mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 10.9% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 10.9% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 11,684 | G→C | 5.5% | P35A (CCG→GCG) | yaaI ← | UPF0412 family protein |
| RA | 15,318 | G→A | 5.8% | intergenic (+20/‑127) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 15,319 | T→C | 5.9% | intergenic (+21/‑126) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 53,279 | C→T | 5.8% | R46R (CGG→CGA) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,376 | G→A | 10.8% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 9.8% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 75,708 | A→G | 6.6% | L531P (CTG→CCG) | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 75,710 | G→C | 6.8% | G530G (GGC→GGG) ‡ | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 75,712 | C→T | 6.9% | G530S (GGC→AGC) ‡ | sgrR ← | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| RA | 83,587 | A→C | 50.0% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,881 | A→G | 9.2% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 9.0% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 8.8% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 100,158 | C→T | 7.4% | P172L (CCG→CTG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 100,161 | A→G | 7.9% | Q173R (CAG→CGG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 111,013 | G→A | 14.3% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 13.9% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 13.2% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 14.0% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 137,018 | G→C | 5.3% | intergenic (‑101/‑65) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 137,020 | A→T | 5.1% | intergenic (‑103/‑63) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 137,022 | G→C | 5.2% | intergenic (‑105/‑61) | yacC ← / → cueO | PulS_OutS family protein/multicopper oxidase (laccase) |
| RA | 164,620 | C→T | 5.2% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 5.2% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 167,291 | G→A | 6.4% | intergenic (+27/‑193) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,293 | G→C | 6.3% | intergenic (+29/‑191) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,295 | T→C | 6.9% | intergenic (+31/‑189) | mrcB → / → fhuA | fused glycosyl transferase and transpeptidase/ferrichrome outer membrane transporter |
| RA | 167,919 | G→T | 6.0% | G146C (GGC→TGC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 169,748 | T→A | 10.5% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 10.5% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 185,117 | A→G | 8.9% | intergenic (‑48/+6) | yaeI ← / ← dapD | phosphodiesterase with model substrate bis‑pNPP/2,3,4,5‑tetrahydropyridine‑2‑carboxylate N‑succinyltransferase |
| RA | 192,573:1 | +G | 7.7% | coding (719/726 nt) | pyrH → | uridylate kinase |
| RA | 192,579 | A→T | 7.8% | *242L (TAA→TTA) | pyrH → | uridylate kinase |
| RA | 201,041 | T→C | 6.3% | V24A (GTC→GCC) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 219,050 | T→C | 9.1% | Q182R (CAG→CGG) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 219,053 | G→A | 9.4% | P181L (CCG→CTG) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 219,055 | A→T | 9.1% | Y180* (TAT→TAA) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 228,963 | T→A | 10.0% | noncoding (36/77 nt) | aspU → | tRNA‑Asp |
| RA | 228,966 | C→G | 9.8% | noncoding (39/77 nt) | aspU → | tRNA‑Asp |
| RA | 231,959 | G→T | 8.2% | G12C (GGC→TGC) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 231,964 | T→A | 8.0% | A13A (GCT→GCA) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 254,223 | A→T | 5.6% | intergenic (+21/+36) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,228 | A→T | 8.3% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 8.6% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 8.2% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 263,358 | C→T | 5.0% | L104L (TTG→TTA) | ykfI ← | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| RA | 285,882 | T→G | 7.8% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 8.4% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 299,377 | A→T | 5.3% | Y520N (TAC→AAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 299,378 | A→T | 5.3% | V519V (GTT→GTA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 317,566 | G→A | 7.1% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 6.8% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 336,866 | G→C | 7.0% | G30A (GGC→GCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 357,691 | G→A | 7.1% | intergenic (+237/+100) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 357,692 | C→A | 7.3% | intergenic (+238/+99) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 357,698 | G→T | 7.4% | intergenic (+244/+93) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 357,699 | A→C | 7.4% | intergenic (+245/+92) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 431,107 | A→T | 12.0% | intergenic (+155/+22) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,109 | A→T | 11.5% | intergenic (+157/+20) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,111 | A→T | 11.5% | intergenic (+159/+18) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 435,396 | T→A | 5.6% | I87N (ATT→AAT) | nusB → | transcription antitermination protein |
| RA | 440,662 | C→A | 6.2% | S147I (AGC→ATC) ‡ | ispA ← | geranyltranstransferase |
| RA | 440,663 | T→G | 5.3% | S147R (AGC→CGC) ‡ | ispA ← | geranyltranstransferase |
