mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | TrimmedAssembly_T66_contig_1 | 88,020 | G→A | A159A (GCC→GCT) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 ← | Transposase |
| RA | TrimmedAssembly_T66_contig_1 | 88,572 | T→C | K89E (AAA→GAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| RA | TrimmedAssembly_T66_contig_1 | 88,584 | G→A | Q85* (CAA→TAA) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| RA | TrimmedAssembly_T66_contig_1 | 88,588 | G→A | N83N (AAC→AAT) | rasttk_feature_annotation_tool=elepa@bvbrc ← | hypothetical protein |
| RA | TrimmedAssembly_T66_contig_9 | 36 | T→C | intergenic (–/+223) | – / ← rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| RA | TrimmedAssembly_T66_contig_9 | 44 | (T)10→9 | intergenic (–/+215) | – / ← rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | TrimmedAssembly_T66_contig_3 | 1 | 1 | 1 | NA [0] | [0] 265 | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | CRISPR‑associated protein Cas1 |
| * | * | ÷ | TrimmedAssembly_T66_contig_39 | 1 | 87–2 | 2–87 | NA [0] | [176] 183 | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aggregation promoting factor |
| * | * | ÷ | TrimmedAssembly_T66_contig_5 | 1 | 24 | 24 | NA [0] | [0] 145 | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| * | * | ÷ | TrimmedAssembly_T66_contig_7 | 138613 | 138687 | 75 | 91 [82] | [0] NA | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Thr‑TGT/– |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | TrimmedAssembly_T66_contig_1 | 1 = | 0 (0.000) | 169 (0.620) | 58/262 | 0.2 | 100% | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 129 (0.860) | 42/262 | 1.0 | 66.1% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_1 | = 655835 | 0 (0.000) | intergenic (‑78/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 192 (1.020) | 60/262 | 0.1 | 74.4% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_14 | 1 = | 0 (0.000) | intergenic (–/+1) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 209 (1.240) | 67/262 | 0.0 | 76.0% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_16 | 1 = | 0 (0.000) | intergenic (–/‑89) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/PTS system, beta‑glucoside‑specific IIB component / PTS system, beta‑glucoside‑specific IIC component / PTS system, beta‑glucoside‑specific IIA component | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 241 (1.300) | 69/262 | 0.0 | 78.5% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_24 | = 19315 | 0 (0.000) | intergenic (+87/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 255 (1.130) | 72/262 | 0.0 | 65.9% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_39 | 1 = | NA (NA) | intergenic (–/+397) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aggregation promoting factor | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88613 | 132 (0.880) | 168 (0.950) | 64/262 | 0.0 | 71.8% | coding (224/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_40 | 1 = | 0 (0.000) | intergenic (–/+211) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_1 | = 88614 | 132 (0.880) | 258 (1.280) | 68/260 | 0.0 | 79.8% | coding (223/300 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 2 = | 0 (0.000) | coding (2/474 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | CRISPR‑associated protein Cas1 | |||||
| * | ? | TrimmedAssembly_T66_contig_10 | = 98898 | 0 (0.000) | 84 (0.360) | 32/262 | 2.6 | 55.1% | intergenic (+59/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_2 | = 81 | 137 (0.470) | coding (80/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_11 | = 96142 | 0 (0.000) | 115 (0.730) | 34/206 | 1.3 | 74.0% | intergenic (+314/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_9 | = 72 | 81 (0.460) | intergenic (–/+187) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_12 | 1 = | 0 (0.000) | 97 (0.310) +61 bp |
