mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 35,960 | A→G | 35.8% | Y39C (TAT→TGT) | U712_00130 → | Protein xpaC |
| RA | CP006881 | 53,413 | G→A | 100% | intergenic (+45/‑94) | U712_00230 → / → U712_00235 | Protein sspF/4‑diphosphocytidyl‑2‑C‑methyl‑D‑erythritol kinase |
| RA | CP006881 | 66,157 | T→G | 19.2% | V447V (GTT→GTG) | U712_00295 → | putative membrane protein yabM |
| RA | CP006881 | 72,897 | G→A | 6.0% | R790H (CGC→CAC) | U712_00330 → | Stage II sporulation protein E |
| RA | CP006881 | 78,613 | A→T | 5.2% | N544Y (AAC→TAC) | U712_00355 → | ATP‑dependent zinc metalloprotease FtsH |
| RA | CP006881 | 186,066 | T→G | 20.3% | K126N (AAA→AAC) | U712_00845 ← | Uncharacterized protein ybbC |
| RA | CP006881 | 212,278 | A→T | 12.8% | T139S (ACC→TCC) | U712_00975 → | putative MFS‑type transporter ybcL |
| RA | CP006881 | 214,982 | C→T | 100% | A268V (GCC→GTC) | U712_00980 → | Uncharacterized protein skfB |
| RA | CP006881 | 389,046 | T→G | 17.1% | R437R (CGT→CGG) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 455,815 | T→G | 22.2% | intergenic (+85/‑245) | U712_02095 → / → U712_02100 | Hypothetical Protein/Uncharacterized protein YcsE |
| RA | CP006881 | 455,890 | T→G | 12.6% | intergenic (+160/‑170) | U712_02095 → / → U712_02100 | Hypothetical Protein/Uncharacterized protein YcsE |
| RA | CP006881 | 535,307 | C→T | 5.2% | Q296* (CAG→TAG) | U712_02575 → | putative HTH‑type transcriptional regulator ydeL |
| RA | CP006881 | 572,484 | T→G | 19.2% | V21V (GTT→GTG) | U712_02825 → | Putative membrane protein ydgH |
| RA | CP006881 | 620,020 | A→G | 10.2% | Q153Q (CAA→CAG) | U712_03045 → | putative BsuMI modification methylase subunit ydiP |
| RA | CP006881 | 630,972 | T→G | 8.5% | F182C (TTT→TGT) | U712_03085 → | Sorbitol dehydrogenase |
| RA | CP006881 | 661,415 | A→C | 13.3% | intergenic (+92/‑231) | U712_03235 → / → U712_03240 | Uncharacterized protein yebG/N5‑carboxyaminoimidazole ribonucleotide mutase |
| RA | CP006881 | 711,294 | T→C | 5.6% | K435R (AAA→AGA) | U712_03445 ← | Uncharacterized protein yezG |
| RA | CP006881 | 755,175 | A→C | 27.8% | V131G (GTG→GGG) | U712_03655 ← | Uncharacterized protein yetN |
| RA | CP006881 | 924,066:1 | +A | 100% | intergenic (‑46/‑233) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 974,428 | G→T | 5.1% | intergenic (‑168/‑33) | U712_04760 ← / → U712_04765 | Uncharacterized protein yhdB/Uncharacterized protein yhdC |
| RA | CP006881 | 979,099 | A→T | 5.5% | E140V (GAA→GTA) | U712_04785 → | Stage V sporulation protein R |
| RA | CP006881 | 983,115 | G→T | 18.2% | H290N (CAT→AAT) | U712_04800 ← | HTH‑type transcriptional regulator CitR |
| RA | CP006881 | 986,184 | C→A | 22.8% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 998,311 | C→T | 5.4% | R20C (CGC→TGC) | U712_04875 → | Hypothetical Protein |
| RA | CP006881 | 1,011,322 | T→G | 27.5% | V406G (GTT→GGT) | U712_04945 → | putative multidrug resistance ABC transporter ATP‑binding/permease protein YheH |
| RA | CP006881 | 1,058,336 | A→C | 19.5% | K80N (AAA→AAC) | U712_05200 → | Putative aminopeptidase yhfE |
| RA | CP006881 | 1,091,483:1 | +T | 100% | coding (1163/1326 nt) | U712_05390 ← | NTD biosynthesis operon protein ntdA |
| RA | CP006881 | 1,105,789 | A→G | 68.8% | P983P (CCA→CCG) | U712_05435 → | ATP‑dependent helicase/nuclease subunit A |
| RA | CP006881 | 1,211,770 | A→G | 93.4% | A22A (GCA→GCG) | U712_06040 → | Spore coat protein O |
| RA | CP006881 | 1,287,928 | G→T | 10.4% | V141L (GTA→TTA) | U712_06535 → | Positive control factor |
| RA | CP006881 | 1,342,948 | A→C | 8.3% | N103H (AAC→CAC) | U712_06850 → | Gamma‑glutamyl phosphate reductase |
| RA | CP006881 | 1,467,379 | C→A | 24.2% | I20I (ATC→ATA) | U712_07540 → | Putative efflux system component yknX |
| RA | CP006881 | 1,528,836 | C→A | 19.1% | intergenic (‑89/‑51) | U712_07870 ← / → U712_07875 | Uncharacterized protein ylbA/Uncharacterized protein ylbB |
| RA | CP006881 | 1,602,920 | G→A | 5.9% | A640T (GCC→ACC) | U712_08240 → | Calcium‑transporting ATPase |
| RA | CP006881 | 1,653,146 | G→A | 14.1% | intergenic (+29/‑11) | U712_08490 → / → U712_08495 | ATP‑dependent protease ATPase subunit ClpY/GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,491 | C→T | 69.7% | T112I (ACA→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,772 | A→T | 6.3% | I206F (ATT→TTT) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,654,882 | T→C | 9.5% | F60L (TTC→CTC) | U712_08505 → | Flagellar basal‑body rod protein flgC |
| RA | CP006881 | 1,657,548 | C→T | 13.3% | P131L (CCG→CTG) | U712_08520 → | Flagellar motor switch protein FliG |
| RA | CP006881 | 1,662,223 | C→A | 80.6% | S303* (TCG→TAG) | U712_08545 → | putative flagellar hook‑length control protein |
| RA | CP006881 | 1,666,466 | G→T | 19.9% | E253* (GAA→TAA) | U712_08575 → | Flagellar motor switch phosphatase FliY |
| RA | CP006881 | 1,667,566 | T→C | 5.2% | P106P (CCT→CCC) | U712_08585 → | Flagellar biosynthetic protein fliZ |
| RA | CP006881 | 1,672,787 | G→T | 16.1% | M1M (ATG→ATT) † | U712_08615 → | Flagellar biosynthesis protein flhF |
| RA | CP006881 | 1,685,208 | T→G | 11.9% | G54G (GGT→GGG) | U712_08685 → | Phosphatidate cytidylyltransferase |
| RA | CP006881 | 1,690,479 | A→G | 7.5% | E103E (GAA→GAG) | U712_08705 → | DNA polymerase III polC‑type |
| RA | CP006881 | 1,750,486 | C→A | 22.2% | A449E (GCA→GAA) | U712_08975 → | Polyketide biosynthesis protein pksE |
| RA | CP006881 | 1,824,364 | A→T | 6.0% | Y31F (TAT→TTT) | U712_09050 → | Hypothetical Protein |
| RA | CP006881 | 1,913,508 | T→G | 13.7% | K247N (AAA→AAC) | U712_09590 ← | putative carboxylase YngE |
| RA | CP006881 | 1,985,776 | T→C | 6.4% | A35A (GCA→GCG) | U712_09810 ← | Expansin‑yoaJ |
| RA | CP006881 | 2,017,349 | G→C | 5.6% | W18S (TGG→TCG) ‡ | U712_09990 → | Prophage‑derived protein uncharacterized protein yozM |
| RA | CP006881 | 2,017,350 | G→A | 5.6% | W18* (TGG→TGA) ‡ | U712_09990 → | Prophage‑derived protein uncharacterized protein yozM |
| RA | CP006881 | 2,107,244 | A→C | 5.3% | F206V (TTT→GTT) | U712_10490 ← | putative multidrug resistance protein ypnP |
| RA | CP006881 | 2,107,527 | A→C | 23.8% | G111G (GGT→GGG) | U712_10490 ← | putative multidrug resistance protein ypnP |
| RA | CP006881 | 2,136,638 | A→G | 5.1% | F220S (TTT→TCT) | U712_10675 ← | Xanthine permease |
| RA | CP006881 | 2,144,120 | A→C | 11.3% | K138N (AAA→AAC) | U712_10710 → | 4‑deoxy‑L‑threo‑5‑hexosulose‑uronate ketol‑isomerase |
| RA | CP006881 | 2,190,472 | A→G | 5.6% | P299P (CCT→CCC) | U712_10975 ← | Tryptophan synthase beta chain |
| RA | CP006881 | 2,289,100 | G→T | 100% | P184T (CCG→ACG) | U712_11585 ← | putative oxidoreductase yqjQ |
| RA | CP006881 | 2,455,144 | C→T | 5.5% | L13L (CTG→CTA) | U712_12510 ← | Hypothetical Protein |
| RA | CP006881 | 2,564,138 | Δ1 bp | 5.1% | coding (180/870 nt) | U712_13180 ← | putative HTH‑type transcriptional regulator yraN |
| RA | CP006881 | 2,643,024 | A→C | 17.0% | F204V (TTT→GTT) | U712_13595 ← | Single‑stranded‑DNA‑specific exonuclease recJ |
| RA | CP006881 | 2,780,168 | C→A | 11.7% | E40* (GAA→TAA) | U712_14330 ← | Uncharacterized protein ytxC |
| RA | CP006881 | 2,780,237 | G→T | 13.2% | H17N (CAT→AAT) | U712_14330 ← | Uncharacterized protein ytxC |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,991,174 | A→T | 29.9% | intergenic (‑10/+8) | U712_21340 ← / ← U712_21345 | tRNA‑Leu/tRNA‑Gly |
| RA | CP006881 | 3,124,465 | T→C | 6.4% | E95G (GAA→GGA) | U712_16035 ← | Diaminopimelate epimerase |
| RA | CP006881 | 3,161,062 | T→G | 14.5% | E155A (GAG→GCG) | U712_16225 ← | Allantoate amidohydrolase |
| RA | CP006881 | 3,190,844 | Δ1 bp | 5.9% | coding (659/909 nt) | U712_16415 ← | Proline dehydrogenase 1 |
| RA | CP006881 | 3,190,845 | Δ1 bp | 5.6% | coding (658/909 nt) | U712_16415 ← | Proline dehydrogenase 1 |
| RA | CP006881 | 3,285,257:1 | +T | 100% | intergenic (‑77/+143) | U712_16905 ← / ← U712_16910 | Transcriptional repressor sdpR/Glycine betaine/carnitine/choline transport system permease protein opuCD |
| RA | CP006881 | 3,335,011 | A→C | 20.5% | L111R (CTT→CGT) | U712_17145 ← | putative sugar transferase EpsL |
| RA | CP006881 | 3,347,786 | C→T | 5.1% | intergenic (‑77/‑169) | U712_17200 ← / → U712_17205 | Uncharacterized protein YveK/HTH‑type transcriptional regulator slrR |
| RA | CP006881 | 3,406,804 | C→T | 7.5% | A137A (GCG→GCA) | U712_17490 ← | ATP phosphoribosyltransferase regulatory subunit |
| RA | CP006881 | 3,410,425 | T→C | 6.6% | I275M (ATA→ATG) | U712_17515 ← | putative membrane protein yvoD |
| RA | CP006881 | 3,444,703 | A→C | 12.8% | V43G (GTC→GGC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| RA | CP006881 | 3,476,682 | G→T | 40.0% | T22K (ACA→AAA) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,476,688 | G→T | 27.1% | S20Y (TCT→TAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,476,692 | G→T | 24.3% | H19N (CAT→AAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
| RA | CP006881 | 3,540,644 | A→G | 8.7% | I181T (ATA→ACA) | U712_18145 ← | Putative NAD(P)H‑dependent FMN‑containing oxidoreductase ywqN |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,578,736 | T→C | 5.3% | A65A (GCT→GCC) | U712_18370 → | Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,591,188 | A→C | 24.0% | R6R (CGT→CGG) | U712_18465 ← | Molybdenum cofactor biosynthesis protein A |
| RA | CP006881 | 3,618,134 | C→T | 71.0% | G20S (GGT→AGT) | U712_18650 ← | putative transporter YwkB |
| RA | CP006881 | 3,634,554 | G→T | 8.2% | A16S (GCC→TCC) | U712_18740 → | Uncharacterized protein YwjE |
| RA | CP006881 | 3,675,477 | A→T | 24.8% | Y266N (TAC→AAC) | U712_18935 ← | Methylenomycin A resistance protein |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | 1 bp→AT | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,233 | G→C | 14.2% | intergenic (‑65/‑464) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,241 | G→C | 16.9% | intergenic (‑73/‑456) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,837,356 | G→C | 16.3% | R36G (CGT→GGT) | U712_19795 ← | Uncharacterized protein yxiK |
| RA | CP006881 | 3,879,056 | C→T | 5.7% | A314T (GCA→ACA) | U712_19990 ← | Putative monooxygenase yxeK |
| RA | CP006881 | 3,890,467 | T→C | 6.3% | Y120C (TAC→TGC) | U712_20060 ← | Transcriptional regulatory protein yxdJ |
| RA | CP006881 | 3,894,527 | G→T | 15.3% | Q49K (CAA→AAA) | U712_20080 ← | Inositol 2‑dehydrogenase/D‑chiro‑inositol 3‑dehydrogenase |
| RA | CP006881 | 3,960,740 | C→A | 10.4% | G397G (GGG→GGT) | U712_20420 ← | Hypothetical Protein |
| RA | CP006881 | 3,972,853 | T→G | 12.2% | intergenic (‑30/+52) | U712_21400 ← / ← U712_21405 | tRNA‑Asp/tRNA‑Glu |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 6.6% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,081 | C→A | 7.9% | intergenic (–/‑897) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,146 | A→G | 90.6% | intergenic (–/‑832) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,729 | T→G | 6.8% | intergenic (+14/‑142) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 10.0% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 10.4% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,743 | A→T | 5.4% | intergenic (+28/‑128) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,749 | A→T | 5.1% | intergenic (+34/‑122) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.5% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 6.7% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.2% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 8.0% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.8% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,302 | A→C | 6.1% | intergenic (+571/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,464 | T→G | 5.9% | intergenic (+733/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,467 | T→G | 5.8% | intergenic (+736/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245159 | 246109 | 951 | 24 [20] | [19] 22 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067427 | 1068631 | 1205 | 26 [20] | [20] 23 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149050 | 1150711 | 1662 | 22 [21] | [21] 23 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503055 | 1504650 | 1596 | 22 [18] | [18] 24 | U712_07740 | U712_07740 |
| * | * | ÷ | CP006881 | 1562261 | 1566623 | 4363 | 22 [21] | [19] 22 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 3303199–3303322 | 3304612 | 1291–1414 | 26 [20] | [0] 70 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725699 | 3728135 | 2437 | 29 [18] | [18] 23 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757683 | 3759663 | 1981 | 25 [21] | [20] 22 | U712_19375 | U712_19375 |
| * | * | ÷ | pSIJ663_pHT315_araE_xy | 5552 | 11149–9803 | 4252–5598 | 7440 [54] | [4246] 4349 | ampR/– | –/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 2471183 = | 75 (0.930) | 5 (0.060) | 4/222 | NT | 8.7% | intergenic (‑532/+42) | U712_12610/U712_12615 | Sporulation‑specific extracellular nuclease/Putative DNA recombinase |
| ? | CP006881 | = 2519215 | 33 (0.430) | coding (24/417 nt) | U712_12925 | RNA polymerase sigma‑K factor | |||||
| * | ? | CP006881 | 3304613 = | 0 (0.000) | 31 (0.020) +50 bp |
19/132 | NT | 94.0% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 7 (0.000) | intergenic (+5050/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5551 | 15 (0.000) | 6430 (1.040) | 188/222 | NT | 99.8% | intergenic (+820/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9889 = | NA (NA) | intergenic (+5158/–) | ampR/– | –/– | |||||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 4 (0.000) | 20 (0.000) | 15/226 | NT | 83.5% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 4 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||