breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 9,907 A→C 6.1% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 6.1% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 18,678 A→G 6.2% intergenic (+23/‑37) nhaA → / → nhaR sodium‑proton antiporter/transcriptional activator of nhaA
RA 18,680 A→T 6.2% intergenic (+25/‑35) nhaA → / → nhaR sodium‑proton antiporter/transcriptional activator of nhaA
RA 18,681 A→T 6.0% intergenic (+26/‑34) nhaA → / → nhaR sodium‑proton antiporter/transcriptional activator of nhaA
RA 18,683 C→T 6.0% intergenic (+28/‑32) nhaA → / → nhaR sodium‑proton antiporter/transcriptional activator of nhaA
RA 53,272 T→G 5.3% M49L (ATG→CTG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,275 C→A 5.1% A48S (GCG→TCG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,279 C→T 5.2% R46R (CGG→CGA pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,376 G→A 5.0% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 58,228 T→G 6.9% intergenic (+49/‑246) djlA → / → yabP membrane‑anchored DnaK co‑chaperone, DNA‑binding protein/pseudogene, pentapeptide repeats‑containing
RA 83,587 A→C 9.7% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 9.7% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 87,881 A→G 6.2% intergenic (+33/‑147) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,884 T→A 5.2% intergenic (+36/‑144) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,887 C→T 6.3% intergenic (+39/‑141) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 100,158 C→T 5.8% P172L (CCG→CTG)  murG → N‑acetylglucosaminyl transferase
RA 106,831 T→A 9.0% I92N (ATT→AAT)  lpxC → UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase
RA 111,013 G→A 10.5% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 111,016 T→C 9.0% intergenic (+32/‑28) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 120,964 C→T 5.4% L196L (CTG→CTA aroP ← aromatic amino acid transporter
RA 120,967 G→A 5.5% F195F (TTC→TTT aroP ← aromatic amino acid transporter
RA 164,557 G→C 5.7% intergenic (+23/‑173) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,558 T→A 5.7% intergenic (+24/‑172) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,620 C→T 10.0% intergenic (+86/‑110) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,621 A→G 10.0% intergenic (+87/‑109) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 192,573:1 +G 7.8% coding (719/726 nt) pyrH → uridylate kinase
RA 192,579 A→T 7.7% *242L (TAA→TTA)  pyrH → uridylate kinase
RA 207,483 A→C 6.4% V786V (GTA→GTC dnaE → DNA polymerase III alpha subunit
RA 207,486 G→T 5.6% M787I (ATG→ATT dnaE → DNA polymerase III alpha subunit
RA 208,552 T→A 7.6% L1143I (TTA→ATA)  dnaE → DNA polymerase III alpha subunit
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 285,882 T→G 6.3% I163S (ATC→AGC)  yagG → CP4‑6 prophage; putative sugar transporter
RA 285,887 C→A 6.4% L165M (CTG→ATG)  yagG → CP4‑6 prophage; putative sugar transporter
RA 289,256 G→C 5.7% intergenic (‑94/+45) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 289,257 T→A 5.9% intergenic (‑95/+44) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 292,302 C→G 7.1% intergenic (+71/+20) yagJ → / ← yagK CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
RA 298,399 C→T 5.5% V110I (GTT→ATT)  paoD ← moco insertion factor for PaoABC aldehyde oxidoreductase
RA 314,255 T→C 8.9% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 314,258 G→A 9.3% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 327,213 G→C 6.3% S12* (TCA→TGA)  betA ← choline dehydrogenase, a flavoprotein
RA 336,866 G→C 5.9% G30A (GGC→GCC)  yahF → putative NAD(P)‑binding succinyl‑CoA synthase
RA 373,332 C→G 5.7% P138A (CCA→GCA) ‡ mhpF → acetaldehyde‑CoA dehydrogenase II, NAD‑binding
RA 373,333 C→G 5.7% P138R (CCA→CGA) ‡ mhpF → acetaldehyde‑CoA dehydrogenase II, NAD‑binding
RA 383,897 C→T 8.9% M13I (ATG→ATA) ‡ yaiP ← putative family 2 glycosyltransferase
RA 383,898 A→G 7.7% M13T (ATG→ACG) ‡ yaiP ← putative family 2 glycosyltransferase
RA 385,724 T→A 6.4% W165R (TGG→AGG)  tauA → taurine ABC transporter periplasmic binding protein
RA 402,127 A→G 5.4% S127S (TCA→TCG phoA → bacterial alkaline phosphatase
RA 403,182 T→A 5.0% intergenic (+20/‑99) phoA → / → psiF bacterial alkaline phosphatase/PsiF family protein
RA 403,183 T→A 5.3% intergenic (+21/‑98) phoA → / → psiF bacterial alkaline phosphatase/PsiF family protein
RA 403,187 G→A 6.3% intergenic (+25/‑94) phoA → / → psiF bacterial alkaline phosphatase/PsiF family protein
RA 443,022 G→A 14.7% intergenic (+25/+29) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 443,023 T→C 14.9% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 464,354 C→A 9.1% intergenic (+46/‑48) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,356 A→T 9.1% intergenic (+48/‑46) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,358 T→G 8.8% intergenic (+50/‑44) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 473,176 A→G 5.5% T71A (ACG→GCG)  amtB → ammonium transporter
RA 475,971 C→G 12.0% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 12.0% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 508,748 C→A 5.3% intergenic (+189/+127) ybaQ → / ← copA putative DNA‑binding transcriptional regulator/copper transporter
RA 508,754 T→G 5.4% intergenic (+195/+121) ybaQ → / ← copA putative DNA‑binding transcriptional regulator/copper transporter
RA 543,091 G→C 8.7% intergenic (+58/+170) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,094 G→C 8.6% intergenic (+61/+167) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 569,160 G→T 7.4% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 6.6% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 595,519 T→A 7.9% intergenic (‑76/‑81) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 595,520 T→A 7.9% intergenic (‑77/‑80) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 603,391 C→G 8.8% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 8.5% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 8.7% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 705,916 T→C 7.0% intergenic (+26/‑177) nagE → / → glnS N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
RA 705,917 G→A 6.9% intergenic (+27/‑176) nagE → / → glnS N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase
RA 707,926 G→T 6.6% intergenic (+169/‑408) glnS → / → chiP glutamyl‑tRNA synthetase/chitoporin, uptake of chitosugars
RA 710,170 C→T 8.0% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 7.9% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 713,195 G→A 9.8% R70H (CGC→CAC)  seqA → negative modulator of initiation of replication
RA 713,200 A→T 9.6% M72L (ATG→TTG)  seqA → negative modulator of initiation of replication
RA 713,205 T→C 9.4% R73R (CGT→CGC seqA → negative modulator of initiation of replication
RA 756,643 T→A 8.1% I246N (ATT→AAT)  sdhA → succinate dehydrogenase, flavoprotein subunit
RA 770,679 G→T 9.5% intergenic (+68/‑779) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 770,682 A→C 9.0% intergenic (+71/‑776) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 774,356 C→G 8.0% P16P (CCC→CCG ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 774,358 T→A 7.9% L17Q (CTG→CAG)  ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 781,668 C→T 6.0% intergenic (+16/‑417) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,670 A→T 6.0% intergenic (+18/‑415) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,672 A→G 6.0% intergenic (+20/‑413) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 786,613 C→A 7.1% A327A (GCC→GCA aroG → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible
RA 786,614 T→G 6.9% C328G (TGC→GGC)  aroG → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible
RA 787,780 A→G 6.8% intergenic (‑185/+17) gpmA ← / ← galM phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase
RA 787,782 G→C 7.0% intergenic (‑187/+15) gpmA ← / ← galM phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase
RA 787,784 C→T 7.0% intergenic (‑189/+13) gpmA ← / ← galM phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase
RA 790,931 C→G 9.5% W33C (TGG→TGC galT ← galactose‑1‑phosphate uridylyltransferase
RA 832,371 T→A 6.1% intergenic (+135/+97) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,372 T→A 6.1% intergenic (+136/+96) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,378 G→T 6.6% intergenic (+142/+90) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,379 C→T 6.5% intergenic (+143/+89) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 850,993 T→C 9.4% intergenic (+28/+21) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,995 T→G 9.4% intergenic (+30/+19) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,996 C→A 9.3% intergenic (+31/+18) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,998 G→A 9.3% intergenic (+33/+16) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 857,576 T→C 7.6% intergenic (+21/+220) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,578 C→G 7.5% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 7.5% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 867,717 G→C 7.5% L66F (TTG→TTC gsiA → glutathione ABC transporter ATPase
RA 867,718 G→C 7.5% E67Q (GAA→CAA)  gsiA → glutathione ABC transporter ATPase
RA 887,392 T→A 5.7% intergenic (‑53/‑31) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 887,393 T→A 5.6% intergenic (‑54/‑30) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 892,455 G→C 12.5% V163V (GTG→GTC rimK → ribosomal protein S6 modification protein
RA 892,457 T→A 12.6% I164N (ATT→AAT)  rimK → ribosomal protein S6 modification protein
RA 892,459 G→C 12.7% D165H (GAC→CAC)  rimK → ribosomal protein S6 modification protein
RA 899,656 T→C 7.3% intergenic (+11/+188) rlmC → / ← artJ 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA 915,080 G→C 11.9% intergenic (‑223/+272) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 915,081 G→C 11.9% intergenic (‑224/+271) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 922,314:1 +C 11.1% intergenic (+21/+52) macB → / ← cspD macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA 940,751 T→C 10.2% intergenic (+31/‑208) serS → / → dmsA seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A
RA 940,754 G→A 10.5% intergenic (+34/‑205) serS → / → dmsA seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A
RA 958,769 C→G 8.5% intergenic (+28/‑43) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,771 A→T 8.5% intergenic (+30/‑41) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,773 C→G 8.5% intergenic (+32/‑39) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 975,700 G→T 5.3% D27Y (GAC→TAC) ‡ mukE → chromosome condensin MukBEF, MukE localization factor
RA 975,701 A→C 5.5% D27A (GAC→GCC) ‡ mukE → chromosome condensin MukBEF, MukE localization factor
RA 986,410 A→C 6.5% S191S (TCT→TCG) ‡ ompF ← outer membrane porin 1a (Ia;b;F)
RA 986,411 G→T 5.4% S191Y (TCT→TAT) ‡ ompF ← outer membrane porin 1a (Ia;b;F)
RA 987,560 G→C 7.9% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 8.0% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 993,254 A→G 6.8% intergenic (+20/+23) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,255 A→C 6.7% intergenic (+21/+22) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,258 G→T 6.8% intergenic (+24/+19) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 993,259 C→T 7.1% intergenic (+25/+18) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 1,004,741 T→G 5.2% intergenic (+84/‑27) ycbF → / → pyrD putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked
RA 1,004,746 C→A 5.3% intergenic (+89/‑22) ycbF → / → pyrD putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked
RA 1,015,912 T→A 5.6% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,018,983 A→T 9.7% intergenic (+46/+30) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,018,986 A→T 8.5% intergenic (+49/+27) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,041,937 T→G 7.0% intergenic (+22/+93) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,041,940 C→A 6.1% intergenic (+25/+90) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,048,429 C→T 6.5% W88* (TGG→TAG) ‡ gfcC ← putative O‑antigen capsule production periplasmic protein
RA 1,048,430 A→G 6.5% W88R (TGG→CGG) ‡ gfcC ← putative O‑antigen capsule production periplasmic protein
RA 1,052,257 C→T 10.9% intergenic (+17/+32) gnsA → / ← yccM putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA 1,052,260 T→C 10.4% intergenic (+20/+29) gnsA → / ← yccM putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA 1,052,261 G→A 10.5% intergenic (+21/+28) gnsA → / ← yccM putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA 1,052,264 A→G 10.4% intergenic (+24/+25) gnsA → / ← yccM putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA 1,075,515 G→T 6.1% A1123E (GCG→GAG)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,075,518 A→C 6.0% L1122R (CTC→CGC)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,113,544 G→A 5.7% intergenic (+138/‑35) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,546 T→A 5.9% intergenic (+140/‑33) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,548 T→C 5.8% intergenic (+142/‑31) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,129,394 G→C 9.6% intergenic (+20/+20) murJ → / ← flgN putative lipid II flippase/export chaperone for FlgK and FlgL
RA 1,138,428 G→C 5.2% A17A (GCG→GCC flgK → flagellar hook‑filament junction protein 1
RA 1,141,148 C→T 7.0% intergenic (+162/+34) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,150 G→A 7.0% intergenic (+164/+32) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,151 T→C 7.0% intergenic (+165/+31) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,153 A→G 7.0% intergenic (+167/+29) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,147,980 G→T 7.1% K120N (AAG→AAT plsX → putative phosphate acyltransferase
RA 1,147,986 G→C 7.0% L122L (CTG→CTC plsX → putative phosphate acyltransferase
RA 1,147,987 G→C 7.2% E123Q (GAG→CAG)  plsX → putative phosphate acyltransferase
RA 1,147,993 A→C 9.3% I125L (ATT→CTT)  plsX → putative phosphate acyltransferase
RA 1,151,280 T→A 5.7% V204D (GTT→GAT) ‡ fabG → 3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA 1,151,281 T→A 5.7% V204V (GTT→GTA) ‡ fabG → 3‑oxoacyl‑[acyl‑carrier‑protein] reductase
RA 1,151,873 T→A 6.2% intergenic (+22/‑66) acpP → / → fabF acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II
RA 1,151,874 T→A 6.2% intergenic (+23/‑65) acpP → / → fabF acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II
RA 1,155,575 G→A 7.0% R151H (CGT→CAT)  tmk → thymidylate kinase
RA 1,159,335 G→T 8.2% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 8.0% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,169,380 T→C 10.0% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 10.0% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 9.9% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,174,077 G→A 9.6% intergenic (‑113/+15) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,174,080 T→C 9.5% intergenic (‑116/+12) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,196,803 A→C 5.9% intergenic (+430/+64) icd → / ← ymfD isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase
RA 1,211,610 A→G 5.9% intergenic (+33/+70) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,612 A→T 6.2% intergenic (+35/+68) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,614 C→T 6.2% intergenic (+37/+66) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,226,832 T→G 7.6% F78C (TTT→TGT)  ycgJ → uncharacterized protein
RA 1,226,835 C→A 6.9% T79K (ACA→AAA)  ycgJ → uncharacterized protein
RA 1,227,051 G→C 8.2% intergenic (+83/+20) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,227,052 A→T 8.2% intergenic (+84/+19) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,227,053 G→C 8.2% intergenic (+85/+18) ycgJ → / ← pliG uncharacterized protein/periplasmic inhibitor of g‑type lysozyme
RA 1,248,064 T→A 5.4% K351* (AAA→TAA)  dhaM ← putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components
RA 1,260,904 A→G 6.7% intergenic (‑101/+24) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
JC JC 1,293,196 IS5 (–) +4 bp 5.3% intergenic (‑274/‑328) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
MC JC 1,299,499 Δ1,199 bp 100% intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA 1,306,787 G→A 7.5% intergenic (+19/+34) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,306,788 T→C 7.8% intergenic (+20/+33) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,311,830 A→G 10.4% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 10.3% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,324,837 A→C 6.3% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 5.8% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 6.0% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,335,681 T→C 6.8% intergenic (+223/‑150) yciX → / → acnA uncharacterized protein/aconitate hydratase 1; aconitase A
RA 1,335,684 G→A 7.0% intergenic (+226/‑147) yciX → / → acnA uncharacterized protein/aconitate hydratase 1; aconitase A
RA 1,344,033 A→G 12.6% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 12.7% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 12.8% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,375,064 C→T 6.1% G34G (GGC→GGT ycjQ → putative Zn‑dependent NAD(P)‑binding oxidoreductase
RA 1,375,067 A→G 6.9% A35A (GCA→GCG ycjQ → putative Zn‑dependent NAD(P)‑binding oxidoreductase
RA 1,381,918 A→C 5.2% intergenic (+16/‑29) ycjV → / → ompG pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G
RA 1,410,986 A→G 6.9% intergenic (+102/+27) dbpA → / ← ttcA ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA 1,410,990 T→A 6.7% intergenic (+106/+23) dbpA → / ← ttcA ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA 1,410,991 T→A 6.7% intergenic (+107/+22) dbpA → / ← ttcA ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA 1,410,995 C→T 6.5% intergenic (+111/+18) dbpA → / ← ttcA ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein
RA 1,413,029 G→C 6.8% S69R (AGC→AGG) ‡ intR ← Rac prophage; integrase
RA 1,413,031 T→A 6.9% S69C (AGC→TGC) ‡ intR ← Rac prophage; integrase
RA 1,413,033 G→C 7.1% S68C (TCC→TGC)  intR ← Rac prophage; integrase
RA 1,449,050 T→A 11.6% intergenic (+32/+26) feaB → / ← tynA phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA 1,456,819 T→A 8.1% I130I (ATT→ATA paaE → ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
RA 1,498,892 A→T 11.8% intergenic (+17/‑46) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,894 C→G 11.8% intergenic (+19/‑44) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,896 A→T 11.8% intergenic (+21/‑42) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,499,361 A→G 5.3% N142D (AAC→GAC)  rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,499,365 A→T 5.1% Q143L (CAG→CTG)  rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,499,369 C→T 5.0% V144V (GTC→GTT rimL → ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,511,139 G→C 7.3% W379C (TGG→TGC ydcR → putative DNA‑binding transcriptional regulator and putative aminotransferase
RA 1,557,343 C→T 6.2% T232T (ACG→ACA) ‡ ddpF ← D,D‑dipeptide ABC transporter ATPase
RA 1,557,345 T→A 6.1% T232S (ACG→TCG) ‡ ddpF ← D,D‑dipeptide ABC transporter ATPase
RA 1,557,347 A→G 6.3% L231P (CTG→CCG)  ddpF ← D,D‑dipeptide ABC transporter ATPase
RA 1,567,466 G→C 8.8% intergenic (‑326/+38) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,467 G→T 8.8% intergenic (‑327/+37) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,469 A→T 8.8% intergenic (‑329/+35) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,471 A→C 7.9% intergenic (‑331/+33) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,567,472 G→C 8.6% intergenic (‑332/+32) dosC ← / ← yddW diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog
RA 1,579,563 G→T 8.1% intergenic (‑221/+70) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,564 G→A 8.1% intergenic (‑222/+69) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,569 T→C 8.1% intergenic (‑227/+64) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,579,570 A→C 8.3% intergenic (‑228/+63) yddA ← / ← ydeM putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme
RA 1,642,370 C→G 8.5% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 8.3% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,660,198 T→A 5.0% A710A (GCT→GCA ynfE → putative selenate reductase, periplasmic
RA 1,660,446 C→T 6.5% A793V (GCG→GTG)  ynfE → putative selenate reductase, periplasmic
RA 1,674,171 Δ1 bp 5.8% coding (259/1035 nt) tqsA → pheromone AI‑2 transporter
RA 1,674,177 G→T 5.2% E89* (GAG→TAG) ‡ tqsA → pheromone AI‑2 transporter
RA 1,674,178 A→C 5.3% E89A (GAG→GCG) ‡ tqsA → pheromone AI‑2 transporter
RA 1,685,527 A→G 100% G354G (GGT→GGC fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,703,251 A→T 8.8% intergenic (+17/+17) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,703,252 A→T 8.6% intergenic (+18/+16) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,712,337 A→T 7.9% intergenic (+179/‑432) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,712,338 A→T 7.9% intergenic (+180/‑431) nth → / → dtpA DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A
RA 1,736,097 T→A 7.9% intergenic (+138/+24) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,736,100 T→A 7.7% intergenic (+141/+21) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,764,687 T→C 11.4% intergenic (‑301/+26) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown
RA 1,764,692:1 +T 6.5% intergenic (‑306/+21) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown
RA 1,764,695 Δ1 bp 6.1% intergenic (‑309/+18) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown
RA 1,764,701 G→A 10.6% intergenic (‑315/+12) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown
RA 1,789,082 G→T 6.1% Q216H (CAG→CAT aroH → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
RA 1,789,083 A→C 5.9% M217L (ATG→CTG)  aroH → 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible
RA 1,792,240 T→A 7.2% intergenic (‑220/+27) ydiV ← / ← nlpC anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA 1,792,241 A→T 7.8% intergenic (‑221/+26) ydiV ← / ← nlpC anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA 1,792,242 T→A 7.8% intergenic (‑222/+25) ydiV ← / ← nlpC anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein
RA 1,799,370 Δ1 bp 6.7% intergenic (‑100/+23) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,799,374:1 +T 6.7% intergenic (‑104/+19) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,801,371 A→G 7.1% C400C (TGT→TGC) ‡ thrS ← threonyl‑tRNA synthetase
RA 1,801,372 C→T 7.1% C400Y (TGT→TAT) ‡ thrS ← threonyl‑tRNA synthetase
