breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 6,137 A→G 5.1% L108S (TTG→TCG)  yaaA ← peroxide resistance protein, lowers intracellular iron
RA 9,907 A→C 12.2% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 12.5% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 13,583 T→G 5.3% V474G (GTT→GGT)  dnaK → chaperone Hsp70, with co‑chaperone DnaJ
RA 13,586 C→A 5.0% T475N (ACC→AAC)  dnaK → chaperone Hsp70, with co‑chaperone DnaJ
RA 15,318 G→A 5.5% intergenic (+20/‑127) dnaJ → / → insL1 chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA 15,319 T→C 5.5% intergenic (+21/‑126) dnaJ → / → insL1 chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA 22,773 A→T 8.1% E128V (GAA→GTA)  ileS → isoleucyl‑tRNA synthetase
RA 22,776 A→T 7.5% Y129F (TAC→TTC)  ileS → isoleucyl‑tRNA synthetase
RA 36,358 C→A 12.2% A489A (GCG→GCT caiC ← putative crotonobetaine/carnitine‑CoA ligase
RA 53,376 G→A 6.6% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,379 T→C 5.9% E13G (GAG→GGG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 83,587 A→C 10.0% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 9.6% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 87,881 A→G 6.8% intergenic (+33/‑147) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,884 T→A 7.4% intergenic (+36/‑144) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,887 C→T 7.3% intergenic (+39/‑141) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 111,013 G→A 7.7% intergenic (+29/‑31) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 111,016 T→C 7.4% intergenic (+32/‑28) secA → / → mutT preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase
RA 120,154 Δ1 bp 7.6% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 7.9% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 167,918 G→C 7.7% Q145H (CAG→CAC fhuA → ferrichrome outer membrane transporter
RA 169,748 T→A 6.3% intergenic (+21/‑30) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 169,749 T→A 5.7% intergenic (+22/‑29) fhuA → / → fhuC ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase
RA 242,344 C→G 7.4% P320P (CCG→CCC fadE ← acyl coenzyme A dehydrogenase
RA 252,589 G→C 7.3% A97P (GCA→CCA)  yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 252,594 G→C 7.4% W98C (TGG→TGC yafO → mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system
RA 256,449 T→C 11.4% intergenic (+14/‑78) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,454 C→G 12.2% intergenic (+19/‑73) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,459 G→A 12.4% intergenic (+24/‑68) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 272,330:1 +G 5.7% intergenic (+141/‑250) insN → / → eyeA pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge
RA 289,256 G→C 9.0% intergenic (‑94/+45) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 289,257 T→A 9.8% intergenic (‑95/+44) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 292,302 C→G 8.4% intergenic (+71/+20) yagJ → / ← yagK CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein
RA 314,258 G→A 5.9% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 336,866 G→C 6.2% G30A (GGC→GCC)  yahF → putative NAD(P)‑binding succinyl‑CoA synthase
RA 374,682 C→T 5.1% P272L (CCG→CTG) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,683 G→C 5.0% P272P (CCG→CCC) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,688 G→C 5.1% R274P (CGA→CCA) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 374,689 A→G 5.1% R274R (CGA→CGG) ‡ mhpE → 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I
RA 385,724 T→A 5.5% W165R (TGG→AGG)  tauA → taurine ABC transporter periplasmic binding protein
RA 420,942 G→T 5.5% intergenic (+32/‑44) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 420,945 A→C 5.9% intergenic (+35/‑41) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 420,946 T→A 5.4% intergenic (+36/‑40) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 475,971 C→G 10.3% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 10.2% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 481,225 T→G 9.9% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 481,228 C→A 9.9% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 533,846 T→C 6.2% intergenic (+20/‑70) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 533,849 G→A 6.0% intergenic (+23/‑67) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 543,091 G→C 6.2% intergenic (+58/+170) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,094 G→C 6.2% intergenic (+61/+167) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,210 A→T 5.1% intergenic (+177/+51) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 569,160 G→T 5.5% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 6.1% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 594,946 C→A 5.1% Q166H (CAG→CAT cusR ← response regulator in two‑component regulatory system with CusS
RA 604,752 G→T 6.4% intergenic (‑89/+19) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 604,753 A→C 6.3% intergenic (‑90/+18) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 644,030 A→G 5.8% intergenic (‑63/+167) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,034 T→C 5.8% intergenic (‑67/+163) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,036 A→T 6.1% intergenic (‑69/+161) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,038 G→A 6.1% intergenic (‑71/+159) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 644,042 C→T 6.1% intergenic (‑75/+155) rnk ← / ← rna regulator of nucleoside diphosphate kinase/ribonuclease I
RA 657,531 T→G 5.8% intergenic (+30/+24) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,533 A→T 5.7% intergenic (+32/+22) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 657,535 C→A 5.8% intergenic (+34/+20) cspE → / ← flc constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein
RA 659,204 C→T 5.5% intergenic (+54/+47) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,205 A→T 5.7% intergenic (+55/+46) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,206 A→T 5.7% intergenic (+56/+45) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 659,207 A→G 5.7% intergenic (+57/+44) tatE → / ← lipA TatABCE protein translocation system subunit/lipoate synthase
RA 691,390 G→C 6.1% A132G (GCC→GGC)  ybeX ← putative ion transport
RA 710,170 C→T 7.4% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 8.0% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 725,276 G→A 6.8% Y587Y (TAC→TAT kdpB ← potassium translocating ATPase, subunit B
RA 725,279 T→C 5.2% K586K (AAA→AAG kdpB ← potassium translocating ATPase, subunit B
RA 774,356 C→G 7.5% P16P (CCC→CCG ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 774,358 T→A 7.2% L17Q (CTG→CAG)  ybgE → putative inner membrane protein in cydABX‑ybgE operon