| RA | 448,461 | G→T | 7.1% | P67Q (CCG→CAG) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 448,464 | A→C | 6.2% | L66R (CTG→CGG) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 464,354 | C→A | 9.6% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 9.2% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 9.0% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 475,971 | C→G | 12.5% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 12.5% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 478,750 | C→T | 6.6% | intergenic (‑133/+31) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,752 | G→A | 6.7% | intergenic (‑135/+29) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,757 | T→C | 6.4% | intergenic (‑140/+24) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 478,759 | A→G | 6.4% | intergenic (‑142/+22) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 481,228 | C→A | 25.0% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 543,091 | G→C | 13.7% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 13.7% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 551,368 | T→G | 5.1% | intergenic (+36/+159) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,370 | G→C | 5.1% | intergenic (+38/+157) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,372 | C→A | 5.2% | intergenic (+40/+155) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 558,762 | C→A | 6.5% | intergenic (+8/‑212) | sfmA → / → sfmC | FimA homolog, function unknown/putative periplasmic pilus chaperone |
| RA | 558,767 | T→G | 6.5% | intergenic (+13/‑207) | sfmA → / → sfmC | FimA homolog, function unknown/putative periplasmic pilus chaperone |
| RA | 569,161 | A→C | 7.9% | D87A (GAC→GCC) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 585,653 | G→A | 5.3% | intergenic (‑20/‑404) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 585,656 | T→A | 5.5% | intergenic (‑23/‑401) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 585,657 | T→A | 5.5% | intergenic (‑24/‑400) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 585,660 | T→C | 5.5% | intergenic (‑27/‑397) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII; outer membrane protein 3b/tRNA‑OTHER |
| RA | 594,946 | C→A | 7.6% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 7.2% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 7.4% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 603,391 | C→G | 13.9% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 12.2% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 11.8% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 619,410 | T→C | 6.8% | T264A (ACG→GCG) | fepC ← | ferrienterobactin ABC transporter ATPase |
| RA | 650,529 | G→A | 7.9% | R85R (CGC→CGT) | citD ← | citrate lyase, acyl carrier (gamma) subunit |
| RA | 650,532 | T→C | 7.9% | A84A (GCA→GCG) | citD ← | citrate lyase, acyl carrier (gamma) subunit |
| RA | 657,531 | T→G | 9.9% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 9.8% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 9.9% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 665,094 | G→C | 10.0% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 672,110 | G→A | 10.2% | T26I (ACC→ATC) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,113 | T→C | 9.9% | D25G (GAT→GGT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 721,004 | T→A | 10.5% | intergenic (+164/+52) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,006 | T→A | 10.9% | intergenic (+166/+50) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,009 | T→A | 11.1% | intergenic (+169/+47) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 721,011 | T→A | 11.1% | intergenic (+171/+45) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 725,276 | G→A | 6.9% | Y587Y (TAC→TAT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,279 | T→C | 7.0% | K586K (AAA→AAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 747,895 | C→G | 5.4% | intergenic (‑126/+26) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,897 | G→C | 5.5% | intergenic (‑128/+24) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,900 | G→C | 5.5% | intergenic (‑131/+21) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,902 | C→G | 5.6% | intergenic (‑133/+19) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 781,668 | C→T | 22.6% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 22.6% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 22.6% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 784,012 | T→A | 5.5% | Q271L (CAG→CTG) | zitB ← | zinc efflux system |
| RA | 805,312 | G→T | 5.5% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 5.7% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 813,570:1 | +T | 6.5% | coding (45/2022 nt) | uvrB → | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| RA | 813,575 | Δ1 bp | 6.3% | coding (50/2022 nt) | uvrB → | exision nuclease of nucleotide excision repair, DNA damage recognition component |
| RA | 847,213 | A→T | 10.0% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 9.6% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 9.6% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 848,350 | C→T | 8.8% | intergenic (‑346/+58) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 848,356 | T→A | 9.4% | intergenic (‑352/+52) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 848,362 | A→G | 9.3% | intergenic (‑358/+46) | glnH ← / ← dps | glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protein |
| RA | 850,993 | T→C | 7.8% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 7.8% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 7.8% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 7.9% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 857,576 | T→C | 13.1% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 13.1% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 12.8% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 876,933 | T→A | 6.6% | Q368L (CAG→CTG) | rimO ← | ribosomal protein S12 methylthiotransferase |
| RA | 887,392 | T→A | 5.4% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 887,393 | T→A | 5.4% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 922,314:1 | +C | 9.5% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 924,183 | T→C | 5.5% | I307T (ATC→ACC) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 940,751 | T→C | 12.8% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 12.8% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 962,373 | A→T | 52.9% | I127F (ATT→TTT) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 1,015,912 | T→A | 22.5% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 10.6% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 10.6% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,041,937 | T→G | 11.3% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 11.1% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,064,160 | T→C | 13.6% | L42P (CTG→CCG) ‡ | yccE → | uncharacterized protein |
| RA | 1,064,161 | G→A | 12.2% | L42L (CTG→CTA) ‡ | yccE → | uncharacterized protein |
| RA | 1,069,910 | G→C | 6.8% | L149V (CTG→GTG) | rutF ← | flavin:NADH reductase |
| RA | 1,069,911 | C→A | 6.5% | G148G (GGG→GGT) | rutF ← | flavin:NADH reductase |
| RA | 1,069,914 | G→C | 6.7% | Y147* (TAC→TAG) | rutF ← | flavin:NADH reductase |
| RA | 1,069,917 | G→C | 7.0% | P146P (CCC→CCG) | rutF ← | flavin:NADH reductase |
| RA | 1,075,515 | G→T | 5.4% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 5.1% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,100,789 | G→T | 6.7% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 6.7% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 6.5% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,105,384 | G→T | 6.9% | intergenic (+91/‑30) | csgC → / → ymdA | curli assembly protein/uncharacterized protein |
| RA | 1,113,544 | G→A | 15.9% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 15.9% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 15.8% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,130,178 | G→A | 6.5% | intergenic (‑50/+26) | flgM ← / ← flgA | anti‑sigma factor for FliA (sigma 28)/assembly protein for flagellar basal‑body periplasmic P ring |
| RA | 1,143,746 | G→T | 5.2% | H208N (CAT→AAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,143,747 | A→C | 5.3% | I207M (ATT→ATG) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,159,335 | G→T | 15.6% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 15.6% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,174,077 | G→A | 8.5% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 8.6% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,202,961:1 | +C | 5.1% | intergenic (‑28/‑63) | cohE ← / → croE | e14 prophage; repressor protein phage e14/e14 prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,248,064 | T→A | 8.6% | K351* (AAA→TAA) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
| RA | 1,253,830 | C→G | 12.2% | S708T (AGT→ACT) | ycgV ← | putative adhesin |
| RA | 1,256,650 | A→G | 6.6% | intergenic (‑698/+71) | ycgV ← / ← ychF | putative adhesin/catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,257,783 | C→T | 5.7% | L10L (TTG→TTA) | ychF ← | catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,285,261 | Δ1 bp | 6.1% | coding (123/711 nt) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,285,265:1 | +A | 6.2% | coding (127/711 nt) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,287,419 | T→A | 5.7% | intergenic (‑91/+119) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| RA | 1,287,420 | G→C | 5.7% | intergenic (‑92/+118) | tyrV ← / ← tyrT | tRNA‑Tyr/tRNA‑Tyr |
| JC JC | 1,293,196 | IS5 (+) +4 bp | 22.4% | intergenic (‑274/‑328) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,297,952 | G→A | 6.1% | S57F (TCC→TTC) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,297,955 | T→C | 5.7% | E56G (GAA→GGA) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,304,474 | T→A | 5.2% | I214N (ATT→AAT) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,479 | C→G | 5.0% | P216A (CCG→GCG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,306,787 | G→A | 11.4% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 12.2% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,308,872 | T→C | 6.0% | S29P (TCG→CCG) | yciY → | uncharacterized protein |
| RA | 1,311,830 | A→G | 25.0% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 26.5% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,314,886 | T→C | 5.2% | S113S (TCA→TCG) | yciE ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,327,213 | C→T | 6.4% | T121I (ACC→ATC) | rluB → | 23S rRNA pseudouridine(2605) synthase |
| RA | 1,327,216 | A→G | 5.5% | D122G (GAT→GGT) | rluB → | 23S rRNA pseudouridine(2605) synthase |
| RA | 1,330,396:1 | +T | 7.6% | intergenic (+15/+21) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,399 | A→T | 7.4% | intergenic (+18/+18) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,402 | Δ1 bp | 7.4% | intergenic (+21/+15) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,344,033 | A→G | 8.7% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 8.7% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 8.5% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,355,188 | C→T | 8.1% | V95M (GTG→ATG) | sapB ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,406,093 | A→G | 7.1% | I39V (ATC→GTC) | smrA → | DNA endonuclease |
| RA | 1,406,098 | C→T | 6.8% | D40D (GAC→GAT) | smrA → | DNA endonuclease |
| RA | 1,426,178 | A→T | 7.3% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,417 | T→C | 6.5% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 6.5% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 6.3% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 6.4% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,449,050 | T→A | 20.4% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,504,884 | T→C | 12.5% | intergenic (+19/+21) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,888 | T→G | 12.7% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,889 | C→A | 12.8% | intergenic (+24/+16) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 13.7% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,537,540 | G→A | 5.7% | A438A (GCC→GCT) | narY ← | nitrate reductase 2 (NRZ), beta subunit |
| RA | 1,537,544 | A→T | 5.7% | V437D (GTC→GAC) | narY ← | nitrate reductase 2 (NRZ), beta subunit |
| RA | 1,537,548 | T→C | 5.7% | S436G (AGC→GGC) | narY ← | nitrate reductase 2 (NRZ), beta subunit |
| RA | 1,543,229 | G→T | 5.8% | L278M (CTG→ATG) | narU ← | nitrate/nitrite transporter |
| RA | 1,543,230 | C→G | 5.8% | M277I (ATG→ATC) ‡ | narU ← | nitrate/nitrite transporter |
| RA | 1,543,231 | A→C | 5.9% | M277R (ATG→AGG) ‡ | narU ← | nitrate/nitrite transporter |
| RA | 1,546,625 | C→A | 8.3% | G182V (GGA→GTA) | yddG ← | aromatic amino acid exporter |
| RA | 1,568,915 | G→A | 5.9% | intergenic (‑92/+39) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,917 | A→T | 5.9% | intergenic (‑94/+37) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,919 | T→C | 5.8% | intergenic (‑96/+35) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,576,827 | C→T | 6.3% | A265T (GCA→ACA) | yddB ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,603,724 | A→C | 6.6% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 6.8% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,608,704 | A→G | 8.5% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 7.4% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,620,224 | C→G | 11.4% | intergenic (+17/+14) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,620,227 | C→G | 11.2% | intergenic (+20/+11) | marB → / ← eamA | periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 11.4% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 11.7% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 11.7% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,703,251 | A→T | 9.8% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 9.8% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,707,225 | T→A | 10.3% | L103I (TTA→ATA) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,707,226 | T→A | 10.3% | L103* (TTA→TAA) ‡ | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,720,240 | A→T | 6.8% | N122I (AAT→ATT) | slyB → | outer membrane lipoprotein |
| RA | 1,738,635 | C→G | 11.9% | R264R (CGC→CGG) | purR → | transcriptional repressor, hypoxanthine‑binding |
| RA | 1,738,637 | T→A | 11.6% | V265D (GTC→GAC) | purR → | transcriptional repressor, hypoxanthine‑binding |
| RA | 1,738,639 | C→G | 12.0% | P266A (CCG→GCG) | purR → | transcriptional repressor, hypoxanthine‑binding |
| RA | 1,747,025 | G→C | 13.8% | intergenic (+20/‑106) | ydhR → / → ydhS | putative monooxygenase/putative oxidoreductase |
| RA | 1,747,027 | T→A | 14.3% | intergenic (+22/‑104) | ydhR → / → ydhS | putative monooxygenase/putative oxidoreductase |
| RA | 1,747,029 | G→C | 14.8% | intergenic (+24/‑102) | ydhR → / → ydhS | putative monooxygenase/putative oxidoreductase |
| RA | 1,764,687 | T→C | 13.6% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 13.6% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 11.4% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 11.5% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 13.0% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,770,203 | T→A | 10.8% | intergenic (+17/‑169) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,204 | C→G | 10.8% | intergenic (+18/‑168) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,205 | T→A | 10.8% | intergenic (+19/‑167) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,775,276 | T→C | 6.1% | D197D (GAT→GAC) | aroD → | 3‑dehydroquinate dehydratase |
| RA | 1,788,897 | T→C | 5.7% | L155L (TTA→CTA) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,799,370 | Δ1 bp | 5.7% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 5.7% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,827,811 | T→G | 5.8% | K150T (AAA→ACA) | astB ← | succinylarginine dihydrolase |
| RA | 1,827,816 | C→A | 6.0% | L148L (CTG→CTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,861,425 | A→C | 11.4% | intergenic (‑93/+277) | ydjL ← / ← yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| RA | 1,861,428 | G→T | 11.0% | intergenic (‑96/+274) | ydjL ← / ← yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| RA | 1,861,434 | C→T | 11.4% | intergenic (‑102/+268) | ydjL ← / ← yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| RA | 1,864,763 | A→T | 44.4% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 28.6% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 10.3% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,880,851 | T→A | 7.4% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 7.4% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,934,220 | G→T | 6.4% | R129S (CGC→AGC) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,934,224 | T→A | 5.3% | L127L (CTA→CTT) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,963,835 | G→A | 5.3% | H406Y (CAC→TAC) | flhA ← | putative flagellar export pore protein |
| RA | 1,973,111 | G→A | 17.7% | Q77* (CAG→TAG) | cheW ← | purine‑binding chemotaxis protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,981,814 | T→A | 5.6% | T192S (ACG→TCG) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,981,815 | T→A | 5.6% | R191R (CGA→CGT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,985,112 | C→G | 16.9% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,992,083 | G→C | 7.4% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 1,994,367 | G→A | 5.8% | R114C (CGT→TGT) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 2,062,354 | T→A | 6.9% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 6.9% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 6.9% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 6.8% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,074,691 | C→G | 9.2% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,080,811 | G→A | 6.7% | A151V (GCG→GTG) | sbmC ← | DNA gyrase inhibitor |
| RA | 2,089,854 | A→T | 7.2% | intergenic (‑141/‑142) | yefM ← / → hisL | antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide |
| RA | 2,090,122 | A→G | 43.7% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 50.0% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 50.0% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 10.9% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 10.8% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 11.1% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,128,444 | T→C | 8.2% | T149A (ACC→GCC) | wcaF ← | putative acyl transferase |
| RA | 2,128,445 | G→A | 8.3% | G148G (GGC→GGT) | wcaF ← | putative acyl transferase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,165,143 | C→T | 5.1% | intergenic (+145/‑46) | baeR → / → yegP | response regulator in two‑component regulatory system with BaeS/UPF0339 family protein |
