breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 9,907 A→C 8.8% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 8.7% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 53,376 G→A 6.0% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,379 T→C 5.6% E13G (GAG→GGG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 72,198 A→G 5.3% intergenic (+83/+31) yabI → / ← thiQ DedA family inner membrane protein/thiamine/thiamine pyrophosphate ABC transporter ATPase
RA 72,199 A→C 5.1% intergenic (+84/+30) yabI → / ← thiQ DedA family inner membrane protein/thiamine/thiamine pyrophosphate ABC transporter ATPase
RA 72,205 T→G 5.8% intergenic (+90/+24) yabI → / ← thiQ DedA family inner membrane protein/thiamine/thiamine pyrophosphate ABC transporter ATPase
RA 72,206 C→A 5.7% intergenic (+91/+23) yabI → / ← thiQ DedA family inner membrane protein/thiamine/thiamine pyrophosphate ABC transporter ATPase
RA 83,587 A→C 9.8% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 9.7% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 111,013 G→A 7.1% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 111,016 T→C 7.9% intergenic (+32/‑28) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 120,154 Δ1 bp 7.0% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 7.1% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 151,519 A→C 6.9% I27M (ATT→ATG yadK ← putative fimbrial‑like adhesin protein
RA 151,522 G→T 6.7% A26A (GCC→GCA yadK ← putative fimbrial‑like adhesin protein
RA 164,557 G→C 6.5% intergenic (+23/‑173) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,558 T→A 6.5% intergenic (+24/‑172) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,620 C→T 7.7% intergenic (+86/‑110) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,621 A→G 8.9% intergenic (+87/‑109) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 167,917 A→C 6.7% Q145P (CAG→CCG) ‡ fhuA → ferrichrome outer membrane transporter
RA 167,918 G→C 6.8% Q145H (CAG→CAC) ‡ fhuA → ferrichrome outer membrane transporter
RA 167,919 G→T 6.8% G146C (GGC→TGC)  fhuA → ferrichrome outer membrane transporter
RA 201,032 G→A 5.5% G21D (GGC→GAC)  lpxD → UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase
RA 208,552 T→A 5.3% L1143I (TTA→ATA)  dnaE → DNA polymerase III alpha subunit
RA 254,228 A→T 5.2% intergenic (+26/+31) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
RA 254,233 A→T 5.2% intergenic (+31/+26) prfH → / ← pepD pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D)
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 292,302 C→G 5.2% intergenic (+71/+20) yagJ → / ← yagK CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
RA 314,255 T→C 6.1% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 314,258 G→A 6.1% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 373,332 C→G 5.1% P138A (CCA→GCA)  mhpF → acetaldehyde‑CoA dehydrogenase II, NAD‑binding
RA 385,724 T→A 5.9% W165R (TGG→AGG)  tauA → taurine ABC transporter periplasmic binding protein
RA 443,022 G→A 8.0% intergenic (+25/+29) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 443,023 T→C 8.3% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 454,853 T→C 9.1% intergenic (+64/‑280) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 454,856 G→A 9.7% intergenic (+67/‑277) bolA → / → tig stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor)
RA 475,971 C→G 11.7% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 12.1% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 481,225 T→G 9.6% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 481,228 C→A 9.8% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 533,846 T→C 7.4% intergenic (+20/‑70) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 533,849 G→A 7.0% intergenic (+23/‑67) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 543,091 G→C 5.2% intergenic (+58/+170) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,094 G→C 5.1% intergenic (+61/+167) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,207 A→T 5.3% intergenic (+174/+54) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,210 A→T 5.3% intergenic (+177/+51) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 594,950 T→G 5.0% H165P (CAT→CCT)  cusR ← response regulator in two‑component regulatory system with CusS
RA 595,519 T→A 5.8% intergenic (‑76/‑81) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 595,520 T→A 5.7% intergenic (‑77/‑80) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 603,391 C→G 5.4% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 5.5% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 6.0% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 644,030 A→G 6.2% intergenic (‑63/+167) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,034 T→C 5.6% intergenic (‑67/+163) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,036 A→T 5.9% intergenic (‑69/+161) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,038 G→A 5.9% intergenic (‑71/+159) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,042 C→T 6.0% intergenic (‑75/+155) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 647,575 A→C 5.2% V154G (GTC→GGC)  citX ← apo‑citrate lyase phosphoribosyl‑dephospho‑CoA transferase
RA 657,531 T→G 9.5% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 9.4% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,535 C→A 9.3% intergenic (+34/+20) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 672,110 G→A 6.3% T26I (ACC→ATC)  lptE ← LPS assembly OM complex LptDE, lipoprotein component
RA 672,113 T→C 5.3% D25G (GAT→GGT)  lptE ← LPS assembly OM complex LptDE, lipoprotein component
RA 699,556 C→T 8.8% intergenic (‑379/+18) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 699,559 A→G 8.8% intergenic (‑382/+15) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 710,170 C→T 10.1% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 8.8% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 725,276 G→A 5.2% Y587Y (TAC→TAT kdpB ← potassium translocating ATPase, subunit B
RA 729,376 G→T 7.6% intergenic (+36/‑207) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 729,377 A→T 9.1% intergenic (+37/‑206) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 729,379 A→C 8.7% intergenic (+39/‑204) ybfA → / → rhsC DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 770,679 G→T 7.5% intergenic (+68/‑779) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 770,682 A→C 7.0% intergenic (+71/‑776) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 773,138 G→A 5.3% G33S (GGC→AGC)  cydB → cytochrome d terminal oxidase, subunit II
RA 773,553 T→C 6.0% L171P (CTG→CCG) ‡ cydB → cytochrome d terminal oxidase, subunit II
RA 773,554 G→A 6.0% L171L (CTG→CTA) ‡ cydB → cytochrome d terminal oxidase, subunit II
RA 774,356 C→G 7.4% P16P (CCC→CCG ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 774,358 T→A 7.0% L17Q (CTG→CAG)  ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 782,999 T→G 5.5% L305L (CTT→CTG nadA → quinolinate synthase, subunit A
RA 783,000 C→A 5.3% Q306K (CAG→AAG)  nadA → quinolinate synthase, subunit A
RA 805,312 G→T 5.0% E604* (GAG→TAG) ‡ ybhJ → aconitase family protein
RA 805,313 A→C 5.2% E604A (GAG→GCG) ‡ ybhJ → aconitase family protein
