mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 53,413 | G→A | 100% | intergenic (+45/‑94) | U712_00230 → / → U712_00235 | Protein sspF/4‑diphosphocytidyl‑2‑C‑methyl‑D‑erythritol kinase |
| RA | CP006881 | 152,486 | G→T | 16.8% | L120F (TTG→TTT) | U712_00755 → | Energy‑coupling factor transporter transmembrane protein EcfT |
| RA | CP006881 | 214,982 | C→T | 100% | A268V (GCC→GTC) | U712_00980 → | Uncharacterized protein skfB |
| RA | CP006881 | 256,444 | C→T | 10.2% | A122T (GCC→ACC) | U712_01195 ← | Putative PTS system glucosamine‑specific EIICBA component |
| RA | CP006881 | 268,806 | A→C | 22.5% | K304N (AAA→AAC) | U712_01255 → | putative 5‑dehydro‑4‑deoxyglucarate dehydratase |
| RA | CP006881 | 414,827 | G→A | 6.2% | intergenic (+257/‑515) | U712_01885 → / → U712_01895 | Phenolic acid decarboxylase subunit C/AB hydrolase superfamily protein yclE |
| RA | CP006881 | 431,062 | A→C | 6.5% | G306G (GGT→GGG) | U712_01970 ← | putative aspartokinase |
| RA | CP006881 | 447,577 | A→C | 13.6% | V281G (GTC→GGC) | U712_02050 ← | Copper transport protein YcnJ |
| RA | CP006881 | 511,836 | A→C | 13.9% | E55D (GAA→GAC) | U712_02450 → | Protein sprT‑like protein |
| RA | CP006881 | 558,709 | T→C | 5.6% | P109P (CCA→CCG) | U712_02720 ← | putative transporter ydfM |
| RA | CP006881 | 613,446 | A→G | 5.9% | E60G (GAG→GGG) | U712_03020 → | 60 kDa chaperonin |
| RA | CP006881 | 653,393 | T→G | 12.9% | intergenic (+17/‑5) | U712_03195 → / → U712_03200 | Uncharacterized protein yeaD/Uncharacterized protein yebA |
| RA | CP006881 | 712,137 | C→T | 9.0% | R154H (CGC→CAC) | U712_03445 ← | Uncharacterized protein yezG |
| RA | CP006881 | 774,104 | A→C | 19.5% | D505A (GAC→GCC) | U712_03730 → | putative ABC transporter ATP‑binding protein YfmR |
| RA | CP006881 | 804,403 | T→G | 19.7% | C238W (TGT→TGG) | U712_03910 → | PTS system N‑acetylglucosamine‑specific EIICB component |
| RA | CP006881 | 860,775 | G→A | 5.8% | A52T (GCA→ACA) ‡ | U712_04170 → | Putative oxidoreductase CatD |
| RA | CP006881 | 860,776 | C→A | 5.1% | A52E (GCA→GAA) ‡ | U712_04170 → | Putative oxidoreductase CatD |
| RA | CP006881 | 883,744 | T→G | 22.3% | A79A (GCT→GCG) | U712_04295 → | putative siderophore transport system permease protein yfiZ |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 940,823 | A→C | 6.0% | K5N (AAA→AAC) | U712_04595 → | putative MFS‑type transporter yhcA |
| RA | CP006881 | 986,149 | G→C | 21.3% | intergenic (+15/‑235) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 986,184 | C→A | 33.1% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 999,371 | C→G | 7.0% | L262V (CTC→GTC) | U712_04880 → | UPF0053 protein yhdT |
| RA | CP006881 | 1,034,517 | T→C | 13.8% | Y42H (TAC→CAC) | U712_05065 → | Hypothetical Protein |
| RA | CP006881 | 1,046,124 | G→A | 7.4% | A44V (GCG→GTG) | U712_05140 ← | Uncharacterized protein yhgB |
| RA | CP006881 | 1,085,764 | G→T | 31.1% | intergenic (+49/‑132) | U712_05360 → / → U712_05365 | type I signal peptidase V/putative aromatic compound monooxygenase yhjG |
| RA | CP006881 | 1,091,483:1 | +T | 100% | coding (1163/1326 nt) | U712_05390 ← | NTD biosynthesis operon protein ntdA |
| RA | CP006881 | 1,121,653 | G→A | 7.7% | W461* (TGG→TGA) | U712_05520 → | Asparagine synthetase [glutamine‑hydrolyzing] 3 |
| RA | CP006881 | 1,294,949 | T→C | 7.5% | L57P (CTC→CCC) | U712_06580 → | Phage‑like element PBSX protein xkdJ |
| RA | CP006881 | 1,318,674 | T→G | 15.8% | A451A (GCT→GCG) | U712_06715 → | Putative mannosyltransferase ykcB |
| RA | CP006881 | 1,425,798 | A→G | 9.2% | T331A (ACC→GCC) | U712_07320 → | Spore photoproduct lyase |
