mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,020 | G→A | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← | Transposase |
| RA | TrimmedAssembly_T66_contig_1 | 88,572 | T→C | K89E (AAA→GAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| RA | TrimmedAssembly_T66_contig_1 | 88,584 | G→A | Q85* (CAA→TAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| RA | TrimmedAssembly_T66_contig_1 | 88,588 | G→A | N83N (AAC→AAT) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| MC JC | TrimmedAssembly_T66_contig_8 | 36,638 | Δ14 bp | intergenic (‑140/+297) | rasttk_feature_annotation_tool=elepa@bvbrc ← / ← rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein/hypothetical protein |
| RA | TrimmedAssembly_T66_contig_9 | 36 | T→C | intergenic (–/+223) | – / ← rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| RA | TrimmedAssembly_T66_contig_9 | 44 | (T)10→9 | intergenic (–/+215) | – / ← rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | TrimmedAssembly_T66_contig_3 | 1 | 1 | 1 | NA [0] | [0] 287 | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | CRISPR‑associated protein Cas1 |
| * | * | ÷ | TrimmedAssembly_T66_contig_39 | 1 | 94–2 | 2–94 | NA [0] | [125] 135 | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aggregation promoting factor |
| * | * | ÷ | TrimmedAssembly_T66_contig_5 | 187145 | 187153 | 9 | 138 [134] | [0] NA | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| * | * | ÷ | TrimmedAssembly_T66_contig_7 | 138618 | 138687 | 70 | 104 [101] | [0] NA | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Thr‑TGT/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_1 | 1 = | 0 (0.000) | 216 (0.700) | 72/260 | 0.1 | 100% | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 153 (0.900) | 57/260 | 0.5 | 66.7% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_1 | = 655835 | 0 (0.000) | intergenic (‑78/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 251 (1.180) | 77/260 | 0.0 | 76.6% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_14 | 1 = | 0 (0.000) | intergenic (–/+1) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 229 (1.200) | 68/260 | 0.2 | 75.0% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_16 | 1 = | 0 (0.000) | intergenic (–/‑89) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/PTS system, beta‑glucoside‑specific IIB component / PTS system, beta‑glucoside‑specific IIC component / PTS system, beta‑glucoside‑specific IIA component | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 254 (1.200) | 72/260 | 0.1 | 76.8% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_24 | = 19315 | 0 (0.000) | intergenic (+87/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 151 (0.830) | 60/260 | 0.3 | 49.7% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_39 | 1 = | NA (NA) | intergenic (–/+397) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aggregation promoting factor | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 153 (0.900) | 207 (0.990) | 66/260 | 0.2 | 73.0% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_40 | 1 = | 0 (0.000) | intergenic (–/+211) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88614 | 151 (0.880) | 277 (1.220) | 72/258 | 0.1 | 78.7% | coding (223/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 2 = | 0 (0.000) | coding (2/474 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | CRISPR‑associated protein Cas1 | |||||
| * | ? | TrimmedAssembly_T66_contig_11 | = 96142 | 0 (0.000) | 164 (0.930) | 35/204 | 2.0 | 76.6% | intergenic (+314/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_9 | = 72 | 100 (0.510) | intergenic (–/+187) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_12 | 1 = | 0 (0.000) | 107 (0.300) +61 bp |
29/138 | 0.7 | 100% | intergenic (–/‑8) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Asn‑GTT |
| ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | TrimmedAssembly_T66_contig_12 | = 94931 | 0 (0.000) | 189 (0.600) | 61/260 | 0.5 | 100% | intergenic (+79/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | = 1096 | 0 (0.000) | intergenic (+10/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_13 | 1 = | 0 (0.000) | 129 (0.580) | 56/254 | 0.7 | 71.1% | intergenic (–/‑320) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_17 | 66634 = | 105 (0.580) | intergenic (+348/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_13 | = 94334 | 0 (0.000) | 234 (0.900) | 76/258 | 0.3 | 71.9% | intergenic (+21/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Ala‑CGC/– |
| ? | TrimmedAssembly_T66_contig_9 | = 132 | 183 (0.730) | intergenic (–/+127) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_14 | = 91033 | 0 (0.000) | 271 (0.770) | 80/260 | 0.2 | 100% | intergenic (+263/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_15 | 1 = | 0 (0.000) | 180 (0.370) +60 bp |
46/140 | 0.1 | 100% | intergenic (–/‑70) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Transcriptional regulator, RpiR family |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_15 | = 90630 | 0 (0.000) | 153 (0.900) +28 bp |
46/204 | 0.6 | 79.8% | intergenic (+107/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_17 | 66638 = | 99 (0.540) | intergenic (+352/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 1 = | 0 (0.000) | 89 (0.680) +52 bp |
32/156 | 0.8 | 73.0% | intergenic (–/+7) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aspartokinase (EC 2.7.2.4) |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 110 (0.440) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 66634 = | 105 (0.570) | 131 (0.630) | 48/260 | 1.4 | 71.4% | intergenic (+348/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_5 | 1 = | 0 (0.000) | intergenic (–/+439) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 66638 = | 99 (0.540) | 114 (0.780) +28 bp |
36/204 | 1.5 | 74.6% | intergenic (+352/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_20 | 1 = | 0 (0.000) | intergenic (–/+632) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Lipoteichoic acid synthase LtaS Type IIa | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | = 66737 | 4 (0.020) | 1078 (1.700) +A |
112/258 | 0.0 | 99.8% | intergenic (+451/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_32 | 1 = | 0 (0.000) | intergenic (–/‑42) | –/rasttk_feature_creation_tool=RNA_reps_SSU_rRNA | –/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA | |||||
| * | ? | TrimmedAssembly_T66_contig_18 | 1 = | 0 (0.000) | 215 (0.630) | 83/260 | 0.0 | 100% | intergenic (–/+69) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | = 1203 | 0 (0.000) | intergenic (+58/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_18 | = 53854 | 0 (0.000) | 198 (0.680) | 66/260 | 0.4 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_37 | = 853 | 0 (0.000) | intergenic (‑310/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_19 | 1 = | 0 (0.000) | 320 (0.900) | 87/260 | 0.1 | 100% | intergenic (–/+149) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_35 | = 1096 | 0 (0.000) | intergenic (+10/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_19 | = 46603 | 0 (0.000) | 131 (0.640) +22 bp |
38/216 | 2.4 | 72.3% | intergenic (‑53/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_4 | 245808 = | 121 (0.520) | intergenic (‑7/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | 1 = | 0 (0.000) | 129 (0.220) +35 bp |
47/190 | 0.5 | 100% | intergenic (–/‑1) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | 2 = | 0 (0.000) | 474 (0.820) +36 bp |
91/188 | 0.0 | 100% | coding (1/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | = 25 | 31 (0.100) | 74 (0.190) +67 bp |
15/126 | 1.0 | 90.8% | coding (24/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | = 83 | 177 (0.580) | 127 (0.480) | 43/256 | 2.8 | 59.3% | coding (82/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_5 | = 187151 | 0 (0.000) | intergenic (+38/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | = 291973 | 0 (0.000) | 186 (0.370) +60 bp |
43/140 | 0.4 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | 16208 = | 89 (0.470) | 62 (0.400) | 31/214 | 2.8 | 44.3% | intergenic (‑66/‑80) | rasttk_feature_annotation_tool=elepa@bvbrc/rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_20 | 16359 = | 83 (0.540) | coding (72/117 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | = 16230 | 90 (0.480) | 73 (0.470) | 35/214 | 2.1 | 48.2% | intergenic (‑88/‑58) | rasttk_feature_annotation_tool=elepa@bvbrc/rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_20 | = 16335 | 83 (0.540) | coding (48/117 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | = 39141 | 0 (0.000) | 85 (0.650) | 32/156 | 0.9 | 62.0% | intergenic (+93/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | L‑lactate dehydrogenase (EC 1.1.1.27)/– |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 104 (0.690) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_21 | = 29409 | 0 (0.000) | 174 (0.590) | 54/260 | 1.2 | 100% | intergenic (‑1/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_37 | 1 = | 0 (0.000) | intergenic (–/+9) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 173 (0.520) | 62/260 | 0.3 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_24 | 1 = | 0 (0.000) | 271 (0.740) | 79/260 | 0.2 | 100% | intergenic (–/‑221) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Competence‑stimulating peptide ABC transporter ATP‑binding protein ComA |
| ? | TrimmedAssembly_T66_contig_34 | 1 = | 0 (0.000) | intergenic (–/‑119) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_25 | 1 = | 0 (0.000) | 205 (0.610) | 70/260 | 0.1 | 100% | intergenic (–/‑494) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_25 | = 5544 | 0 (0.000) | 86 (0.180) +60 bp |
32/140 | 0.4 | 100% | intergenic (+242/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_26 | = 3462 | 0 (0.000) | 123 (1.070) | 45/260 | 0.5 | 100% | coding (1/702 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_29 | 1 = | NA (NA) | coding (228/228 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_27 | 1 = | 0 (0.000) | 233 (0.640) | 78/260 | 0.2 | 100% | intergenic (–/‑57) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | = 1203 | 0 (0.000) | intergenic (+58/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_27 | = 3273 | 0 (0.000) | 307 (0.830) | 86/260 | 0.0 | 100% | intergenic (‑110/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Adenine specific DNA methylase Mod/– |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | 326 (0.470) | 77/260 | 0.2 | 100% | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | TrimmedAssembly_T66_contig_4 | = 245870 | 0 (0.000) | intergenic (‑69/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 298 (0.390) +41 bp |
68/178 | 1.3 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | 176059 = | 261 (0.920) | 183 (0.700) | 74/240 | 0.3 | 41.5% | coding (556/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | = 178058 | 274 (1.040) | coding (242/633 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Aggregation promoting factor | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | = 176241 | 303 (1.060) | 158 (0.600) +CAGCAGAACT |
62/240 | 0.9 | 37.2% | coding (374/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 176327 = | 274 (0.960) | coding (288/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | 177930 = | 359 (1.260) | 177 (0.740) | 64/260 | 0.2 | 49.6% | coding (370/633 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Aggregation promoting factor |
| ? | TrimmedAssembly_T66_contig_39 | = 663 | 0 (0.000) | intergenic (‑2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Aggregation promoting factor/– | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | = 262583 | 0 (0.000) | 122 (0.250) +60 bp |
40/140 | 0.5 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_31 | 1 = | 0 (0.000) | 208 (0.620) | 68/260 | 0.2 | 100% | intergenic (–/+71) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | 1 = | 0 (0.000) | intergenic (–/‑119) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | 262 (0.670) +50 bp |
57/160 | 0.0 | 83.7% | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_7 | = 137493 | 167 (0.950) | noncoding (69/71 nt) | rasttk_feature_creation_tool=tRNAscan‑SE | tRNA‑Gly‑TCC | |||||
| * | ? | TrimmedAssembly_T66_contig_33 | 1 = | 0 (0.000) | 85 (0.640) +52 bp |
29/156 | 0.6 | 72.1% | intergenic (–/‑193) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 110 (0.440) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_33 | = 1499 | 0 (0.000) | 127 (0.270) +60 bp |
34/140 | 0.2 | 100% | coding (585/585 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | 107 (0.230) +60 bp |
38/140 | 0.1 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– |
| ? | TrimmedAssembly_T66_contig_7 | 1 = | 0 (0.000) | intergenic (–/+104) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/SAM‑dependent methyltransferase | |||||
| * | ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | 126 (0.260) +60 bp |
38/140 | 0.5 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– |
| ? | TrimmedAssembly_T66_contig_9 | = 133707 | 0 (0.000) | intergenic (‑1/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_37 | 1 = | 0 (0.000) | 225 (0.790) | 68/260 | 0.3 | 100% | intergenic (–/+9) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein |
| ? | TrimmedAssembly_T66_contig_8 | = 137664 | 0 (0.000) | intergenic (‑2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Histidinol‑phosphate aminotransferase (EC 2.6.1.9)/– | |||||
| * | ? | TrimmedAssembly_T66_contig_4 | 245808 = | 121 (0.520) | 133 (0.720) +22 bp |
43/216 | 1.4 | 72.6% | intergenic (‑7/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– |
| ? | TrimmedAssembly_T66_contig_6 | = 156776 | 0 (0.000) | intergenic (‑82/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Thr‑GGT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_40 | = 631 | 0 (0.000) | 233 (0.630) | 70/260 | 0.1 | 100% | coding (1/420 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | 89 (0.210) +57 bp |
33/146 | 0.5 | 100% | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family |
| ? | TrimmedAssembly_T66_contig_6 | 1 = | 0 (0.000) | intergenic (–/+72) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Pyruvate oxidase (EC 1.2.3.3) | |||||