RA 832,252 T→A 6.7% intergenic (+16/+216) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,253 A→T 6.9% intergenic (+17/+215) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 832,254 T→A 7.1% intergenic (+18/+214) rhlE → / ← ybiA ATP‑dependent RNA helicase/DUF1768 family protein
RA 847,213 A→T 11.5% intergenic (‑94/+45) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,214 T→A 11.5% intergenic (‑95/+44) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,215 A→T 11.5% intergenic (‑96/+43) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 850,993 T→C 5.6% intergenic (+28/+21) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,995 T→G 5.6% intergenic (+30/+19) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,996 C→A 5.5% intergenic (+31/+18) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,998 G→A 5.6% intergenic (+33/+16) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 857,576 T→C 6.3% intergenic (+21/+220) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,578 C→G 6.8% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 6.5% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 892,455 G→C 7.1% V163V (GTG→GTC rimK → ribosomal protein S6 modification protein
RA 892,457 T→A 6.5% I164N (ATT→AAT)  rimK → ribosomal protein S6 modification protein
RA 892,459 G→C 6.5% D165H (GAC→CAC)  rimK → ribosomal protein S6 modification protein
RA 897,968:1 +A 5.7% intergenic (+39/‑21) potI → / → ybjO putrescine ABC transporter permease/DUF2593 family inner membrane protein
RA 897,973 Δ1 bp 5.4% intergenic (+44/‑16) potI → / → ybjO putrescine ABC transporter permease/DUF2593 family inner membrane protein
RA 915,080 G→C 10.8% intergenic (‑223/+272) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 915,081 G→C 10.8% intergenic (‑224/+271) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 940,751 T→C 9.4% intergenic (+31/‑208) serS → / → dmsA seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A
RA 940,754 G→A 9.3% intergenic (+34/‑205) serS → / → dmsA seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A
RA 958,769 C→G 7.6% intergenic (+28/‑43) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,771 A→T 7.6% intergenic (+30/‑41) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,773 C→G 8.2% intergenic (+32/‑39) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 987,560 G→C 6.6% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 7.5% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 993,259 C→T 5.0% intergenic (+25/+18) pepN → / ← ssuB aminopeptidase N/aliphatic sulfonate ABC transporter ATPase
RA 1,007,813 T→C 5.0% intergenic (‑213/‑31) ycbX ← / → rlmL 6‑N‑hydroxylaminopurine detoxification oxidoreductase/23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent
RA 1,007,816 G→A 5.1% intergenic (‑216/‑28) ycbX ← / → rlmL 6‑N‑hydroxylaminopurine detoxification oxidoreductase/23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM‑dependent
RA 1,015,912 T→A 14.9% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,018,983 A→T 9.0% intergenic (+46/+30) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,018,986 A→T 9.0% intergenic (+49/+27) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,038,117 C→G 5.3% H126Q (CAC→CAG cbdA → cytochrome bd‑II oxidase, subunit I
RA 1,038,118 C→G 5.5% L127V (CTG→GTG)  cbdA → cytochrome bd‑II oxidase, subunit I
RA 1,041,937 T→G 6.8% intergenic (+22/+93) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,041,940 C→A 7.0% intergenic (+25/+90) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,052,257 C→T 6.2% intergenic (+17/+32) gnsA → / ← yccM putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein
RA 1,113,544 G→A 6.8% intergenic (+138/‑35) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,546 T→A 6.4% intergenic (+140/‑33) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,548 T→C 6.3% intergenic (+142/‑31) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,141,148 C→T 5.5% intergenic (+162/+34) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,150 G→A 5.7% intergenic (+164/+32) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,151 T→C 5.8% intergenic (+165/+31) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,153 A→G 5.7% intergenic (+167/+29) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,147,548 T→G 5.0% intergenic (+8/‑73) rpmF → / → plsX 50S ribosomal subunit protein L32/putative phosphate acyltransferase
RA 1,159,335 G→T 6.6% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 6.6% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,169,380 T→C 6.7% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 6.8% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 6.9% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,174,077 G→A 7.3% intergenic (‑113/+15) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,174,080 T→C 7.3% intergenic (‑116/+12) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,202,957 G→T 5.2% intergenic (‑24/‑67) cohE ← / → croE e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA 1,202,961 A→C 5.3% intergenic (‑28/‑63) cohE ← / → croE e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator
RA 1,211,610 A→G 6.4% intergenic (+33/+70) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,612 A→T 6.4% intergenic (+35/+68) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,614 C→T 6.4% intergenic (+37/+66) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,224,239 A→T 9.0% intergenic (+332/+40) ycgI → / ← minE pseudogene/cell division topological specificity factor
RA 1,224,242 A→T 9.0% intergenic (+335/+37) ycgI → / ← minE pseudogene/cell division topological specificity factor
RA 1,233,154 T→A 8.9% intergenic (‑124/+22) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,233,157 T→A 9.2% intergenic (‑127/+19) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,292,472 G→A 6.5% intergenic (+107/+37) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA 1,292,473 C→G 6.4% intergenic (+108/+36) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA 1,292,474 T→C 6.6% intergenic (+109/+35) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA 1,306,787 G→A 5.2% intergenic (+19/+34) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,311,830 A→G 8.4% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 8.5% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,315,796 A→G 6.6% intergenic (‑26/+60) yciF ← / ← yciG putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein
RA 1,315,800 A→G 8.2% intergenic (‑30/+56) yciF ← / ← yciG putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein
RA 1,315,803 C→T 8.3% intergenic (‑33/+53) yciF ← / ← yciG putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein
RA 1,315,807 C→T 8.2% intergenic (‑37/+49) yciF ← / ← yciG putative rubrerythrin/ferritin‑like metal‑binding protein/KGG family protein
RA 1,324,837 A→C 6.0% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 6.0% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 5.7% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,344,033 A→G 6.3% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 6.3% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 6.1% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,354,220 C→A 6.0% G100V (GGT→GTT)  sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,223 A→G 6.1% V99A (GTG→GCG) ‡ sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,224 C→T 6.1% V99M (GTG→ATG) ‡ sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,354,227 T→G 5.7% T98P (ACC→CCC)  sapC ← antimicrobial peptide transport ABC transporter permease
RA 1,388,283 C→T 6.0% intergenic (+22/+22) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,284 A→T 6.1% intergenic (+23/+21) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,388,285 A→G 6.2% intergenic (+24/+20) tyrR → / ← tpx aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase
RA 1,426,417 T→C 5.1% intergenic (+335/‑37) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,426,418 T→G 5.1% intergenic (+336/‑36) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,426,422 G→A 5.0% intergenic (+340/‑32) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,449,050 T→A 12.0% intergenic (+32/+26) feaB → / ← tynA phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA 1,498,892 A→T 7.7% intergenic (+17/‑46) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,894 C→G 7.7% intergenic (+19/‑44) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,498,896 A→T 7.7% intergenic (+21/‑42) ydcH → / → rimL DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase
RA 1,543,229 G→T 6.4% L278M (CTG→ATG)  narU ← nitrate/nitrite transporter
RA 1,543,230 C→G 6.4% M277I (ATG→ATC) ‡ narU ← nitrate/nitrite transporter
RA 1,543,231 A→C 6.5% M277R (ATG→AGG) ‡ narU ← nitrate/nitrite transporter
RA 1,552,388 T→C 5.7% intergenic (+397/+10) fdnI → / ← yddM formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator
RA 1,572,928 C→G 5.9% A759P (GCA→CCA)  pqqL ← putative periplasmic M16 family zinc metalloendopeptidase
RA 1,603,724 A→C 9.0% T236P (ACC→CCC)  lsrC → autoinducer 2 import system permease protein
RA 1,603,735 G→T 8.8% G239G (GGG→GGT lsrC → autoinducer 2 import system permease protein
RA 1,666,466 T→G 7.2% Y384* (TAT→TAG clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,468 A→T 6.9% Q385L (CAG→CTG)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,666,470 C→A 7.7% L386I (CTA→ATA)  clcB → H(+)/Cl(‑) exchange transporter
RA 1,685,527 A→G 100% G354G (GGT→GGC fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,689,817 C→A 7.7% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,819 A→T 7.7% intergenic (+68/‑33) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,821 T→G 7.7% intergenic (+70/‑31) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,693,417 G→C 5.2% L283V (CTG→GTG)  uidB ← glucuronide transporter
RA 1,698,585 T→G 6.9% E199A (GAA→GCA)  malI ← transcriptional repressor of Mal regulon
RA 1,698,587 T→A 7.0% A198A (GCA→GCT) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,698,589 C→A 6.9% A198S (GCA→TCA) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,701,108 A→T 8.9% N51I (AAT→ATT)  malY → PLP‑dependent beta‑cystathionase and maltose regulon regulator
RA 1,736,097 T→A 5.8% intergenic (+138/+24) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,736,100 T→A 5.9% intergenic (+141/+21) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,764,701 G→A 5.2% intergenic (‑315/+12) sufA ← / ← rydB Fe‑S cluster assembly protein/novel sRNA, function unknown
RA 1,770,203 T→A 12.2% intergenic (+17/‑169) ydiK → / → rprA UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA 1,770,204 C→G 12.2% intergenic (+18/‑168) ydiK → / → rprA UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA 1,770,205 T→A 13.0% intergenic (+19/‑167) ydiK → / → rprA UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent
RA 1,795,227 A→T 6.1% intergenic (‑75/+26) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,228 G→C 6.1% intergenic (‑76/+25) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,229 A→T 6.1% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,797,388 G→T 5.4% P186Q (CCG→CAG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,797,391 A→C 5.4% L185R (CTG→CGG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,799,370 Δ1 bp 9.0% intergenic (‑100/+23) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,799,374:1 +T 8.8% intergenic (‑104/+19) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,806,390 G→A 5.2% L7L (TTG→TTA pfkB → 6‑phosphofructokinase II
RA 1,823,335 G→C 12.5% intergenic (+50/‑180) nadE → / → cho NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA 1,823,338 G→C 13.1% intergenic (+53/‑177) nadE → / → cho NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA 1,829,328 C→G 5.8% G136A (GGC→GCC)  astD ← succinylglutamic semialdehyde dehydrogenase
RA 1,829,334 G→T 6.0% P134Q (CCG→CAG)  astD ← succinylglutamic semialdehyde dehydrogenase
RA 1,864,758 G→A 5.2% intergenic (+24/+24) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,763 A→T 5.8% intergenic (+29/+19) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,768 T→C 5.6% intergenic (+34/+14) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,865,682 G→C 8.6% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,868,859 Δ1 bp 5.8% intergenic (+17/‑96) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,868,865:1 +G 5.9% intergenic (+23/‑90) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,880,851 T→A 7.4% intergenic (‑92/+35) leuE ← / ← dmlR leucine efflux protein/transcriptional activator of dmlA
RA 1,880,852 T→A 7.4% intergenic (‑93/+34) leuE ← / ← dmlR leucine efflux protein/transcriptional activator of dmlA
RA 1,881,358 T→A 6.2% D151V (GAC→GTC)  dmlR ← transcriptional activator of dmlA
RA 1,883,027 C→G 10.4% intergenic (+30/‑161) dmlA → / → yeaV D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter
RA 1,888,030 A→T 6.2% intergenic (‑39/+31) rnd ← / ← fadD ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)
RA 1,888,032 T→A 6.1% intergenic (‑41/+29) rnd ← / ← fadD ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)
RA 1,888,034 A→T 6.2% intergenic (‑43/+27) rnd ← / ← fadD ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase)
RA 1,910,295 A→T 5.8% D7V (GAC→GTC)  yebQ → putative transporter
RA 1,932,094 C→G 7.2% intergenic (+35/+21) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,095 T→A 7.1% intergenic (+36/+20) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,096 C→G 7.0% intergenic (+37/+19) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,944,233 G→T 6.0% intergenic (+34/+113) znuB → / ← ruvB zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
RA 1,944,234 A→C 5.8% intergenic (+35/+112) znuB → / ← ruvB zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
RA 1,944,240 T→G 5.8% intergenic (+41/+106) znuB → / ← ruvB zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
RA 1,944,241 T→C 5.3% intergenic (+42/+105) znuB → / ← ruvB zinc ABC transporter permease/ATP‑dependent DNA helicase, component of RuvABC resolvasome
RA 1,952,587 T→A 5.8% W108R (TGG→AGG)  yecN → MAPEG family inner membrane protein
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,985,112 C→G 14.5% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,987,442 Δ1 bp 6.9% intergenic (+14/+65) ftnB → / ← yecJ ferritin B, putative ferrous iron reservoir/DUF2766 family protein
RA 1,987,450:1 +A 6.5% intergenic (+22/+57) ftnB → / ← yecJ ferritin B, putative ferrous iron reservoir/DUF2766 family protein
RA 2,032,336 G→C 8.8% intergenic (‑19/+48) dcm ← / ← yedJ DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase
RA 2,079,004 G→C 8.4% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,081,688 A→T 6.5% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,090,122 A→G 9.4% intergenic (+76/‑70) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,124 C→G 9.2% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,126 C→T 9.1% intergenic (+80/‑66) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,115,847 G→T 5.3% A17E (GCG→GAG)  wcaM ← colanic acid biosynthesis protein
RA 2,115,849 C→G 5.1% S16S (TCG→TCC) ‡ wcaM ← colanic acid biosynthesis protein
RA 2,115,851 A→C 5.3% S16A (TCG→GCG) ‡ wcaM ← colanic acid biosynthesis protein
RA 2,139,720 C→A 5.3% intergenic (+235/+39) yegH → / ← asmA inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,165,626 T→C 6.4% intergenic (+105/‑42) yegP → / → yegQ UPF0339 family protein/putative peptidase
RA 2,165,628 A→T 5.9% intergenic (+107/‑40) yegP → / → yegQ UPF0339 family protein/putative peptidase
RA 2,165,630 G→A 5.4% intergenic (+109/‑38) yegP → / → yegQ UPF0339 family protein/putative peptidase
RA 2,168,423 A→T 5.1% intergenic (‑117/‑289) yegR ← / → yegS uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,332 C→T 6.2% intergenic (‑128/+180) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,337 G→T 6.0% intergenic (‑133/+175) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,340 A→C 6.0% intergenic (‑136/+172) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,345 A→G 5.7% intergenic (‑141/+167) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,229,322 C→G 6.4% intergenic (+257/+116) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,229,323 C→G 6.4% intergenic (+258/+115) yohP → / ← dusC uncharacterized protein/tRNA‑dihydrouridine synthase C
RA 2,282,830 T→C 5.5% intergenic (+29/+110) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,831 C→G 5.5% intergenic (+30/+109) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,832 C→G 6.4% intergenic (+31/+108) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,282,833 G→A 5.6% intergenic (+32/+107) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,286,311 C→G 7.5% intergenic (+24/+79) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,313 T→A 7.5% intergenic (+26/+77) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,315 C→G 7.3% intergenic (+28/+75) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,311,616 C→T 6.2% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 5.9% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,314,800 A→C 10.4% Q438P (CAG→CCG) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,314,801 G→T 10.6% Q438H (CAG→CAT) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,318,095 C→G 100% L594F (TTG→TTC rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,336,763 A→C 5.3% intergenic (‑119/+30) yfaA ← / ← gyrA DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A
RA 2,336,766 G→T 5.3% intergenic (‑122/+27) yfaA ← / ← gyrA DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A
RA 2,375,483 A→T 5.4% L160L (CTT→CTA) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,375,484 A→T 5.4% L160H (CTT→CAT) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,383,956 A→T 17.6% intergenic (+32/+39) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,383,959 A→T 17.8% intergenic (+35/+36) elaD → / ← yfbK protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein
RA 2,390,012 Δ1 bp 8.8% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,016:1 +C 9.2% intergenic (+52/+32) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,390,024 C→T 8.7% intergenic (+60/+24) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,414 C→G 5.4% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 5.5% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,414,689 C→G 8.7% intergenic (+17/‑58) ackA → / → pta acetate kinase A and propionate kinase 2/phosphate acetyltransferase
RA 2,415,725 C→A 5.9% L327M (CTG→ATG) ‡ pta → phosphate acetyltransferase
RA 2,415,726 T→G 6.3% L327R (CTG→CGG) ‡ pta → phosphate acetyltransferase
RA 2,425,968 T→G 6.1% intergenic (‑52/+38) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,971 C→A 6.1% intergenic (‑55/+35) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,975 A→G 5.8% intergenic (‑59/+31) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,427,625 C→A 5.2% G56V (GGT→GTT)  argT ← lysine/arginine/ornithine transporter subunit
RA 2,428,697 A→G 5.6% intergenic (‑71/+24) ubiX ← / ← purF 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase
RA 2,428,699 A→T 5.5% intergenic (‑73/+22) ubiX ← / ← purF 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase
RA 2,428,701 C→T 5.5% intergenic (‑75/+20) ubiX ← / ← purF 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase
RA 2,432,985 A→G 7.2% intergenic (‑43/+27) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,432,990 G→C 7.3% intergenic (‑48/+22) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,432,995 C→T 6.3% intergenic (‑53/+17) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,462,677 A→T 5.6% intergenic (+31/‑335) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,678 T→A 5.7% intergenic (+32/‑334) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,679 A→T 5.7% intergenic (+33/‑333) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,474,878 T→C 8.7% intergenic (+22/‑106) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,474,881 G→A 9.3% intergenic (+25/‑103) yfdQ → / → yfdR CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein
RA 2,504,192 T→A 5.2% A98A (GCA→GCT fryA ← putative PTS enzyme: Hpr, enzyme I and IIA components
RA 2,504,197 G→A 5.2% Q97* (CAG→TAG)  fryA ← putative PTS enzyme: Hpr, enzyme I and IIA components
RA 2,521,344 C→T 7.3% intergenic (+16/+249) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,346 A→T 7.5% intergenic (+18/+247) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,521,348 A→G 7.3% intergenic (+20/+245) lysV → / ← xapR tRNA‑Lys/transcriptional activator of xapAB
RA 2,525,907 G→A 6.0% intergenic (+16/+23) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,525,908 C→G 5.9% intergenic (+17/+22) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,561,205 A→T 7.1% intergenic (+307/‑163) yffL → / → yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,561,206 A→T 7.1% intergenic (+308/‑162) yffL → / → yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,581,762 G→A 6.1% A339V (GCC→GTC)  ypfG ← DUF1176 family protein
RA 2,581,765 T→C 6.0% D338G (GAC→GGC)  ypfG ← DUF1176 family protein
RA 2,589,122 G→A 9.4% G510S (GGC→AGC)  acrD → aminoglycoside/multidrug efflux system
RA 2,589,125 T→C 10.2% F511L (TTT→CTT)  acrD → aminoglycoside/multidrug efflux system
RA 2,622,348:1 +A 5.9% coding (115/639 nt) purN → phosphoribosylglycinamide formyltransferase 1
RA 2,622,354 Δ1 bp 5.9% coding (121/639 nt) purN → phosphoribosylglycinamide formyltransferase 1
RA 2,638,584 A→T 5.9% F23L (TTT→TTA bamB ← BamABCDE complex OM biogenesis lipoprotein
RA 2,653,367 G→A 9.4% intergenic (+28/‑488) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,653,372 T→C 9.5% intergenic (+33/‑483) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,655,044 A→G 5.8% intergenic (‑111/+31) sseB ← / ← pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
RA 2,655,045 A→C 5.8% intergenic (‑112/+30) sseB ← / ← pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
RA 2,655,051 T→A 5.7% intergenic (‑118/+24) sseB ← / ← pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
RA 2,655,052 T→A 5.7% intergenic (‑119/+23) sseB ← / ← pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