RA 1,865,682 G→C 9.9% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,928,799 A→C 5.0% L14R (CTT→CGT)  ptrB ← protease II
RA 1,928,802 G→T 5.4% T13K (ACG→AAG)  ptrB ← protease II
RA 1,954,256 T→A 7.3% I272N (ATT→AAT)  cmoB → tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,985,112 C→G 10.3% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,987,858 G→C 5.7% intergenic (‑100/+15) yecJ ← / ← azuC DUF2766 family protein/acid‑inducible small membrane‑associated protein
RA 1,992,083 G→C 8.4% noncoding (35/76 nt) glyW ← tRNA‑Gly
RA 1,999,231 T→A 7.6% T84S (ACT→TCT)  dcyD ← D‑cysteine desulfhydrase, PLP‑dependent
RA 2,028,158 G→C 9.2% intergenic (‑141/+30) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,159 T→A 8.1% intergenic (‑142/+29) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,160 G→C 8.1% intergenic (‑143/+28) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,044,721 G→A 7.4% intergenic (+97/‑217) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,074,691 C→G 6.0% intergenic (+33/‑88) flu → / → yeeR CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein
RA 2,079,004 G→C 7.4% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,081,688 A→T 5.6% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,089,196 T→A 6.1% intergenic (‑68/+15) yeeZ ← / ← yoeB putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system
RA 2,089,197 A→T 6.2% intergenic (‑69/+14) yeeZ ← / ← yoeB putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system
RA 2,089,198 T→A 5.3% intergenic (‑70/+13) yeeZ ← / ← yoeB putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system
RA 2,090,122 A→G 11.5% intergenic (+76/‑70) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,124 C→G 11.2% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,126 C→T 11.2% intergenic (+80/‑66) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,115,847 G→T 9.0% A17E (GCG→GAG)  wcaM ← colanic acid biosynthesis protein
RA 2,115,849 C→G 8.8% S16S (TCG→TCC) ‡ wcaM ← colanic acid biosynthesis protein
RA 2,115,851 A→C 8.8% S16A (TCG→GCG) ‡ wcaM ← colanic acid biosynthesis protein
RA 2,142,505 G→C 7.1% R148R (CGC→CGG udk ← uridine/cytidine kinase
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,153,792 T→G 5.9% intergenic (+13/‑224) sibB → / → mdtA sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA 2,153,793 C→G 5.8% intergenic (+14/‑223) sibB → / → mdtA sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA 2,153,794 C→A 5.7% intergenic (+15/‑222) sibB → / → mdtA sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A
RA 2,169,671 T→G 5.5% intergenic (+60/+22) yegS → / ← gatR phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA 2,169,672 T→C 5.5% intergenic (+61/+21) yegS → / ← gatR phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,183,934 C→T 10.6% E195K (GAA→AAA)  thiD ← hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase
RA 2,183,939 T→G 11.8% E193A (GAG→GCG)  thiD ← hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase
RA 2,183,942 C→A 10.4% R192L (CGC→CTC)  thiD ← hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase
RA 2,183,947 A→G 10.9% F190F (TTT→TTC thiD ← hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase
RA 2,252,803 G→A 7.3% intergenic (+15/+92) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,804 C→A 7.3% intergenic (+16/+91) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,810 T→G 6.9% intergenic (+22/+85) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,812 A→T 6.9% intergenic (+24/+83) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,252,814 C→A 7.4% intergenic (+26/+81) yeiI → / ← nupX putative kinase/nucleoside permease
RA 2,270,602 T→C 6.1% intergenic (+57/‑124) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,273,242 C→T 5.5% Y293Y (TAC→TAT yejA → microcin C ABC transporter periplasmic binding protein
RA 2,282,830 T→C 6.2% intergenic (+29/+110) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,831 C→G 6.3% intergenic (+30/+109) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,832 C→G 6.6% intergenic (+31/+108) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,833 G→A 6.8% intergenic (+32/+107) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,286,311 C→G 14.3% intergenic (+24/+79) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,313 T→A 14.3% intergenic (+26/+77) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,315 C→G 14.5% intergenic (+28/+75) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,302,452 A→C 6.3% L101R (CTG→CGG)  napA ← nitrate reductase, periplasmic, large subunit
RA 2,302,455 G→T 7.5% P100Q (CCG→CAG)  napA ← nitrate reductase, periplasmic, large subunit
RA 2,311,616 C→T 8.0% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 8.9% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,318,095 C→G 100% L594F (TTG→TTC rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,367,637 T→G 5.5% N189K (AAT→AAG arnC → undecaprenyl phosphate‑L‑Ara4FN transferase
RA 2,367,640 C→A 5.3% I190I (ATC→ATA arnC → undecaprenyl phosphate‑L‑Ara4FN transferase
RA 2,383,956 A→T 12.2% intergenic (+32/+39) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,383,959 A→T 11.8% intergenic (+35/+36) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,390,012 Δ1 bp 8.9% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,016:1 +C 9.0% intergenic (+52/+32) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,414,689 C→G 5.7% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,430,144 G→C 8.5% A32G (GCC→GGC)  purF ← amidophosphoribosyltransferase
RA 2,432,985 A→G 9.3% intergenic (‑43/+27) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,434,094 G→A 5.6% R216R (CGC→CGT dedA ← DedA family inner membrane protein
RA 2,434,097 T→C 5.7% A215A (GCA→GCG dedA ← DedA family inner membrane protein
RA 2,439,388 T→C 7.7% S245G (AGC→GGC)  yfcJ ← putative arabinose efflux transporter
RA 2,439,389 G→A 6.3% A244A (GCC→GCT yfcJ ← putative arabinose efflux transporter
RA 2,474,878 T→C 11.2% intergenic (+22/‑106) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,474,881 G→A 11.9% intergenic (+25/‑103) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,511,417 A→G 8.4% intergenic (+90/+51) ypeC → / ← mntH DUF2502 family putative periplasmic protein/manganese/divalent cation transporter
RA 2,511,418 A→C 8.4% intergenic (+91/+50) ypeC → / ← mntH DUF2502 family putative periplasmic protein/manganese/divalent cation transporter
RA 2,511,424 T→A 7.5% intergenic (+97/+44) ypeC → / ← mntH DUF2502 family putative periplasmic protein/manganese/divalent cation transporter
RA 2,511,425 T→A 7.8% intergenic (+98/+43) ypeC → / ← mntH DUF2502 family putative periplasmic protein/manganese/divalent cation transporter
RA 2,521,344 C→T 8.8% intergenic (+16/+249) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,346 A→T 9.3% intergenic (+18/+247) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,348 A→G 9.3% intergenic (+20/+245) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,525,907 G→A 7.4% intergenic (+16/+23) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,525,908 C→G 7.0% intergenic (+17/+22) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,536,370 C→G 9.7% intergenic (+27/+16) crr → / ← pdxK glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase
RA 2,536,373 C→G 8.0% intergenic (+30/+13) crr → / ← pdxK glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase
RA 2,549,556 C→G 5.2% intergenic (+150/+90) yfeW → / ← yfeX penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic
RA 2,564,635 G→C 5.0% R38P (CGC→CCC)  yffS → CPZ‑55 prophage; uncharacterized protein