34/140 | 0.1 | 100% | intergenic (–/‑8) | –/rasttk_feature_creation_tool=tRNAscan‑SE | –/tRNA‑Asn‑GTT |
| ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA | |||||
| * | ? | TrimmedAssembly_T66_contig_12 | = 94931 | 0 (0.000) | 237 (0.840) | 57/262 | 0.3 | 100% | intergenic (+79/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | = 1096 | 0 (0.000) | intergenic (+10/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_13 | 1 = | 0 (0.000) | 95 (0.480) | 44/256 | 0.9 | 69.8% | intergenic (–/‑320) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_17 | 66634 = | 82 (0.520) | intergenic (+348/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_13 | = 94334 | 0 (0.000) | 211 (0.910) | 64/260 | 0.4 | 73.0% | intergenic (+21/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Ala‑CGC/– |
| ? | TrimmedAssembly_T66_contig_9 | = 132 | 156 (0.700) | intergenic (–/+127) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_14 | = 91033 | 0 (0.000) | 225 (0.730) | 78/262 | 0.1 | 100% | intergenic (+263/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_35 | 1 = | 0 (0.000) | intergenic (–/‑99) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_15 | 1 = | 0 (0.000) | 167 (0.350) +60 bp |
44/142 | 0.0 | 100% | intergenic (–/‑70) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Transcriptional regulator, RpiR family |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_15 | = 90630 | 0 (0.000) | 128 (0.850) +28 bp |
37/206 | 0.7 | 80.9% | intergenic (+107/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_17 | 66638 = | 77 (0.480) | intergenic (+352/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 1 = | 0 (0.000) | 58 (0.500) +52 bp |
23/158 | 1.3 | 69.5% | intergenic (–/+7) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Aspartokinase (EC 2.7.2.4) |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 85 (0.380) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 66610 = | 126 (0.780) | 98 (0.650) | 38/216 | 0.8 | 65.4% | intergenic (+324/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_5 | 25 = | 0 (0.000) | intergenic (–/+415) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | 66638 = | 77 (0.480) | 95 (0.750) +28 bp |
36/206 | 0.8 | 75.9% | intergenic (+352/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_20 | 1 = | 0 (0.000) | intergenic (–/+632) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Lipoteichoic acid synthase LtaS Type IIa | |||||
| * | ? | TrimmedAssembly_T66_contig_17 | = 66737 | 4 (0.020) | 886 (1.620) +A |
100/260 | 0.0 | 99.8% | intergenic (+451/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_32 | 1 = | 0 (0.000) | intergenic (–/‑42) | –/rasttk_feature_creation_tool=RNA_reps_SSU_rRNA | –/SSU rRNA ## 16S rRNA, small subunit ribosomal RNA | |||||
| * | ? | TrimmedAssembly_T66_contig_18 | 1 = | 0 (0.000) | 223 (0.730) | 63/262 | 0.2 | 100% | intergenic (–/+69) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | = 1203 | 0 (0.000) | intergenic (+58/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_18 | = 53854 | 0 (0.000) | 176 (0.730) | 65/262 | 0.2 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_37 | = 853 | 0 (0.000) | intergenic (‑310/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_19 | 1 = | 0 (0.000) | 279 (0.890) | 72/262 | 0.2 | 100% | intergenic (–/+149) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_35 | = 1096 | 0 (0.000) | intergenic (+10/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_19 | = 46603 | 0 (0.000) | 117 (0.640) +22 bp |
31/218 | 2.5 | 70.7% | intergenic (‑53/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_4 | 245808 = | 117 (0.570) | intergenic (‑7/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | 2 = | 1 (0.000) | 449 (0.920) +36 bp |
79/190 | 0.0 | 99.9% | coding (1/180 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family | |||||
| * | ? | TrimmedAssembly_T66_contig_2 | = 291973 | 0 (0.000) | 182 (0.370) +60 bp |
37/142 | 0.5 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | 16208 = | 70 (0.430) | 66 (0.490) | 28/216 | 2.2 | 48.4% | intergenic (‑66/‑80) | rasttk_feature_annotation_tool=elepa@bvbrc/rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_20 | 16359 = | 83 (0.620) | coding (72/117 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | = 16230 | 71 (0.440) | 49 (0.370) | 28/216 | 2.2 | 40.9% | intergenic (‑88/‑58) | rasttk_feature_annotation_tool=elepa@bvbrc/rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_20 | = 16335 | 83 (0.620) | coding (48/117 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | 39090 = | NA (NA) | 89 (0.520) | 26/262 | 2.1 | 100% | intergenic (+42/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | L‑lactate dehydrogenase (EC 1.1.1.27)/– |
| ? | TrimmedAssembly_T66_contig_33 | 1 = | 0 (0.000) | intergenic (–/‑193) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_20 | = 39141 | 0 (0.000) | 81 (0.700) | 30/158 | 0.6 | 66.1% | intergenic (+93/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | L‑lactate dehydrogenase (EC 1.1.1.27)/– |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 83 (0.620) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_21 | = 29409 | 0 (0.000) | 117 (0.500) | 44/262 | 1.0 | 100% | intergenic (‑1/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_37 | 1 = | 0 (0.000) | intergenic (–/+9) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_22 | 1 = | 0 (0.000) | 295 (0.680) | 76/262 | 0.0 | 100% | coding (1/168 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_24 | 1 = | 0 (0.000) | 258 (0.800) | 80/262 | 0.0 | 100% | intergenic (–/‑221) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Competence‑stimulating peptide ABC transporter ATP‑binding protein ComA |
| ? | TrimmedAssembly_T66_contig_34 | 1 = | 0 (0.000) | intergenic (–/‑119) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_25 | 1 = | 0 (0.000) | 367 (0.840) | 77/262 | 0.0 | 100% | intergenic (–/‑494) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_25 | = 5544 | 0 (0.000) | 219 (0.440) +60 bp |
43/142 | 0.1 | 100% | intergenic (+242/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_26 | = 3462 | 0 (0.000) | 246 (1.130) | 53/262 | 0.7 | 100% | coding (1/702 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_29 | 1 = | NA (NA) | coding (228/228 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_27 | 1 = | 0 (0.000) | 200 (0.620) | 66/262 | 0.2 | 100% | intergenic (–/‑57) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | = 1203 | 0 (0.000) | intergenic (+58/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Mobile element protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_27 | = 3273 | 0 (0.000) | 260 (0.650) | 75/262 | 0.0 | 100% | intergenic (‑110/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Adenine specific DNA methylase Mod/– |
| ? | TrimmedAssembly_T66_contig_41 | 1 = | 0 (0.000) | intergenic (–/‑2) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_28 | 1 = | 0 (0.000) | 294 (0.480) | 79/262 | 0.0 | 100% | intergenic (–/+125) | –/rasttk_feature_creation_tool=RNA_reps_LSU_rRNA | –/LSU rRNA ## 23S rRNA, large subunit ribosomal RNA |
| ? | TrimmedAssembly_T66_contig_4 | = 245870 | 0 (0.000) | intergenic (‑69/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_28 | = 3183 | 0 (0.000) | 235 (0.350) +41 bp |
58/180 | 1.7 | 100% | intergenic (‑135/–) | rasttk_feature_creation_tool=RNA_reps_LSU_rRNA/– | LSU rRNA ## 23S rRNA, large subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | 176059 = | 195 (0.760) | 278 (1.180) | 74/242 | 0.1 | 58.0% | coding (556/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | = 178058 | 223 (0.940) | coding (242/633 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Aggregation promoting factor | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | = 176241 | 261 (1.020) | 319 (1.350) +CAGCAGAACT |