RA 2,655,059 C→T 5.1% intergenic (‑126/+16) sseB ← / ← pepB rhodanase‑like enzyme, sulfur transfer from thiosulfate/aminopeptidase B
RA 2,679,430 Δ1 bp 6.5% intergenic (‑63/+34) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
RA 2,679,434:1 +C 6.5% intergenic (‑67/+30) yphF ← / ← yphG putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein
RA 2,691,169 A→T 7.0% noncoding (172/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,171 T→A 6.7% noncoding (170/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,691,173 A→T 6.9% noncoding (168/184 nt) glmY ← sRNA activator of glmS mRNA, glmZ processing antagonist
RA 2,704,304 A→G 6.9% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 7.0% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 6.9% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,707,320 A→T 7.4% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 7.4% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,716,030 T→G 9.1% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 9.1% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,729,465 G→A 5.6% intergenic (‑21/+151) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,729,466 T→A 6.5% intergenic (‑22/+150) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,729,467 T→C 6.7% intergenic (‑23/+149) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,737,711 G→A 5.1% intergenic (+65/‑34) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,753,986 A→T 5.7% intergenic (+40/+22) bamE → / ← ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
RA 2,761,620 T→G 9.8% K641Q (AAG→CAG)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,761,623 C→A 8.6% V640L (GTA→TTA)  yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,768,609 T→C 6.2% intergenic (+36/‑56) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,614 A→C 5.3% intergenic (+41/‑51) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,615 G→T 5.3% intergenic (+42/‑50) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,768,620 G→A 5.3% intergenic (+47/‑45) yfjP → / → yfjQ CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein
RA 2,778,123 G→T 7.6% intergenic (+341/+23) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,778,124 A→C 7.4% intergenic (+342/+22) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,801,056 A→T 7.0% N31I (AAT→ATT)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,807,093 A→T 5.4% intergenic (+19/‑39) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,807,095 G→A 5.5% intergenic (+21/‑37) proW → / → proX glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein
RA 2,814,174 T→A 5.5% intergenic (+20/+44) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,814,175 T→A 5.5% intergenic (+21/+43) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,822,673 C→T 7.0% intergenic (‑34/+35) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,678 G→T 6.8% intergenic (‑39/+30) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,679 A→C 6.8% intergenic (‑40/+29) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,684 A→G 6.8% intergenic (‑45/+24) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,856,257 G→C 8.6% L640L (CTG→CTC fhlA → formate hydrogenlyase transcriptional activator
RA 2,856,258 G→C 8.7% E641Q (GAG→CAG)  fhlA → formate hydrogenlyase transcriptional activator
RA 2,866,487 G→C 7.7% intergenic (+22/+72) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,866,488 G→C 7.7% intergenic (+23/+71) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,873,915 A→G 7.5% H26H (CAT→CAC) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,917 G→C 7.7% H26D (CAT→GAT) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,919 C→T 7.7% G25D (GGT→GAT)  cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,890,625 A→T 5.4% L425H (CTC→CAC)  cysJ ← sulfite reductase, alpha subunit, flavoprotein
RA 2,900,327 A→C 5.1% intergenic (‑54/‑265) ygcW ← / → yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA 2,906,607 C→T 6.1% intergenic (+24/+36) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,608 G→C 6.1% intergenic (+25/+35) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,906,609 G→C 6.1% intergenic (+26/+34) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,936,359 T→A 5.6% V259D (GTT→GAT) ‡ fucI → L‑fucose isomerase
RA 2,936,360 T→A 5.6% V259V (GTT→GTA) ‡ fucI → L‑fucose isomerase
RA 2,939,331 A→G 5.2% intergenic (+21/‑37) fucU → / → fucR L‑fucose mutarotase/l‑fucose operon activator
RA 2,939,333 G→C 5.2% intergenic (+23/‑35) fucU → / → fucR L‑fucose mutarotase/l‑fucose operon activator
RA 2,939,335 C→T 5.3% intergenic (+25/‑33) fucU → / → fucR L‑fucose mutarotase/l‑fucose operon activator
RA 2,951,471 G→A 6.5% R331C (CGC→TGC)  recD ← exonuclease V (RecBCD complex), alpha chain
RA 2,951,475 T→A 6.4% L329L (CTA→CTT recD ← exonuclease V (RecBCD complex), alpha chain
RA 2,951,479 T→C 5.6% Q328R (CAG→CGG)  recD ← exonuclease V (RecBCD complex), alpha chain
RA 2,972,652 A→T 9.9% intergenic (+15/+17) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 2,972,653 A→T 9.8% intergenic (+16/+16) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 3,007,466 T→C 9.9% intergenic (+14/‑44) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,007,473 G→A 7.3% intergenic (+21/‑37) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,020,509:1 +T 5.4% intergenic (+20/‑31) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,510 G→T 6.4% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 6.4% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 6.8% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,033,624 A→G 6.2% intergenic (+11/+33) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,627 T→A 5.8% intergenic (+14/+30) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,628 T→A 5.8% intergenic (+15/+29) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,631 C→T 5.8% intergenic (+18/+26) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,051,723 C→G 6.4% D199H (GAT→CAT)  ubiI ← 2‑octaprenylphenol hydroxylase, FAD‑dependent
RA 3,057,145 G→C 5.0% intergenic (+157/+33) sibC → / ← serA sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,057,150 C→T 6.3% intergenic (+162/+28) sibC → / ← serA sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,066,293 T→C 6.0% D294G (GAC→GGC)  ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,299:1 +G 6.4% coding (875/897 nt) ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,319 Δ1 bp 8.6% coding (855/897 nt) ygfI ← putative DNA‑binding transcriptional regulator
RA 3,066,326 G→A 5.8% A283V (GCC→GTC)  ygfI ← putative DNA‑binding transcriptional regulator
RA 3,091,033 T→C 5.3% A229A (GCT→GCC endA → DNA‑specific endonuclease I
RA 3,091,036 C→G 5.1% C230W (TGC→TGG endA → DNA‑specific endonuclease I
RA 3,098,515 G→C 6.8% intergenic (+112/+43) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,518 C→T 6.4% intergenic (+115/+40) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,519 A→G 6.4% intergenic (+116/+39) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,522 G→C 6.6% intergenic (+119/+36) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,101,655 T→A 6.5% intergenic (‑32/+152) yggN ← / ← yggL DUF2884 family putative periplasmic protein/DUF469 family protein