RA 779,659 C→A 5.1% P21H (CCC→CAC) ‡ ybgF → periplasmic TolA‑binding protein
RA 779,660 C→G 5.1% P21P (CCC→CCG) ‡ ybgF → periplasmic TolA‑binding protein
RA 779,661 T→G 5.0% W22G (TGG→GGG)  ybgF → periplasmic TolA‑binding protein
RA 781,668 C→T 5.4% intergenic (+16/‑417) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,670 A→T 5.3% intergenic (+18/‑415) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 781,672 A→G 5.3% intergenic (+20/‑413) lysQ → / → nadA tRNA‑Lys/quinolinate synthase, subunit A
RA 843,338 C→G 6.1% A715P (GCG→CCG)  ybiO ← mechanosensitive channel protein, intermediate conductance
RA 843,342 A→T 5.8% V713V (GTT→GTA) ‡ ybiO ← mechanosensitive channel protein, intermediate conductance
RA 843,343 A→T 5.9% V713D (GTT→GAT) ‡ ybiO ← mechanosensitive channel protein, intermediate conductance
RA 843,347 C→G 6.5% G712R (GGC→CGC)  ybiO ← mechanosensitive channel protein, intermediate conductance
RA 848,350 C→T 6.9% intergenic (‑346/+58) glnH ← / ← dps glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein
RA 848,356 T→A 7.1% intergenic (‑352/+52) glnH ← / ← dps glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein
RA 848,362 A→G 7.2% intergenic (‑358/+46) glnH ← / ← dps glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein
RA 887,393 T→A 5.0% intergenic (‑54/‑30) ybjJ ← / → rcdA putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator
RA 899,656 T→C 5.5% intergenic (+11/+188) rlmC → / ← artJ 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA 899,657 G→A 5.5% intergenic (+12/+187) rlmC → / ← artJ 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein
RA 915,080 G→C 7.2% intergenic (‑223/+272) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 915,081 G→C 8.1% intergenic (‑224/+271) ybjE ← / ← aqpZ putative transporter/aquaporin Z
RA 922,314:1 +C 7.2% intergenic (+21/+52) macB → / ← cspD macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog
RA 958,769 C→G 5.0% intergenic (+28/‑43) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,771 A→T 5.0% intergenic (+30/‑41) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 958,773 C→G 5.6% intergenic (+32/‑39) serC → / → aroA 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase
RA 964,148 T→C 6.9% intergenic (+36/‑172) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,150 T→A 6.9% intergenic (+38/‑170) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 964,152 G→A 7.5% intergenic (+40/‑168) ihfB → / → ycaI integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein
RA 987,560 G→C 7.9% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 8.1% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,015,912 T→A 10.4% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,018,983 A→T 8.6% intergenic (+46/+30) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,018,986 A→T 8.5% intergenic (+49/+27) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,039,479 G→A 5.2% V62I (GTC→ATC) ‡ cbdB → cytochrome bd‑II oxidase, subunit II
RA 1,039,480 T→C 5.1% V62A (GTC→GCC) ‡ cbdB → cytochrome bd‑II oxidase, subunit II
RA 1,041,937 T→G 5.2% intergenic (+22/+93) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,041,940 C→A 5.5% intergenic (+25/+90) appA → / ← etk phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation
RA 1,075,515 G→T 5.8% A1123E (GCG→GAG)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,075,518 A→C 5.2% L1122R (CTC→CGC)  putA ← fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase
RA 1,100,789 G→T 6.1% intergenic (+2/+62) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,791 G→C 6.1% intergenic (+4/+60) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,793 A→C 6.1% intergenic (+6/+58) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,113,544 G→A 5.0% intergenic (+138/‑35) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,546 T→A 5.0% intergenic (+140/‑33) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,131,310 A→T 5.1% N98I (AAT→ATT)  flgB → flagellar component of cell‑proximal portion of basal‑body rod
RA 1,141,148 C→T 9.3% intergenic (+162/+34) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,150 G→A 9.3% intergenic (+164/+32) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,151 T→C 9.4% intergenic (+165/+31) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,141,153 A→G 9.3% intergenic (+167/+29) flgL → / ← rne flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein
RA 1,147,548 T→G 8.1% intergenic (+8/‑73) rpmF → / → plsX 50S ribosomal subunit protein L32/putative phosphate acyltransferase
RA 1,147,549 C→A 8.1% intergenic (+9/‑72) rpmF → / → plsX 50S ribosomal subunit protein L32/putative phosphate acyltransferase
RA 1,147,980 G→T 6.5% K120N (AAG→AAT plsX → putative phosphate acyltransferase
RA 1,147,986 G→C 6.8% L122L (CTG→CTC plsX → putative phosphate acyltransferase
RA 1,147,987 G→C 6.7% E123Q (GAG→CAG)  plsX → putative phosphate acyltransferase
RA 1,147,993 A→C 6.8% I125L (ATT→CTT)  plsX → putative phosphate acyltransferase
RA 1,153,208 T→C 5.2% intergenic (+28/‑92) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,213 T→A 5.3% intergenic (+33/‑87) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,214 T→A 5.1% intergenic (+34/‑86) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,219 G→A 5.3% intergenic (+39/‑81) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,159,335 G→T 6.6% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 6.6% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,169,380 T→C 6.2% intergenic (+50/+32) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,382 C→G 7.0% intergenic (+52/+30) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,169,384 G→A 7.1% intergenic (+54/+28) bhsA → / ← ldtC biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein
RA 1,170,758 T→C 5.2% Q1069Q (CAA→CAG) ‡ mfd ← transcription‑repair coupling factor
RA 1,170,759 T→A 5.2% Q1069L (CAA→CTA) ‡ mfd ← transcription‑repair coupling factor
RA 1,170,762 T→A 5.1% Q1068L (CAG→CTG) ‡ mfd ← transcription‑repair coupling factor
RA 1,170,763 G→A 5.3% Q1068* (CAG→TAG) ‡ mfd ← transcription‑repair coupling factor
RA 1,174,077 G→A 8.7% intergenic (‑113/+15) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,174,080 T→C 8.7% intergenic (‑116/+12) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,211,610 A→G 7.8% intergenic (+33/+70) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,612 A→T 8.0% intergenic (+35/+68) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,211,614 C→T 7.9% intergenic (+37/+66) icdC → / ← iraM pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor
RA 1,232,481 C→T 9.0% intergenic (+27/+19) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,232,484 A→G 6.8% intergenic (+30/+16) umuC → / ← dsbB translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I
RA 1,253,830 C→G 7.1% S708T (AGT→ACT)  ycgV ← putative adhesin
RA 1,285,190 T→A 5.3% L18I (TTA→ATA)  narJ → molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
RA 1,285,193 T→A 5.6% W19R (TGG→AGG)  narJ → molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1
JC JC 1,293,015 IS1 (–) +8 bp 5.8% intergenic (‑93/‑505) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
JC JC 1,293,091 IS5 (+) +4 bp 12.4% intergenic (‑169/‑433) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
RA 1,311,830 A→G 10.4% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 10.5% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,324,837 A→C 7.3% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 7.3% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 8.1% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,330,396:1 +T 10.1% intergenic (+15/+21) sohB → / ← yciN inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA 1,330,399 A→T 10.0% intergenic (+18/+18) sohB → / ← yciN inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA 1,330,402 Δ1 bp 10.0% intergenic (+21/+15) sohB → / ← yciN inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN
RA 1,344,033 A→G 8.0% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 8.1% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 7.9% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,355,187 A→G 5.7% V95A (GTG→GCG) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,355,188 C→T 5.7% V95M (GTG→ATG) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,371,933 T→A 6.4% L9I (TTA→ATA)  ycjN → putative ABC sugar transporter periplasmic binding protein
RA 1,371,936 T→A 6.3% S10T (TCA→ACA)  ycjN → putative ABC sugar transporter periplasmic binding protein
RA 1,382,003 A→G 5.0% A19A (GCA→GCG ompG → outer membrane porin G
RA 1,426,178 A→T 5.4% intergenic (+96/‑276) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,445,616 G→C 5.8% A856P (GCA→CCA)  ydbH → putative membrane‑anchored protein, function unknown
RA 1,449,050 T→A 12.0% intergenic (+32/+26) feaB → / ← tynA phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring
RA 1,504,888 T→G 5.1% intergenic (+23/+17) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,504,893 G→A 5.1% intergenic (+28/+12) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,524,458:1 +T 5.9% intergenic (+90/+23) yncE → / ← ansP ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter
RA 1,524,463 Δ1 bp 5.9% intergenic (+95/+18) yncE → / ← ansP ATP‑binding protein, periplasmic, function unknown/L‑asparagine transporter
RA 1,541,077 G→C 7.1% A505G (GCC→GGC)  narZ ← nitrate reductase 2 (NRZ), alpha subunit
RA 1,603,724 A→C 7.5% T236P (ACC→CCC)  lsrC → autoinducer 2 import system permease protein
RA 1,603,735 G→T 7.3% G239G (GGG→GGT lsrC → autoinducer 2 import system permease protein
RA 1,608,704 A→G 7.9% S107P (TCG→CCG)  yneE ← bestrophin family putative inner membrane protein
RA 1,608,707 C→T 8.1% D106N (GAT→AAT)  yneE ← bestrophin family putative inner membrane protein
RA 1,625,976 A→C 27.0% F469V (TTC→GTC)  dcp ← dipeptidyl carboxypeptidase II
RA 1,648,450 C→T 5.4% intergenic (+109/‑58) dicA → / → ydfA Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein
RA 1,648,451 A→G 5.4% intergenic (+110/‑57) dicA → / → ydfA Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein
RA 1,650,147 G→A 5.6% pseudogene (70/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,650,148 T→C 5.5% pseudogene (71/765 nt) ydfE → Qin prophage; pseudogene;Phage or Prophage Related
RA 1,657,895 A→T 6.1% intergenic (+25/‑174) ynfD → / → ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA 1,657,898 A→T 6.2% intergenic (+28/‑171) ynfD → / → ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA 1,657,901 A→T 6.2% intergenic (+31/‑168) ynfD → / → ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
RA 1,660,438 A→G 5.3% S790S (TCA→TCG ynfE → putative selenate reductase, periplasmic
RA 1,660,442 C→G 5.1% L792V (CTG→GTG)  ynfE → putative selenate reductase, periplasmic
RA 1,660,446 C→T 5.7% A793V (GCG→GTG)  ynfE → putative selenate reductase, periplasmic
RA 1,685,527 A→G 100% G354G (GGT→GGC fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,689,817 C→A 9.0% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,819 A→T 9.0% intergenic (+68/‑33) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,689,821 T→G 8.8% intergenic (+70/‑31) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,693,416 A→G 5.1% L283P (CTG→CCG) ‡ uidB ← glucuronide transporter
RA 1,693,417 G→C 5.3% L283V (CTG→GTG) ‡ uidB ← glucuronide transporter
RA 1,693,418 C→T 5.2% P282P (CCG→CCA uidB ← glucuronide transporter
RA 1,797,388 G→T 5.9% P186Q (CCG→CAG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,797,391 A→C 5.9% L185R (CTG→CGG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,799,370 Δ1 bp 9.3% intergenic (‑100/+23) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,799,374:1 +T 9.7% intergenic (‑104/+19) pheM ← / ← rplT phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20
RA 1,808,680 T→A 5.3% intergenic (+24/+17) yniA → / ← yniB fructosamine kinase family protein/putative inner membrane protein
RA 1,808,682 C→G 5.6% intergenic (+26/+15) yniA → / ← yniB fructosamine kinase family protein/putative inner membrane protein
RA 1,808,684 T→A 5.6% intergenic (+28/+13) yniA → / ← yniB fructosamine kinase family protein/putative inner membrane protein
RA 1,836,906 C→T 5.7% S278S (AGC→AGT ynjB → putative ABC transporter periplasmic binding protein
RA 1,850,715 Δ1 bp 5.8% intergenic (+22/‑145) sppA → / → ansA protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1
RA 1,850,719:1 +T 5.9% intergenic (+26/‑141) sppA → / → ansA protease IV (signal peptide peptidase)/cytoplasmic L‑asparaginase 1
RA 1,851,204 A→C 5.7% T115T (ACA→ACC ansA → cytoplasmic L‑asparaginase 1
RA 1,865,682 G→C 11.2% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,868,859 Δ1 bp 5.8% intergenic (+17/‑96) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,868,865:1 +G 5.6% intergenic (+23/‑90) yeaG → / → yeaH protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein
RA 1,891,842 C→T 5.1% G465D (GGT→GAT)  yoaA ← putative ATP‑dependent helicase, DinG family
RA 1,910,295 A→T 6.1% D7V (GAC→GTC)  yebQ → putative transporter
RA 1,932,094 C→G 8.1% intergenic (+35/+21) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,095 T→A 8.2% intergenic (+36/+20) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