RA 2,564,640 G→C 5.3% G40R (GGA→CGA)  yffS → CPZ‑55 prophage; uncharacterized protein
RA 2,566,266 C→A 7.8% G207C (GGC→TGC)  eutA ← reactivating factor for ethanolamine ammonia lyase
RA 2,566,267 T→G 8.1% A206A (GCA→GCC eutA ← reactivating factor for ethanolamine ammonia lyase
RA 2,590,767 T→C 5.1% intergenic (+59/+40) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,590,771 C→G 5.1% intergenic (+63/+36) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,590,775 G→A 6.5% intergenic (+67/+32) acrD → / ← ypfM aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein
RA 2,638,584 A→T 8.3% F23L (TTT→TTA bamB ← BamABCDE complex OM biogenesis lipoprotein
RA 2,653,367 G→A 13.0% intergenic (+28/‑488) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,653,372 T→C 12.1% intergenic (+33/‑483) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,691,169 A→T 5.7% noncoding (172/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,171 T→A 5.3% noncoding (170/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,173 A→T 5.4% noncoding (168/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,704,304 A→G 14.9% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 15.0% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 15.0% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,707,320 A→T 8.1% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 8.1% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,716,030 T→G 9.1% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 8.9% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,724,095 C→A 6.2% intergenic (+13/‑33) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,724,097 T→A 6.2% intergenic (+15/‑31) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,724,099 T→G 6.2% intergenic (+17/‑29) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,731,073 A→T 7.2% noncoding (85/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,731,074 A→T 7.0% noncoding (84/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,737,703 A→G 7.3% intergenic (+57/‑42) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,737,705 A→T 6.5% intergenic (+59/‑40) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,737,707 C→T 6.4% intergenic (+61/‑38) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,737,711 G→A 7.6% intergenic (+65/‑34) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,761,623 C→A 5.5% V640L (GTA→TTA)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,801,056 A→T 10.7% N31I (AAT→ATT)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,807,091 T→C 7.1% intergenic (+17/‑41) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,807,093 A→T 7.2% intergenic (+19/‑39) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,807,095 G→A 7.3% intergenic (+21/‑37) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,810,872 C→T 8.6% H35Y (CAC→TAC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,873 A→G 8.6% H35R (CAC→CGC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,811,101 G→A 5.2% R111H (CGC→CAC)  mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,817,977 A→T 7.2% intergenic (‑117/+82) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,817,978 A→T 5.7% intergenic (‑118/+81) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,838,231 A→T 8.3% intergenic (‑126/+23) hydN ← / ← ascG formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor
RA 2,849,945 A→T 6.3% intergenic (‑96/+29) hycB ← / ← hycA hydrogenase 3, Fe‑S subunit/regulator of the transcriptional regulator FhlA
RA 2,860,738 A→T 5.1% I166N (ATT→AAT)  ygbI ← DeoR family putative transcriptional regulator
RA 2,860,740 C→G 5.3% M165I (ATG→ATC ygbI ← DeoR family putative transcriptional regulator
RA 2,866,487 G→C 10.9% intergenic (+22/+72) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,866,488 G→C 10.9% intergenic (+23/+71) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,873,915 A→G 7.1% H26H (CAT→CAC) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,917 G→C 7.2% H26D (CAT→GAT) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,919 C→T 5.8% G25D (GGT→GAT)  cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,902,494 G→T 5.1% G200V (GGA→GTA)  ygcE → putative kinase
RA 2,906,607 C→T 12.9% intergenic (+24/+36) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,608 G→C 20.2% intergenic (+25/+35) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,609 G→C 13.0% intergenic (+26/+34) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,907,998 A→T 6.2% intergenic (‑57/+31) eno ← / ← pyrG enolase/CTP synthetase
RA 2,961,248 A→T 5.3% L394Q (CTG→CAG)  recC ← exonuclease V (RecBCD complex), gamma chain
RA 2,961,251 A→T 5.3% L393Q (CTG→CAG)  recC ← exonuclease V (RecBCD complex), gamma chain
RA 2,972,652 A→T 6.1% intergenic (+15/+17) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 2,972,653 A→T 6.1% intergenic (+16/+16) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 2,976,320 T→G 5.4% noncoding (66/82 nt) omrB ← sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA 2,976,321 C→A 7.6% noncoding (65/82 nt) omrB ← sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent
RA 2,983,573 C→T 6.2% L184L (CTG→CTA) ‡ kduI ← hexuronate isomerase
RA 2,983,574 A→G 5.9% L184P (CTG→CCG) ‡ kduI ← hexuronate isomerase
RA 3,007,466 T→C 7.7% intergenic (+14/‑44) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,007,473 G→A 7.4% intergenic (+21/‑37) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,020,510 G→T 12.5% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 12.5% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 13.7% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,033,624 A→G 6.2% intergenic (+11/+33) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,627 T→A 6.4% intergenic (+14/+30) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,628 T→A 6.4% intergenic (+15/+29) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,631 C→T 6.3% intergenic (+18/+26) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,035,479 G→A 5.7% T268I (ACC→ATC) ‡ prfB ← peptide chain release factor RF‑2
RA 3,035,480 T→C 5.5% T268A (ACC→GCC) ‡ prfB ← peptide chain release factor RF‑2
RA 3,046,070 T→G 6.0% intergenic (‑169/+98) ygfF ← / ← gcvP putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA 3,046,075 A→T 5.7% intergenic (‑174/+93) ygfF ← / ← gcvP putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA 3,046,076 A→T 5.7% intergenic (‑175/+92) ygfF ← / ← gcvP putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA 3,046,077 A→T 5.7% intergenic (‑176/+91) ygfF ← / ← gcvP putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA 3,046,082 C→A 5.7% intergenic (‑181/+86) ygfF ← / ← gcvP putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex
RA 3,059,703 A→T 6.1% intergenic (‑2/‑50) yqfE ← / → argP pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA 3,059,704 A→T 6.2% intergenic (‑3/‑49) yqfE ← / → argP pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA 3,061,817 G→C 10.4% W323S (TGG→TCG) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,061,818 G→C 10.4% W323C (TGG→TGC) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,067,320 A→T 7.3% intergenic (‑147/+20) ygfI ← / ← yggE putative DNA‑binding transcriptional regulator/oxidative stress defense protein
RA 3,101,655 T→A 9.4% intergenic (‑32/+152) yggN ← / ← yggL DUF2884 family putative periplasmic protein/DUF469 family protein
RA 3,101,656 T→A 9.2% intergenic (‑33/+151) yggN ← / ← yggL DUF2884 family putative periplasmic protein/DUF469 family protein
RA 3,114,881 A→C 6.0% L1411R (CTG→CGG) ‡ sslE ← putative secreted and surface‑associated lipoprotein mucinase
RA 3,114,882 G→T 6.2% L1411M (CTG→ATG) ‡ sslE ← putative secreted and surface‑associated lipoprotein mucinase
RA 3,135,356 T→C 5.2% Q339R (CAG→CGG) ‡ pitB ← phosphate transporter
RA 3,135,357 G→A 5.2% Q339* (CAG→TAG) ‡ pitB ← phosphate transporter
RA 3,139,691 T→G 5.5% intergenic (+98/+25) yghU → / ← hybG putative S‑transferase/hydrogenase 2 accessory protein
RA 3,139,692 T→C 5.5% intergenic (+99/+24) yghU → / ← hybG putative S‑transferase/hydrogenase 2 accessory protein
RA 3,140,351 C→T 5.1% R150H (CGC→CAC) ‡ hybE ← hydrogenase 2‑specific chaperone
RA 3,140,352 G→C 5.1% R150G (CGC→GGC) ‡ hybE ← hydrogenase 2‑specific chaperone
RA 3,140,353 A→G 6.2% R149R (CGT→CGC hybE ← hydrogenase 2‑specific chaperone
RA 3,156,590 C→A 10.5% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 10.4% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,171,852 C→T 9.7% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 10.3% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 10.3% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 12.3% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,180,505 G→T 11.0% E29* (GAG→TAG)  ygiC → ATP‑Grasp family ATPase
RA 3,227,836 T→C 5.1% L12L (CTT→CTC ygjJ → putative periplasmic protein
RA 3,239,609 T→G 11.9% intergenic (+64/‑335) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,610 C→G 11.5% intergenic (+65/‑334) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,611 C→A 11.5% intergenic (+66/‑333) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,271,825 T→A 8.1% intergenic (‑55/+42) garK ← / ← garR glycerate kinase I/tartronate semialdehyde reductase
RA 3,288,032 C→A 9.6% intergenic (+22/‑58) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,288,033 T→G 10.4% intergenic (+23/‑57) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,291,109 A→T 10.8% K766* (AAA→TAA) ‡ yraJ → putative outer membrane protein
RA 3,291,110 A→T 10.8% K766I (AAA→ATA) ‡ yraJ → putative outer membrane protein
RA 3,309,012 A→G 6.1% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,324,952 A→G 7.4% intergenic (‑41/+49) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,955 A→G 7.4% intergenic (‑44/+46) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,956 C→T 7.4% intergenic (‑45/+45) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,959 C→T 6.4% intergenic (‑48/+42) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,334,703 A→G 10.3% intergenic (+22/‑206) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,704 G→C 10.5% intergenic (+23/‑205) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,705 C→T 10.4% intergenic (+24/‑204) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,346,792 C→G 5.6% P72R (CCG→CGG)  ptsN → sugar‑specific enzyme IIA component of PTS
RA 3,388,284 A→T 5.0% A281A (GCT→GCA) ‡ aaeA ← p‑hydroxybenzoic acid efflux system component
RA 3,388,285 G→A 5.1% A281V (GCT→GTT) ‡ aaeA ← p‑hydroxybenzoic acid efflux system component
RA 3,400,846 A→T 9.9% I81N (ATC→AAC)  mreB ← cell wall structural complex MreBCD, actin‑like component MreB
RA 3,400,849 A→T 9.8% V80D (GTT→GAT)  mreB ← cell wall structural complex MreBCD, actin‑like component MreB
RA 3,400,855 T→A 8.4% D78V (GAC→GTC)  mreB ← cell wall structural complex MreBCD, actin‑like component MreB
RA 3,407,293 T→A 8.9% intergenic (+27/‑82) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,294 T→A 8.8% intergenic (+28/‑81) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,295 T→A 8.8% intergenic (+29/‑80) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,423,620 A→G 5.5% noncoding (36/76 nt) thrV ← tRNA‑Thr
RA 3,423,621 C→G 5.4% noncoding (35/76 nt) thrV ← tRNA‑Thr
RA 3,423,622 C→T 5.3% noncoding (34/76 nt) thrV ← tRNA‑Thr
RA 3,439,588 G→C 9.2% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 9.2% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,449,020 A→T 7.9% R50R (CGT→CGA rplP ← 50S ribosomal subunit protein L16
RA 3,477,878 T→A 8.3% intergenic (+20/+29) slyX → / ← slyD phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)
RA 3,486,217 A→C 5.9% Q33P (CAG→CCG) ‡ crp → cAMP‑activated global transcription factor, mediator of catabolite repression
RA 3,486,218 G→T 6.8% Q33H (CAG→CAT) ‡ crp → cAMP‑activated global transcription factor, mediator of catabolite repression
RA 3,503,970 G→A 5.2% intergenic (+18/‑82) frlD → / → frlR fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator
RA 3,503,971 C→G 5.2% intergenic (+19/‑81) frlD → / → frlR fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator
RA 3,505,785 A→T 7.5% I79N (ATT→AAT)  yhfS ← FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,522,779 T→A 5.2% intergenic (‑28/‑92) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,522,780 C→G 5.2% intergenic (‑29/‑91) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,544,689 A→T 7.0% R52R (CGT→CGA bioH ← pimeloyl‑ACP methyl ester carboxylesterase
RA 3,544,692 C→G 7.0% G51G (GGG→GGC) ‡ bioH ← pimeloyl‑ACP methyl ester carboxylesterase
RA 3,544,693 C→G 7.0% G51A (GGG→GCG) ‡ bioH ← pimeloyl‑ACP methyl ester carboxylesterase
RA 3,544,696 A→T 6.9% F50Y (TTC→TAC)  bioH ← pimeloyl‑ACP methyl ester carboxylesterase
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,566,210 A→T 6.4% G124G (GGT→GGA) ‡ glgP ← glycogen phosphorylase
RA 3,566,212 C→G 6.7% G124R (GGT→CGT) ‡ glgP ← glycogen phosphorylase
RA 3,566,215 T→A 6.7% N123Y (AAC→TAC)  glgP ← glycogen phosphorylase
RA 3,566,218 C→G 6.6% G122R (GGT→CGT)  glgP ← glycogen phosphorylase
RA 3,566,220 A→T 6.5% L121H (CTC→CAC)  glgP ← glycogen phosphorylase
RA 3,569,431 A→G 8.2% I630T (ATT→ACT)  glgX ← glycogen debranching enzyme
RA 3,569,436 G→A 7.5% H628H (CAC→CAT) ‡ glgX ← glycogen debranching enzyme
RA 3,569,437 T→C 7.5% H628R (CAC→CGC) ‡ glgX ← glycogen debranching enzyme
RA 3,569,442 C→T 7.2% E626E (GAG→GAA glgX ← glycogen debranching enzyme
RA 3,601,824 G→C 8.1% P88R (CCC→CGC) ‡ ftsX ← putative ABC transporter permease
RA 3,601,825 G→C 8.0% P88A (CCC→GCC) ‡ ftsX ← putative ABC transporter permease
RA 3,648,273 C→G 5.5% intergenic (+127/‑21) agrA → / → agrB inactive antisense sRNA/antisense sRNA antitoxin for the DinQ toxin
RA 3,657,599 T→A 16.8% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 16.8% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,603 T→A 16.9% intergenic (+36/+383) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,674,388 G→A 10.4% intergenic (+13/‑398) yhjD → / → yhjE inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein
RA 3,674,389 C→A 10.4% intergenic (+14/‑397) yhjD → / → yhjE inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein
RA 3,674,395 A→T 10.0% intergenic (+20/‑391) yhjD → / → yhjE inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein
RA 3,674,396 A→T 10.0% intergenic (+21/‑390) yhjD → / → yhjE inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein
RA 3,674,403 T→C 9.5% intergenic (+28/‑383) yhjD → / → yhjE inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein
RA 3,714,163:1 +T 7.3% coding (2232/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,714,168 Δ1 bp 7.3% coding (2227/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,720,294 T→C 6.5% intergenic (+33/+154) cspA → / ← hokA RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small
RA 3,774,207 C→T 7.7% intergenic (+13/‑217) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,214 C→T 7.7% intergenic (+20/‑210) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,215 A→G 7.7% intergenic (+21/‑209) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,222 A→G 7.3% intergenic (+28/‑202) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,781,051 C→G 6.2% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 8.3% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 8.3% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,794,970 G→C 5.6% M14I (ATG→ATC waaF → ADP‑heptose:LPS heptosyltransferase II
RA 3,794,973 G→C 5.7% M15I (ATG→ATC waaF → ADP‑heptose:LPS heptosyltransferase II
RA 3,798,234 A→T 5.3% intergenic (+27/+5) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
RA 3,798,235 A→T 5.3% intergenic (+28/+4) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis
RA 3,815,816 C→G 5.1% intergenic (‑48/+18) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
RA 3,815,819 C→G 5.3% intergenic (‑51/+15) pyrE ← / ← rph orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
RA 3,817,948 G→T 5.2% E63D (GAG→GAT dinD → DNA damage‑inducible protein
RA 3,832,800 C→A 5.1% A580S (GCG→TCG)  yicI ← putative alpha‑glucosidase
RA 3,844,985 C→A 7.0% A341D (GCC→GAC)  adeD → cryptic adenine deaminase
RA 3,844,994 T→G 8.2% V344G (GTC→GGC)  adeD → cryptic adenine deaminase
RA 3,857,696 G→C 7.7% P237A (CCA→GCA)  yidJ ← sulfatase/phosphatase superfamily protein
RA 3,869,523 G→A 6.3% L49L (CTG→CTA cbrA → colicin M resistance protein; FAD‑binding protein, putative oxidoreductase
RA 3,877,558 G→C 10.6% intergenic (‑93/+147) yidB ← / ← gyrB DUF937 family protein/DNA gyrase, subunit B
RA 3,900,542 A→T 8.3% I12I (ATT→ATA yieL ← putative xylanase
RA 3,900,545 A→T 8.5% A11A (GCT→GCA yieL ← putative xylanase
RA 3,906,826 T→C 9.8% intergenic (‑259/+27) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,828 A→T 9.6% intergenic (‑261/+25) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,906,830 G→A 9.6% intergenic (‑263/+23) bglG ← / ← phoU transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator
RA 3,915,375 G→C 5.0% intergenic (‑175/+178) glmU ← / ← atpC fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit
RA 3,920,796 T→C 6.7% A31A (GCA→GCG atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,920,809 G→A 6.7% P27L (CCG→CTG)  atpF ← F0 sector of membrane‑bound ATP synthase, subunit b
RA 3,923,717 G→A 6.4% intergenic (‑37/+27) rsmG ← / ← mnmG 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA 3,923,718 G→C 6.5% intergenic (‑38/+26) rsmG ← / ← mnmG 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA 3,923,719 G→C 6.4% intergenic (‑39/+25) rsmG ← / ← mnmG 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA 3,923,720 T→C 6.2% intergenic (‑40/+24) rsmG ← / ← mnmG 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34
RA 3,954,273 G→T 6.4% E266* (GAA→TAA) ‡ ilvD → dihydroxyacid dehydratase
RA 3,954,274 A→C 7.3% E266A (GAA→GCA) ‡ ilvD → dihydroxyacid dehydratase
RA 3,959,515 T→A 11.3% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,972,673 A→C 6.6% E51A (GAG→GCG) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,972,674 G→T 6.6% E51D (GAG→GAT) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,980,726 G→A 6.6% intergenic (+30/‑161) wecG → / → yifK UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
RA 3,980,727 T→C 6.4% intergenic (+31/‑160) wecG → / → yifK UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter
RA 3,982,373 A→T 5.2% intergenic (+101/‑2) yifK → / → argX putative APC family amino acid transporter/tRNA‑Arg
RA 3,990,679 T→G 6.8% S30R (AGC→CGC)  hemC ← hydroxymethylbilane synthase
RA 3,990,680 C→A 6.4% A29A (GCG→GCT hemC ← hydroxymethylbilane synthase
RA 3,991,334 T→A 8.7% I61N (ATT→AAT) ‡ cyaA → adenylate cyclase
RA 3,991,335 T→A 8.7% I61I (ATT→ATA) ‡ cyaA → adenylate cyclase
MC JC 3,993,337 Δ11 bp 100% coding (2185‑2195/2547 nt) cyaA → adenylate cyclase
RA 4,007,324 C→T 5.7% A487A (GCC→GCT recQ → ATP‑dependent DNA helicase
RA 4,015,333 A→T 7.3% intergenic (+19/+21) metE → / ← ysgA 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase
RA 4,017,216:1 +A 8.0% intergenic (+24/‑117) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,017,222 Δ1 bp 9.6% intergenic (+30/‑111) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,049,986 G→T 15.5% noncoding (88/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,049,989 A→C 12.2% noncoding (91/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,051,259 G→T 7.6% noncoding (224/245 nt) csrC → CsrC sRNA sequesters CsrA, a carbon flux regulator
RA 4,051,262 A→C 7.4% noncoding (227/245 nt) csrC → CsrC sRNA sequesters CsrA, a carbon flux regulator
RA 4,060,261 G→T 11.4% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 11.3% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,062,371 A→T 7.3% N42I (AAT→ATT)  yihN → MFS transporter family protein
RA 4,088,209 T→A 8.3% K549N (AAA→AAT frvR ← putative frv operon regulator; contains a PTS EIIA domain
RA 4,093,463 A→G 7.1% S270S (AGT→AGC rhaD ← rhamnulose‑1‑phosphate aldolase
RA 4,116,937 T→G 100% K96Q (AAG→CAG)  glpK ← glycerol kinase
RA 4,142,509 T→G 5.3% intergenic (‑288/‑21) frwA ← / → frwC putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS
RA 4,142,512 C→A 5.9% intergenic (‑291/‑18) frwA ← / → frwC putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS
RA 4,182,879 C→A 6.8% F545L (TTC→TTA rpoB → RNA polymerase, beta subunit
JC 4,186,107 (TCCGCTGGT)1→2 63.0% coding (758/4224 nt) rpoC → RNA polymerase, beta prime subunit
RA 4,196,164 G→C 5.7% intergenic (‑65/+168) thiC ← / ← rsd phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit
RA 4,196,168 G→C 6.0% intergenic (‑69/+164) thiC ← / ← rsd phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit
RA 4,245,111 C→A 6.1% intergenic (‑36/+118) malF ← / ← malE maltose transporter subunit/maltose transporter subunit
RA 4,261,358 T→A 8.2% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 8.2% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,277,223 A→T 7.2% I54N (ATT→AAT)  soxS ← superoxide response regulon transcriptional activator; autoregulator
RA 4,296,060 C→T 20.0% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,297,196 A→C 5.5% intergenic (‑71/+23) yjcO ← / ← fdhF Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit
RA 4,307,294 A→T 5.1% L169Q (CTG→CAG)  alsK ← D‑allose kinase
RA 4,307,298 G→A 5.1% P168S (CCC→TCC)  alsK ← D‑allose kinase
RA 4,314,233 A→T 8.9% intergenic (+36/+111) yjdP → / ← phnP putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA 4,317,977 A→G 5.4% intergenic (‑82/+29) phnL ← / ← phnK ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein
RA 4,317,978 A→C 5.4% intergenic (‑83/+28) phnL ← / ← phnK ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein
RA 4,317,984 T→A 5.5% intergenic (‑89/+22) phnL ← / ← phnK ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein
RA 4,317,985 T→A 5.4% intergenic (‑90/+21) phnL ← / ← phnK ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein
RA 4,326,341 T→C 6.4% intergenic (‑600/+58) yjdN ← / ← yjdM metalloprotein superfamily protein/zinc‑ribbon family protein
RA 4,332,868 G→T 7.1% R135R (CGC→CGA basS ← sensory histidine kinase in two‑component regulatory system with BasR
RA 4,332,871 A→C 7.2% S134R (AGT→AGG basS ← sensory histidine kinase in two‑component regulatory system with BasR
RA 4,335,654 T→A 7.8% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 7.8% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,353,171 C→G 5.4% intergenic (+90/+29) ghoT → / ← lysU toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA 4,356,445 A→T 7.1% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 7.1% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 12.3% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 12.4% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,365,452 G→T 5.5% intergenic (‑96/+20) cutA ← / ← dcuA divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter
RA 4,365,453 A→C 5.6% intergenic (‑97/+19) cutA ← / ← dcuA divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter
RA 4,366,854 T→G 11.1% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 11.3% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,373,273 A→G 5.1% intergenic (+111/+92) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,373,274 A→C 5.1% intergenic (+112/+91) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,373,280 T→A 5.1% intergenic (+118/+85) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,373,281 T→A 5.2% intergenic (+119/+84) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,373,287 G→T 5.3% intergenic (+125/+78) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,373,288 C→T 5.3% intergenic (+126/+77) yjeI → / ← yjeJ DUF4156 family lipoprotein/uncharacterized protein
RA 4,392,506 C→G 7.2% noncoding (35/76 nt) glyX → tRNA‑Gly
RA 4,424,465 G→T 7.2% intergenic (+79/+51) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,424,468 A→C 6.2% intergenic (+82/+48) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,439,845 T→A 5.5% intergenic (+52/+27) ytfK → / ← ytfL DUF1107 family protein/UPF0053 family inner membrane protein
RA 4,472,434 G→A 12.2% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 12.4% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,012 A→T 7.6% intergenic (+123/+22) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,016 G→C 7.8% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 8.1% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,489,858 G→A 5.9% A69V (GCA→GTA)  yjgR ← DUF853 family protein with NTPase fold
RA 4,496,511 A→G 5.1% intergenic (+22/‑164) leuX → / → intB tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA 4,496,512 C→T 5.1% intergenic (+23/‑163) leuX → / → intB tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA 4,498,222 A→T 12.5% intergenic (+282/‑50) intB → / → insC1 pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
RA 4,498,223 A→T 12.5% intergenic (+283/‑49) intB → / → insC1 pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
RA 4,520,500 Δ1 bp 9.2% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 9.2% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,541,545 C→G 7.1% H197D (CAC→GAC)  fimB → tyrosine recombinase/inversion of on/off regulator of fimA
RA 4,549,932 T→A 6.5% intergenic (+222/+21) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter
RA 4,566,645 T→A 5.5% K201I (AAA→ATA) ‡ yjiN ← zinc‑type alcohol dehydrogenase‑like protein
RA 4,566,646 T→A 5.6% K201* (AAA→TAA) ‡ yjiN ← zinc‑type alcohol dehydrogenase‑like protein
RA 4,573,188 G→A 5.1% pseudogene (775/1503 nt) yjiT → pseudogene
RA 4,573,189 T→C 5.0% pseudogene (776/1503 nt) yjiT → pseudogene
RA 4,604,753 T→A 7.8% S198R (AGT→AGA bglJ → bgl operon transcriptional activator
RA 4,604,754 T→A 7.8% S199T (TCT→ACT)  bglJ → bgl operon transcriptional activator
RA 4,610,720 T→A 6.1% L436Q (CTG→CAG)  prfC → peptide chain release factor RF‑3
RA 4,638,690 C→T 12.5% G171G (GGC→GGT creD → inner membrane protein
RA 4,638,691 A→G 12.3% T172A (ACC→GCC)  creD → inner membrane protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423761–3424234 3424546–3424238 5–786 37 [32] [35] 37 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 7385659 (0.690)6 (0.070) 4/254 NT 9.7% coding (666/1611 nt) thiP thiamine/thiamine pyrophosphate ABC transporter permease
?NC_000913 = 73894 55 (0.670)coding (628/1611 nt) thiP thiamine/thiamine pyrophosphate ABC transporter permease
* ? NC_000913 274692 =NA (NA)3 (0.040) 3/256 NT NA noncoding (458/1195 nt) IS5 repeat region
?NC_000913 274732 = NA (NA)noncoding (418/1195 nt) IS5 repeat region
* ? NC_000913 = 60104449 (0.580)3 (0.040) 3/246 NT 6.1% coding (2331/3144 nt) cusA copper/silver efflux system, membrane component
?NC_000913 = 601061 47 (0.590)coding (2348/3144 nt) cusA copper/silver efflux system, membrane component
* ? NC_000913 1022126 =73 (0.860)4 (0.050) 4/256 NT 5.4% coding (1758/2154 nt) yccS putative transporter, FUSC superfamily inner membrane protein
?NC_000913 1022162 = 69 (0.840)coding (1722/2154 nt) yccS putative transporter, FUSC superfamily inner membrane protein
* ? NC_000913 = 106241667 (0.790)5 (0.060) 5/252 NT 6.8% noncoding (10/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913 = 1062437 73 (0.900)noncoding (31/134 nt) REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
* ? NC_000913 1207790 =29 (0.340)43 (0.580) 38/232 NT 53.6% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 49 (0.660)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780532 (0.380)35 (0.470) 33/232 NT 47.6% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 49 (0.660)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 148699665 (0.760)5 (0.060) 5/242 NT 7.3% intergenic (+33/‑239) hrpA/ydcF putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding
?NC_000913 = 1487009 68 (0.870)intergenic (+46/‑226) hrpA/ydcF putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding
* ? NC_000913 1787626 =53 (0.620)4 (0.050) 4/254 NT 7.7% coding (182/834 nt) ppsR PEP synthase kinase and PEP synthase pyrophosphorylase
?NC_000913 1787651 = 45 (0.550)coding (207/834 nt) ppsR PEP synthase kinase and PEP synthase pyrophosphorylase
* ? NC_000913 2077179 =70 (0.820)5 (0.060) 4/248 NT 7.2% coding (68/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
?NC_000913 2077221 = 64 (0.800)coding (110/369 nt) cbeA CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin
* ? NC_000913 = 330748475 (0.880)4 (0.050) 4/254 NT 5.3% coding (377/1890 nt) deaD ATP‑dependent RNA helicase
?NC_000913 = 3307492 72 (0.880)coding (369/1890 nt) deaD ATP‑dependent RNA helicase
* ? NC_000913 3721045 =126 (1.480)234 (2.770) 130/262 NT 68.0% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 95 (1.120)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 3765547 =96 (1.130)11 (0.130) 5/254 NT 6.0% coding (3365/4134 nt) rhsA Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
?NC_000913 3767284 = 252 (3.080)pseudogene (64/945 nt) rhsJ Rhs‑family protein
* ? NC_000913 = 394355415 (0.180)6 (0.080) 4/242 NT 30.4% intergenic (+44/‑150) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
?NC_000913 = 3943572 NA (NA)intergenic (+62/‑132) gltU/rrlC tRNA‑Glu/23S ribosomal RNA of rrnC operon
* ? NC_000913 3998038 =79 (0.930)5 (0.060) 5/250 NT 6.6% coding (56/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
?NC_000913 3998077 = 66 (0.820)coding (95/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
* ? NC_000913 = 405830284 (0.990)6 (0.080) 6/246 NT 6.4% intergenic (‑268/‑105) glnA/typA glutamine synthetase/GTP‑binding protein
?NC_000913 = 4058333 96 (1.210)intergenic (‑299/‑74) glnA/typA glutamine synthetase/GTP‑binding protein
* ? NC_000913 = 416833048 (0.560)3 (0.040) 3/264 NT 5.5% intergenic (+130/‑42) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168374 55 (0.650)noncoding (3/76 nt) gltT tRNA‑Glu
* ? NC_000913 = 439858252 (0.610)5 (0.060) 4/252 NT 9.0% coding (1171/1848 nt) mutL methyl‑directed mismatch repair protein
?NC_000913 = 4398592 51 (0.630)coding (1181/1848 nt) mutL methyl‑directed mismatch repair protein
* ? NC_000913 = 454269050 (0.590)5 (0.060) 5/246 NT 7.2% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 83 (1.050)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)