RA 3,101,656 T→A 6.5% intergenic (‑33/+151) yggN ← / ← yggL DUF2884 family putative periplasmic protein/DUF469 family protein
RA 3,156,590 C→A 6.8% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 6.7% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,171,852 C→T 6.7% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 7.0% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 7.0% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 7.7% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,200,991 A→T 5.7% intergenic (‑26/‑216) ygiF ← / → ygiM inorganic triphosphatase/SH3 domain protein
RA 3,202,685 A→G 5.2% E265E (GAA→GAG cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,202,686 C→T 5.1% L266F (CTC→TTC)  cca → fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase
RA 3,234,506 G→A 8.2% intergenic (‑51/+233) higB ← / ← rlmG mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent
RA 3,234,507 A→T 8.2% intergenic (‑52/+232) higB ← / ← rlmG mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent
RA 3,234,508 T→C 8.3% intergenic (‑53/+231) higB ← / ← rlmG mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent
RA 3,239,609 T→G 6.6% intergenic (+64/‑335) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,610 C→G 6.1% intergenic (+65/‑334) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,611 C→A 6.5% intergenic (+66/‑333) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,253,285 T→A 9.3% intergenic (+18/+33) yhaI → / ← yhaJ DUF805 family inner membrane protein/LysR family putative transcriptional regulator
RA 3,253,288 T→A 9.4% intergenic (+21/+30) yhaI → / ← yhaJ DUF805 family inner membrane protein/LysR family putative transcriptional regulator
RA 3,288,032 C→A 11.9% intergenic (+22/‑58) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,288,033 T→G 12.7% intergenic (+23/‑57) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,291,109 A→T 5.6% K766* (AAA→TAA) ‡ yraJ → putative outer membrane protein
RA 3,291,110 A→T 5.6% K766I (AAA→ATA) ‡ yraJ → putative outer membrane protein
RA 3,309,004 C→T 7.3% intergenic (‑80/+29) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,009 C→T 6.9% intergenic (‑85/+24) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,012 A→G 7.7% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,313,207 G→A 5.1% intergenic (‑29/+135) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,208 T→A 5.1% intergenic (‑30/+134) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,209 T→C 5.1% intergenic (‑31/+133) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,332,822 G→A 7.2% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 7.3% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,334,703 A→G 9.9% intergenic (+22/‑206) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,704 G→C 9.9% intergenic (+23/‑205) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,705 C→T 9.9% intergenic (+24/‑204) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,405,586 C→T 5.3% P51S (CCA→TCA)  accB → acetyl CoA carboxylase, BCCP subunit
RA 3,405,589 A→T 5.3% M52L (ATG→TTG)  accB → acetyl CoA carboxylase, BCCP subunit
RA 3,405,592 A→G 5.1% M53V (ATG→GTG)  accB → acetyl CoA carboxylase, BCCP subunit
RA 3,439,588 G→C 11.0% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 10.9% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,471,357 C→T 5.5% intergenic (‑28/+43) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,471,361 T→G 5.3% intergenic (‑32/+39) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,471,362 C→A 5.7% intergenic (‑33/+38) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,471,366 A→G 5.5% intergenic (‑37/+34) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,477,878 T→A 8.7% intergenic (+20/+29) slyX → / ← slyD phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)
RA 3,504,875 T→G 6.3% intergenic (+92/+60) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,512,306 G→C 7.5% I13M (ATC→ATG yhfZ ← putative DNA‑binding transcriptional regulator
RA 3,512,309 G→C 7.8% V12V (GTC→GTG yhfZ ← putative DNA‑binding transcriptional regulator
RA 3,522,778 C→G 5.4% intergenic (‑27/‑93) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,522,779 T→A 5.5% intergenic (‑28/‑92) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,566,210 A→T 5.5% G124G (GGT→GGA) ‡ glgP ← glycogen phosphorylase
RA 3,566,212 C→G 5.6% G124R (GGT→CGT) ‡ glgP ← glycogen phosphorylase
RA 3,566,215 T→A 5.6% N123Y (AAC→TAC)  glgP ← glycogen phosphorylase
RA 3,566,218 C→G 5.5% G122R (GGT→CGT)  glgP ← glycogen phosphorylase
RA 3,566,220 A→T 5.4% L121H (CTC→CAC)  glgP ← glycogen phosphorylase
RA 3,639,165 T→C 5.3% intergenic (+24/+220) pitA → / ← uspB phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA 3,639,172 G→A 6.0% intergenic (+31/+213) pitA → / ← uspB phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B
RA 3,642,358 T→A 7.8% intergenic (+27/+22) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,642,361 T→A 7.7% intergenic (+30/+19) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,657,599 T→A 5.2% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 5.2% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,603 T→A 5.4% intergenic (+36/+383) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,708,595 G→A 10.0% intergenic (‑890/+21) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,596 T→A 9.7% intergenic (‑891/+20) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,597 T→C 9.7% intergenic (‑892/+19) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,740,791 G→C 5.4% G363R (GGC→CGC)  avtA → valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
RA 3,774,207 C→T 8.5% intergenic (+13/‑217) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,214 C→T 8.0% intergenic (+20/‑210) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,215 A→G 8.1% intergenic (+21/‑209) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,222 A→G 7.6% intergenic (+28/‑202) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,781,051 C→G 9.4% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 6.9% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 6.9% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,807,638 T→G 6.5% E154A (GAA→GCA)  waaQ ← lipopolysaccharide core biosynthesis protein
RA 3,814,164 G→A 5.1% G78D (GGT→GAT)  dut → deoxyuridinetriphosphatase
RA 3,877,558 G→C 6.9% intergenic (‑93/+147) yidB ← / ← gyrB DUF937 family protein/DNA gyrase, subunit B
RA 3,878,894 T→A 7.4% D409V (GAC→GTC)  gyrB ← DNA gyrase, subunit B
RA 3,882,514 G→T 5.7% P406T (CCG→ACG)  dnaA ← chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator
RA 3,882,515 A→C 5.1% R405R (CGT→CGG dnaA ← chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator
RA 3,891,502 C→G 7.1% intergenic (+19/‑113) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,504 T→A 7.3% intergenic (+21/‑111) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,506 C→G 7.2% intergenic (+23/‑109) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,954,273 G→T 5.8% E266* (GAA→TAA) ‡ ilvD → dihydroxyacid dehydratase
RA 3,954,274 A→C 5.8% E266A (GAA→GCA) ‡ ilvD → dihydroxyacid dehydratase
RA 3,959,480 A→T 6.6% intergenic (+35/+52) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,959,481 C→G 6.6% intergenic (+36/+51) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,981,102 T→A 6.8% V72V (GTT→GTA yifK → putative APC family amino acid transporter
RA 3,992,624 T→G 46.2% L491R (CTG→CGG)  cyaA → adenylate cyclase
RA 3,993,145 C→A 57.0% R665S (CGT→AGT)  cyaA → adenylate cyclase
RA 4,015,333 A→T 6.3% intergenic (+19/+21) metE → / ← ysgA 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase
RA 4,017,222 Δ1 bp 5.5% intergenic (+30/‑111) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,040,661 G→A 6.7% intergenic (+25/+245) rrfA → / ← mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,216 T→C 10.1% Q73R (CAG→CGG) ‡ mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,217 G→A 10.5% Q73* (CAG→TAG) ‡ mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,220 T→C 10.6% S72G (AGC→GGC)  mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,221 G→A 10.5% A71A (GCC→GCT mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,049,986 G→T 9.2% noncoding (88/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,049,989 A→C 9.4% noncoding (91/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,051,259 G→T 10.7% noncoding (224/245 nt) csrC → CsrC sRNA sequesters CsrA, a carbon flux regulator
RA 4,051,262 A→C 8.9% noncoding (227/245 nt) csrC → CsrC sRNA sequesters CsrA, a carbon flux regulator
RA 4,060,261 G→T 11.7% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 11.6% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,070,413 T→G 5.7% intergenic (‑12/+102) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,088,091 G→C 6.9% intergenic (+34/+16) yiiG → / ← frvR DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain
RA 4,117,005 T→A 44.7% D73V (GAT→GTT)  glpK ← glycerol kinase
RA 4,117,047 G→T 61.7% S59Y (TCC→TAC)  glpK ← glycerol kinase
RA 4,127,251 C→T 8.1% intergenic (+26/+35) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,127,252 A→G 7.8% intergenic (+27/+34) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,130,005 G→A 5.2% L57L (TTG→TTA metL → Bifunctional aspartokinase/homoserine dehydrogenase 2
RA 4,130,008 T→C 5.2% I58I (ATT→ATC metL → Bifunctional aspartokinase/homoserine dehydrogenase 2
RA 4,185,907 G→T 7.4% Q186H (CAG→CAT rpoC → RNA polymerase, beta prime subunit
RA 4,185,913 G→T 6.6% L188L (CTG→CTT rpoC → RNA polymerase, beta prime subunit
RA 4,185,915 T→A 6.6% L189Q (CTG→CAG)  rpoC → RNA polymerase, beta prime subunit
RA 4,185,917 A→C 6.5% K190Q (AAG→CAG)  rpoC → RNA polymerase, beta prime subunit
RA 4,185,923 A→C 6.5% M192L (ATG→CTG)  rpoC → RNA polymerase, beta prime subunit
RA 4,213,131 C→T 5.0% noncoding (92/120 nt) rrfE → 5S ribosomal RNA of rrnE operon
RA 4,235,581 T→A 7.4% intergenic (+174/‑325) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA 4,245,108 T→G 5.3% intergenic (‑33/+121) malF ← / ← malE maltose transporter subunit/maltose transporter subunit
RA 4,245,110 T→G 5.2% intergenic (‑35/+119) malF ← / ← malE maltose transporter subunit/maltose transporter subunit
RA 4,245,111 C→A 5.4% intergenic (‑36/+118) malF ← / ← malE maltose transporter subunit/maltose transporter subunit
RA 4,245,113 C→A 5.1% intergenic (‑38/+116) malF ← / ← malE maltose transporter subunit/maltose transporter subunit
RA 4,274,740 G→A 6.6% intergenic (+79/+20) ssb → / ← yjcB single‑stranded DNA‑binding protein/putative inner membrane protein
RA 4,274,742 T→A 7.6% intergenic (+81/+18) ssb → / ← yjcB single‑stranded DNA‑binding protein/putative inner membrane protein
RA 4,274,744 T→C 6.4% intergenic (+83/+16) ssb → / ← yjcB single‑stranded DNA‑binding protein/putative inner membrane protein
RA 4,291,512 G→A 6.8% M1M (GTG→ATG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,291,513 T→C 6.8% M1A (GTG→GCG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,296,060 C→T 21.8% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,312,074 C→T 7.5% intergenic (‑32/+27) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,080 G→C 7.9% intergenic (‑38/+21) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,083 G→C 8.0% intergenic (‑41/+18) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,312,089 A→G 7.9% intergenic (‑47/+12) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,332,868 G→T 6.4% R135R (CGC→CGA basS ← sensory histidine kinase in two‑component regulatory system with BasR
RA 4,332,871 A→C 6.4% S134R (AGT→AGG basS ← sensory histidine kinase in two‑component regulatory system with BasR
RA 4,335,654 T→A 5.7% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 6.2% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,336,988 A→T 5.3% V15D (GTC→GAC)  adiC ← arginine:agmatine antiporter
RA 4,339,802 A→G 6.0% A240A (GCT→GCC adiA ← arginine decarboxylase
RA 4,339,805 C→T 6.0% Q239Q (CAG→CAA adiA ← arginine decarboxylase
RA 4,347,285 C→G 5.3% M14I (ATG→ATC fumB ← anaerobic class I fumarate hydratase (fumarase B)
RA 4,347,288 C→G 5.0% P13P (CCG→CCC fumB ← anaerobic class I fumarate hydratase (fumarase B)
RA 4,356,445 A→T 6.0% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 6.0% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 6.5% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 6.3% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,366,854 T→G 11.0% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 11.0% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,392,617 C→G 5.0% noncoding (35/76 nt) glyY → tRNA‑Gly
RA 4,395,454 T→C 6.4% C463C (TGT→TGC nnr → bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase
RA 4,395,455 G→A 5.2% A464T (GCA→ACA)  nnr → bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase
RA 4,424,465 G→T 5.3% intergenic (+79/+51) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,424,468 A→C 5.3% intergenic (+82/+48) ulaF → / ← yjfY L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic
RA 4,447,964 T→A 5.6% L24* (TTA→TAA)  ytfP → GGCT‑like protein
RA 4,450,962 T→G 5.4% intergenic (+44/‑96) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,450,963 C→A 5.4% intergenic (+45/‑95) ytfQ → / → ytfR galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase
RA 4,472,434 G→A 8.5% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 8.0% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,012 A→T 7.9% intergenic (+123/+22) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,016 G→C 8.0% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 8.3% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,520,500 Δ1 bp 7.7% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 7.7% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,537,639 T→G 5.2% intergenic (‑45/+20) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,640 T→G 5.2% intergenic (‑46/+19) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,643 C→A 5.3% intergenic (‑49/+16) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,644 C→A 5.3% intergenic (‑50/+15) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,549,932 T→A 5.5% intergenic (+222/+21) fimH → / ← gntP minor component of type 1 fimbriae/fructuronate transporter
RA 4,551,422 T→A 5.2% intergenic (‑126/‑214) gntP ← / → uxuA fructuronate transporter/mannonate hydrolase
RA 4,608,604 C→G 5.3% I140M (ATC→ATG rimI → ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA 4,608,607 C→G 5.3% I141M (ATC→ATG rimI → ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA 4,612,329 A→G 9.9% intergenic (+40/‑82) ytjA → / → yjjU uncharacterized protein/putative patatin‑like family phospholipase
RA 4,612,330 G→C 9.7% intergenic (+41/‑81) ytjA → / → yjjU uncharacterized protein/putative patatin‑like family phospholipase
RA 4,612,331 C→T 9.8% intergenic (+42/‑80) ytjA → / → yjjU uncharacterized protein/putative patatin‑like family phospholipase
RA 4,638,690 C→T 5.7% G171G (GGC→GGT creD → inner membrane protein
RA 4,638,691 A→G 5.7% T172A (ACC→GCC)  creD → inner membrane protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423741–3424234 3424547–3424238 5–807 87 [81] [79] 83 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 16653NA (NA)3 (0.020) 3/248 NT NA noncoding (1267/1345 nt) IS186 repeat region
?NC_000913 = 16691 NA (NA)noncoding (1305/1345 nt) IS186 repeat region
* ? NC_000913 = 66642141 (0.870)9 (0.060) 8/248 NT 9.1% noncoding (78/248 nt) REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
?NC_000913 2304955 = 46 (0.300)noncoding (539/655 nt) REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
* ? NC_000913 193444 =121 (0.750)6 (0.040) 6/242 NT 5.0% intergenic (+15/‑77) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
?NC_000913 193489 = 115 (0.770)intergenic (+60/‑32) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
* ? NC_000913 = 224374NA (NA)4 (0.030) 3/248 NT NA noncoding (604/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 = 224403 NA (NA)noncoding (633/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 224957 =NA (NA)9 (0.060) 16/250 NT NA noncoding (1187/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224974 = NA (NA)noncoding (1204/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 = 227444NA (NA)7 (0.040) 7/252 NT NA noncoding (1686/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
?NC_000913 = 227459 NA (NA)noncoding (1701/2904 nt) rrlH 23S ribosomal RNA of rrnH operon
* ? NC_000913 = 228744109 (0.670)63 (0.410) 23/250 NT 37.7% intergenic (+82/‑12) rrlH/rrfH 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon
?NC_000913 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913 274347 =NA (NA)5 (0.030) 5/248 NT NA noncoding (803/1195 nt) IS5 repeat region
?NC_000913 274410 = NA (NA)noncoding (740/1195 nt) IS5 repeat region
* ? NC_000913 274674 =NA (NA)3 (0.020) 3/252 NT NA noncoding (476/1195 nt) IS5 repeat region
?NC_000913 274711 = NA (NA)noncoding (439/1195 nt) IS5 repeat region
* ? NC_000913 = 288413113 (0.700)6 (0.040) 6/244 NT 5.2% coding (750/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
?NC_000913 = 288439 113 (0.750)coding (724/759 nt) yagI CP4‑6 prophage; putative DNA‑binding transcriptional regulator
* ? NC_000913 = 381669NA (NA)12 (0.080) 9/248 NT NA noncoding (410/1331 nt) IS2 repeat region
?NC_000913 = 381695 NA (NA)noncoding (436/1331 nt) IS2 repeat region
* ? NC_000913 448501 =172 (1.060)10 (0.070) 6/246 NT 6.1% coding (160/615 nt) cyoC cytochrome o ubiquinol oxidase subunit III
?NC_000913 448521 = 147 (0.970)coding (140/615 nt) cyoC cytochrome o ubiquinol oxidase subunit III
* ? NC_000913 = 686699143 (0.880)13 (0.090) 13/240 NT 8.7% intergenic (‑30/+140) gltJ/gltI glutamate/aspartate ABC transporter permease/glutamate/aspartate periplasmic binding protein
?NC_000913 = 686705 143 (0.960)intergenic (‑36/+134) gltJ/gltI glutamate/aspartate ABC transporter permease/glutamate/aspartate periplasmic binding protein
* ? NC_000913 = 730045NA (NA)5 (0.030) 4/252 NT NA coding (463/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 730067 NA (NA)coding (485/4194 nt) rhsC Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 = 758527NA (NA)8 (0.050) 5/258 NT NA intergenic (+122/‑179) sdhB/sucA succinate dehydrogenase, FeS subunit/2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding
?NC_000913 4618143 = NA (NA)noncoding (27/82 nt) REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 1021683 =158 (0.980)10 (0.060) 8/252 NT 6.1% coding (546/630 nt) sxy CRP‑S‑dependent promoter expression factor
?NC_000913 1021709 = 154 (0.990)coding (572/630 nt) sxy CRP‑S‑dependent promoter expression factor
* ? NC_000913 1207790 =52 (0.320)85 (0.600) 60/230 NT 60.4% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 66 (0.460)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780551 (0.310)72 (0.510) 56/230 NT 56.5% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 66 (0.460)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 12994980 (0.000)149 (0.950) 98/254 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 1512410 =164 (1.010)8 (0.050) 7/254 NT 5.1% coding (757/1146 nt) ydcS putative ABC transporter periplasmic binding protein
?NC_000913 1512451 = 138 (0.880)coding (798/1146 nt) ydcS putative ABC transporter periplasmic binding protein
* ? NC_000913 2340313 =NA (NA)7 (0.050) 6/248 NT NA noncoding (1/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 2340346 = NA (NA)noncoding (34/82 nt) REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 2506031 =143 (0.880)8 (0.050) 4/248 NT 6.0% coding (602/1086 nt) ypdF Xaa‑Pro aminopeptidase
?NC_000913 2506083 = 117 (0.760)coding (550/1086 nt) ypdF Xaa‑Pro aminopeptidase
* ? NC_000913 2728214 =NA (NA)17 (0.110) 8/254 NT NA noncoding (971/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
?NC_000913 2728240 = NA (NA)noncoding (945/2904 nt) rrlG 23S ribosomal RNA of rrnG operon
* ? NC_000913 2729443 =70 (0.430)10 (0.070) 5/242 NT 14.2% noncoding (2/76 nt) gltW tRNA‑Glu
?NC_000913 2729485 = 56 (0.370)intergenic (‑41/+131) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
* ? NC_000913 = 2964996150 (0.930)8 (0.050) 6/250 NT 5.3% coding (160/795 nt) thyA thymidylate synthetase
?NC_000913 = 2965032 144 (0.930)coding (124/795 nt) thyA thymidylate synthetase
* ? NC_000913 3296997 =NA (NA)4 (0.030) 4/252 NT NA intergenic (+13/+101) yraP/yraQ outer membrane lipoprotein/putative inner membrane permease
?NC_000913 3297033 = NA (NA)noncoding (35/84 nt) REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences
* ? NC_000913 = 3587439159 (0.980)10 (0.070) 8/242 NT 6.1% coding (675/744 nt) ugpQ glycerophosphodiester phosphodiesterase, cytosolic
?NC_000913 = 3587453 162 (1.080)coding (661/744 nt) ugpQ glycerophosphodiester phosphodiesterase, cytosolic
* ? NC_000913 3721045 =198 (1.220)418 (2.600) 170/260 NT 70.3% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 157 (0.980)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 3774236 =NA (NA)16 (0.100) 9/248 NT NA noncoding (1/99 nt) RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 3774261 = NA (NA)noncoding (26/99 nt) RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
* ? NC_000913 3943467 =NA (NA)16 (0.100) 9/250 NT 16.3% noncoding (33/76 nt) gltU tRNA‑Glu
?NC_000913 3943474 = 86 (0.530)noncoding (40/76 nt) gltU tRNA‑Glu
* ? NC_000913 3975245 =152 (0.940)13 (0.080) 11/256 NT 8.0% coding (100/1131 nt) wecE TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase
?NC_000913 3975274 = 152 (0.960)coding (129/1131 nt) wecE TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase
* ? NC_000913 4037397 =95 (0.590)10 (0.060) 4/258 NT 7.1% intergenic (+62/‑122) alaT/rrlA tRNA‑Ala/23S ribosomal RNA of rrnA operon
?NC_000913 4168483 = 169 (1.060)intergenic (+36/‑158) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
* ? NC_000913 = 4040683105 (0.650)37 (0.230) 6/258 NT 24.2% intergenic (+47/+223) rrfA/mobB 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B
?NC_000913 = 4213162 129 (0.810)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein