT | 18.6% | intergenic (+87/‑287) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4166399 | 10 (0.200) | intergenic (+114/‑260) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 4246671 | 56 (1.100) | 5 (0.100) | 4/244 | NT | 8.1% | intergenic (‑252/‑113) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase |
| ? | NC_000913 | = 4246695 | 59 (1.200) | intergenic (‑276/‑89) | malE/malK | maltose transporter subunit/maltose ABC transportor ATPase | |||||
| * | ? | NC_000913 | 4390972 = | 55 (1.080) | 6 (0.120) | 4/244 | NT | 9.8% | coding (538/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| ? | NC_000913 | 4391029 = | 58 (1.180) | coding (481/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A | |||||