RA 1,932,096 C→G 8.1% intergenic (+37/+19) purT → / ← eda phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,985,112 C→G 10.5% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 2,020,838 T→C 13.5% V251A (GTG→GCG)  fliM → flagellar motor switching and energizing component
RA 2,020,841 G→A 14.6% R252H (CGC→CAC)  fliM → flagellar motor switching and energizing component
RA 2,028,158 G→C 8.3% intergenic (‑141/+30) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,159 T→A 8.2% intergenic (‑142/+29) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,028,160 G→C 8.4% intergenic (‑143/+28) yedQ ← / ← yodC putative membrane‑anchored diguanylate cyclase/uncharacterized protein
RA 2,032,336 G→C 10.0% intergenic (‑19/+48) dcm ← / ← yedJ DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase
RA 2,044,729 T→A 6.3% intergenic (+105/‑209) asnT → / → yeeJ tRNA‑Asn/putative adhesin
RA 2,062,354 T→A 10.0% intergenic (+19/+37) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,355 T→G 10.1% intergenic (+20/+36) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,356 C→A 10.0% intergenic (+21/+35) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,062,357 T→A 10.1% intergenic (+22/+34) asnV → / ← ldtA tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein
RA 2,074,691 C→G 7.6% intergenic (+33/‑88) flu → / → yeeR CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein
RA 2,079,004 G→C 8.7% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,081,688 A→T 6.7% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,093,965 C→G 5.2% D166E (GAC→GAG hisB → histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,255,991 A→T 6.2% K213* (AAA→TAA) ‡ yeiL → putative transcriptional regulator
RA 2,255,992 A→T 6.3% K213I (AAA→ATA) ‡ yeiL → putative transcriptional regulator
RA 2,270,602 T→C 7.1% intergenic (+57/‑124) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,270,605 G→A 7.2% intergenic (+60/‑121) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,286,311 C→G 7.2% intergenic (+24/+79) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,313 T→A 7.4% intergenic (+26/+77) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,315 C→G 7.7% intergenic (+28/+75) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,305,085 A→G 11.3% intergenic (+692/+23) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,086 C→G 11.5% intergenic (+693/+22) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,087 C→T 11.5% intergenic (+694/+21) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,314,800 A→C 7.4% Q438P (CAG→CCG) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,314,801 G→T 7.3% Q438H (CAG→CAT) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,318,095 C→G 100% L594F (TTG→TTC rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,356,734 G→C 7.0% intergenic (+23/‑170) glpC → / → yfaD anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
RA 2,356,737 T→C 7.1% intergenic (+26/‑167) glpC → / → yfaD anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
RA 2,356,738 G→A 6.9% intergenic (+27/‑166) glpC → / → yfaD anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
RA 2,356,741 G→C 7.0% intergenic (+30/‑163) glpC → / → yfaD anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein
RA 2,364,995 T→G 10.0% intergenic (+16/+23) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,364,998 C→A 9.3% intergenic (+19/+20) nudI → / ← ais nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase
RA 2,391,414 C→G 5.0% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 5.1% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,428,699 A→T 5.0% intergenic (‑73/+22) ubiX ← / ← purF 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase
RA 2,432,995 C→T 6.2% intergenic (‑53/+17) folC ← / ← accD bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit
RA 2,462,677 A→T 6.9% intergenic (+31/‑335) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,678 T→A 6.7% intergenic (+32/‑334) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,462,679 A→T 6.7% intergenic (+33/‑333) fadL → / → yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
RA 2,482,839 C→G 7.0% L167F (TTG→TTC emrK ← multidrug resistance efflux pump membrane fusion protein
RA 2,497,023 A→T 5.0% intergenic (+31/+34) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,497,024 T→G 5.1% intergenic (+32/+33) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,497,026 A→T 5.1% intergenic (+34/+31) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,518,082 C→G 6.7% noncoding (35/76 nt) alaX ← tRNA‑Ala
RA 2,561,205 A→T 8.0% intergenic (+307/‑163) yffL → / → yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,561,206 A→T 8.0% intergenic (+308/‑162) yffL → / → yffM CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
RA 2,566,490 C→T 5.8% G132D (GGT→GAT)  eutA ← reactivating factor for ethanolamine ammonia lyase
RA 2,566,493 G→C 5.8% A131G (GCC→GGC)  eutA ← reactivating factor for ethanolamine ammonia lyase
RA 2,566,496 A→G 5.5% I130T (ATC→ACC)  eutA ← reactivating factor for ethanolamine ammonia lyase
RA 2,581,762 G→A 8.5% A339V (GCC→GTC)  ypfG ← DUF1176 family protein
RA 2,581,765 T→C 8.2% D338G (GAC→GGC)  ypfG ← DUF1176 family protein
RA 2,589,122 G→A 5.7% G510S (GGC→AGC)  acrD → aminoglycoside/multidrug efflux system
RA 2,589,125 T→C 5.8% F511L (TTT→CTT)  acrD → aminoglycoside/multidrug efflux system
RA 2,596,873 Δ1 bp 7.8% intergenic (‑136/+32) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,596,878:1 +G 8.0% intergenic (‑141/+27) ypfJ ← / ← purC putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase
RA 2,616,606 G→C 5.2% A171A (GCG→GCC bepA → OM protein maintenance and assembly metalloprotease and chaperone, periplasmic
RA 2,616,609 G→C 5.7% M172I (ATG→ATC bepA → OM protein maintenance and assembly metalloprotease and chaperone, periplasmic
RA 2,632,584 A→T 5.8% intergenic (‑49/+20) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,632,586 G→C 5.9% intergenic (‑51/+18) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,632,588 A→T 5.9% intergenic (‑53/+16) guaA ← / ← guaB GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase
RA 2,637,433 C→T 8.5% intergenic (‑77/+41) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,438 T→G 6.7% intergenic (‑82/+36) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,439 C→A 6.9% intergenic (‑83/+35) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,444 A→G 6.9% intergenic (‑88/+30) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,653,367 G→A 7.9% intergenic (+28/‑488) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,653,372 T→C 7.6% intergenic (+33/‑483) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,656,386 C→T 5.4% intergenic (‑28/+150) pepB ← / ← iscX aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA 2,656,391 G→A 5.3% intergenic (‑33/+145) pepB ← / ← iscX aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA 2,656,392 T→C 5.3% intergenic (‑34/+144) pepB ← / ← iscX aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA 2,656,397 A→G 5.6% intergenic (‑39/+139) pepB ← / ← iscX aminopeptidase B/Fe(2+) donor and activity modulator for cysteine desulfurase
RA 2,666,972 C→T 6.2% W292* (TGG→TAG)  hcaT ← putative 3‑phenylpropionic transporter
RA 2,666,978 A→G 5.3% L290S (TTG→TCG) ‡ hcaT ← putative 3‑phenylpropionic transporter
RA 2,666,979 A→T 5.4% L290M (TTG→ATG) ‡ hcaT ← putative 3‑phenylpropionic transporter
RA 2,666,980 C→T 5.1% A289A (GCG→GCA hcaT ← putative 3‑phenylpropionic transporter
RA 2,666,986 A→G 5.2% T287T (ACT→ACC hcaT ← putative 3‑phenylpropionic transporter
RA 2,700,862 G→A 6.4% P46L (CCG→CTG) ‡ acpS ← holo‑[acyl‑carrier‑protein] synthase 1
RA 2,700,863 G→C 6.5% P46A (CCG→GCG) ‡ acpS ← holo‑[acyl‑carrier‑protein] synthase 1
RA 2,700,865 T→A 6.8% Q45L (CAG→CTG)  acpS ← holo‑[acyl‑carrier‑protein] synthase 1
RA 2,700,867 G→C 6.9% H44Q (CAC→CAG) ‡ acpS ← holo‑[acyl‑carrier‑protein] synthase 1
RA 2,700,868 T→C 6.9% H44R (CAC→CGC) ‡ acpS ← holo‑[acyl‑carrier‑protein] synthase 1
RA 2,704,304 A→G 9.1% intergenic (‑241/+31) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,306 A→T 9.0% intergenic (‑243/+29) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,704,308 C→T 9.1% intergenic (‑245/+27) rnc ← / ← lepB RNase III/leader peptidase (signal peptidase I)
RA 2,707,320 A→T 5.5% intergenic (‑196/+2) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,707,321 A→T 5.5% intergenic (‑197/+1) lepA ← / ← rseC back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component
RA 2,715,258 A→G 5.5% A21A (GCT→GCC) ‡ yfiE ← putative DNA‑binding transcriptional regulator
RA 2,715,259 G→C 5.9% A21G (GCT→GGT) ‡ yfiE ← putative DNA‑binding transcriptional regulator
RA 2,715,260 C→T 5.7% A21T (GCT→ACT) ‡ yfiE ← putative DNA‑binding transcriptional regulator
RA 2,716,030 T→G 7.4% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 6.6% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,725,630 Δ1 bp 86.4% coding (117/1299 nt) kgtP ← alpha‑ketoglutarate transporter
RA 2,731,073 A→T 11.6% noncoding (85/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,731,074 A→T 11.3% noncoding (84/1542 nt) rrsG ← 16S ribosomal RNA of rrnG operon
RA 2,762,221 G→T 5.9% I440I (ATC→ATA) ‡ yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,762,222 A→C 6.1% I440S (ATC→AGC) ‡ yfjK ← radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage
RA 2,775,085 T→C 5.9% intergenic (+64/‑460) yfjW → / → ypjI CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA 2,775,089 T→A 5.9% intergenic (+68/‑456) yfjW → / → ypjI CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA 2,775,093 G→A 6.5% intergenic (+72/‑452) yfjW → / → ypjI CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
RA 2,778,123 G→T 6.3% intergenic (+341/+23) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,778,124 A→C 6.3% intergenic (+342/+22) ypjF → / ← ypjA CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter
RA 2,801,056 A→T 7.6% N31I (AAT→ATT)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,814,174 T→A 6.1% intergenic (+20/+44) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,814,175 T→A 6.2% intergenic (+21/+43) emrB → / ← luxS multidrug efflux system protein/S‑ribosylhomocysteine lyase
RA 2,822,673 C→T 7.3% intergenic (‑34/+35) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,678 G→T 7.4% intergenic (‑39/+30) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,679 A→C 7.5% intergenic (‑40/+29) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,822,684 A→G 7.3% intergenic (‑45/+24) recX ← / ← recA regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor
RA 2,838,222 A→T 7.9% intergenic (‑117/+32) hydN ← / ← ascG formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor
RA 2,838,231 A→T 8.2% intergenic (‑126/+23) hydN ← / ← ascG formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor
RA 2,842,437 G→T 5.3% intergenic (+23/+136) ascB → / ← hycI cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE
RA 2,842,438 A→C 5.3% intergenic (+24/+135) ascB → / ← hycI cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE
RA 2,866,487 G→C 5.5% intergenic (+22/+72) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,866,488 G→C 5.5% intergenic (+23/+71) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,873,915 A→G 7.9% H26H (CAT→CAC) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,917 G→C 8.4% H26D (CAT→GAT) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,919 C→T 7.9% G25D (GGT→GAT)  cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,906,608 G→C 5.7% intergenic (+25/+35) ygcG → / ← eno TPM domain protein, putative phosphatase/enolase
RA 2,918,017 C→T 7.3% intergenic (+204/+28) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,019 G→T 7.1% intergenic (+206/+26) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,020 A→C 7.6% intergenic (+207/+25) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,918,022 A→G 8.4% intergenic (+209/+23) barA → / ← gudD hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1
RA 2,971,146 T→C 8.4% intergenic (+13/‑125) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,151 T→C 8.0% intergenic (+18/‑120) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,154 G→A 8.0% intergenic (+21/‑117) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,159 G→A 8.6% intergenic (+26/‑112) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,972,652 A→T 6.9% intergenic (+15/+17) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 2,972,653 A→T 7.0% intergenic (+16/+16) tas → / ← lplT putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter
RA 3,007,466 T→C 6.8% intergenic (+14/‑44) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,007,473 G→A 6.8% intergenic (+21/‑37) ygeW → / → ygeX putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent
RA 3,020,510 G→T 9.2% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 9.3% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 9.4% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,033,627 T→A 5.1% intergenic (+14/+30) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,033,628 T→A 5.1% intergenic (+15/+29) idi → / ← lysS isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive
RA 3,061,817 G→C 10.1% W323S (TGG→TCG) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,061,818 G→C 10.2% W323C (TGG→TGC) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,090,842 G→C 6.2% A166P (GCG→CCG)  endA → DNA‑specific endonuclease I
RA 3,092,774:1 +A 5.1% coding (897/951 nt) gshB → glutathione synthetase
RA 3,131,524 A→G 6.4% S295S (AGT→AGC) ‡ yghQ ← putative inner membrane polysaccharide flippase
RA 3,131,525 C→T 5.7% S295N (AGT→AAT) ‡ yghQ ← putative inner membrane polysaccharide flippase
RA 3,135,356 T→C 5.5% Q339R (CAG→CGG) ‡ pitB ← phosphate transporter
RA 3,135,357 G→A 5.5% Q339* (CAG→TAG) ‡ pitB ← phosphate transporter
RA 3,156,590 C→A 10.8% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 10.8% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,160,640 G→C 7.6% T169T (ACC→ACG ygiQ ← Radical SAM superfamily protein
RA 3,160,645 G→C 7.7% R168G (CGT→GGT)  ygiQ ← Radical SAM superfamily protein
RA 3,171,852 C→T 6.1% intergenic (+19/+27) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,857 A→T 6.9% intergenic (+24/+22) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,858 A→T 6.1% intergenic (+25/+21) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,171,863 A→G 6.0% intergenic (+30/+16) qseC → / ← ygiZ quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein
RA 3,180,497 Δ1 bp 6.8% coding (77/1161 nt) ygiC → ATP‑Grasp family ATPase
RA 3,180,505 G→T 9.4% E29* (GAG→TAG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,180,506 A→C 10.2% E29A (GAG→GCG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,183,345:1 +T 10.0% intergenic (+22/+468) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,183,350 Δ1 bp 9.6% intergenic (+27/+463) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,197,226 C→G 6.0% V806L (GTG→CTG)  glnE ← fused deadenylyltransferase/adenylyltransferase for glutamine synthetase
RA 3,231,459 G→A 5.0% intergenic (+220/‑206) ygjK → / → fadH alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
RA 3,231,460 C→A 5.0% intergenic (+221/‑205) ygjK → / → fadH alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
RA 3,231,466 G→C 6.1% intergenic (+227/‑199) ygjK → / → fadH alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
RA 3,231,467 G→C 5.0% intergenic (+228/‑198) ygjK → / → fadH alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked
RA 3,238,702 T→C 5.1% A41A (GCT→GCC alx → putative membrane‑bound redox modulator
RA 3,238,705 G→A 5.1% A42A (GCG→GCA alx → putative membrane‑bound redox modulator
RA 3,239,609 T→G 7.2% intergenic (+64/‑335) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,610 C→G 6.3% intergenic (+65/‑334) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,611 C→A 6.3% intergenic (+66/‑333) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,250,989 G→C 6.5% intergenic (+35/‑35) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,990 A→T 6.5% intergenic (+36/‑34) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,991 A→T 6.2% intergenic (+37/‑33) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,250,992 G→C 6.2% intergenic (+38/‑32) yqjF → / → yqjG putative quinol oxidase subunit/putative S‑transferase
RA 3,256,441 T→G 6.7% T71P (ACG→CCG)  yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,442 G→C 6.8% G70G (GGC→GGG) ‡ yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,443 C→A 6.5% G70V (GGC→GTC) ‡ yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,450 C→T 5.9% V68I (GTT→ATT)  yhaM ← putative L‑serine dehydratase alpha chain
RA 3,258,251 T→A 5.4% intergenic (‑241/+34) yhaO ← / ← tdcG putative transporter/L‑serine dehydratase 3, anaerobic
RA 3,258,252 T→A 5.3% intergenic (‑242/+33) yhaO ← / ← tdcG putative transporter/L‑serine dehydratase 3, anaerobic
RA 3,322,698 A→G 6.3% intergenic (‑193/+35) secG ← / ← glmM preprotein translocase membrane subunit/phosphoglucosamine mutase
RA 3,322,700 A→G 5.4% intergenic (‑195/+33) secG ← / ← glmM preprotein translocase membrane subunit/phosphoglucosamine mutase
RA 3,322,703 C→T 5.3% intergenic (‑198/+30) secG ← / ← glmM preprotein translocase membrane subunit/phosphoglucosamine mutase
RA 3,322,705 C→T 5.3% intergenic (‑200/+28) secG ← / ← glmM preprotein translocase membrane subunit/phosphoglucosamine mutase
RA 3,324,952 A→G 6.8% intergenic (‑41/+49) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,955 A→G 6.7% intergenic (‑44/+46) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,956 C→T 6.7% intergenic (‑45/+45) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,959 C→T 6.4% intergenic (‑48/+42) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,328,182 A→T 9.6% intergenic (+99/+57) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,183 T→A 9.2% intergenic (+100/+56) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,184 A→T 8.7% intergenic (+101/+55) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,332,822 G→A 6.4% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 6.1% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,368,982 G→C 8.5% intergenic (+28/+32) yhcG → / ← yhcH DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily
RA 3,407,293 T→A 9.8% intergenic (+27/‑82) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,294 T→A 10.0% intergenic (+28/‑81) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,407,295 T→A 10.0% intergenic (+29/‑80) accC → / → yhdT acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein
RA 3,418,628 G→A 8.5% intergenic (+17/‑414) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,418,629 T→C 8.6% intergenic (+18/‑413) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,423,229 T→G 9.2% intergenic (+35/+194) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,423,230 T→A 9.3% intergenic (+36/+193) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,423,231 T→A 10.0% intergenic (+37/+192) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,423,232 C→A 9.1% intergenic (+38/+191) yhdZ → / ← rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
RA 3,439,588 G→C 6.5% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 6.9% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,458,556 C→A 61.9% S73* (TCG→TAG)  gspE → general secretory pathway component, cryptic
RA 3,511,549 G→C 5.2% R266G (CGA→GGA)  yhfZ ← putative DNA‑binding transcriptional regulator
RA 3,522,778 C→G 5.8% intergenic (‑27/‑93) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,522,779 T→A 6.0% intergenic (‑28/‑92) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,522,780 C→G 5.9% intergenic (‑29/‑91) hofM ← / → mrcA DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase
RA 3,539,805 G→A 5.4% intergenic (+99/‑358) yhgF → / → feoA putative transcriptional accessory protein/ferrous iron transporter, protein A
