mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 5.2% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 5.2% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 11,127 | C→G | 9.4% | S77T (AGT→ACT) | yaaW ← | UPF0174 family protein |
| RA | 65,809 | G→T | 10.1% | intergenic (‑29/+46) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase |
| RA | 96,089 | C→A | 5.9% | L30M (CTG→ATG) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
| RA | 105,046 | A→C | 6.5% | Q355H (CAA→CAC) | ftsA → | ATP‑binding cell division FtsK recruitment protein |
| RA | 105,047 | G→T | 5.5% | V356L (GTG→TTG) | ftsA → | ATP‑binding cell division FtsK recruitment protein |
| RA | 114,511 | A→C | 7.2% | intergenic (+24/+11) | guaC → / ← hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 120,154 | Δ1 bp | 10.9% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158 | +A | 10.7% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 124,856 | G→T | 5.2% | A614S (GCG→TCG) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,859 | G→C | 5.2% | A615P (GCT→CCT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,861 | T→A | 5.4% | A615A (GCT→GCA) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,863 | G→C | 5.4% | G616A (GGC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 124,866 | A→C | 5.4% | D617A (GAC→GCC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 134,255 | Δ1 bp | 4.8% | intergenic (+43/‑133) | acnB → / → yacL | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase/UPF0231 family protein |
| RA | 134,260 | G→C | 4.8% | intergenic (+48/‑128) | acnB → / → yacL | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase/UPF0231 family protein |
| RA | 134,261 | A→T | 5.1% | intergenic (+49/‑127) | acnB → / → yacL | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase/UPF0231 family protein |
| RA | 134,262 | G→C | 4.7% | intergenic (+50/‑126) | acnB → / → yacL | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase/UPF0231 family protein |
| RA | 134,266 | +A | 4.6% | intergenic (+54/‑122) | acnB → / → yacL | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase/UPF0231 family protein |
| RA | 158,099 | T→G | 9.0% | D343A (GAC→GCC) | pcnB ← | poly(A) polymerase |
| RA | 163,417 | A→T | 5.2% | K438I (AAA→ATA) | hrpB → | putative ATP‑dependent helicase |
| RA | 163,418 | A→T | 5.2% | K438N (AAA→AAT) | hrpB → | putative ATP‑dependent helicase |
| RA | 163,419 | A→T | 5.4% | I439F (ATT→TTT) | hrpB → | putative ATP‑dependent helicase |
| RA | 175,144 | Δ1 bp | 15.8% | coding (38/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 175,149 | +G | 16.1% | coding (43/1422 nt) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 248,313 | A→C | 7.3% | intergenic (+179/+45) | rayT → / ← lfhA | RAYT REP element‑mobilizing transposase; TnpA(REP)/pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| RA | 252,589 | G→C | 10.3% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 13.4% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 272,330 | +G | 9.5% | intergenic (+141/‑517) | insN → / → ykfC | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/CP4‑6 prophage; conserved protein;Phage or Prophage Related |
| RA | 299,052 | C→G | 6.6% | G628A (GGC→GCC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 317,566 | G→A | 8.8% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 8.8% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 328,375 | A→C | 11.1% | I120S (ATC→AGC) | betB ← | betaine aldehyde dehydrogenase, NAD‑dependent |
| RA | 329,532 | C→T | 10.2% | L24L (CTG→TTG) | betT → | choline transporter of high affinity |
| RA | 331,524 | C→G | 7.7% | intergenic (+28/‑847) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 331,527 | C→G | 7.7% | intergenic (+31/‑844) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 331,529 | T→C | 7.7% | intergenic (+33/‑842) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 341,964 | T→G | 9.3% | T280T (ACT→ACG) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 341,967 | G→T | 9.5% | P281P (CCG→CCT) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 341,970 | A→C | 10.3% | A282A (GCA→GCC) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 341,973 | C→A | 9.4% | G283G (GGC→GGA) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 342,144 | T→C | 6.4% | I340I (ATT→ATC) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 344,228 | G→A | 6.8% | S18N (AGC→AAC) | yahL → | uncharacterized protein |
| RA | 354,741 | G→A | 6.4% | intergenic (+149/‑181) | prpE → / → codB | propionate‑‑CoA ligase/cytosine transporter |
| RA | 354,742 | C→A | 6.5% | intergenic (+150/‑180) | prpE → / → codB | propionate‑‑CoA ligase/cytosine transporter |
| RA | 355,319 | C→T | 7.5% | A133V (GCC→GTC) | codB → | cytosine transporter |
| RA | 374,937 | G→A | 6.2% | intergenic (+56/‑522) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,944 | G→T | 7.1% | intergenic (+63/‑515) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,945 | A→C | 6.9% | intergenic (+64/‑514) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,951 | T→G | 7.0% | intergenic (+70/‑508) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 374,952 | T→C | 7.2% | intergenic (+71/‑507) | mhpE → / → mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| RA | 407,248 | T→G | 7.3% | intergenic (+78/‑180) | yaiA → / → aroM | OxyR‑regulated conserved protein/AroM family protein |
| RA | 408,275 | C→T | 7.1% | G33G (GGC→GGT) | yaiE → | UPF0345 family protein |
| RA | 408,277 | A→T | 6.8% | E34V (GAA→GTA) | yaiE → | UPF0345 family protein |
| RA | 408,282 | A→G | 6.9% | T36A (ACC→GCC) | yaiE → | UPF0345 family protein |
| RA | 408,567 | A→G | 7.7% | intergenic (+106/‑42) | yaiE → / → ykiA | UPF0345 family protein/pseudogene |
| RA | 417,565 | A→C | 5.7% | T142P (ACA→CCA) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 417,570 | T→A | 7.1% | S143S (TCT→TCA) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 417,572 | A→T | 7.0% | H144L (CAC→CTC) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 417,574 | C→G | 7.2% | R145G (CGA→GGA) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 417,576 | A→T | 7.4% | R145R (CGA→CGT) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 417,578 | T→A | 7.8% | V146E (GTG→GAG) | phoB → | response regulator in two‑component regulatory system with PhoR |
| RA | 423,989 | A→C | 8.7% | N491T (AAC→ACC) | malZ → | maltodextrin glucosidase |
| RA | 423,990 | C→G | 6.8% | N491K (AAC→AAG) | malZ → | maltodextrin glucosidase |
| RA | 423,995 | C→G | 6.7% | P493R (CCG→CGG) | malZ → | maltodextrin glucosidase |
| RA | 423,996 | G→T | 6.5% | P493P (CCG→CCT) | malZ → | maltodextrin glucosidase |
| RA | 440,662 | C→A | 9.9% | S147I (AGC→ATC) | ispA ← | geranyltranstransferase |
| RA | 440,663 | T→G | 9.0% | S147R (AGC→CGC) | ispA ← | geranyltranstransferase |
| RA | 441,755 | T→G | 5.0% | R69R (CGT→CGG) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 441,757 | T→A | 5.7% | I70N (ATT→AAT) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 441,759 | C→A | 5.3% | P71T (CCG→ACG) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 465,185 | Δ1 bp | 6.2% | coding (363/696 nt) | queC ← | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| RA | 465,193 | +T | 6.2% | coding (355/696 nt) | queC ← | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| RA | 465,197 | T→G | 6.1% | E117D (GAA→GAC) | queC ← | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| RA | 481,225 | T→G | 8.0% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 494,033 | C→G | 6.0% | intergenic (+10/‑43) | dnaX → / → ybaB | DNA polymerase III/DNA elongation factor III, tau and gamma subunits/DNA‑binding protein, putative nucleoid‑associated protein |
| RA | 508,601 | C→A | 7.7% | intergenic (+42/+274) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 508,616 | A→C | 5.7% | intergenic (+57/+259) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 543,091 | G→C | 5.9% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 5.8% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,747 | T→A | 10.5% | T100T (ACA→ACT) | allE ← | S‑ureidoglycine aminohydrolase |
| RA | 543,748 | G→C | 9.8% | T100R (ACA→AGA) | allE ← | S‑ureidoglycine aminohydrolase |
| RA | 543,749 | T→A | 9.7% | T100S (ACA→TCA) | allE ← | S‑ureidoglycine aminohydrolase |
| RA | 556,018 | G→A | 7.2% | intergenic (+22/+14) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,019 | T→A | 7.2% | intergenic (+23/+13) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,020 | T→A | 7.3% | intergenic (+24/+12) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,021 | T→C | 7.2% | intergenic (+25/+11) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 587,266 | G→C | 6.8% | A239G (GCC→GGC) | ybcH ← | PRK09936 family protein |
| RA | 597,052 | T→G | 5.0% | intergenic (+79/‑79) | cusC → / → cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| RA | 644,042 | C→T | 9.5% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 672,110 | G→A | 6.6% | T26I (ACC→ATC) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,113 | T→C | 7.3% | D25G (GAT→GGT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 697,488 | T→G | 7.8% | intergenic (‑355/+25) | metT ← / ← asnB | tRNA‑Met/asparagine synthetase B |
| RA | 741,034 | A→G | 7.1% | intergenic (+109/+41) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,035 | A→C | 7.1% | intergenic (+110/+40) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,041 | G→T | 6.2% | intergenic (+116/+34) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,043 | C→G | 6.0% | intergenic (+118/+32) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,045 | A→C | 6.0% | intergenic (+120/+30) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,051 | G→T | 5.9% | intergenic (+126/+24) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 741,052 | C→T | 5.9% | intergenic (+127/+23) | phr → / ← dtpD | deoxyribodipyrimidine photolyase, FAD‑binding/dipeptide and tripeptide permease D |
| RA | 751,117 | T→C | 5.7% | P351P (CCA→CCG) | ybgQ ← | putative outer membrane protein |
| RA | 801,861 | G→C | 9.7% | intergenic (+50/‑26) | ybhH → / → ybhI | putative PrpF family isomerase/putative DASS family tricarboxylate or dicarboxylate transporter |
| RA | 805,960 | A→C | 5.5% | intergenic (+196/+38) | ybhJ → / ← ybhC | aconitase family protein/acyl‑CoA thioesterase, lipoprotein |
| RA | 836,980 | C→T | 6.8% | N210N (AAC→AAT) | ybiC → | putative dehydrogenase |
| RA | 847,213 | A→T | 8.2% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 8.5% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 870,888 | T→G | 6.5% | L493R (CTG→CGG) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 892,455 | G→C | 10.7% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 11.0% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 10.9% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 900,209 | C→A | 8.5% | D123Y (GAT→TAT) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,219 | T→A | 8.5% | K119N (AAA→AAT) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 912,583 | T→A | 7.8% | E411V (GAG→GTG) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 912,587 | C→G | 7.4% | G410R (GGC→CGC) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 912,591 | T→A | 8.4% | A408A (GCA→GCT) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 922,314 | +C | 9.5% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 939,377 | T→C | 8.2% | intergenic (+40/‑51) | rarA → / → serS | recombination intermediate processing DNA‑dependent ATPase/seryl‑tRNA synthetase |
| RA | 975,700 | G→T | 9.1% | D27Y (GAC→TAC) | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 975,701 | A→C | 7.8% | D27A (GAC→GCC) | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 985,853 | C→T | 8.2% | intergenic (‑144/+41) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,854 | A→T | 8.3% | intergenic (‑145/+40) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,855 | A→T | 8.4% | intergenic (‑146/+39) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,856 | A→G | 8.6% | intergenic (‑147/+38) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 987,561 | G→C | 7.6% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 993,068 | A→G | 4.8% | N816S (AAC→AGC) | pepN → | aminopeptidase N |
| RA | 998,450 | T→C | 4.9% | intergenic (+43/‑40) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,451 | T→A | 5.9% | intergenic (+44/‑39) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 1,067,747 | T→A | 9.1% | intergenic (‑39/‑334) | wrbA ← / → ymdF | NAD(P)H:quinone oxidoreductase/KGG family protein |
| RA | 1,140,154 | A→T | 6.1% | D41V (GAC→GTC) | flgL → | flagellar hook‑filament junction protein |
| RA | 1,153,208 | T→C | 5.7% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 5.9% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 5.9% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 6.5% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,157,629 | G→C | 8.0% | intergenic (+55/‑240) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,157,632 | A→T | 8.0% | intergenic (+58/‑237) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,157,633 | A→T | 8.0% | intergenic (+59/‑236) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,157,636 | G→C | 7.8% | intergenic (+62/‑233) | ycfH → / → ptsG | putative DNase/fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,159,335 | G→T | 8.0% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 7.1% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,214,511 | G→C | 8.9% | P322R (CCT→CGT) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,214,515 | G→T | 8.7% | Q321K (CAG→AAG) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,214,516 | G→C | 8.8% | F320L (TTC→TTG) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,214,517 | A→C | 8.4% | F320C (TTC→TGC) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,214,521 | G→C | 8.3% | R319G (CGC→GGC) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,235,687 | A→T | 7.5% | intergenic (+30/+22) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,688 | A→T | 9.1% | intergenic (+31/+21) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,261,420 | C→T | 6.6% | L152L (CTG→CTA) | prs ← | phosphoribosylpyrophosphate synthase |
| RA | 1,272,538 | A→T | 7.7% | D11V (GAT→GTT) | chaC → | cation transport regulator |
| RA | 1,272,542 | T→A | 7.7% | C12* (TGT→TGA) | chaC → | cation transport regulator |
| RA | 1,272,543 | A→C | 7.9% | K13Q (AAA→CAA) | chaC → | cation transport regulator |
| RA | 1,272,546 | A→T | 7.9% | T14S (ACG→TCG) | chaC → | cation transport regulator |
| RA | 1,273,229 | A→T | 6.4% | intergenic (+27/+17) | chaC → / ← ychN | cation transport regulator/putative sulfur relay protein |
| RA | 1,285,513 | G→A | 6.0% | P125P (CCG→CCA) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,287,420 | G→C | 7.5% | intergenic (‑92/+118) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,303,657 | T→A | 5.8% | I253I (ATT→ATA) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,303,658 | T→A | 5.9% | Y254N (TAT→AAT) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,306,787 | G→A | 9.0% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 10.0% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,311,830 | A→G | 9.6% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 8.6% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,331,839 | G→A | 9.9% | A264A (GCG→GCA) | topA → | DNA topoisomerase I, omega subunit |
| RA | 1,331,850 | T→C | 9.4% | V268A (GTG→GCG) | topA → | DNA topoisomerase I, omega subunit |
| RA | 1,355,064 | A→C | 46.6% | L136R (CTC→CGC) | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,356,852 | A→T | 15.4% | W87R (TGG→AGG) | sapA ← | antimicrobial peptide transport ABC transporter periplasmic binding protein |
| RA | 1,409,557 | C→T | 9.1% | T16M (ACG→ATG) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,409,561 | C→G | 8.5% | N17K (AAC→AAG) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,409,562 | C→G | 8.7% | L18V (CTT→GTT) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,409,565 | A→C | 8.3% | N19H (AAT→CAT) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,426,417 | T→C | 6.9% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 6.6% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 6.6% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 6.5% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,429,019 | G→T | 6.0% | intergenic (+35/‑30) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,021 | T→A | 5.9% | intergenic (+37/‑28) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,022 | T→A | 6.3% | intergenic (+38/‑27) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,024 | A→C | 5.9% | intergenic (+40/‑25) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,446,785 | T→A | 10.4% | T167S (ACA→TCA) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,446,786 | T→A | 11.5% | E166D (GAA→GAT) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,446,787 | T→A | 10.4% | E166V (GAA→GTA) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,449,799 | C→G | 6.0% | T517T (ACG→ACC) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,802 | A→G | 5.7% | A516A (GCT→GCC) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,803 | G→C | 7.1% | A516G (GCT→GGT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,804 | C→T | 5.8% | A516T (GCT→ACT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,449,807 | C→G | 6.1% | G515R (GGT→CGT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,466,438 | T→G | 9.9% | pseudogene (1047/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,493,194 | G→C | 9.1% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,500,376 | Δ1 bp | 5.8% | coding (74/981 nt) | ydcK ← | uncharacterized protein |
| RA | 1,529,218 | C→T | 100% | pseudogene (1317/2037 nt) | rhsE → | pseudogene, Rhs family |
| RA | 1,538,328 | T→C | 8.2% | M176V (ATG→GTG) | narY ← | nitrate reductase 2 (NRZ), beta subunit |
| RA | 1,560,192 | G→C | 7.0% | G246G (GGC→GGG) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,596,501 | T→A | 6.1% | pseudogene (1487/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,653,262 | Δ1 bp | 7.5% | coding (654/1020 nt) | rspB ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,681,614 | G→A | 14.3% | V213V (GTG→GTA) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| RA | 1,681,622 | T→A | 13.9% | L216Q (CTG→CAG) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| RA | 1,702,495 | C→G | 5.6% | A88G (GCC→GGC) | add → | adenosine deaminase |
| RA | 1,702,500 | C→G | 5.5% | H90D (CAC→GAC) | add → | adenosine deaminase |
| RA | 1,702,505 | C→G | 5.5% | G91G (GGC→GGG) | add → | adenosine deaminase |
| RA | 1,706,069 | T→A | 7.3% | R101R (CGT→CGA) | rsxA → | SoxR iron‑sulfur cluster reduction factor component; inner membrane protein of electron transport complex |
| RA | 1,724,279 | T→A | 7.8% | D126V (GAT→GTT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,280 | C→A | 7.6% | D126Y (GAT→TAT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,282 | G→C | 7.6% | T125S (ACC→AGC) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,285 | G→C | 7.6% | A124G (GCT→GGT) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,287 | T→G | 7.7% | K123N (AAA→AAC) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,724,288 | T→A | 7.7% | K123I (AAA→ATA) | sodC ← | superoxide dismutase, Cu, Zn, periplasmic |
| RA | 1,757,571 | A→T | 10.5% | M51L (ATG→TTG) | lpp → | murein lipoprotein |
| RA | 1,783,749 | A→G | 7.1% | H240R (CAC→CGC) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
| RA | 1,792,240 | T→A | 9.5% | intergenic (‑220/+27) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,792,242 | T→A | 12.1% | intergenic (‑222/+25) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,800,164 | C→T | 5.8% | E159K (GAA→AAA) | infC ← | translation initiation factor IF‑3 |
| RA | 1,825,936 | T→A | 9.5% | intergenic (‑311/+19) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,937 | G→T | 9.5% | intergenic (‑312/+18) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,938 | A→C | 9.4% | intergenic (‑313/+17) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,825,939 | T→A | 9.2% | intergenic (‑314/+16) | spy ← / ← astE | periplasmic ATP‑independent protein refolding chaperone, stress‑induced/succinylglutamate desuccinylase |
| RA | 1,836,904 | A→G | 7.5% | S278G (AGC→GGC) | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,836,905 | G→C | 6.7% | S278T (AGC→ACC) | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,836,906 | C→T | 6.6% | S278S (AGC→AGT) | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,851,204 | A→C | 6.3% | T115T (ACA→ACC) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,851,205 | G→C | 6.3% | G116R (GGG→CGG) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,851,206 | G→T | 6.4% | G116V (GGG→GTG) | ansA → | cytoplasmic L‑asparaginase 1 |
| RA | 1,870,253 | T→C | 12.7% | intergenic (+15/‑132) | yeaH → / → yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase |
| RA | 1,880,851 | T→A | 6.9% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 6.9% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,882,088 | G→A | 8.4% | P59P (CCG→CCA) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| RA | 1,882,090 | A→T | 8.0% | D60V (GAC→GTC) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| RA | 1,882,093 | A→T | 8.1% | D61V (GAC→GTC) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| RA | 1,882,095 | T→C | 8.6% | W62R (TGG→CGG) | dmlA → | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase |
| JC JC | 1,907,448 | IS5 (–) +4 bp | 15.9% | coding (141‑144/144 nt) | yobF ← | DUF2527 family heat‑induced protein |
| RA | 1,907,573 | T→G | 69.1% | K7Q (AAA→CAA) | yobF ← | DUF2527 family heat‑induced protein |
| RA | 1,914,846 | A→T | 8.2% | L230Q (CTG→CAG) | proQ ← | RNA chaperone, putative ProP translation regulator |
| RA | 1,932,096 | C→G | 5.9% | intergenic (+37/+19) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,948,179 | T→A | 11.3% | intergenic (‑28/+1) | yebC ← / ← nudB | UPF0082 family protein/dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,948,180 | T→A | 11.2% | *151C (TGA→TGT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,971,635 | C→T | 8.1% | A353T (GCC→ACC) | tar ← | methyl‑accepting chemotaxis protein II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,987,857 | C→T | 10.1% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 2,028,158 | G→C | 14.1% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 12.0% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 12.6% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,062,357 | T→A | 7.6% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,071,341 | T→A | 12.8% | intergenic (+130/‑198) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,071,343 | T→A | 13.0% | intergenic (+132/‑196) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,071,347 | T→A | 12.5% | intergenic (+136/‑192) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,079,004 | G→C | 6.9% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,082,113 | T→G | 6.0% | Q145H (CAA→CAC) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,133,439 | G→A | 8.0% | intergenic (‑42/+51) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,440 | C→A | 8.9% | intergenic (‑43/+50) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,446 | G→T | 8.0% | intergenic (‑49/+44) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,447 | A→C | 8.3% | intergenic (‑50/+43) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,453 | T→G | 8.2% | intergenic (‑56/+37) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,454 | T→C | 8.6% | intergenic (‑57/+36) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,824 | C→T | 6.3% | G610D (GGT→GAT) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,831 | G→C | 6.0% | P608A (CCG→GCG) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,133,833 | A→G | 6.2% | I607T (ATC→ACC) | wzc ← | colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,204,468 | C→G | 5.8% | intergenic (+179/‑128) | yehK → / → yehL | uncharacterized protein/putative hexameric AAA+ MoxR family ATPase |
| RA | 2,208,932 | A→G | 7.0% | K322K (AAA→AAG) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,211,703 | C→T | 5.9% | intergenic (+17/+23) | yehR → / ← yehS | lipoprotein, DUF1307 family/DUF1456 family protein |
| RA | 2,211,706 | T→A | 4.8% | intergenic (+20/+20) | yehR → / ← yehS | lipoprotein, DUF1307 family/DUF1456 family protein |
| RA | 2,211,707 | A→G | 4.9% | intergenic (+21/+19) | yehR → / ← yehS | lipoprotein, DUF1307 family/DUF1456 family protein |
| RA | 2,211,709 | A→G | 5.4% | intergenic (+23/+17) | yehR → / ← yehS | lipoprotein, DUF1307 family/DUF1456 family protein |
| RA | 2,237,434 | A→G | 6.8% | L107P (CTG→CCG) | mglC ← | methyl‑galactoside transporter subunit |
| RA | 2,248,737 | T→A | 8.3% | *294Y (TAA→TAT) | yeiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,271,829 | A→G | 4.5% | A368A (GCA→GCG) | rtn → | resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,375,483 | A→T | 4.9% | L160L (CTT→CTA) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 4.9% | L160H (CTT→CAT) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,392,498 | C→G | 6.4% | G182R (GGC→CGC) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
| RA | 2,392,500 | C→G | 6.7% | S181T (AGT→ACT) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
| RA | 2,392,502 | C→G | 6.8% | A180A (GCG→GCC) | nuoM ← | NADH:ubiquinone oxidoreductase, membrane subunit M |
| RA | 2,400,350 | A→T | 6.9% | P402P (CCT→CCA) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,412,640 | G→T | 10.5% | intergenic (‑46/+37) | yfbU ← / ← yfbV | UPF0304 family protein/UPF0208 family inner membrane protein |
| RA | 2,412,911 | G→T | 11.6% | A74A (GCC→GCA) | yfbV ← | UPF0208 family inner membrane protein |
| RA | 2,412,914 | A→C | 11.6% | V73V (GTT→GTG) | yfbV ← | UPF0208 family inner membrane protein |
| RA | 2,414,657 | C→T | 7.5% | S396S (AGC→AGT) | ackA → | acetate kinase A and propionate kinase 2 |
| RA | 2,419,544 | A→T | 7.9% | L82Q (CTG→CAG) | yfcE ← | phosphodiesterase activity on bis‑pNPP |
| RA | 2,432,990 | G→C | 6.3% | intergenic (‑48/+22) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,995 | C→T | 6.2% | intergenic (‑53/+17) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,473,466 | T→A | 4.6% | pseudogene (120/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,473,468 | T→C | 4.7% | pseudogene (118/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,473,473 | G→C | 4.6% | pseudogene (113/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,473,474 | G→C | 4.6% | pseudogene (112/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,473,481 | T→A | 4.6% | pseudogene (105/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,503,155 | T→G | 5.6% | D444A (GAC→GCC) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,504,200 | T→C | 6.5% | T96A (ACG→GCG) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,507,106 | A→G | 7.3% | G263G (GGT→GGC) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,109 | T→G | 7.8% | A262A (GCA→GCC) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,110 | G→C | 6.7% | A262G (GCA→GGA) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,111 | C→A | 5.8% | A262S (GCA→TCA) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,114 | C→T | 8.5% | A261T (GCC→ACC) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,521,344 | C→T | 8.5% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 7.5% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 8.6% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,523,798 | T→G | 6.1% | D63A (GAC→GCC) | xapB ← | xanthosine transporter |
| RA | 2,549,601 | T→G | 8.1% | intergenic (+195/+45) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,608 | T→C | 8.1% | intergenic (+202/+38) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,609 | G→A | 8.0% | intergenic (+203/+37) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,616 | C→A | 7.5% | intergenic (+210/+30) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,568,147 | C→A | 11.7% | intergenic (‑40/+177) | eutH ← / ← eutG | ethanolamine transporter/ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase |
| RA | 2,597,700 | A→C | 6.3% | intergenic (‑82/+131) | purC ← / ← bamC | phosphoribosylaminoimidazole‑succinocarboxamide synthetase/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,597,706 | T→G | 6.0% | intergenic (‑88/+125) | purC ← / ← bamC | phosphoribosylaminoimidazole‑succinocarboxamide synthetase/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,597,707 | T→C | 6.4% | intergenic (‑89/+124) | purC ← / ← bamC | phosphoribosylaminoimidazole‑succinocarboxamide synthetase/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,648,452 | C→A | 9.3% | G1279V (GGT→GTT) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,455 | C→G | 8.3% | R1278P (CGG→CCG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,458 | T→G | 8.1% | N1277T (AAC→ACC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,648,463 | +A | 7.9% | coding (3825/4962 nt) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,653,367 | G→A | 7.5% | intergenic (+28/+790) | sseA → / ← sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| RA | 2,679,430 | Δ1 bp | 8.8% | intergenic (‑63/+34) | yphF ← / ← yphG | putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein |
| RA | 2,679,434 | +C | 8.8% | intergenic (‑67/+30) | yphF ← / ← yphG | putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein |
| RA | 2,681,971 | G→A | 6.4% | Q259* (CAG→TAG) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,691,169 | A→T | 9.4% | intergenic (‑71/+487) | glrK ← / ← purL | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR/phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,691,171 | T→A | 9.4% | intergenic (‑73/+485) | glrK ← / ← purL | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR/phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,691,173 | A→T | 8.7% | intergenic (‑75/+483) | glrK ← / ← purL | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR/phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,704,880 | A→C | 5.6% | Y144D (TAC→GAC) | lepB ← | leader peptidase (signal peptidase I) |
| RA | 2,707,320 | A→T | 7.8% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 7.8% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,739,149 | A→C | 7.4% | I307M (ATT→ATG) | tyrA ← | fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,750,073 | G→T | 8.3% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 7.8% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 8.1% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 7.7% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,758,920 | C→T | 7.0% | intergenic (+64/‑65) | alpA → / → yfjI | CP4‑57 prophage; DNA‑binding transcriptional activator/CP4‑57 prophage; uncharacterized protein |
| RA | 2,767,667 | T→G | 6.1% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 6.1% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,768,609 | T→C | 7.3% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 9.8% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 7.6% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 7.8% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,776,138 | G→T | 6.3% | G74C (GGC→TGC) | yfjX → | CP4‑57 prophage; putative antirestriction protein |
| RA | 2,801,056 | A→T | 7.9% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,838,222 | A→T | 7.5% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,851,049 | G→T | 14.3% | D17Y (GAT→TAT) | hypB → | GTP hydrolase involved in nickel liganding into hydrogenases |
| RA | 2,851,053 | A→T | 14.3% | E18V (GAA→GTA) | hypB → | GTP hydrolase involved in nickel liganding into hydrogenases |
| RA | 2,851,054 | A→T | 12.8% | E18D (GAA→GAT) | hypB → | GTP hydrolase involved in nickel liganding into hydrogenases |
| RA | 2,851,058 | A→C | 11.6% | N20H (AAC→CAC) | hypB → | GTP hydrolase involved in nickel liganding into hydrogenases |
| RA | 2,912,381 | G→A | 18.6% | P424L (CCG→CTG) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,933,395 | G→T | 6.0% | C98* (TGC→TGA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,398 | A→T | 6.2% | H97Q (CAT→CAA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,933,401 | A→C | 6.2% | V96V (GTT→GTG) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,993,889 | T→A | 5.9% | intergenic (+33/‑50) | ygeI → / → pbl | uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family |
| RA | 3,032,403 | T→C | 7.2% | M346T (ATG→ACG) | uacT → | uric acid permease |
| RA | 3,032,404 | G→C | 7.1% | M346I (ATG→ATC) | uacT → | uric acid permease |
| RA | 3,032,405 | G→A | 7.2% | V347M (GTG→ATG) | uacT → | uric acid permease |
| RA | 3,058,651 | G→A | 6.8% | intergenic (‑241/+15) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| RA | 3,058,652 | G→C | 6.8% | intergenic (‑242/+14) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| RA | 3,058,653 | T→C | 6.8% | intergenic (‑243/+13) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| RA | 3,066,299 | +G | 7.5% | coding (875/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,308 | A→T | 8.0% | I289N (ATT→AAT) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,319 | Δ1 bp | 6.2% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,326 | G→A | 5.1% | A283V (GCC→GTC) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,081,338 | G→C | 10.6% | H100D (CAC→GAC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,169,260 | Δ1 bp | 10.4% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265 | +T | 8.5% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,172,436 | T→G | 6.5% | intergenic (‑225/‑94) | ygiZ ← / → mdaB | inner membrane protein/NADPH quinone reductase |
| RA | 3,172,439 | A→T | 8.1% | intergenic (‑228/‑91) | ygiZ ← / → mdaB | inner membrane protein/NADPH quinone reductase |
| RA | 3,172,442 | C→A | 8.8% | intergenic (‑231/‑88) | ygiZ ← / → mdaB | inner membrane protein/NADPH quinone reductase |
| RA | 3,179,612 | T→C | 7.6% | intergenic (+16/‑132) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,179,613 | T→G | 8.1% | intergenic (+17/‑131) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,179,614 | C→A | 7.7% | intergenic (+18/‑130) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,179,615 | G→A | 7.6% | intergenic (+19/‑129) | tolC → / → ygiB | transport channel/DUF1190 family protein |
| RA | 3,181,603 | C→T | 8.9% | intergenic (+22/+16) | ygiC → / ← ygiD | ATP‑Grasp family ATPase/4,5‑ DOPA‑extradiol‑dioxygenase |
| RA | 3,215,694 | G→T | 6.9% | intergenic (+21/+33) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,215,695 | A→T | 6.5% | intergenic (+22/+32) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,215,696 | A→T | 6.5% | intergenic (+23/+31) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,215,697 | A→C | 6.7% | intergenic (+24/+30) | ileX → / ← yqjH | tRNA‑Ile/putative siderophore interacting protein |
| RA | 3,246,561 | T→G | 6.4% | intergenic (+39/‑91) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,247,836 | Δ1 bp | 6.4% | coding (64/663 nt) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| RA | 3,247,843 | +G | 6.5% | coding (71/663 nt) | yqjA → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| RA | 3,263,500 | G→A | 9.1% | P54L (CCG→CTG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,501 | G→C | 9.4% | P54A (CCG→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,502 | T→C | 8.9% | A53A (GCA→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,269,969 | A→C | 6.7% | intergenic (+367/+656) | yhaC → / ← garK | pentapetide repeats‑related protein/glycerate kinase I |
| RA | 3,279,053 | A→G | 6.4% | E47G (GAA→GGA) | kbaZ → | tagatose 6‑phosphate aldolase 1, kbaZ subunit |
| RA | 3,300,226 | Δ1 bp | 6.6% | coding (261/303 nt) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,300,230 | T→C | 7.8% | L89L (TTA→CTA) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,300,232 | A→T | 7.0% | L89F (TTA→TTT) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,300,234 | G→A | 6.5% | S90N (AGC→AAC) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,300,237 | +C | 6.4% | coding (272/303 nt) | yhbQ → | GIY‑YIG nuclease superfamily protein |
| RA | 3,324,955 | A→G | 5.4% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 5.3% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,333,969 | T→A | 6.6% | V87E (GTG→GAG) | ispB → | octaprenyl diphosphate synthase |
| RA | 3,352,937 | G→A | 9.3% | A30V (GCC→GTC) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,361,054 | A→G | 6.8% | intergenic (+438/‑122) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,387,553 | T→A | 7.8% | R212R (CGA→CGT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,395,586 | T→C | 4.9% | K225E (AAG→GAG) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,395,592 | C→G | 4.9% | D223H (GAC→CAC) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,395,597 | T→A | 5.1% | D221V (GAC→GTC) | yhdP ← | DUF3971‑AsmA2 domains protein |
| RA | 3,396,961 | C→A | 8.8% | A279S (GCG→TCG) | rng ← | ribonuclease G |
| RA | 3,396,962 | T→G | 8.8% | R278R (CGA→CGC) | rng ← | ribonuclease G |
| RA | 3,476,084 | G→A | 9.2% | N119N (AAC→AAT) | yheO ← | putative PAS domain‑containing DNA‑binding transcriptional regulator |
| RA | 3,504,816 | T→G | 6.9% | intergenic (+33/+119) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,817 | C→G | 7.8% | intergenic (+34/+118) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,504,818 | C→A | 6.9% | intergenic (+35/+117) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,533,038 | G→C | 4.9% | R74P (CGT→CCT) | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,560,455 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,570,719 | C→G | 5.9% | V201L (GTG→CTG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,724 | Δ1 bp | 6.0% | coding (596/1974 nt) | glgX ← | glycogen debranching enzyme |
| RA | 3,610,537 | A→C | 11.4% | P399P (CCT→CCG) | yhhS ← | putative arabinose efflux transporter |
| RA | 3,654,784 | C→T | 6.2% | D34D (GAC→GAT) | dctR → | Putative LuxR family repressor for dicarboxylate transport |
| RA | 3,657,599 | T→A | 10.5% | intergenic (+32/‑767) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,601 | G→C | 9.4% | intergenic (+34/‑765) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,657,603 | T→A | 9.4% | intergenic (+36/‑763) | hdeD → / → gadE | acid‑resistance membrane protein/gad regulon transcriptional activator |
| RA | 3,702,835 | G→A | 7.6% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 7.4% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 8.6% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,754,704 | A→T | 6.0% | intergenic (‑276/+269) | yiaW ← / ← aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| RA | 3,770,646 | G→T | 6.2% | P245Q (CCG→CAG) | yibH ← | putative membrane fusion protein (MFP) component of efflux pump |
| RA | 3,818,115 | C→T | 6.1% | A119V (GCT→GTT) | dinD → | DNA damage‑inducible protein |
| RA | 3,831,757 | C→T | 7.6% | A434V (GCC→GTC) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,761 | C→G | 7.6% | A435A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,764 | C→G | 7.8% | A436A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,768 | A→G | 8.3% | T438A (ACA→GCA) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,832,797 | T→G | 6.5% | N581H (AAC→CAC) | yicI ← | putative alpha‑glucosidase |
| RA | 3,832,800 | C→A | 7.1% | A580S (GCG→TCG) | yicI ← | putative alpha‑glucosidase |
| RA | 3,845,750 | T→C | 5.4% | intergenic (+20/+26) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,862,811 | C→T | 7.0% | pseudogene (793/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| RA | 3,880,374 | A→T | 5.6% | L283Q (CTG→CAG) | recF ← | gap repair protein |
| RA | 3,880,375 | G→T | 5.6% | L283M (CTG→ATG) | recF ← | gap repair protein |
| RA | 3,880,380 | A→C | 5.7% | L281* (TTA→TGA) | recF ← | gap repair protein |
| RA | 3,880,381 | A→T | 5.7% | L281I (TTA→ATA) | recF ← | gap repair protein |
| RA | 3,906,826 | T→C | 7.8% | intergenic (‑259/+27) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,828 | A→T | 7.7% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,830 | G→A | 7.7% | intergenic (‑263/+23) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,911,819 | T→G | 8.4% | intergenic (‑294/+20) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,938,255 | T→A | 8.3% | L10Q (CTG→CAG) | rbsR → | transcriptional repressor of ribose metabolism |
| RA | 3,941,891 | T→A | 6.9% | noncoding (84/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,941,892 | T→A | 7.3% | noncoding (85/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,950,469 | T→G | 7.9% | intergenic (+49/‑38) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,956,973 | +A | 7.1% | coding (848/894 nt) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 3,956,978 | Δ1 bp | 7.1% | coding (843/894 nt) | ilvY ← | transcriptional activator of ilvC; autorepressor |
| RA | 4,009,118 | T→G | 6.4% | intergenic (‑59/‑52) | rhtB ← / → pldB | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump/lysophospholipase L2 |
| RA | 4,055,078 | C→A | 8.1% | K67N (AAG→AAT) | glnG ← | fused DNA‑binding response regulator in two‑component regulatory system with GlnL: response regulator/sigma54 interaction protein |
| RA | 4,062,811 | C→A | 9.9% | L189M (CTG→ATG) | yihN → | MFS transporter family protein |
| RA | 4,062,813 | G→T | 10.1% | L189L (CTG→CTT) | yihN → | MFS transporter family protein |
| RA | 4,062,814 | A→C | 10.7% | N190H (AAT→CAT) | yihN → | MFS transporter family protein |
| RA | 4,062,816 | T→G | 10.6% | N190K (AAT→AAG) | yihN → | MFS transporter family protein |
| RA | 4,101,596 | A→G | 6.2% | intergenic (+166/‑94) | sodA → / → kdgT | superoxide dismutase, Mn/2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 4,111,389 | A→G | 8.4% | I40T (ATC→ACC) | tpiA ← | triosephosphate isomerase |
| RA | 4,111,396 | C→T | 6.7% | V38I (GTT→ATT) | tpiA ← | triosephosphate isomerase |
| RA | 4,114,537 | G→T | 7.6% | intergenic (‑65/+32) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,539 | A→G | 8.1% | intergenic (‑67/+30) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,177,171 | T→A | 14.0% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 14.0% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,187,507 | A→C | 100% | N720H (AAC→CAC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,235,579 | G→A | 7.5% | intergenic (+172/‑327) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,581 | T→A | 7.5% | intergenic (+174/‑325) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,583 | T→C | 7.6% | intergenic (+176/‑323) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,271,838 | C→A | 8.5% | G678G (GGG→GGT) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| RA | 4,296,190 | A→G | 29.0% | intergenic (+396/+246) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,191 | A→C | 27.8% | intergenic (+397/+245) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,268 | T→C | 29.7% | intergenic (+474/+168) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,312,309 | G→A | 11.4% | P228L (CCG→CTG) | alsR ← | d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,315,437 | A→T | 7.0% | F34L (TTT→TTA) | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,438 | A→T | 7.1% | F34Y (TTT→TAT) | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,439 | A→T | 7.0% | F34I (TTT→ATT) | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,323,258 | A→C | 6.5% | intergenic (‑28/+78) | phnE ← / ← phnD | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily/phosphonate ABC transporter periplasmic binding protein |
| RA | 4,335,654 | T→A | 9.8% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 10.4% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,353,170 | G→A | 7.6% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 7.6% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 7.7% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 6.1% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,366,854 | T→G | 12.2% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 12.9% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,367,700 | G→T | 5.7% | L210M (CTG→ATG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,701 | G→C | 5.7% | I209M (ATC→ATG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,702 | A→C | 5.7% | I209S (ATC→AGC) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,377,792 | A→T | 6.3% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,390,401 | C→A | 8.8% | intergenic (‑41/+56) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,403 | A→G | 9.9% | intergenic (‑43/+54) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,404 | C→T | 9.4% | intergenic (‑44/+53) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,406 | T→G | 9.5% | intergenic (‑46/+51) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,410,026 | G→A | 7.4% | intergenic (+20/‑107) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,037 | T→C | 7.3% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,414,249 | G→C | 6.5% | intergenic (+58/‑26) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,424,465 | G→T | 9.2% | intergenic (+79/+51) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,424,468 | A→C | 9.6% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,439,010 | T→G | 8.0% | K85Q (AAA→CAA) | ytfJ ← | putative transcriptional regulator |
| RA | 4,439,013 | T→G | 6.7% | I84L (ATT→CTT) | ytfJ ← | putative transcriptional regulator |
| RA | 4,464,327 | A→T | 8.0% | I128N (ATC→AAC) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,464,332 | A→T | 5.9% | F126L (TTT→TTA) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,470,951 | A→C | 8.2% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 8.2% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 8.8% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,479,012 | A→T | 9.5% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 10.6% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 10.1% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,491,164 | C→A | 6.9% | intergenic (‑25/+42) | idnR ← / ← idnT | transcriptional repressor, 5‑gluconate‑binding/L‑idonate and D‑gluconate transporter |
| RA | 4,497,953 | A→T | 5.3% | intergenic (+13/‑319) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,497,954 | A→T | 5.3% | intergenic (+14/‑318) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,514,335 | A→T | 7.6% | intergenic (‑27/+18) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,514,336 | A→T | 7.6% | intergenic (‑28/+17) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,328 | T→G | 11.0% | E450D (GAA→GAC) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,329 | T→A | 11.0% | E450V (GAA→GTA) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,330 | C→A | 11.3% | E450* (GAA→TAA) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,523,472 | A→C | 5.5% | F208C (TTC→TGC) | yjhG ← | putative dehydratase |
| RA | 4,537,030 | A→G | 7.6% | Y189H (TAC→CAC) | nanS ← | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 127761 | 59 (1.030) | 4 (0.070) | 4/566 | NT | 5.9% | intergenic (+174/‑151) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | = 127874 | 71 (1.270) | intergenic (+287/‑38) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 3 (0.050) | 3/566 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 331515 = | 51 (0.890) | 2 (0.040) | 4/566 | NT | 4.0% | intergenic (+19/‑856) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| ? | NC_000913 | 331537 = | 45 (0.800) | intergenic (+41/‑834) | betT/yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase | |||||
| * | ? | NC_000913 | = 401994 | 42 (0.730) | 4 (0.070) | 4/570 | NT | 8.8% | coding (248/1416 nt) | phoA | bacterial alkaline phosphatase |
| ? | NC_000913 | = 402017 | 42 (0.740) | coding (271/1416 nt) | phoA | bacterial alkaline phosphatase | |||||
| * | ? | NC_000913 | = 511731 | 37 (0.640) | 4 (0.070) | 4/566 | NT | 10.1% | coding (91/933 nt) | glsA | glutaminase 1 |
| ? | NC_000913 | = 511741 | 35 (0.620) | coding (101/933 nt) | glsA | glutaminase 1 | |||||
| * | ? | NC_000913 | 534210 = | 43 (0.750) | 3 (0.050) | 3/572 | NT | 7.0% | coding (295/1782 nt) | gcl | glyoxylate carboligase |