94/242 | 0.0 | 58.6% | coding (374/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_3 | 176327 = | 228 (0.890) | coding (288/804 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | 177930 = | 269 (1.050) | 279 (1.000) | 82/262 | 0.1 | 67.5% | coding (370/633 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Aggregation promoting factor |
| ? | TrimmedAssembly_T66_contig_39 | = 663 | 0 (0.000) | intergenic (‑2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Aggregation promoting factor/– | |||||
| * | ? | TrimmedAssembly_T66_contig_3 | = 262583 | 0 (0.000) | 141 (0.290) +60 bp |
39/142 | 0.2 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_31 | 1 = | 0 (0.000) | 184 (0.620) | 59/262 | 0.1 | 100% | intergenic (–/+71) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_34 | 1 = | 0 (0.000) | intergenic (–/‑119) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_32 | = 1640 | 0 (0.000) | 226 (0.670) +50 bp |
52/162 | 0.0 | 80.8% | intergenic (+24/–) | rasttk_feature_creation_tool=RNA_reps_SSU_rRNA/– | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/– |
| ? | TrimmedAssembly_T66_contig_7 | = 137493 | 175 (1.130) | noncoding (69/71 nt) | rasttk_feature_creation_tool=tRNAscan‑SE | tRNA‑Gly‑TCC | |||||
| * | ? | TrimmedAssembly_T66_contig_33 | 1 = | 0 (0.000) | 71 (0.590) +52 bp |
25/158 | 0.6 | 73.6% | intergenic (–/‑193) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein |
| ? | TrimmedAssembly_T66_contig_9 | = 79 | 85 (0.380) | intergenic (–/+180) | –/rasttk_feature_annotation_tool=elepa@bvbrc | –/hypothetical protein | |||||
| * | ? | TrimmedAssembly_T66_contig_33 | = 1499 | 0 (0.000) | 93 (0.200) +60 bp |
32/142 | 0.1 | 100% | coding (585/585 nt) | rasttk_feature_annotation_tool=elepa@bvbrc | hypothetical protein |
| ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– | |||||
| * | ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | 106 (0.230) +60 bp |
36/142 | 0.1 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– |
| ? | TrimmedAssembly_T66_contig_7 | 1 = | 0 (0.000) | intergenic (–/+104) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/SAM‑dependent methyltransferase | |||||
| * | ? | TrimmedAssembly_T66_contig_36 | = 864 | 0 (0.000) | 130 (0.270) +60 bp |
29/142 | 0.8 | 100% | intergenic (+2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Transposase/– |
| ? | TrimmedAssembly_T66_contig_9 | = 133707 | 0 (0.000) | intergenic (‑1/–) | rasttk_feature_annotation_tool=elepa@bvbrc/– | hypothetical protein/– | |||||
| * | ? | TrimmedAssembly_T66_contig_37 | 1 = | 0 (0.000) | 197 (0.840) | 57/262 | 0.3 | 100% | intergenic (–/+9) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Mobile element protein |
| ? | TrimmedAssembly_T66_contig_8 | = 137664 | 0 (0.000) | intergenic (‑2/–) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2/– | Histidinol‑phosphate aminotransferase (EC 2.6.1.9)/– | |||||
| * | ? | TrimmedAssembly_T66_contig_4 | 245808 = | 117 (0.570) | 113 (0.690) +22 bp |
33/218 | 1.9 | 69.9% | intergenic (‑7/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Asn‑GTT/– |
| ? | TrimmedAssembly_T66_contig_6 | = 156776 | 0 (0.000) | intergenic (‑82/–) | rasttk_feature_creation_tool=tRNAscan‑SE/– | tRNA‑Thr‑GGT/– | |||||
| * | ? | TrimmedAssembly_T66_contig_40 | = 631 | 0 (0.000) | 196 (0.500) | 59/262 | 0.1 | 100% | coding (1/420 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein |
| ? | TrimmedAssembly_T66_contig_41 | = 437 | 0 (0.000) | coding (435/435 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Mobile element protein | |||||
| * | ? | TrimmedAssembly_T66_contig_42 | 1 = | 0 (0.000) | 80 (0.230) +57 bp |
31/148 | 0.5 | 100% | coding (318/318 nt) | rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | Transposase, IS4 family |
| ? | TrimmedAssembly_T66_contig_6 | 1 = | 0 (0.000) | intergenic (–/+72) | –/rasttk_feature_annotation_tool=annotate_proteins_km er_v2 | –/Pyruvate oxidase (EC 1.2.3.3) | |||||