| RA | CP006881 | 1,489,279 | T→C | 9.1% | E170G (GAA→GGA) | U712_07650 ← | Peptide deformylase 2 |
| RA | CP006881 | 1,489,645 | T→A | 5.1% | E48V (GAA→GTA) | U712_07650 ← | Peptide deformylase 2 |
| RA | CP006881 | 1,528,808 | C→A | 10.1% | intergenic (‑61/‑79) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,584,366 | A→T | 9.3% | I285L (ATA→TTA) | U712_08160 → | Aspartate carbamoyltransferase |
| RA | CP006881 | 1,596,746 | C→T | 10.5% | Q114* (CAA→TAA) | U712_08215 → | putative adenylyl‑sulfate kinase |
| RA | CP006881 | 1,613,314 | T→C | 6.0% | S331P (TCC→CCC) | U712_08290 → | Ribosomal RNA large subunit methyltransferase N |
| RA | CP006881 | 1,642,306 | T→A | 9.8% | V340D (GTT→GAT) | U712_08445 → | Uncharacterized protein ylqG |
| RA | CP006881 | 1,653,890 | T→C | 60.0% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 43.8% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,662,494 | A→G | 7.5% | E393E (GAA→GAG) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,663,209 | G→T | 55.0% | intergenic (+11/‑11) | U712_08550 → / → U712_08555 | FlaA locus uncharacterized protein ylxG/Flagellar basal‑body rod protein flgG |
| RA | CP006881 | 1,672,727 | C→T | 10.3% | S659F (TCT→TTT) | U712_08610 → | Flagellar biosynthesis protein flhA |
| RA | CP006881 | 1,683,067 | G→T | 10.5% | M76I (ATG→ATT) | U712_08670 → | Uridylate kinase |
| RA | CP006881 | 1,764,466 | G→T | 9.5% | R2875L (CGG→CTG) | U712_09005 → | Polyketide synthase PksJ |
| RA | CP006881 | 1,805,148 | A→T | 5.5% | pseudogene (7781/16546 nt) | U712_09020 → | frameshift (+1) in homopolymer run at nucleotide position 6839 in gene |
| RA | CP006881 | 1,813,539 | A→G | 5.5% | pseudogene (16172/16546 nt) | U712_09020 → | frameshift (+1) in homopolymer run at nucleotide position 6839 in gene |
| RA | CP006881 | 2,090,602 | G→A | 6.5% | T124M (ACG→ATG) | U712_10385 ← | Uncharacterized protein yodN |
| RA | CP006881 | 2,096,896 | T→C | 40.4% | I350M (ATA→ATG) | U712_10425 ← | putative aminotransferase YodT |
| RA | CP006881 | 2,134,199 | A→G | 6.1% | intergenic (‑236/+100) | U712_10660 ← / ← U712_10665 | Uncharacterized protein ypbR/Uncharacterized protein ypbQ |
| RA | CP006881 | 2,141,907 | C→T | 8.0% | W174* (TGG→TGA) | U712_10700 ← | 2‑dehydro‑3‑deoxygluconokinase |
| RA | CP006881 | 2,162,094 | A→T | 5.1% | intergenic (+53/+23) | U712_10805 → / ← U712_10810 | Penicillin‑binding protein 1A/1B/Uncharacterized protein ypoC |
| RA | CP006881 | 2,186,159 | T→G | 6.5% | I314I (ATA→ATC) | U712_10955 ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | CP006881 | 2,191,162 | C→T | 7.7% | E69E (GAG→GAA) | U712_10975 ← | Tryptophan synthase beta chain |
| RA | CP006881 | 2,200,624 | A→G | 9.8% | A42A (GCT→GCC) | U712_11025 ← | Heptaprenyl diphosphate synthase component 2 |
| RA | CP006881 | 2,200,630 | T→C | 9.7% | L40L (CTA→CTG) | U712_11025 ← | Heptaprenyl diphosphate synthase component 2 |
| RA | CP006881 | 2,200,995 | C→T | 8.3% | G161E (GGA→GAA) | U712_11030 ← | Demethylmenaquinone methyltransferase |
| RA | CP006881 | 2,228,900 | G→A | 30.9% | intergenic (‑152/‑54) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,228,902 | A→G | 31.9% | intergenic (‑154/‑52) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,228,904 | A→G | 30.9% | intergenic (‑156/‑50) | U712_11195 ← / → U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| RA | CP006881 | 2,256,420 | T→C | 57.1% | T434T (ACA→ACG) | U712_11370 ← | Stage V sporulation protein AF |
| RA | CP006881 | 2,289,100 | G→T | 100% | P184T (CCG→ACG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,372,046 | Δ1 bp | 5.3% | coding (323/573 nt) | U712_12025 ← | Signal peptidase I W |
| RA | CP006881 | 2,373,546 | G→A | 7.4% | L71L (CTG→CTA) | U712_12035 → | Uncharacterized protein yqzG |
| RA | CP006881 | 2,398,082 | A→G | 6.3% | I144T (ATA→ACA) | U712_12210 ← | putative ABC transporter permease protein yqgH |
| RA | CP006881 | 2,449,904 | G→T | 17.5% | I233I (ATC→ATA) | U712_12480 ← | Elongation factor 4 |
| RA | CP006881 | 2,471,279 | G→A | 5.4% | I448I (ATC→ATT) | U712_12615 ← | Putative DNA recombinase |
| RA | CP006881 | 2,581,400 | C→G | 5.1% | E763Q (GAA→CAA) | U712_13295 ← | Transcriptional regulatory protein LevR |
| RA | CP006881 | 2,694,196 | T→A | 5.7% | E185V (GAA→GTA) | U712_13885 ← | Porphobilinogen deaminase |
| RA | CP006881 | 2,751,749 | A→G | 7.0% | V237V (GTA→GTG) | U712_14185 → | Glycolate oxidase subunit glcD |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,809,879 | C→T | 7.4% | T864T (ACG→ACA) | U712_14480 ← | DNA polymerase III subunit alpha |
| RA | CP006881 | 2,863,169 | C→A | 15.0% | intergenic (‑146/+130) | U712_14770 ← / ← U712_14775 | Catabolite control protein A/Protein AroA(G) |
| RA | CP006881 | 2,883,926 | T→C | 5.4% | K78E (AAG→GAG) | U712_14880 ← | UPF0097 protein ytlP |
| RA | CP006881 | 2,922,371 | T→G | 6.0% | E176D (GAA→GAC) | U712_15050 ← | Leucyl‑tRNA synthetase |
| RA | CP006881 | 3,023,140 | T→A | 5.2% | K257I (AAA→ATA) | U712_15525 ← | Methyl‑accepting chemotaxis protein tlpB |
| RA | CP006881 | 3,045,858 | A→T | 8.0% | T142S (ACC→TCC) | U712_15645 → | putative hydrolase yugF |
| RA | CP006881 | 3,070,878 | T→G | 13.5% | K142T (AAG→ACG) | U712_15780 ← | Transcriptional regulatory protein ComA |
| RA | CP006881 | 3,084,159 | T→C | 9.1% | S134S (TCA→TCG) | U712_15870 ← | Uncharacterized protein yueC |
| RA | CP006881 | 3,126,394 | A→C | 5.9% | I22S (ATT→AGT) | U712_16045 ← | Hypothetical Protein |
| RA | CP006881 | 3,173,702 | A→T | 5.0% | D381E (GAT→GAA) | U712_16300 ← | FeS cluster assembly protein sufB |
| RA | CP006881 | 3,244,362 | A→G | 7.8% | G158G (GGA→GGG) | U712_16710 → | Putative molybdenum transport system permease protein yvgM |
| RA | CP006881 | 3,285,257:1 | +T | 100% | intergenic (‑77/+143) | U712_16905 ← / ← U712_16910 | Transcriptional repressor sdpR/Glycine betaine/carnitine/choline transport system permease protein opuCD |
| RA | CP006881 | 3,296,484 | T→G | 22.6% | R261S (AGA→AGC) | U712_16965 ← | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | CP006881 | 3,302,866 | G→T | 10.8% | S152* (TCG→TAG) | U712_16990 ← | Arabinose‑proton symporter |
| RA | CP006881 | 3,309,168 | C→A | 29.4% | intergenic (‑61/+341) | U712_17015 ← / ← U712_17020 | putative amino acid permease YvbW/putative glycosylase yvbX |
| RA | CP006881 | 3,352,937 | C→A | 6.1% | D131Y (GAT→TAT) | U712_17240 ← | Penicillin‑binding protein 4* |
| RA | CP006881 | 3,360,680 | T→A | 5.6% | intergenic (‑135/+117) | U712_17275 ← / ← U712_17280 | Uncharacterized protein yvdQ/putative FAD‑linked oxidoreductase yvdP |
| RA | CP006881 | 3,437,392 | A→C | 16.5% | D192A (GAC→GCC) | U712_17650 → | putative MFS‑type transporter yvkA |
| RA | CP006881 | 3,455,182 | T→A | 5.6% | intergenic (‑37/+10) | U712_17745 ← / ← U712_17750 | Uncharacterized protein yviE/Flagellar hook‑associated protein 3 |
| RA | CP006881 | 3,529,385 | G→A | 6.2% | V12I (GTA→ATA) | U712_18085 → | HTH‑type transcriptional regulator AlsR |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,641,937 | T→C | 5.6% | S50G (AGC→GGC) | U712_18775 ← | Nitrate reductase gamma chain |
| RA | CP006881 | 3,681,575 | G→T | 40.4% | L181I (CTC→ATC) | U712_18970 ← | Octanoyl‑[GcvH]:protein N‑octanoyltransferase |
| RA | CP006881 | 3,700,774 | T→C | 8.4% | intergenic (‑264/+1373) | U712_19060 ← / ← U712_19070 | Uncharacterized protein yweA/Spore coat polysaccharide biosynthesis protein spsJ |
| RA | CP006881 | 3,704,474 | T→C | 5.6% | T135T (ACA→ACG) | U712_19080 ← | Spore coat polysaccharide biosynthesis protein spsG |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 93.7% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,905,575 | G→C | 18.1% | G90R (GGC→CGC) | U712_20135 → | Uncharacterized protein yxcD |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.5% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.8% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.4% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,206 | C→T | 11.1% | intergenic (–/‑772) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,214 | C→T | 38.7% | intergenic (–/‑764) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,224 | T→C | 5.2% | intergenic (–/‑754) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 6.5% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 8.8% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.4% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.2% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.3% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 5.1% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 9.2% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 7.6% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 7.0% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 5.6% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 6.0% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 5.9% | intergenic (+736/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,612 | T→A | 62.6% | intergenic (+881/–) | ampR → / – | –/– |
| JC | pSIJ663_pHT315_araE_xy | 11,255 | +ACACCCGCCA | 12.8% | intergenic (+6524/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245189 | 246097 | 909 | 15 [13] | [13] 14 | [U712_01140] | [U712_01140] |
| * | * | ÷ | CP006881 | 1067454 | 1068618 | 1165 | 17 [11] | [13] 14 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149053 | 1150709 | 1657 | 17 [12] | [12] 14 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503052 | 1504647 | 1596 | 15 [13] | [12] 16 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562256 | 1566619 | 4364 | 14 [13] | [0] 15 | [U712_08060] | [U712_08060] |
| * | * | ÷ | CP006881 | 3303210–3303322 | 3304615 | 1294–1406 | 14 [12] | [0] 32 | [U712_16990]–U712_16995 | [U712_16990],U712_16995 |
| * | * | ÷ | CP006881 | 3725699 | 3728120 | 2422 | 18 [5] | [12] 14 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757688 | 3759655 | 1968 | 15 [13] | [5] 19 | [U712_19375] | [U712_19375] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2228866 = | 69 (1.110) | 22 (0.360) | 13/224 | NT | 39.6% | intergenic (‑118/‑88) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | CP006881 | 3304616 = | 0 (0.000) | intergenic (+4/+45) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT | |||||
| * | ? | CP006881 | = 2228918 | 71 (1.140) | 31 (0.010) | 17/230 | NT | 30.4% | intergenic (‑170/‑36) | U712_11195/U712_11200 | Uncharacterized protein ypzE/D‑3‑phosphoglycerate dehydrogenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | NA (NA) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 28 (0.000) | 8781 (0.990) | 200/220 | NT | 99.7% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 8 (0.000) | 11 (0.000) | 9/224 | NT | 56.7% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 9 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||