RA 3,539,815 A→T 6.8% intergenic (+109/‑348) yhgF → / → feoA putative transcriptional accessory protein/ferrous iron transporter, protein A
RA 3,539,816 T→A 6.9% intergenic (+110/‑347) yhgF → / → feoA putative transcriptional accessory protein/ferrous iron transporter, protein A
RA 3,539,817 A→T 6.9% intergenic (+111/‑346) yhgF → / → feoA putative transcriptional accessory protein/ferrous iron transporter, protein A
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,587,224 A→T 5.8% Q94H (CAA→CAT yhhA → DUF2756 family protein
RA 3,587,225 A→T 5.8% M95L (ATG→TTG)  yhhA → DUF2756 family protein
RA 3,601,824 G→C 5.1% P88R (CCC→CGC)  ftsX ← putative ABC transporter permease
RA 3,642,358 T→A 9.6% intergenic (+27/+22) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,642,361 T→A 9.7% intergenic (+30/+19) dtpB → / ← rsmJ dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent
RA 3,697,969 C→G 5.8% H504Q (CAC→CAG bcsE → cellulose production protein
RA 3,708,595 G→A 8.6% intergenic (‑890/+21) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,596 T→A 8.5% intergenic (‑891/+20) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,597 T→C 8.4% intergenic (‑892/+19) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,714,163:1 +T 5.3% coding (2232/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,714,168 Δ1 bp 5.2% coding (2227/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,720,793 G→T 6.7% Q38H (CAG→CAT insJ → IS150 transposase A
RA 3,720,797 A→C 6.1% R40R (AGG→CGG) ‡ insJ → IS150 transposase A
RA 3,720,798 G→T 6.0% R40M (AGG→ATG) ‡ insJ → IS150 transposase A
RA 3,720,802 A→C 6.0% T41T (ACA→ACC insJ → IS150 transposase A
RA 3,774,207 C→T 8.9% intergenic (+13/‑217) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,214 C→T 9.1% intergenic (+20/‑210) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,215 A→G 9.3% intergenic (+21/‑209) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,222 A→G 8.5% intergenic (+28/‑202) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,781,051 C→G 9.5% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 8.2% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 8.2% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,888,212 Δ1 bp 5.3% intergenic (+20/‑223) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,219 T→A 6.1% intergenic (+27/‑216) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,888,224:1 +A 5.1% intergenic (+32/‑211) mnmE → / → tnaC tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide
RA 3,897,613 G→A 5.9% P36P (CCG→CCA cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,897,614 C→G 5.4% L37V (CTG→GTG) ‡ cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,897,615 T→C 6.0% L37P (CTG→CCG) ‡ cbrB → PRK09823 family inner membrane protein, creBC regulon
RA 3,900,542 A→T 7.4% I12I (ATT→ATA yieL ← putative xylanase
RA 3,900,545 A→T 7.3% A11A (GCT→GCA yieL ← putative xylanase
RA 3,918,291 C→T 5.6% intergenic (‑26/+25) atpG ← / ← atpA F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA 3,918,296 C→T 5.0% intergenic (‑31/+20) atpG ← / ← atpA F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
RA 3,918,916 T→A 5.5% K314N (AAA→AAT atpA ← F1 sector of membrane‑bound ATP synthase, alpha subunit
JC JC 3,922,629 IS5 (–) +4 bp 15.7% intergenic (‑189/+425) atpI ← / ← rsmG ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein
RA 3,959,480 A→T 6.2% intergenic (+35/+52) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,959,481 C→G 6.1% intergenic (+36/+51) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,963,293:1 +C 5.8% coding (937/1485 nt) gpp ← guanosine pentaphosphatase/exopolyphosphatase
RA 3,963,299 Δ1 bp 5.6% coding (931/1485 nt) gpp ← guanosine pentaphosphatase/exopolyphosphatase
RA 4,015,333 A→T 6.4% intergenic (+19/+21) metE → / ← ysgA 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase
RA 4,017,216:1 +A 5.7% intergenic (+24/‑117) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,017,222 Δ1 bp 5.6% intergenic (+30/‑111) udp → / → rmuC uridine phosphorylase/DNA recombination protein
RA 4,041,216 T→C 6.5% Q73R (CAG→CGG) ‡ mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,217 G→A 6.3% Q73* (CAG→TAG) ‡ mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,220 T→C 6.5% S72G (AGC→GGC)  mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,041,221 G→A 6.4% A71A (GCC→GCT mobB ← molybdopterin‑guanine dinucleotide biosynthesis protein B
RA 4,049,986 G→T 7.4% noncoding (88/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,049,989 A→C 7.0% noncoding (91/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
RA 4,056,038 T→G 5.5% D101A (GAC→GCC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,056,039 C→A 5.4% D101Y (GAC→TAC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,060,261 G→T 5.9% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 6.0% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,070,469 A→C 5.6% intergenic (‑68/+46) yihR ← / ← yihS putative sulphoquinovose mutarotase/sulphoquinovose isomerase
RA 4,127,251 C→T 7.1% intergenic (+26/+35) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,127,252 A→G 7.8% intergenic (+27/+34) rpmE → / ← yiiX 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein
RA 4,130,005 G→A 7.0% L57L (TTG→TTA metL → Bifunctional aspartokinase/homoserine dehydrogenase 2
RA 4,130,008 T→C 5.5% I58I (ATT→ATC metL → Bifunctional aspartokinase/homoserine dehydrogenase 2
RA 4,223,854 T→C 5.9% R9R (CGT→CGC metH → homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
RA 4,223,855 G→A 6.0% A10T (GCG→ACG)  metH → homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent
RA 4,291,512 G→A 8.3% M1M (GTG→ATG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,291,513 T→C 8.3% M1A (GTG→GCG) †‡ nrfE → heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
RA 4,296,060 C→T 21.6% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,307,294 A→T 7.5% L169Q (CTG→CAG)  alsK ← D‑allose kinase
RA 4,307,298 G→A 7.1% P168S (CCC→TCC)  alsK ← D‑allose kinase
RA 4,312,083 G→C 5.2% intergenic (‑41/+18) alsB ← / ← alsR D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR
RA 4,335,654 T→A 8.6% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 8.6% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,356,445 A→T 5.1% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 5.1% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 8.3% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 8.9% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,366,854 T→G 5.6% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 5.6% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,386,126 C→T 5.2% R1082H (CGT→CAT)  mscM ← mechanosensitive channel protein, miniconductance
