mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 5,525 | C→T | R98C (CGC→TGC) | yaaX → | DUF2502 domain‑containing protein YaaX |
| RA | 7,485 | T→C | S159G (AGC→GGC) | yaaJ ← | putative transporter YaaJ |
| RA | 60,693 | A→G | F858L (TTT→CTT) | rapA ← | RNA polymerase‑binding ATPase and RNAP recycling factor |
| RA | 110,484 | C→T | R736C (CGT→TGT) | secA → | protein translocation ATPase |
| RA | 112,822 | C→T | S133N (AGC→AAC) | coaE ← | dephospho‑CoA kinase |
| RA | 126,095 | A→G | E134G (GAA→GGA) | aceF → | pyruvate dehydrogenase, E2 subunit |
| RA | 135,603 | A→G | S288P (TCC→CCC) | speE ← | spermidine synthase |
| RA | 178,897 | A→G | V86A (GTG→GCG) | mtn ← | 5'‑methylthioadenosine/S‑adenosylhomocysteine nucleosidase |
| RA | 187,027 | T→C | N542D (AAC→GAC) | glnD ← | PII uridylyltransferase/uridylyl removing enzyme |
| RA | 232,233 | G→A | G103D (GGT→GAT) | yafE → | putative S‑adenosylmethionine‑dependent methyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 308,798 | C→T | V179I (GTC→ATC) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 346,213 | A→G | V42A (GTA→GCA) | yahN ← | putative amino acid exporter |
| RA | 378,007 | A→G | I121T (ATC→ACC) | frmB ← | S‑formylglutathione hydrolase FrmB |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 442,297 | A→G | E250G (GAA→GGA) | thiI → | tRNA uridine 4‑sulfurtransferase |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 626,907 | C→T | P280S (CCA→TCA) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase |
| RA | 692,847 | C→T | G178S (GGT→AGT) | ybeZ ← | PhoH‑like protein |
| RA | 693,757 | A→G | L400P (CTT→CCT) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 696,480 | T→C | noncoding (25/75 nt) | glnX ← | tRNA‑Gln |
| RA | 705,972 | (T)9→8 | intergenic (+82/‑121) | nagE → / → glnS | N‑acetylglucosamine specific PTS enzyme IIABC component/glutamine‑‑tRNA ligase |
| RA | 727,833 | C→T | W300* (TGG→TGA) | kdpA ← | K(+) transporting P‑type ATPase subunit KdpA |
| RA | 740,236 | A→G | T244A (ACG→GCG) | phr → | deoxyribodipyrimidine photolyase (photoreactivation) |
| RA | 741,817 | C→T | G247D (GGC→GAC) | dtpD ← | dipeptide:H(+) symporter DtpD |
| RA | 746,405 | A→G | L157L (TTA→TTG) | nei → | endonuclease VIII |
| RA | 761,926 | C→T | T135T (ACC→ACT) | sucB → | dihydrolipoyltranssuccinylase |
| RA | 773,688 | C→T | A216V (GCA→GTA) | cydB → | cytochrome bd‑I ubiquinol oxidase subunit II |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 869,757 | C→T | A116V (GCC→GTC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 873,432 | G→A | A152T (GCT→ACT) | pdeI → | putative c‑di‑GMP phosphodiesterase PdeI |
| RA | 879,588 | (T)6→7 | coding (847/1116 nt) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 886,986 | A→G | G118G (GGT→GGC) | ybjJ ← | inner membrane protein YbjJ |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,046,011 | (A)5→4 | coding (1935/2097 nt) | gfcD ← | putative lipoprotein GfcD |
| RA | 1,058,611 | T→C | G176G (GGT→GGC) | torC → | cytochrome c menaquinol dehydrogenase TorC |
| RA | 1,103,757 | A→G | intergenic (‑561/‑194) | csgD ← / → csgB | DNA‑binding transcriptional dual regulator CsgD/curlin, minor subunit |
| RA | 1,109,564 | C→T | P77L (CCA→CTA) | opgG → | osmoregulated periplasmic glucans (OPGs) biosynthesis protein G |
| RA | 1,128,274 | C→T | L146L (CTG→TTG) | murJ → | putative lipid II flippase MurJ |
| RA | 1,132,112 | A→G | S87G (AGC→GGC) | flgD → | flagellar biosynthesis, initiation of hook assembly |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,165,892 | (T)6→7 | intergenic (+207/‑193) | ycfP → / → ndh | UPF0227 protein YcfP/NADH:quinone oxidoreductase II |
| RA | 1,167,058 | (G)5→7 | coding (974/1305 nt) | ndh → | NADH:quinone oxidoreductase II |
| RA | 1,181,216 | C→T | A18T (GCA→ACA) | ycfZ ← | putative inner membrane protein |
| RA | 1,190,062 | A→G | L129P (CTC→CCC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,204,860 | A→G | T231A (ACC→GCC) pseudogene (460/1137 nt) |
ymfN → aaaE → |
e14 prophage; chimeric replication protein/phage terminase YmfN phage terminase |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,241,020 | A→G | V351A (GTG→GCG) | cvrA ← | putative K(+):H(+) antiporter |
| RA | 1,260,895 | A→C | intergenic (‑92/+33) | dauA ← / ← prs | aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase |
| RA | 1,261,174 | T→C | E234E (GAA→GAG) | prs ← | ribose‑phosphate diphosphokinase |
| RA | 1,286,729 | A→G | L7L (TTA→TTG) | ychS → | putative uncharacterized protein YchS |
| RA | 1,306,353 | T→C | V197A (GTG→GCG) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,351,196 | (G)7→6 | intergenic (‑157/+211) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,409,811 | A→G | T101A (ACC→GCC) | dbpA → | ATP‑dependent RNA helicase DbpA |
| RA | 1,431,864 | 2 bp→TT | coding (2816‑2817/3363 nt) | stfR → | Rac prophage; putative membrane protein |
| RA | 1,450,766 | G→A | A195V (GCG→GTG) | tynA ← | copper‑containing amine oxidase |
| RA | 1,458,126 | C→T | R210R (CGC→CGT) | paaF → | putative 2,3‑dehydroadipyl‑CoA hydratase |
| RA | 1,465,714 | A→G | pseudogene (323/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,494,083 | T→C | G538G (GGT→GGC) | trg → | methyl‑accepting chemotaxis protein Trg |
| RA | 1,495,469 | C→T | A61V (GCG→GTG) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,687 | T→C | T302A (ACT→GCT) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,554,860 | G→A | D270D (GAC→GAT) | maeA ← | malate dehydrogenase, NAD‑requiring |
| RA | 1,565,239 | A→G | F165F (TTT→TTC) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| RA | 1,594,248 | T→C | pseudogene (3839/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,634,642 | C→T | G82S (GGC→AGC) | tfaQ ← | Qin prophage; putative tail fiber assembly protein TfaQ |
| RA | 1,666,566 | A→G | S418G (AGC→GGC) A218A (GCT→GCC) |
clcB → ynfK ← |
putative chloride:H(+) antiporter ClcB putative dethiobiotin synthetase |
| RA | 1,669,419 | C→T | L58L (TTG→TTA) | ynfL ← | putative DNA‑binding transcriptional regulator |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,714,326 | (T)9→8 | intergenic (+55/‑51) | dtpA → / → gstA | dipeptide/tripeptide:H(+) symporter DtpA/glutathione S‑transferase GstA |
| RA | 1,717,884 | C→T | A42T (GCT→ACT) | pdxH ← | pyridoxal 5‑phosphate synthase |
| RA | 1,728,630 | C→T | A95V (GCG→GTG) | rnt → | RNase T |
| RA | 1,758,128 | T→C | S200G (AGC→GGC) | ldtE ← | L,D‑transpeptidase LdtE |
| RA | 1,769,478 | (G)7→8 | coding (405/1113 nt) | ydiK → | putative transporter YdiK |
| RA | 1,794,316 | G→A | C279C (TGC→TGT) | btuC ← | vitamin B12 ABC transporter membrane subunit |
| RA | 1,809,491 | (G)5→6 | coding (112/669 nt) | hxpB → | hexitol phosphatase B |
| RA | 1,818,550 | (C)7→9 | intergenic (‑50/+55) | chbF ← / ← chbR | monoacetylchitobiose‑6‑phosphate hydrolase/DNA‑binding transcriptional dual regulator ChbR |
| RA | 1,860,673 | T→C | E220E (GAA→GAG) | ydjL ← | putative zinc‑binding dehydrogenase YdjL |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,894,349 | (A)8→9 | coding (217/300 nt) | yoaC → | DUF1889 domain‑containing protein YoaC |
| RA | 1,910,008 | Δ1 bp | coding (92/792 nt) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| RA | 1,940,023 | T→C | R57R (CGA→CGG) | lpxM ← | myristoyl‑acyl carrier protein‑dependent acyltransferase |
| RA | 1,940,663 | T→C | T325A (ACG→GCG) | mepM ← | peptidoglycan DD‑endopeptidase MepM |
| RA | 1,957,484 | T→C | T217A (ACC→GCC) | torY ← | cytochrome c quinol dehydrogenase TorY |
| RA | 1,962,324 | T→C | V118A (GTT→GCT) | yecT → | protein YecT |
| RA | 1,967,136 | G→A | A101V (GCG→GTG) | cheY ← | chemotaxis protein CheY |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,068,622 | A→G | intergenic (‑1301/‑13) | insH‑6 ← / → yoeA | CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA |
| RA | 2,095,848 | T→C | W242R (TGG→CGG) L2P (CTG→CCG) |
hisA → hisF → |
1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino]imidazole‑4‑ carboxamide isomerase imidazole glycerol phosphate synthase subunit HisF |
| RA | 2,099,367 | T→C | T83A (ACC→GCC) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,160,491 | G→A | A702A (GCG→GCA) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,225,211 | Δ1 bp | coding (421/588 nt) | yohC ← | putative inner membrane protein |
| RA | 2,235,140 | A→G | T370A (ACC→GCC) | preT → | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreT |
| RA | 2,241,486 | G→A | T61T (ACC→ACT) | galS ← | DNA‑binding transcriptional dual regulator GalS |
| RA | 2,338,351 | T→C | H357R (CAC→CGC) | gyrA ← | DNA gyrase subunit A |
| RA | 2,339,161 | T→C | D87G (GAC→GGC) | gyrA ← | DNA gyrase subunit A |
| RA | 2,344,855 | T→C | intergenic (‑118/‑10) | ypaB ← / → nrdA | protein YpaB/ribonucleoside‑diphosphate reductase 1 subunit alpha |
| RA | 2,363,540 | G→A | H32Y (CAT→TAT) | yfaY ← | IPR008135 CinA family protein YfaY |
| RA | 2,445,720 | T→C | E222G (GAG→GGG) | mepA ← | peptidoglycan DD‑endopeptidase/peptidoglycan LD‑endopeptidase |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,448,886 | C→T | P94L (CCG→CTG) | smrB → | putative endonuclease SmrB |
| RA | 2,462,889 | (C)9→8 | intergenic (+243/‑123) | fadL → / → yfdF | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor/protein YfdF |
| RA | 2,514,208 | T→C | S389S (AGT→AGC) | nupC → | nucleoside:H(+) symporter NupC |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,579,484 | T→C | A273A (GCT→GCC) | talA → | transaldolase A |
| RA | 2,627,231 | C→T | A570T (GCT→ACT) | pdeF ← | cyclic di‑GMP phosphodiesterase PdeF |
| RA | 2,750,687 | T→C | T8A (ACG→GCG) | grpE ← | nucleotide exchange factor GrpE |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,826,281 | T→C | G150G (GGT→GGC) | srlA → | sorbitol‑specific PTS enzyme IIC2 component |
| RA | 2,849,765 | G→A | H29Y (CAC→TAC) | hycB ← | formate hydrogenlyase subunit HycB |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,884,854 | T→A | D789V (GAT→GTT) | cas3 ← | CRISPR‑associated endonuclease/helicase Cas3 |
| RA | 2,945,208 | T→C | Y212C (TAC→TGC) | tcdA ← | tRNA threonylcarbamoyladenosine dehydratase |
| RA | 2,946,849 | G→A | A110A (GCC→GCT) | mltA ← | membrane‑bound lytic murein transglycosylase A |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,981,582 | T→C | S201G (AGC→GGC) | araE ← | arabinose:H(+) symporter |
| RA | 2,988,052 | G→A | A173T (GCT→ACT) | yqeH → | putative LuxR family transcriptional regulator YqeH |
| RA | 3,001,304 | (G)7→8 | coding (960/2259 nt) | xdhA → | putative xanthine dehydrogenase molybdenum‑binding subunit XdhA |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,093,323 | T→C | G129G (GGT→GGC) | yqgE → | DUF179 domain‑containing protein YqgE |
| RA | 3,100,556 | A→G | V58A (GTT→GCT) | ansB ← | L‑asparaginase 2 |
| RA | 3,101,039 | (C)7→8 | coding (585/720 nt) | yggN ← | putative EcfF |
| RA | 3,123,348 | G→A | A153V (GCG→GTG) | glcB ← | malate synthase G |
| RA | 3,129,750 | T→C | T156A (ACA→GCA) | yghO ← | putative DNA‑binding transcriptional regulator YghO |
| RA | 3,208,832 | G→A | R270H (CGC→CAC) | ttdT → | L‑tartrate:succinate antiporter |
| RA | 3,247,457 | G→A | intergenic (+29/‑316) | exuR → / → yqjA | DNA‑binding transcriptional repressor ExuR/DedA family protein YqjA |
| RA | 3,269,956 | T→C | intergenic (+354/+260) | yhaC → / ← rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component |
| RA | 3,311,564 | C→T | G41S (GGC→AGC) | rpsO ← | 30S ribosomal subunit protein S15 |
| RA | 3,327,342 | G→A | A108V (GCA→GTA) | rlmE ← | 23S rRNA 2'‑O‑ribose U2552 methyltransferase |
| RA | 3,350,184 | (C)7→8 | coding (276/654 nt) | elbB ← | low activity glyoxalase ElbB |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,471,380 | T→C | intergenic (‑51/+20) | tufA ← / ← fusA | translation elongation factor Tu 1/elongation factor G |
| RA | 3,483,399 | T→C | P66P (CCT→CCC) | yheT → | putative hydrolase YheT |
| RA | 3,495,499 | T→C | F497L (TTC→CTC) | nirB → | nitrite reductase catalytic subunit NirB |
| RA | 3,546,924 | G→A | L122L (CTG→CTA) | gntT → | high‑affinity gluconate transporter |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,590,504 | C→T | L136L (CTG→CTA) | ugpA ← | sn‑glycerol 3‑phosphate ABC transporter membrane subunit UgpA |
| RA | 3,610,787 | G→A | A316V (GCC→GTC) | yhhS ← | putative transporter YhhS |
| RA | 3,612,522 | (G)5→6 | coding (658/1050 nt) | yhhT → | putative transporter YhhT |
| RA | 3,708,172 | (A)7→8 | intergenic (‑467/+444) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,728,118 | (C)8→9 | coding (1254/1455 nt) | xylB ← | xylulokinase |
| RA | 3,795,971 | C→T | A348V (GCC→GTC) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,819,902 | T→C | K423K (AAA→AAG) | ligB ← | DNA ligase B |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,988,542 | C→T | P175P (CCG→CCA) | hemX ← | PF04375 family protein HemX |
| RA | 4,020,399 | A→G | R58R (CGA→CGG) | ubiB → | ubiquinone biosynthesis protein UbiB |
| RA | 4,037,157 | T→C | noncoding (17/77 nt) | ileT → | tRNA‑Ile |
| RA | 4,060,333 | A→G | intergenic (+103/‑114) | bipA → / → yihL | ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL |
| RA | 4,073,963 | A→G | E75E (GAA→GAG) | yihV → | 6‑deoxy‑6‑sulfofructose kinase |
| RA | 4,078,054 | (A)5→4 | coding (606/990 nt) | yiiD → | putative acetyltransferase YiiD |
| MC JC | 4,180,672 | (CTG)4→3 | coding (113‑115/366 nt) | rplL → | 50S ribosomal subunit protein L12 |
| RA | 4,193,779 | T→C | A142A (GCA→GCG) | thiE ← | thiamine phosphate synthase |
| RA | 4,225,841 | A→G | T672A (ACC→GCC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,227,040 | A→G | A1071A (GCA→GCG) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,287,910 | T→C | H49H (CAT→CAC) | nrfA → | cytochrome c552 nitrite reductase |
| RA | 4,291,056 | C→T | A194V (GCG→GTG) | nrfD → | putative menaquinol‑cytochrome c reductase subunit NrfD |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,309,833 | A→G | V383A (GTT→GCT) | alsA ← | D‑allose ABC transporter ATP binding subunit |
| RA | 4,365,583 | A→G | G397G (GGT→GGC) | dcuA ← | C4‑dicarboxylate transporter DcuA |
| RA | 4,375,232 | A→G | R142R (CGT→CGC) | epmB ← | lysine 2,3‑aminomutase |
| RA | 4,403,541 | C→T | T81I (ACC→ATC) | hflC → | regulator of FtsH protease |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,465,733 | A→G | Y150H (TAC→CAC) | treB ← | trehalose‑specific PTS enzyme IIBC component |
| RA | 4,469,600 | A→G | D659G (GAC→GGC) | mgtA → | Mg(2(+)) importing P‑type ATPase |
| RA | 4,557,577 | G→A | A238V (GCC→GTC) | hypT ← | DNA‑binding transcriptional dual regulator HypT |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1432379–1432653 | 1434251–1433375 | 723–1873 | 36 [34] | [34] 38 | [stfR]–ynaE | [stfR],tfaR,pinR,ynaE |
| * | * | ÷ | NC_000913 | 3423759–3424550 | 3424550 | 1–792 | 36 [33] | [33] 35 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 103 (0.940) | 63/268 | 0.3 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 186 (1.650) | 183 (1.630) | 89/274 | 0.0 | 66.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 132 (1.170) | 75/276 | 0.1 | 98.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 2 (0.020) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | 4542682 = | 94 (0.830) | 39 (0.370) | 31/258 | 2.1 | 30.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 93 (0.880) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 94 (0.830) | 33 (0.310) | 25/258 | 2.9 | 26.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 93 (0.880) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||