mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 30,182 | C→T | 100% | intergenic (+147/‑96) | U712_00120 → / → U712_20865 | Sigma‑K factor‑processing regulatory protein BofA/16S ribosomal RNA |
| RA | CP006881 | 45,301 | A→G | 6.9% | intergenic (‑169/‑332) | U712_00190 ← / → U712_00195 | Transition state regulatory protein AbrB/Methionyl‑tRNA synthetase |
| RA | CP006881 | 64,165 | C→A | 15.9% | R23R (CGA→AGA) | U712_00290 → | Stage V sporulation protein T |
| RA | CP006881 | 84,430 | Δ1 bp | 7.4% | coding (141/585 nt) | U712_00385 → | Para‑aminobenzoate/anthranilate synthase glutamine amidotransferase component II |
| RA | CP006881 | 104,429 | A→G | 7.4% | A287A (GCA→GCG) | U712_00440 → | Negative regulator of genetic competence ClpC/MecB |
| RA | CP006881 | 125,619 | C→T | 100% | R21C (CGT→TGT) | U712_00560 → | DNA‑directed RNA polymerase subunit beta' |
| RA | CP006881 | 248,388 | G→T | 10.2% | G39V (GGC→GTC) | U712_01160 → | putative membrane protein ybfM |
| RA | CP006881 | 320,990 | T→C | 14.9% | intergenic (‑283/‑28) | U712_01530 ← / → U712_01535 | putative HTH‑type transcriptional regulator yceK/Glycine betaine transport ATP‑binding protein OpuAA |
| RA | CP006881 | 353,697 | T→G | 21.4% | F279V (TTT→GTT) | U712_01685 → | Ferredoxin‑‑NADP reductase 1 |
| RA | CP006881 | 365,875 | T→A | 5.3% | L11L (CTT→CTA) | U712_01730 → | Uncharacterized protein yczL |
| RA | CP006881 | 387,864 | T→G | 16.0% | A43A (GCT→GCG) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 394,689 | A→G | 5.5% | V2318V (GTA→GTG) | U712_01810 → | Surfactin synthase subunit 2 |
| RA | CP006881 | 421,277 | A→G | 19.4% | A392A (GCA→GCG) | U712_01915 → | Spore germination protein KA |
| RA | CP006881 | 579,910 | Δ1 bp | 6.2% | coding (205/1263 nt) | U712_02855 → | Putative sporulation‑specific glycosylase ydhD |
| RA | CP006881 | 625,297 | G→T | 6.9% | G212C (GGT→TGT) | U712_03060 → | Type‑2 restriction enzyme BsuMI component ydjA |
| RA | CP006881 | 883,744 | T→G | 24.7% | A79A (GCT→GCG) | U712_04295 → | putative siderophore transport system permease protein yfiZ |
| RA | CP006881 | 924,079 | T→A | 100% | intergenic (‑59/‑220) | U712_04490 ← / → U712_04495 | Vegetative catalase/Aliphatic sulfonates import ATP‑binding protein SsuB |
| RA | CP006881 | 937,431 | G→A | 6.4% | V414V (GTG→GTA) | U712_04575 → | Protein prkA |
| RA | CP006881 | 986,184 | C→A | 22.4% | intergenic (+50/‑200) | U712_04810 → / → U712_04815 | putative oxidoreductase yhdF/putative amino acid permease YhdG |
| RA | CP006881 | 1,045,011 | A→C | 5.8% | S276S (TCT→TCG) | U712_05135 ← | putative membrane protein yhfA |
| RA | CP006881 | 1,059,464 | G→A | 6.6% | R105R (CGG→CGA) | U712_05205 → | Uncharacterized protein yhfF |
| RA | CP006881 | 1,325,779 | C→T | 7.7% | T190I (ACC→ATC) | U712_06750 → | Dipeptide transport system permease protein dppC |
| RA | CP006881 | 1,371,810 | C→T | 6.0% | M269I (ATG→ATA) | U712_07010 ← | Signaling protein ykoW |
| RA | CP006881 | 1,400,794 | A→G | 6.7% | intergenic (‑158/‑336) | U712_07160 ← / → U712_07165 | ATP‑dependent Clp protease ATP‑binding subunit ClpE/putative membrane protein ykvI |
| RA | CP006881 | 1,440,895 | C→A | 5.1% | G25C (GGC→TGC) | U712_07385 ← | putative metallophosphoesterase ykuE |
| RA | CP006881 | 1,486,333 | A→T | 17.4% | S497S (TCT→TCA) | U712_07630 ← | Ribonuclease J 1 |
| RA | CP006881 | 1,513,321 | G→T | 7.0% | G273G (GGG→GGT) | U712_07795 → | Uncharacterized protein ylaK |
| RA | CP006881 | 1,514,089 | T→C | 6.4% | M78V (ATG→GTG) | U712_07800 ← | Uncharacterized protein ylaL |
| RA | CP006881 | 1,524,394 | T→C | 5.2% | G297G (GGT→GGC) | U712_07845 → | Cytochrome c oxidase subunit 2 |
| RA | CP006881 | 1,579,420 | T→A | 27.1% | I39N (ATC→AAC) | U712_08135 → | Uncharacterized protein YlyA |
| RA | CP006881 | 1,581,820 | A→G | 5.2% | E160G (GAA→GGA) | U712_08150 → | Bifunctional protein pyrR |
| RA | CP006881 | 1,653,418 | A→G | 10.2% | N88D (AAC→GAC) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,734 | A→G | 13.1% | E193G (GAG→GGG) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,749 | A→G | 7.3% | E198G (GAA→GGA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| RA | CP006881 | 1,653,890 | T→C | 13.5% | L245P (CTA→CCA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| MC JC | CP006881 | 1,668,072 | Δ12 bp | 100% | coding (172‑183/666 nt) | U712_08590 → | Flagellar biosynthetic protein fliP |
| RA | CP006881 | 1,724,332 | G→A | 6.8% | E155K (GAG→AAG) | U712_08860 → | Uncharacterized protein ymfK |
| RA | CP006881 | 1,816,378 | G→T | 5.1% | S817S (TCG→TCT) | U712_09030 → | Polyketide synthase PksR |
| RA | CP006881 | 1,966,649 | C→T | 6.4% | C80Y (TGC→TAC) | U712_09710 ← | Glutamate synthase [NADPH] large chain |
| RA | CP006881 | 2,025,287 | T→G | 7.3% | T175T (ACA→ACC) | U712_10010 ← | UPF0720 protein yobL |
| RA | CP006881 | 2,045,339 | C→T | 5.9% | V227I (GTT→ATT) | U712_10120 ← | Cell wall‑binding protein yocH |
| RA | CP006881 | 2,064,606 | A→G | 9.7% | L468P (CTG→CCG) | U712_10215 ← | Uncharacterized protein yojO |
| RA | CP006881 | 2,264,965 | T→A | 8.2% | E46V (GAA→GTA) | U712_11420 ← | Purine nucleoside phosphorylase 1 |
| RA | CP006881 | 2,487,936 | C→A | 7.7% | G97W (GGG→TGG) | U712_12715 ← | Uncharacterized protein YqbT |
| RA | CP006881 | 2,536,462 | C→T | 5.4% | Q89* (CAG→TAG) | U712_13025 → | Spermine/spermidine acetyltransferase |
| RA | CP006881 | 2,568,223 | A→G | 8.2% | E237G (GAA→GGA) | U712_13205 → | putative hydrolase yraK |
| RA | CP006881 | 2,589,191 | A→G | 7.5% | H7R (CAT→CGT) | U712_13325 → | Putative peptidoglycan O‑acetyltransferase YrhL |
| RA | CP006881 | 2,691,907 | C→T | 8.6% | E40E (GAG→GAA) | U712_13870 ← | Glutamate‑1‑semialdehyde 2,1‑aminomutase |
| RA | CP006881 | 2,705,346 | T→C | 6.1% | K33R (AAA→AGA) | U712_13925 ← | Trigger factor |
| RA | CP006881 | 2,736,528 | T→C | 7.3% | E552G (GAA→GGA) | U712_14120 ← | Long‑chain‑fatty‑acid‑‑CoA ligase |
| RA | CP006881 | 2,746,589 | T→C | 8.2% | I230V (ATT→GTT) | U712_14155 ← | Phenylalanyl‑tRNA synthetase beta chain |
| RA | CP006881 | 2,781,639 | T→A | 6.9% | K112N (AAA→AAT) | U712_14340 ← | Primosomal protein DnaI |
| RA | CP006881 | 2,801,996 | G→A | 100% | A327T (GCC→ACC) | U712_14440 → | UPF0118 membrane protein ytvI |
| RA | CP006881 | 2,823,628 | A→T | 8.6% | I19N (ATT→AAT) | U712_14555 ← | L‑cystine transport system permease protein tcyM |
| RA | CP006881 | 2,922,084 | G→A | 6.1% | A272V (GCA→GTA) | U712_15050 ← | Leucyl‑tRNA synthetase |
| RA | CP006881 | 2,963,948 | G→A | 100% | intergenic (‑135/+145) | U712_15285 ← / ← U712_15290 | Manganese‑binding lipoprotein mntA/o‑succinylbenzoate synthase |
| RA | CP006881 | 3,101,990 | G→T | 5.0% | L1174I (CTT→ATT) | U712_15925 ← | Dimodular nonribosomal peptide synthase |
| RA | CP006881 | 3,172,775 | A→G | 8.3% | V5A (GTT→GCT) | U712_16295 ← | Uncharacterized protein yurT |
| RA | CP006881 | 3,186,704 | C→A | 24.7% | E389* (GAA→TAA) | U712_16400 ← | 3‑ketoacyl‑CoA thiolase |
| RA | CP006881 | 3,217,386 | A→C | 28.3% | F277V (TTT→GTT) | U712_16570 ← | putative MFS‑type transporter yvqJ |
| RA | CP006881 | 3,265,482 | C→G | 6.7% | G169R (GGC→CGC) | U712_16795 ← | putative membrane protein yvaC |
| RA | CP006881 | 3,486,227 | T→A | 10.6% | K513N (AAA→AAT) | U712_17900 ← | Minor teichoic acid biosynthesis protein ggaB |
| RA | CP006881 | 3,578,466 | Δ1 bp | 100% | intergenic (‑59/‑76) | U712_18365 ← / → U712_18370 | Stage II sporulation protein Q/Putative phosphinothricin acetyltransferase YwnH |
| RA | CP006881 | 3,579,785 | Δ1 bp | 100% | coding (73/132 nt) | U712_18380 → | Hypothetical Protein |
| RA | CP006881 | 3,591,188 | A→C | 22.1% | R6R (CGT→CGG) | U712_18465 ← | Molybdenum cofactor biosynthesis protein A |
| RA | CP006881 | 3,659,618 | T→C | 8.5% | D249D (GAT→GAC) | U712_18855 → | Putative zinc protease AlbF |
| RA | CP006881 | 3,697,159 | C→G | 10.9% | A404P (GCA→CCA) | U712_19045 ← | 1‑pyrroline‑5‑carboxylate dehydrogenase |
| RA | CP006881 | 3,723,022 | G→A | 100% | intergenic (‑136/‑165) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,045 | T→C | 100% | intergenic (‑159/‑142) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,066:1 | +A | 91.7% | intergenic (‑180/‑121) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,067 | G→T | 100% | intergenic (‑181/‑120) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,091 | A→T | 100% | intergenic (‑205/‑96) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,095 | T→A | 100% | intergenic (‑209/‑92) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,097 | T→G | 100% | intergenic (‑211/‑90) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,118 | C→T | 100% | intergenic (‑232/‑69) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,121 | T→A | 100% | intergenic (‑235/‑66) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,130 | A→T | 100% | intergenic (‑244/‑57) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,162 | C→T | 100% | intergenic (‑276/‑25) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,166 | C→G | 100% | intergenic (‑280/‑21) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,183 | A→G | 100% | intergenic (‑297/‑4) | U712_19190 ← / → U712_19195 | PTS system sucrose‑specific EIIBC component/putative transporter ywcJ |
| RA | CP006881 | 3,723,204 | G→A | 100% | L6L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,210 | A→G | 100% | K8K (AAA→AAG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,222 | C→T | 100% | Y12Y (TAC→TAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,231 | C→A | 100% | N15K (AAC→AAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,236 | T→A | 100% | L17Q (CTA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,246 | T→C | 100% | F20F (TTT→TTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,248 | T→C | 100% | V21A (GTT→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,252 | T→A | 100% | S22S (TCT→TCA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,273 | 2 bp→TC | 100% | coding (87‑88/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,276 | A→G | 100% | R30R (AGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,291 | C→T | 100% | S35S (AGC→AGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,294 | G→A | 100% | M36I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,300 | C→T | 100% | I38I (ATC→ATT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,303 | A→T | 100% | G39G (GGA→GGT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,306 | C→T | 100% | F40F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,336 | T→C | 100% | S50S (AGT→AGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,344 | C→T | 100% | S53F (TCT→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,351 | G→T | 100% | A55A (GCG→GCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,366 | T→C | 100% | A60A (GCT→GCC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,387 | A→T | 100% | T67T (ACA→ACT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,406 | C→A | 100% | L74M (CTG→ATG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,438 | T→C | 100% | T84T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,447 | T→C | 100% | T87T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,459 | T→C | 100% | T91T (ACT→ACC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,474 | A→G | 100% | R96R (CGA→CGG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,483 | 2 bp→CA | 100% | coding (297‑298/771 nt) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,492 | A→C | 100% | R102R (CGA→CGC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,501 | G→A | 100% | L105L (CTG→CTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,505 | C→T | 100% | L107L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,534 | G→A | 100% | L116L (TTG→TTA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,549 | A→G | 100% | L121L (CTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,558 | T→C | 100% | I124I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,573 | A→G | 100% | T129T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,576 | G→A | 100% | G130G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,589 | G→C | 100% | A135P (GCT→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,616 | C→T | 100% | L144L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,642 | C→G | 100% | P152P (CCC→CCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,652 | C→T | 100% | L156L (CTG→TTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,666 | G→A | 100% | G160G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,717 | T→C | 100% | L177L (CTT→CTC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,729 | G→A | 100% | G181G (GGG→GGA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,738 | C→T | 100% | L184L (CTC→CTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,783 | C→T | 100% | F199F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,822 | A→G | 100% | S212S (TCA→TCG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,853 | G→C | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,855 | A→G | 100% | V223M (GTA→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,879 | T→C | 100% | I231I (ATT→ATC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,888 | A→G | 100% | T234T (ACA→ACG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,897 | C→T | 100% | N237N (AAC→AAT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,912 | G→A | 100% | M242I (ATG→ATA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,915 | C→T | 100% | V243V (GTC→GTT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,933 | T→C | 100% | Y249Y (TAT→TAC) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,939 | G→A | 100% | T251T (ACG→ACA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,942 | C→G | 100% | L252L (CTC→CTG) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,948 | C→T | 100% | P254P (CCC→CCT) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,723,952 | A→C | 100% | K256Q (AAA→CAA) | U712_19195 → | putative transporter ywcJ |
| RA | CP006881 | 3,724,053 | C→T | 100% | E258E (GAG→GAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,078 | C→T | 100% | S250N (AGT→AAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,092 | T→C | 100% | A245A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,101 | A→C | 100% | L242L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,119 | A→G | 100% | F236F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,194 | A→G | 100% | S211S (AGT→AGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,200 | T→C | 100% | A209A (GCA→GCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,208 | T→G | 100% | R207R (AGA→CGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,274 | C→T | 100% | E185K (GAA→AAA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,392 | A→C | 100% | L145L (CTT→CTG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,446 | G→A | 100% | Y127Y (TAC→TAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,467 | T→C | 100% | K120K (AAA→AAG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,542 | A→G | 100% | S95S (TCT→TCC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,587 | C→T | 100% | G80G (GGG→GGA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,623 | A→T | 100% | I68I (ATT→ATA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,659 | A→G | 100% | F56F (TTT→TTC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,678 | T→C | 100% | H50R (CAC→CGC) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,719 | G→A | 100% | D36D (GAC→GAT) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,749 | T→C | 100% | P26P (CCA→CCG) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,808 | G→A | 100% | L7L (CTA→TTA) | U712_19200 ← | SacPA operon antiterminator |
| RA | CP006881 | 3,724,831 | C→T | 100% | intergenic (‑5/+35) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,849 | A→T | 100% | intergenic (‑23/+17) | U712_19200 ← / ← U712_19205 | SacPA operon antiterminator/Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,902 | A→C | 100% | A89A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,977 | T→C | 100% | Q64Q (CAA→CAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,724,980 | T→C | 100% | K63K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,010 | C→T | 100% | E53E (GAG→GAA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,025 | A→G | 100% | L48L (CTT→CTC) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,031 | C→T | 100% | A46A (GCG→GCA) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,043 | C→A | 100% | A42A (GCG→GCT) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,049 | T→C | 100% | K40K (AAA→AAG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,082 | A→C | 100% | A29A (GCT→GCG) | U712_19205 ← | Uncharacterized protein ywcI |
| RA | CP006881 | 3,725,205:1 | +T | 100% | intergenic (‑37/‑492) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,237 | A→G | 100% | intergenic (‑69/‑460) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,725,239 | 2 bp→AA | 100% | intergenic (‑71/‑457) | U712_19205 ← / → U712_19210 | Uncharacterized protein ywcI/Minor extracellular protease vpr |
| RA | CP006881 | 3,785,128 | G→A | 5.6% | A178T (GCG→ACG) | U712_19520 → | putative MFS‑type transporter yxlH |
| RA | CP006881 | 3,837,361 | A→C | 26.2% | F34C (TTT→TGT) | U712_19795 ← | Uncharacterized protein yxiK |
| RA | CP006881 | 3,905,563 | G→T | 14.7% | D86Y (GAT→TAT) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,905,575 | G→C | 10.5% | G90R (GGC→CGC) | U712_20135 → | Uncharacterized protein yxcD |
| RA | CP006881 | 3,938,914 | G→T | 15.1% | intergenic (+6/+104) | U712_20290 → / ← U712_20295 | NADH dehydrogenase/Aryl‑phospho‑beta‑D‑glucosidase BglA |
| RA | pSIJ663_pHT315_araE_xy | 131 | G→C | 5.7% | intergenic (–/‑2847) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 137 | A→C | 5.1% | intergenic (–/‑2841) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 2,039 | C→T | 100% | intergenic (–/‑939) | – / → eryR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 2,655 | Δ3 bp | 100% | intergenic (–/‑321) | – / → eryR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,735 | A→T | 9.3% | intergenic (+20/‑136) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,741 | G→T | 10.6% | intergenic (+26/‑130) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 3,783 | G→T | 5.2% | intergenic (+68/‑88) | eryR → / → ampR | –/– |
| JC | pSIJ663_pHT315_araE_xy | 3,843 | Δ5 bp | 100% | intergenic (+128/‑24) | eryR → / → ampR | –/– |
| RA | pSIJ663_pHT315_araE_xy | 4,625 | A→C | 7.0% | K252T (AAG→ACG) | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,648 | T→A | 10.0% | Y260N (TAC→AAC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 4,649 | A→C | 7.1% | Y260S (TAC→TCC) ‡ | ampR → | |
| RA | pSIJ663_pHT315_araE_xy | 5,049 | C→T | 100% | intergenic (+318/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,173 | T→G | 6.3% | intergenic (+442/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,205 | G→A | 100% | intergenic (+474/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 5,478 | G→A | 100% | intergenic (+747/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,673 | A→C | 6.6% | intergenic (+1942/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,676 | T→G | 6.4% | intergenic (+1945/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,689 | A→C | 7.5% | intergenic (+1958/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,697 | T→A | 5.6% | intergenic (+1966/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,717 | G→C | 8.3% | intergenic (+1986/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 6,718 | A→C | 9.4% | intergenic (+1987/–) | ampR → / – | –/– |
| RA | pSIJ663_pHT315_araE_xy | 8,799 | A→C | 5.4% | intergenic (+4068/–) | ampR → / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006881 | 245181 | 246109 | 929 | 13 [11] | [11] 14 | [U712_01140]–[U712_01145] | [U712_01140],[U712_01145] |
| * | * | ÷ | CP006881 | 1067445 | 1068659 | 1215 | 14 [12] | [12] 17 | U712_05250 | U712_05250 |
| * | * | ÷ | CP006881 | 1149056 | 1150715 | 1660 | 13 [9] | [10] 14 | U712_05685 | U712_05685 |
| * | * | ÷ | CP006881 | 1503064 | 1504637 | 1574 | 13 [4] | [12] 13 | [U712_07740] | [U712_07740] |
| * | * | ÷ | CP006881 | 1562277 | 1566638 | 4362 | 13 [12] | [12] 14 | U712_08060 | U712_08060 |
| * | * | ÷ | CP006881 | 2261295 | 2262055 | 761 | 15 [10] | [11] 13 | [U712_11400] | [U712_11400] |
| * | * | ÷ | CP006881 | 3303150–3303322 | 3304612 | 1291–1463 | 14 [11] | [1] 48 | [U712_16990]–[U712_16995] | [U712_16990],[U712_16995] |
| * | * | ÷ | CP006881 | 3725699 | 3728128 | 2430 | 15 [4] | [9] 13 | [U712_19210] | [U712_19210] |
| * | * | ÷ | CP006881 | 3757683 | 3759671 | 1989 | 14 [12] | [12] 14 | U712_19375 | U712_19375 |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | 3304613 = | 1 (0.020) | 26 (0.030) +50 bp |
18/132 | NT | 5.1% | intergenic (+1/+48) | U712_16995/U712_17000 | Arabinose metabolism transcriptional repressor/Uncharacterized protein yvbT |
| ? | pSIJ663_pHT315_araE_xy | 9781 = | 1704 (0.630) | intergenic (+5050/–) | ampR/– | –/– | |||||