RA 4,386,129 A→G 5.2% M1081T (ATG→ACG)  mscM ← mechanosensitive channel protein, miniconductance
RA 4,388,496 T→A 6.1% Q292L (CAG→CTG)  mscM ← mechanosensitive channel protein, miniconductance
RA 4,392,617 C→G 5.1% noncoding (35/76 nt) glyY → tRNA‑Gly
RA 4,426,592 T→A 10.5% intergenic (+35/+36) rplI → / ← yjfZ 50S ribosomal subunit protein L9/uncharacterized protein
RA 4,447,964 T→A 5.9% L24* (TTA→TAA)  ytfP → GGCT‑like protein
RA 4,470,951 A→C 5.9% intergenic (‑38/+35) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,952 T→C 6.0% intergenic (‑39/+34) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,957 G→A 5.8% intergenic (‑44/+29) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,958 G→T 5.8% intergenic (‑45/+28) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,472,434 G→A 5.9% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 6.1% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,012 A→T 9.8% intergenic (+123/+22) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,016 G→C 9.7% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 9.7% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,512,350:1 +G 6.3% coding (65/957 nt) fecD ← ferric citrate ABC transporter permease
RA 4,520,500 Δ1 bp 12.0% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 11.3% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,532,534 G→C 5.9% A217G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,532,537 G→C 5.9% A216G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,537,639 T→G 7.1% intergenic (‑45/+20) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,640 T→G 7.2% intergenic (‑46/+19) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,643 C→A 7.1% intergenic (‑49/+16) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,537,644 C→A 6.7% intergenic (‑50/+15) nanS ← / ← nanM 9‑O‑acetyl N‑acetylneuraminic acid esterase/N‑acetylneuraminic acid mutarotase
RA 4,551,422 T→A 5.7% intergenic (‑126/‑214) gntP ← / → uxuA fructuronate transporter/mannonate hydrolase
RA 4,592,199 C→T 5.2% A181A (GCC→GCT tsr → methyl‑accepting chemotaxis protein I, serine sensor receptor
RA 4,592,201 T→A 5.5% V182D (GTC→GAC)  tsr → methyl‑accepting chemotaxis protein I, serine sensor receptor
RA 4,592,203 A→G 5.5% S183G (AGC→GGC)  tsr → methyl‑accepting chemotaxis protein I, serine sensor receptor
RA 4,604,753 T→A 5.4% S198R (AGT→AGA bglJ → bgl operon transcriptional activator
RA 4,604,754 T→A 5.4% S199T (TCT→ACT)  bglJ → bgl operon transcriptional activator

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423745–3424234 3424550–3424238 5–806 56 [54] [55] 58 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 224891 =NA (NA)4 (0.030) 3/252 NT NA noncoding (1121/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
?NC_000913 224923 = NA (NA)noncoding (1153/1542 nt) rrsH 16S ribosomal RNA of rrnH operon
* ? NC_000913 274038 =NA (NA)4 (0.030) 4/248 NT NA noncoding (1112/1195 nt) IS5 repeat region
?NC_000913 274083 = NA (NA)noncoding (1067/1195 nt) IS5 repeat region
* ? NC_000913 274620 =NA (NA)3 (0.030) 3/242 NT NA noncoding (530/1195 nt) IS5 repeat region
?NC_000913 274663 = NA (NA)noncoding (487/1195 nt) IS5 repeat region
* ? NC_000913 474269 =NA (NA)4 (0.030) 4/248 NT NA intergenic (+17/+32) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
?NC_000913 474296 = NA (NA)intergenic (+44/+5) amtB/tesB ammonium transporter/acyl‑CoA thioesterase 2
* ? NC_000913 = 858662105 (0.870)6 (0.050) 5/244 NT 5.9% coding (400/1266 nt) ybiU DUF1479 family protein
?NC_000913 = 858674 93 (0.830)coding (388/1266 nt) ybiU DUF1479 family protein
* ? NC_000913 1207790 =50 (0.420)62 (0.590) 47/228 NT 55.1% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 57 (0.540)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780550 (0.420)53 (0.500) 45/228 NT 51.2% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 57 (0.540)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 12994980 (0.000)129 (1.110) 90/252 NT 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
* ? NC_000913 = 139255245 (0.370)84 (0.700) 64/260 NT 65.1% coding (562/900 nt) pgrR murein peptide degradation regulator
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region
* ? NC_000913 1754899 =103 (0.860)5 (0.040) 5/242 NT 5.2% intergenic (‑422/+33) ydhY/ydhZ putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein
?NC_000913 1754928 = 88 (0.790)intergenic (‑451/+4) ydhY/ydhZ putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein
* ? NC_000913 2604981 =123 (1.020)6 (0.050) 7/242 NT 5.0% coding (171/1440 nt) hyfD hydrogenase 4, membrane subunit
?NC_000913 2605003 = 112 (1.000)coding (193/1440 nt) hyfD hydrogenase 4, membrane subunit
* ? NC_000913 2700550 =112 (0.930)5 (0.050) 5/222 NT 5.9% noncoding (31/77 nt) ohsC sRNA antisense regulator of shoB toxin
?NC_000913 2700601 = 65 (0.630)intergenic (+5/+17) ohsC/acpS sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1
* ? NC_000913 3091089 =79 (0.660)5 (0.040) 5/242 NT 6.0% intergenic (+35/‑45) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
?NC_000913 3091113 = 82 (0.730)intergenic (+59/‑21) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
* ? NC_000913 = 309109787 (0.720)9 (0.080) 7/242 NT 9.9% intergenic (+43/‑37) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
?NC_000913 = 3091103 82 (0.730)intergenic (+49/‑31) endA/rsmE DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase, SAM‑dependent
* ? NC_000913 3423376 =110 (0.920)17 (0.140) 9/256 NT 13.3% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213162 113 (0.960)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 3721045 =145 (1.210)329 (2.760) 148/258 NT 70.5% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 132 (1.110)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 3948426 =144 (1.200)9 (0.080) 8/242 NT 6.4% intergenic (+2/+23) yifE/yifB UPF0438 family protein/magnesium chelatase family protein and putative transcriptional regulator
?NC_000913 3948449 = 131 (1.170)coding (1521/1521 nt) yifB magnesium chelatase family protein and putative transcriptional regulator
* ? NC_000913 = 416834163 (0.520)7 (0.060) 6/240 NT 11.4% intergenic (+141/‑31) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
?NC_000913 = 4168363 51 (0.460)intergenic (+163/‑9) rrsB/gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
* ? NC_000913 4614608 =77 (0.640)8 (0.070) 7/246 NT 9.9% noncoding (352/388 nt) REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences
?NC_000913 4614641 = 72 (0.630)noncoding (385/388 nt) REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences