mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 70,638 | A→G | 6.9% | H34R (CAT→CGT) | spoIIE → | SpoIIAA‑phosphate serine phosphatase |
| RA | BS168_reference_genome | 78,236 | A→T | 100% | N418I (AAT→ATT) | ftsH → | ATP‑dependent cytoplasmic membrane protease |
| RA | BS168_reference_genome | 95,851 | T→A | 29.4% | intergenic (+5/‑10) | trnJ‑Gly → / → trnJ‑Leu2 | tRNA‑Gly/tRNA‑Leu |
| RA | BS168_reference_genome | 95,856 | T→A | 26.1% | intergenic (+10/‑5) | trnJ‑Gly → / → trnJ‑Leu2 | tRNA‑Gly/tRNA‑Leu |
| RA | BS168_reference_genome | 143,659 | C→T | 100% | S100F (TCT→TTT) | rpsE → | ribosomal protein S5 |
| RA | BS168_reference_genome | 165,749 | Δ1 bp | 100% | intergenic (+42/‑5) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,751 | Δ1 bp | 100% | intergenic (+44/‑3) | rrnI‑5S → / → trnI‑Asn | ribosomal RNA‑5S/tRNA‑Asn |
| RA | BS168_reference_genome | 165,825:1 | +C | 100% | noncoding (72/72 nt) | trnI‑Asn → | tRNA‑Asn |
| RA | BS168_reference_genome | 166,037:1 | +T | 100% | intergenic (+4/‑27) | trnI‑Gly → / → trnI‑Arg | tRNA‑Gly/tRNA‑Arg |
| RA | BS168_reference_genome | 166,344 | Δ1 bp | 100% | intergenic (+16/‑156) | trnI‑Ala → / → rrnH‑16S | tRNA‑Ala/ribosomal RNA‑16S |
| RA | BS168_reference_genome | 238,265 | G→T | 25.4% | pseudogene (184/285 nt) | ybfEc ← | conserved protein of unknown function (C‑terminal end) |
| RA | BS168_reference_genome | 329,108 | A→T | 6.0% | A497A (GCA→GCT) | amyE → | alpha‑amylase |
| RA | BS168_reference_genome | 357,936 | G→T | 5.2% | V82V (GTC→GTA) | nasD ← | assimilatory nitrite reductase subunit |
| RA | BS168_reference_genome | 376,018 | Δ1 bp | 100% | intergenic (‑220/‑14) | hxlA ← / → hxlR | 3‑hexulose‑6‑phosphate synthase (HPS)/positive regulator of hxlAB expression (formaldehyde sensing) |
| RA | BS168_reference_genome | 389,045 | T→G | 27.3% | A434A (GCT→GCG) | srfAB → | surfactin synthetase |
| RA | BS168_reference_genome | 403,985 | T→G | 13.3% | F257V (TTC→GTC) | srfT → | surfactin exporter |
| RA | BS168_reference_genome | 408,486 | A→C | 15.6% | R134R (CGT→CGG) | yczE ← | integral inner membrane protein regulating antibiotic production |
| RA | BS168_reference_genome | 427,729 | T→A | 7.3% | N161K (AAT→AAA) | yclK → | two‑component sensor histidine kinase [YclJ] |
| RA | BS168_reference_genome | 427,920 | C→G | 16.5% | S225C (TCT→TGT) | yclK → | two‑component sensor histidine kinase [YclJ] |
| RA | BS168_reference_genome | 557,865:1 | +T | 100% | intergenic (+416/‑8) | yddT → / → ydzN | putative exported phage protein/hypothetical protein |
| RA | BS168_reference_genome | 616,094 | C→T | 7.1% | T75M (ACG→ATG) | ydhC → | putative transcriptional regulator (GntR family) |
| RA | BS168_reference_genome | 830,657 | T→G | 16.8% | S426A (TCA→GCA) | maeS → | malate (2‑oxoglutarate) transporter |
| RA | BS168_reference_genome | 849,281 | T→C | 6.6% | L298L (TTA→TTG) | yfkQ ← | putative spore germination protein |
| RA | BS168_reference_genome | 858,185 | T→A | 6.4% | T440S (ACA→TCA) | yfkN ← | exported 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase, 2' (or 3') nucleotidase and 5' nucleotidase |
| RA | BS168_reference_genome | 892,022 | A→T | 100% | N196I (AAT→ATT) | malR → | transcriptional activator of the Mal operon |
| RA | BS168_reference_genome | 921,462 | G→C | 5.7% | G330A (GGG→GCG) | sxzZ → | xenosiderophore schizokinen (dihydroxamate) transporter (permease) |
| RA | BS168_reference_genome | 961,062 | Δ1 bp | 100% | intergenic (‑76/‑332) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 961,067 | T→A | 100% | intergenic (‑81/‑327) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 961,069 | G→T | 100% | intergenic (‑83/‑325) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 965,051 | T→G | 14.8% | L342R (CTT→CGT) | ssuD → | FMNH2‑dependent aliphatic sulfonate monooxygenase |
| RA | BS168_reference_genome | 1,023,150 | C→A | 34.0% | intergenic (+50/‑200) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,023,175 | C→A | 26.2% | intergenic (+75/‑175) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,023,191 | C→A | 26.9% | intergenic (+91/‑159) | yhdF → / → bcaP | putative NAD(P)‑dependent dehydrogenase/branched‑chain amino acid transporter or methylthioribose‑degradation metabolite exporter |
| RA | BS168_reference_genome | 1,067,512 | C→G | 6.4% | S479C (TCT→TGT) | sbcE → | ATPase involved in DNA double strand break repair and recombination |
| RA | BS168_reference_genome | 1,073,401 | A→T | 100% | L106* (TTG→TAG) | scoC ← | transcriptional regulator of extracellular protease production, sporulation and bacilysin production (MarR family) |
| RA | BS168_reference_genome | 1,080,047 | C→T | 16.6% | A209V (GCC→GTC) | ecsC → | putative hydrolase |
| RA | BS168_reference_genome | 1,142,219 | T→G | 17.5% | F805V (TTT→GTT) | addA → | ATP‑dependent deoxyribonuclease (subunit A) |
| RA | BS168_reference_genome | 1,248,775 | A→T | 100% | K37N (AAA→AAT) | cotO → | spore outer coat protein |
| RA | BS168_reference_genome | 1,302,432 | G→A | 6.0% | R165H (CGC→CAC) | exuM → | putative Na+:altronate/mannonate symporter |
| RA | BS168_reference_genome | 1,317,152:1 | +GT | 100% | intergenic (+23/+5) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| RA | BS168_reference_genome | 1,474,890 | C→T | 100% | L45L (TTG→TTA) | kre ← | regulator of transcription factor ComK function via modulation of mRNA stability |
| RA | BS168_reference_genome | 1,487,388 | Δ1 bp | 8.9% | coding (351/477 nt) | fldN → | short‑chain flavodoxin (acts in lipid desaturation) |
| RA | BS168_reference_genome | 1,544,043 | C→T | 100% | F76F (TTC→TTT) | ylaB → | hypothetical protein |
| RA | BS168_reference_genome | 1,553,440 | T→C | 5.3% | L181S (TTG→TCG) | ftsW → | cell‑division protein; transporter of lipid‑linked cell wall precursors |
| RA | BS168_reference_genome | 1,561,476 | A→G | 7.5% | S337S (TCA→TCG) | ctaC → | cytochrome caa3 oxidase (subunit II) |
| RA | BS168_reference_genome | 1,565,774 | G→T | 15.8% | intergenic (‑65/‑75) | ylbA ← / → ylbB | conserved hypothetical protein/putative enzyme |
| RA | BS168_reference_genome | 1,604,981 | G→A | 5.2% | V71I (GTA→ATA) | sigE → | RNA polymerase sporulation‑specific sigma‑29 factor (sigma‑E) |
| RA | BS168_reference_genome | 1,616,578 | G→T | 19.9% | E104D (GAG→GAT) | ylyA → | sporulation‑related RNA polymerase‑binding factor |
| RA | BS168_reference_genome | 1,671,416 | T→G | 9.7% | N79T (AAC→ACC) | ylqB ← | conserved exported protein of unknown function |
| RA | BS168_reference_genome | 1,690,758 | C→G | 87.7% | R214G (CGT→GGT) | codY → | transcriptional regulator, GTP and BCAA‑dependent |
| RA | BS168_reference_genome | 1,722,170 | T→G | 21.1% | G57G (GGT→GGG) | cdsA → | phosphatidate cytidylyltransferase (CDP‑diglyceride synthase) |
| RA | BS168_reference_genome | 1,748,623 | T→C | 5.6% | S86P (TCC→CCC) | dapA → | 4‑hydroxy‑tetrahydrodipicolinate synthase |
| RA | BS168_reference_genome | 1,967,459 | A→T | 8.9% | I2466I (ATT→ATA) | ppsD ← | nonribosomal plipastatin synthetase D involved in synthesis of plipastatin |
| RA | BS168_reference_genome | 2,003,223 | G→T | 27.7% | intergenic (+41/+53) | iseA → / ← trnSL‑Arg1 | inhibitor of DL‑endopeptidases involved in cell‑separation/tRNA‑Arg |
| RA | BS168_reference_genome | 2,003,744 | T→C | 8.7% | K68R (AAA→AGA) | yoeC ← | putative bacteriophage integrase |
| RA | BS168_reference_genome | 2,063,773 | T→A | 100% | pseudogene (391/654 nt) | yobHc ← | fragment of putative DNA phage repair protein; putative defective prophage 6 |
| RA | BS168_reference_genome | 2,097,080:1 | +A | 100% | intergenic (‑104/+46) | azoJ ← / ← yocK | FMN‑dependent NADH‑azoreductase/putative general stress protein |
| RA | BS168_reference_genome | 2,115,511 | G→T | 25.9% | H387N (CAT→AAT) | cwlS ← | peptidoglycan hydrolase (cell wall‑binding d,l‑endopeptidase) |
| RA | BS168_reference_genome | 2,141,874 | T→G | 17.1% | T380T (ACA→ACC) | yodQ ← | putative deacetylase |
| RA | BS168_reference_genome | 2,271,424 | T→C | 100% | R78R (AGA→AGG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,505 | C→T | 100% | V51V (GTG→GTA) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,271,523 | A→C | 100% | D45E (GAT→GAG) | uvrX ← | lesion bypass phage DNA polymerase; phage SPbeta |
| RA | BS168_reference_genome | 2,286,175 | C→T | 6.3% | Q469* (CAA→TAA) | sprA → | serine‑type phage integrase; phage SPbeta |
| RA | BS168_reference_genome | 2,361,919 | T→C | 6.1% | R140R (CGA→CGG) ‡ | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,920 | C→T | 5.9% | R140Q (CGA→CAA) ‡ | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,933 | T→C | 6.0% | T136A (ACT→GCT) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,937 | A→G | 5.5% | A134A (GCT→GCC) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,953 | T→C | 5.4% | K129R (AAA→AGA) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,982 | C→T | 5.5% | R119R (CGG→CGA) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,994 | C→T | 6.9% | A115A (GCG→GCA) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,361,997 | A→G | 8.2% | D114D (GAT→GAC) | ypjB ← | sporulation septum‑associated protein |
| RA | BS168_reference_genome | 2,366,410 | C→A | 6.0% | M403I (ATG→ATT) | ypiA ← | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,369,127 | A→C | 8.3% | V38V (GTT→GTG) | aroA ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase (5‑enolpyruvoylshikimate‑3‑phosphate synthase) |
| RA | BS168_reference_genome | 2,369,193 | G→A | 7.7% | P16P (CCC→CCT) | aroA ← | 3‑phosphoshikimate 1‑carboxyvinyltransferase (5‑enolpyruvoylshikimate‑3‑phosphate synthase) |
| RA | BS168_reference_genome | 2,371,324 | T→A | 6.9% | L58L (CTA→CTT) | hisC ← | histidinol‑phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) |
| RA | BS168_reference_genome | 2,371,363 | C→T | 5.6% | E45E (GAG→GAA) | hisC ← | histidinol‑phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) |
| RA | BS168_reference_genome | 2,371,378 | A→C | 6.2% | P40P (CCT→CCG) | hisC ← | histidinol‑phosphate aminotransferase; tyrosine/phenylalanine aminotransferase (promiscuous) |
| RA | BS168_reference_genome | 2,378,366 | C→T | 6.3% | G245G (GGG→GGA) | aroB ← | 3‑dehydroquinate synthase |
| RA | BS168_reference_genome | 2,378,369 | A→G | 6.3% | F244F (TTT→TTC) | aroB ← | 3‑dehydroquinate synthase |
| RA | BS168_reference_genome | 2,378,387 | T→G | 6.1% | I238I (ATA→ATC) | aroB ← | 3‑dehydroquinate synthase |
| RA | BS168_reference_genome | 2,378,423 | C→T | 6.2% | A226A (GCG→GCA) | aroB ← | 3‑dehydroquinate synthase |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| RA | BS168_reference_genome | 2,389,623 | C→A | 6.5% | G189V (GGG→GTG) | gpsA ← | NADPH‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | BS168_reference_genome | 2,411,032 | G→A | 40.2% | intergenic (‑443/‑54) | fmnP ← / → serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| RA | BS168_reference_genome | 2,411,034 | A→G | 40.1% | intergenic (‑445/‑52) | fmnP ← / → serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| RA | BS168_reference_genome | 2,411,036 | A→G | 40.7% | intergenic (‑447/‑50) | fmnP ← / → serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| RA | BS168_reference_genome | 2,480,646 | 2 bp→AT | 100% | intergenic (+21/+103) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,654 | Δ1 bp | 100% | intergenic (+29/+96) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,480,667 | Δ1 bp | 100% | intergenic (+42/+83) | zwf → / ← gndA | glucose‑6‑phosphate 1‑dehydrogenase (NADP‑dependent)/NADP+‑dependent 6‑P‑gluconate dehydrogenase |
| RA | BS168_reference_genome | 2,500,847 | T→C | 7.3% | M228V (ATG→GTG) | lpdV ← | branched‑chain alpha‑keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) |
| RA | BS168_reference_genome | 2,541,998 | C→T | 5.4% | N316N (AAC→AAT) | yqhQ → | conserved protein of unknown function |
| RA | BS168_reference_genome | 2,581,726:1 | +T | 100% | intergenic (‑109/+45) | pstS ← / ← pbpA | phosphate ABC transporter (phosphate binding lipoprotein)/transpeptidase (penicillin‑binding protein 2A) |
| RA | BS168_reference_genome | 2,669,936 | C→A | 5.1% | A145A (GCG→GCT) | yqbT ← | putative phage baseplate assembly protein; skin element |
| RA | BS168_reference_genome | 2,824,280 | T→A | 12.4% | A500A (GCA→GCT) | recJ ← | single‑strand DNA‑specific exonuclease |
| RA | BS168_reference_genome | 2,854,034 | T→C | 5.9% | M176V (ATG→GTG) | spo0B ← | sporulation initiation phosphotransferase |
| RA | BS168_reference_genome | 2,919,974 | C→A | 5.9% | D119Y (GAT→TAT) | lcfA ← | long chain acyl‑CoA ligase (degradative) |
| RA | BS168_reference_genome | 2,990,552 | G→A | 6.1% | A194V (GCG→GTG) | maeB ← | NADP‑dependent malic enzyme (conversion of malate into pyruvate, anabolic) |
| RA | BS168_reference_genome | 3,017,336 | A→G | 5.3% | D100D (GAT→GAC) | ytxK ← | putative nucleic acid methyltransferase |
| RA | BS168_reference_genome | 3,045,335 | G→T | 13.6% | intergenic (‑166/+110) | ccpA ← / ← aroX | transcriptional regulator of catabolite repression (Lacl family)/bifunctional chorismate mutase type II‑isozyme 3 (regulatory domain); 3‑deoxy‑D‑arabino‑heptulosonate 7‑phosphate synthase |
| RA | BS168_reference_genome | 3,173,321 | A→T | 33.2% | intergenic (‑12/+3) | trnB‑Leu2 ← / ← trnB‑Gly1 | tRNA‑Leu/tRNA‑Gly |
| RA | BS168_reference_genome | 3,253,024 | T→G | 19.1% | K142T (AAG→ACG) | comA ← | two‑component response quorum‑sensing regulator |
| RA | BS168_reference_genome | 3,278,428 | T→G | 15.1% | V35G (GTT→GGT) | ald → | L‑alanine dehydrogenase (NAD‑dependent) |
| RA | BS168_reference_genome | 3,308,994 | A→G | 5.0% | K43R (AAA→AGA) | yutJ → | putative NADH dehydrogenase |
| RA | BS168_reference_genome | 3,337,967 | C→T | 7.1% | M178I (ATG→ATA) | pucD ← | xanthine dehydrogenase, substrate and molybdenum cofactor subunit |
| RA | BS168_reference_genome | 3,343,251 | A→C | 22.2% | S141A (TCG→GCG) | pucF ← | allantoate amidohydrolase |
| RA | BS168_reference_genome | 3,371,441 | C→T | 10.5% | V318V (GTG→GTA) | fadN ← | bifunctional enoyl‑CoA hydratase / 3‑hydroxyacyl‑CoA dehydrogenase |
| RA | BS168_reference_genome | 3,405,231 | A→C | 18.1% | S133R (AGC→CGC) | yvrD → | putative oxidoreductase |
| RA | BS168_reference_genome | 3,409,232 | T→A | 8.2% | D76V (GAT→GTT) | rsoA ← | regulator of sigma‑O |
| RA | BS168_reference_genome | 3,413,448 | T→G | 25.7% | T198P (ACC→CCC) | yvrO ← | putative ABC transporter (ATP‑binding protein) |
| RA | BS168_reference_genome | 3,420,541 | C→A | 8.0% | T175T (ACG→ACT) | lysP ← | lysine permease |
| RA | BS168_reference_genome | 3,439,579 | T→C | 5.3% | S461S (TCA→TCG) | cadA ← | Cd(II), Zn(II) and Co(II) exporter (ATPase) |
| RA | BS168_reference_genome | 3,564,023 | T→A | 5.1% | N500I (AAC→ATC) | psdB ← | lantibiotic ABC transporter (permease) |
| RA | BS168_reference_genome | 3,585,981 | C→T | 7.1% | M98I (ATG→ATA) | hisB ← | imidazoleglycerol‑phosphate dehydratase [Mn(II)‑dependent] |
| RA | BS168_reference_genome | 3,658,828 | G→T | 30.1% | pseudogene (65/486 nt) | tuaAn ← | putative undecaprenyl‑phosphate N‑acetylgalactosaminyl‑1‑phosphate transferase; N‑terminal part of TuaA |
| RA | BS168_reference_genome | 3,658,834 | G→T | 37.6% | pseudogene (59/486 nt) | tuaAn ← | putative undecaprenyl‑phosphate N‑acetylgalactosaminyl‑1‑phosphate transferase; N‑terminal part of TuaA |
| RA | BS168_reference_genome | 3,744,176 | A→T | 6.9% | intergenic (‑19/‑173) | fabZ ← / → rapD | beta‑hydroxyacyl‑[acyl carrier protein] dehydratase/response regulator aspartate phosphatase |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| RA | BS168_reference_genome | 3,935,823 | Δ1 bp | 100% | intergenic (+35/+1) | ywbE → / ← rlmI | conserved protein of unknown function/large subunit ribosomal RNA m5C1962 methyltransferase |
| RA | BS168_reference_genome | 4,031,756 | C→A | 12.9% | intergenic (‑111/+41) | yxxF ← / ← yxiE | putative transporter/phosphate starvation protein (universal stress protein A family) |
| RA | BS168_reference_genome | 4,052,070 | A→T | 18.5% | N68K (AAT→AAA) | deoC ← | deoxyribose‑phosphate aldolase |
| RA | BS168_reference_genome | 4,059,485 | T→G | 9.6% | intergenic (‑20/+3) | yxeN ← / ← yxeM | putative ABC transporter (permease)/putative ABC transporter (binding lipoprotein) |
| RA | BS168_reference_genome | 4,153,115 | G→T | 100% | L192I (CTT→ATT) | walK ← | two‑component sensor histidine kinase [YycG] |
| RA | BS168_reference_genome | 4,155,001 | T→G | 21.9% | intergenic (‑30/+52) | trnY‑Asp ← / ← trnY‑Glu | tRNA‑Asp/tRNA‑Glu |
| RA | BS168_reference_genome | 4,155,390:1 | +A | 100% | intergenic (‑181/+43) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| RA | pSIJ663_pHT315_araE_xy | 121 | G→C | 5.2% | intergenic (–/‑2857) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.2% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.3% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,179 | Δ1 bp | 100% | intergenic (–/‑799) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 7.0% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.9% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 9.6% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.0% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.3% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.4% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.7% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.8% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.6% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.8% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 6.0% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 5.8% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 6.4% | intergenic (+736/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,612 | T→A | 37.1% | intergenic (+881/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 160964–164866 | 165598–164903 | 38–4635 | 16 [11] | [7] 18 | [rrnI‑16S]–[rrnI‑5S] | [rrnI‑16S],rrnI‑23S,[rrnI‑5S] |
| * | * | ÷ | BS168_reference_genome | 166437–166702 | 171227–170393 | 3692–4791 | 16 [13] | [14] 23 | rrnH‑16S–[rrnH‑5S] | rrnH‑16S,rrnH‑23S,[rrnH‑5S] |
| * | * | ÷ | BS168_reference_genome | 171470–171679 | 176231–172977 | 1299–4762 | 16 [12] | [15] 16 | rrnG‑16S–[rrnG‑5S] | rrnG‑16S,rrnG‑23S,[rrnG‑5S] |
| * | * | ÷ | BS168_reference_genome | 3485352–3485453 | 3486761 | 1309–1410 | 18 [15] | [0] 24 | [araE]–araR | [araE],araR |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | 2410998 = | 42 (0.650) | 20 (0.320) | 12/226 | NT | 49.4% | intergenic (‑409/‑88) | fmnP/serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| ? | BS168_reference_genome | 3486762 = | 0 (0.000) | intergenic (+4/+45) | araR/yvbT | transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase | |||||
| * | ? | BS168_reference_genome | = 2411050 | 57 (0.890) | 44 (0.010) | 19/232 | NT | 43.6% | intergenic (‑461/‑36) | fmnP/serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | NA (NA) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 29 (0.000) | 9831 (1.040) | 198/222 | NT | 99.7% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 21 (0.000) | 11 (0.000) | 9/226 | NT | 48.4% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 3 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||