| ? | NC_000913 | 534347 = | 37 (0.650) | coding (432/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | NC_000913 | 596981 = | 67 (1.170) | 3 (0.050) | 3/568 | NT | 4.9% | intergenic (+8/‑150) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| ? | NC_000913 | 597106 = | 52 (0.920) | intergenic (+133/‑25) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein | |||||
| * | ? | NC_000913 | 639508 = | 62 (1.080) | 5 (0.090) | 4/566 | NT | 6.8% | coding (564/564 nt) | ahpC | alkyl hydroperoxide reductase, C22 subunit |
| ? | NC_000913 | 639635 = | 76 (1.350) | intergenic (+127/‑118) | ahpC/ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding | |||||
| * | ? | NC_000913 | 662343 = | 69 (1.200) | 6 (0.110) | 5/564 | NT | 8.4% | intergenic (‑65/+36) | lipB/ybeD | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein |
| ? | NC_000913 | 662368 = | 63 (1.130) | intergenic (‑90/+11) | lipB/ybeD | octanoyltransferase; octanoyl‑[ACP]:protein N‑octanoyltransferase/UPF0250 family protein | |||||
| * | ? | NC_000913 | 703251 = | 73 (1.270) | 4 (0.070) | 4/558 | NT | 6.7% | coding (361/801 nt) | nagB | glucosamine‑6‑phosphate deaminase |
| ? | NC_000913 | 703492 = | 42 (0.760) | coding (120/801 nt) | nagB | glucosamine‑6‑phosphate deaminase | |||||
| * | ? | NC_000913 | 730181 = | 66 (1.150) | 3 (0.050) | 3/566 | NT | 4.5% | coding (599/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619954 = | NA (NA) | coding (763/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 793868 | 57 (0.990) | 4 (0.070) | 4/564 | NT | 6.6% | coding (777/789 nt) | modE | transcriptional repressor for the molybdenum transport operon modABC |
| ? | NC_000913 | = 793876 | 58 (1.040) | coding (769/789 nt) | modE | transcriptional repressor for the molybdenum transport operon modABC | |||||
| * | ? | NC_000913 | 947028 = | 54 (0.940) | 3 (0.050) | 3/552 | NT | 5.9% | intergenic (+9/‑201) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter |
| ? | NC_000913 | 947064 = | 45 (0.820) | intergenic (+45/‑165) | ycaD/ycaM | putative MFS transporter, inner membrane protein/putative transporter | |||||
| * | ? | NC_000913 | = 1009742 | 60 (1.040) | 3 (0.050) | 3/566 | NT | 4.8% | coding (1899/2109 nt) | rlmL | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent |
| ? | NC_000913 | = 1009751 | 61 (1.090) | coding (1908/2109 nt) | rlmL | 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent | |||||
| * | ? | NC_000913 | = 1040546 | NA (NA) | 3 (0.050) | 3/560 | NT | NA | noncoding (4/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1040578 | NA (NA) | noncoding (36/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 1067740 = | 59 (1.030) | 2 (0.040) | 3/566 | NT | 3.4% | intergenic (‑32/‑341) | wrbA/ymdF | NAD(P)H:quinone oxidoreductase/KGG family protein |
| ? | NC_000913 | 1067755 = | 56 (1.000) | intergenic (‑47/‑326) | wrbA/ymdF | NAD(P)H:quinone oxidoreductase/KGG family protein | |||||
| * | ? | NC_000913 | 1070213 = | 67 (1.170) | 3 (0.050) | 3/568 | NT | 4.3% | coding (142/495 nt) | rutF | flavin:NADH reductase |
| ? | NC_000913 | 1070309 = | 69 (1.230) | coding (46/495 nt) | rutF | flavin:NADH reductase | |||||
| * | ? | NC_000913 | 1096961 = | 42 (0.730) | 12 (0.290) | 6/420 | NT | 24.6% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 43 (1.030) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1207790 = | 31 (0.540) | 38 (0.700) | 34/548 | NT | 64.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 12 (0.220) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 32 (0.560) | 37 (0.680) | 32/548 | NT | 63.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 12 (0.220) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1293124 = | 38 (0.660) | 11 (0.190) | 10/580 | NT | 22.4% | intergenic (‑202/‑403) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1826219 = | 54 (0.940) | 3 (0.050) | 3/568 | NT | 5.1% | coding (705/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | 1826334 = | 59 (1.050) | coding (590/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 2234894 = | 50 (0.870) | 4 (0.070) | 3/580 | NT | 7.4% | coding (862/1239 nt) | preT | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit N |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 2423437 = | 57 (0.990) | 5 (0.090) | 4/564 | NT | 8.0% | coding (103/891 nt) | yfcI | transposase_31 family protein |
| ? | NC_000913 | 2423471 = | 60 (1.070) | coding (69/891 nt) | yfcI | transposase_31 family protein | |||||
| * | ? | NC_000913 | = 3136627 | 58 (1.010) | 5 (0.090) | 6/550 | NT | 7.9% | intergenic (‑256/+36) | pitB/gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | NC_000913 | = 3136632 | 61 (1.120) | intergenic (‑261/+31) | pitB/gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 5 (0.090) | 4/558 | NT | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | 3919776 = | 63 (1.100) | 4 (0.070) | 4/580 | NT | 6.2% | coding (82/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit |
| ? | NC_000913 | 3919799 = | 59 (1.030) | coding (59/1542 nt) | atpA | F1 sector of membrane‑bound ATP synthase, alpha subunit | |||||
| * | ? | NC_000913 | = 4010544 | 47 (0.820) | 3 (0.050) | 3/574 | NT | 5.2% | coding (345/801 nt) | yigL | pyridoxal phosphate phosphatase |
| ? | NC_000913 | = 4010710 | 63 (1.110) | coding (511/801 nt) | yigL | pyridoxal phosphate phosphatase | |||||
| * | ? | NC_000913 | 4094338 = | NA (NA) | 3 (0.060) +23 bp |
3/534 | NT | NA | noncoding (23/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | = 4094682 | NA (NA) | noncoding (367/402 nt) | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
| * | ? | NC_000913 | 4262736 = | 51 (0.890) | 4 (0.070) | 5/568 | NT | 7.6% | intergenic (+30/‑104) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G |
| ? | NC_000913 | 4262762 = | 48 (0.850) | intergenic (+56/‑78) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G | |||||
| * | ? | NC_000913 | = 4316619 | 74 (1.290) | 3 (0.050) | 3/580 | NT | 4.0% | coding (600/1137 nt) | phnM | ribophosphonate triphosphate hydrolase |
| ? | NC_000913 | = 4316701 | 71 (1.230) | coding (518/1137 nt) | phnM | ribophosphonate triphosphate hydrolase | |||||
| * | ? | NC_000913 | 4426579 = | 71 (1.230) | 3 (0.050) | 4/554 | NT | 4.3% | intergenic (+22/+49) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| ? | NC_000913 | 4426606 = | 65 (1.180) | intergenic (+49/+22) | rplI/yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein | |||||
| * | ? | NC_000913 | = 4510614 | 59 (1.030) | 3 (0.050) | 3/568 | NT | 4.7% | intergenic (+481/+76) | yjhV/fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase |
| ? | NC_000913 | = 4510621 | 63 (1.120) | intergenic (+488/+69) | yjhV/fecE | pseudogene, KpLE2 phage‑like element/ferric citrate ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 4583124 | 53 (0.920) | 4 (0.070) | 4/566 | NT | 6.7% | intergenic (‑76/+125) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583237 | 60 (1.070) | intergenic (‑189/+12) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||