| RA | 2,171,814 | A→G | 8.0% | intergenic (‑87/+19) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,816 | C→G | 8.0% | intergenic (‑89/+17) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,818 | C→T | 8.0% | intergenic (‑91/+15) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,692 | G→C | 5.3% | pseudogene (587/914 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,187,314 | C→G | 12.3% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| RA | 2,198,755 | C→T | 7.0% | pseudogene (2282/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,229,322 | C→G | 14.6% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 14.6% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,232,804 | A→T | 8.2% | intergenic (+76/‑74) | cdd → / → sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| RA | 2,270,602 | T→C | 9.4% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 9.7% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,282,830 | T→C | 21.4% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 21.4% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 22.2% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 22.3% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,286,311 | C→G | 12.0% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 12.2% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 11.5% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,290,448 | A→G | 9.2% | intergenic (‑268/‑52) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,290,449 | C→G | 9.2% | intergenic (‑269/‑51) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,290,450 | C→T | 9.2% | intergenic (‑270/‑50) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,302,452 | A→C | 6.0% | L101R (CTG→CGG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,302,455 | G→T | 6.0% | P100Q (CCG→CAG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,334,493 | T→G | 6.1% | Y156S (TAC→TCC) | yfaT ← | DUF1175 family protein, putative host defense protein |
| RA | 2,336,763 | A→C | 10.0% | intergenic (‑119/+30) | yfaA ← / ← gyrA | DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,336,766 | G→T | 10.1% | intergenic (‑122/+27) | yfaA ← / ← gyrA | DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,346,308 | G→A | 5.3% | A482T (GCA→ACA) | nrdA → | ribonucleoside‑diphosphate reductase 1, alpha subunit |
| RA | 2,370,202 | T→C | 5.9% | L62P (CTG→CCG) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,370,206 | C→T | 5.8% | R63R (CGC→CGT) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,370,209 | A→G | 5.5% | S64S (TCA→TCG) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,370,211 | A→G | 5.5% | N65S (AAC→AGC) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,370,215 | G→A | 5.5% | A66A (GCG→GCA) | arnD → | undecaprenyl phosphate‑alpha‑L‑ara4FN deformylase |
| RA | 2,375,483 | A→T | 6.6% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 6.6% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,391,414 | C→G | 6.9% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,417 | C→G | 7.1% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,405,933 | C→G | 6.7% | A237P (GCA→CCA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,405,937 | C→G | 7.5% | V235V (GTG→GTC) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,405,941 | C→G | 6.6% | G234A (GGC→GCC) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,405,946 | A→G | 6.3% | G232G (GGT→GGC) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,407,898 | A→C | 6.1% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 6.2% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,415,725 | C→A | 7.3% | L327M (CTG→ATG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,415,726 | T→G | 7.2% | L327R (CTG→CGG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,425,968 | T→G | 6.5% | intergenic (‑52/+38) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,971 | C→A | 6.4% | intergenic (‑55/+35) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,975 | A→G | 7.3% | intergenic (‑59/+31) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,473,413 | C→T | 7.0% | pseudogene (173/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,477,882 | T→G | 7.1% | L12L (CTT→CTG) | dsdX → | D‑serine transporter |
| RA | 2,477,885 | C→A | 7.1% | I13I (ATC→ATA) | dsdX → | D‑serine transporter |
| RA | 2,491,266 | C→G | 5.3% | E229Q (GAA→CAA) | oxc ← | oxalyl CoA decarboxylase, ThDP‑dependent |
| RA | 2,491,268 | T→A | 5.1% | D228V (GAT→GTT) | oxc ← | oxalyl CoA decarboxylase, ThDP‑dependent |
| RA | 2,491,274:1 | +C | 5.1% | coding (677/1695 nt) | oxc ← | oxalyl CoA decarboxylase, ThDP‑dependent |
| RA | 2,522,021 | G→A | 5.3% | R153* (CGA→TGA) | xapR ← | transcriptional activator of xapAB |
| RA | 2,549,601 | T→G | 6.2% | intergenic (+195/+45) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,608 | T→C | 5.7% | intergenic (+202/+38) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,609 | G→A | 5.7% | intergenic (+203/+37) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,560,317 | A→C | 13.5% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 14.0% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 13.0% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 12.7% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,566,490 | C→T | 8.2% | G132D (GGT→GAT) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,493 | G→C | 9.6% | A131G (GCC→GGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,496 | A→G | 8.0% | I130T (ATC→ACC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,589,122 | G→A | 12.3% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 12.2% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,592,989 | A→G | 5.3% | intergenic (+27/+83) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,592,990 | A→C | 5.3% | intergenic (+28/+82) | ypfN → / ← ypfH | putative membrane protein, UPF0370 family/palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,596,873 | Δ1 bp | 8.8% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 8.9% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,620,216 | C→T | 17.4% | intergenic (‑56/+30) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,218 | T→A | 16.5% | intergenic (‑58/+28) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,220 | A→G | 17.2% | intergenic (‑60/+26) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,629,371 | T→A | 5.4% | F28I (TTC→ATC) | yfgG → | uncharacterized protein |
| RA | 2,632,360 | C→G | 5.1% | G59A (GGC→GCC) | guaA ← | GMP synthetase (glutamine aminotransferase) |
| RA | 2,637,433 | C→T | 16.1% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 15.9% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 16.4% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 18.9% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,675,531 | C→T | 5.5% | V77V (GTG→GTA) | yphC ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 2,691,169 | A→T | 10.9% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 10.9% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 11.2% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,707,320 | A→T | 6.3% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 6.3% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,724,095 | C→A | 13.9% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 13.9% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 13.7% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,753,986 | A→T | 8.6% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,761,620 | T→G | 9.7% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 9.5% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,800,515 | C→A | 12.0% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 12.2% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 11.5% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,801,056 | A→T | 11.4% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,810,872 | C→T | 11.8% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 11.8% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 16.4% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 16.4% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,860 | A→G | 10.7% | noncoding (59/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,814,861 | C→T | 10.9% | noncoding (60/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,822,445 | T→A | 6.5% | E65D (GAA→GAT) ‡ | recX ← | regulatory protein for RecA |
| RA | 2,822,446 | T→A | 6.5% | E65V (GAA→GTA) ‡ | recX ← | regulatory protein for RecA |
| RA | 2,822,684 | A→G | 8.5% | intergenic (‑45/+24) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,823,838 | C→A | 6.8% | intergenic (‑69/+11) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,823,839 | T→G | 6.7% | intergenic (‑70/+10) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,838,222 | A→T | 6.9% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,838,231 | A→T | 6.1% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,863,772 | G→A | 5.3% | R60R (CGG→CGA) | ygbL → | putative class II aldolase |
| RA | 2,866,487 | G→C | 6.9% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 6.9% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,902,494 | G→T | 7.0% | G200V (GGA→GTA) ‡ | ygcE → | putative kinase |
| RA | 2,902,495 | A→C | 6.9% | G200G (GGA→GGC) ‡ | ygcE → | putative kinase |
| RA | 2,907,998 | A→T | 15.8% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,962,561 | G→A | 6.5% | N68N (AAC→AAT) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,962,562 | T→C | 6.5% | N68S (AAC→AGC) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,971,146 | T→C | 6.4% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 6.3% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 6.4% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 6.7% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,987,103 | C→T | 13.6% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 13.8% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 13.2% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,020,510 | G→T | 6.4% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 6.6% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 7.0% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,033,624 | A→G | 10.7% | intergenic (+11/+33) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,627 | T→A | 11.8% | intergenic (+14/+30) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,628 | T→A | 11.8% | intergenic (+15/+29) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,631 | C→T | 11.7% | intergenic (+18/+26) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,051,723 | C→G | 6.3% | D199H (GAT→CAT) | ubiI ← | 2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,061,817 | G→C | 8.9% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 8.9% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,079,856 | C→G | 5.7% | A594P (GCT→CCT) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,092,774:1 | +A | 9.3% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,092,779 | Δ1 bp | 9.9% | coding (902/951 nt) | gshB → | glutathione synthetase |
| RA | 3,095,151 | T→C | 7.5% | A18A (GCT→GCC) | yggS → | UPF0001 family protein, PLP‑binding |
| RA | 3,095,164 | G→A | 6.0% | G23S (GGC→AGC) | yggS → | UPF0001 family protein, PLP‑binding |
| RA | 3,111,961 | T→C | 5.1% | pseudogene (130/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| RA | 3,111,962 | G→A | 5.1% | pseudogene (129/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| RA | 3,140,859 | T→G | 7.7% | E143A (GAG→GCG) | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,140,861 | A→T | 7.7% | L142L (CTT→CTA) ‡ | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,140,862 | A→T | 7.7% | L142H (CTT→CAT) ‡ | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,140,864 | C→A | 7.3% | A141A (GCG→GCT) | hybD ← | maturation protease for hydrogenase 2 |
| RA | 3,156,590 | C→A | 10.6% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 10.5% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,169,260 | Δ1 bp | 6.9% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,171,852 | C→T | 22.0% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 20.8% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 20.8% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 16.3% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,180,036 | A→T | 6.3% | Q98L (CAG→CTG) | ygiB → | DUF1190 family protein |
| RA | 3,180,039 | A→T | 6.3% | Q99L (CAG→CTG) | ygiB → | DUF1190 family protein |
| RA | 3,180,497 | Δ1 bp | 10.8% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 13.4% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 13.3% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 7.5% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,238,463 | C→T | 7.1% | intergenic (+166/‑117) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,464 | A→C | 8.1% | intergenic (+167/‑116) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,465 | G→T | 7.2% | intergenic (+168/‑115) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,466 | A→G | 7.2% | intergenic (+169/‑114) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,239,609 | T→G | 15.2% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 15.2% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 15.2% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,258,251 | T→A | 8.5% | intergenic (‑241/+34) | yhaO ← / ← tdcG | putative transporter/L‑serine dehydratase 3, anaerobic |
| RA | 3,258,252 | T→A | 8.5% | intergenic (‑242/+33) | yhaO ← / ← tdcG | putative transporter/L‑serine dehydratase 3, anaerobic |
| RA | 3,259,122 | T→G | 5.6% | E176D (GAA→GAC) ‡ | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,259,124 | C→G | 5.6% | E176Q (GAA→CAA) ‡ | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,259,126 | C→A | 5.5% | G175V (GGT→GTT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,288,032 | C→A | 25.0% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 25.0% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,303,611 | T→A | 9.2% | I55N (ATT→AAT) | yhbW → | putative luciferase‑like monooxygenase |
| RA | 3,309,012 | A→G | 5.5% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,331,979 | T→C | 6.8% | T253A (ACG→GCG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,331,983 | G→C | 6.8% | I251M (ATC→ATG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,331,987 | G→A | 6.0% | A250V (GCG→GTG) | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,332,822 | G→A | 29.6% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 29.4% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 12.3% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 12.5% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 12.5% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,369,803 | A→T | 5.7% | I183N (ATT→AAT) | nanK ← | N‑acetylmannosamine kinase |
| RA | 3,369,807 | C→A | 5.4% | G182C (GGC→TGC) | nanK ← | N‑acetylmannosamine kinase |
| RA | 3,407,293 | T→A | 11.3% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,294 | T→A | 11.3% | intergenic (+28/‑81) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,295 | T→A | 11.3% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,418,628 | G→A | 8.0% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 8.0% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,423,390 | C→T | 23.5% | intergenic (+196/+33) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,396 | T→G | 22.2% | intergenic (+202/+27) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,397 | T→G | 22.2% | intergenic (+203/+26) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,398 | C→A | 22.2% | intergenic (+204/+25) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,399 | C→A | 22.2% | intergenic (+205/+24) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,405 | A→G | 21.0% | intergenic (+211/+18) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 14.0% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 15.5% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,443,592 | A→C | 7.7% | M169R (ATG→AGG) ‡ | secY ← | preprotein translocase membrane subunit |
| RA | 3,443,593 | T→A | 7.6% | M169L (ATG→TTG) ‡ | secY ← | preprotein translocase membrane subunit |
| RA | 3,443,594 | G→T | 8.0% | T168T (ACC→ACA) | secY ← | preprotein translocase membrane subunit |
| RA | 3,471,357 | C→T | 13.0% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 16.1% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 15.5% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 16.5% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,492,430 | C→T | 7.9% | intergenic (‑133/‑138) | ppiA ← / → tsgA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A)/putative transporter |
| RA | 3,521,267 | C→A | 5.1% | L61L (CTG→CTT) | hofO ← | DNA catabolic protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,563,539 | T→C | 6.4% | intergenic (+21/+248) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,587,691 | C→T | 8.3% | T141T (ACG→ACA) | ugpQ ← | glycerophosphodiester phosphodiesterase, cytosolic |
| RA | 3,590,876 | C→T | 6.1% | W12* (TGG→TGA) | ugpA ← | sn‑glycerol‑3‑phosphate ABC transporter permease |
| RA | 3,607,367 | C→G | 5.5% | A306G (GCC→GGC) | zntA → | zinc, cobalt and lead efflux system |
| RA | 3,642,358 | T→A | 15.9% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 15.6% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,656,788 | C→G | 5.1% | intergenic (‑48/‑207) | hdeA ← / → hdeD | stress response protein acid‑resistance protein/acid‑resistance membrane protein |
| RA | 3,657,599 | T→A | 11.8% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 11.4% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 11.9% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,702,835 | G→A | 5.1% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 5.2% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 5.3% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,722,300 | G→T | 7.7% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,722,301 | A→C | 7.5% | intergenic (+196/+27) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,729,405 | C→G | 5.5% | intergenic (‑34/+38) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,408 | C→G | 5.6% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,747,168:1 | +C | 5.2% | coding (85/1497 nt) | lyxK → | L‑xylulose kinase |
| RA | 3,747,173 | Δ1 bp | 5.3% | coding (90/1497 nt) | lyxK → | L‑xylulose kinase |
| RA | 3,756,563 | A→G | 7.0% | intergenic (‑52/+113) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,756,564 | T→A | 6.3% | intergenic (‑53/+112) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,756,565 | C→T | 6.4% | intergenic (‑54/+111) | aldB ← / ← yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| RA | 3,774,207 | C→T | 6.5% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 6.1% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 6.2% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 6.6% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 7.9% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 5.0% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 5.3% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,798,234 | A→T | 7.8% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 7.8% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,814,164 | G→A | 5.2% | G78D (GGT→GAT) | dut → | deoxyuridinetriphosphatase |
| RA | 3,814,167 | T→C | 5.1% | I79T (ATC→ACC) | dut → | deoxyuridinetriphosphatase |
| RA | 3,815,816 | C→G | 9.1% | intergenic (‑48/+18) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,819 | C→G | 9.0% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,817,940 | T→A | 6.6% | F61I (TTC→ATC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,948 | G→T | 8.1% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 7.9% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,957 | T→A | 5.8% | D66E (GAT→GAA) | dinD → | DNA damage‑inducible protein |
| RA | 3,882,515 | A→C | 5.8% | R405R (CGT→CGG) | dnaA ← | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator |
| RA | 3,883,836 | T→A | 5.2% | intergenic (‑107/‑500) | dnaA ← / → rpmH | chromosomal replication initiator protein DnaA, DNA‑binding transcriptional dual regulator/50S ribosomal subunit protein L34 |
| RA | 3,890,952 | G→T | 7.5% | V239V (GTG→GTT) | tnaB → | tryptophan transporter of low affinity |
| RA | 3,900,542 | A→T | 6.3% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 6.2% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,906,826 | T→C | 12.5% | intergenic (‑259/+27) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,828 | A→T | 14.3% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,830 | G→A | 15.0% | intergenic (‑263/+23) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,920,796 | T→C | 6.4% | A31A (GCA→GCG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,953,432 | C→T | 8.3% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 8.3% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 8.3% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,959,515 | T→A | 13.6% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,293:1 | +C | 5.3% | coding (937/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,299 | Δ1 bp | 5.3% | coding (931/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,976,402 | A→T | 6.8% | N42I (AAT→ATT) | wzxE → | O‑antigen translocase |
| RA | 3,976,405 | T→G | 6.6% | F43C (TTC→TGC) | wzxE → | O‑antigen translocase |
| RA | 3,991,334 | T→A | 6.2% | I61N (ATT→AAT) ‡ | cyaA → | adenylate cyclase |
| RA | 3,991,335 | T→A | 6.2% | I61I (ATT→ATA) ‡ | cyaA → | adenylate cyclase |
| JC | 3,992,314 | 92 bp x 2 | 62.1% | duplication | cyaA → | adenylate cyclase |
| RA | 3,993,406 | G→T | 17.7% | E752* (GAG→TAG) | cyaA → | adenylate cyclase |
| RA | 4,002,398 | T→C | 6.8% | intergenic (+22/+21) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,002,400 | T→A | 6.5% | intergenic (+24/+19) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,002,402 | G→A | 6.7% | intergenic (+26/+17) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,017,216:1 | +A | 14.7% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 14.7% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,047,208 | C→T | 10.0% | R81R (CGC→CGT) | polA → | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,047,212 | C→G | 10.0% | P83A (CCA→GCA) | polA → | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,047,215 | A→T | 9.6% | M84L (ATG→TTG) | polA → | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,047,218 | C→G | 10.0% | P85A (CCG→GCG) | polA → | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,047,222 | A→G | 12.3% | D86G (GAC→GGC) | polA → | 5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,056,539 | T→A | 5.4% | intergenic (‑200/+86) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,540 | T→A | 5.3% | intergenic (‑201/+85) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,060,261 | G→T | 11.3% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 11.6% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 12.2% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,070,410 | C→A | 7.9% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,413 | T→G | 7.9% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,082,696 | G→C | 11.8% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,092,780 | C→A | 8.6% | G15V (GGC→GTC) | frvA ← | putative enzyme IIA component of PTS |
| RA | 4,093,463 | A→G | 6.2% | S270S (AGT→AGC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,094,696 | A→C | 7.7% | intergenic (‑424/+27) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,702 | T→G | 10.0% | intergenic (‑430/+21) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,703 | C→A | 9.9% | intergenic (‑431/+20) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,709 | G→T | 11.0% | intergenic (‑437/+14) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,094,710 | C→T | 11.3% | intergenic (‑438/+13) | rhaD ← / ← rhaA | rhamnulose‑1‑phosphate aldolase/L‑rhamnose isomerase |
| RA | 4,116,546 | C→T | 19.8% | G226D (GGT→GAT) | glpK ← | glycerol kinase |
| RA | 4,117,123 | G→T | 84.2% | R34S (CGC→AGC) | glpK ← | glycerol kinase |
| RA | 4,144,732 | G→C | 9.0% | Q246H (CAG→CAC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,144,735 | G→C | 9.0% | A247A (GCG→GCC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,148,049 | C→G | 9.3% | G90A (GGC→GCC) | yijO ← | AraC family putative transcriptional activator |
| RA | 4,177,171 | T→A | 14.3% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 13.1% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| JC | 4,183,116 | (45 bp)1→2 | 20.4% | coding (1872/4029 nt) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,207,591 | C→T | 6.9% | intergenic (‑59/‑556) | purH ← / → rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| RA | 4,223,854 | T→C | 5.8% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,233,560 | C→T | 6.9% | intergenic (‑327/‑198) | lysC ← / → pgi | lysine‑sensitive aspartokinase 3/glucosephosphate isomerase |
| RA | 4,236,156 | T→C | 5.5% | intergenic (+8/‑106) | yjbE → / → yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| RA | 4,261,349 | G→A | 13.0% | intergenic (+43/‑320) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,358 | T→A | 19.6% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 19.6% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,368 | T→C | 10.8% | intergenic (+62/‑301) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 11.4% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 9.8% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,280,465 | G→A | 9.1% | S162S (TCG→TCA) | yjcE → | putative cation/proton antiporter |
| RA | 4,289,094 | T→A | 5.4% | I444N (ATT→AAT) | nrfA → | nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 22.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 9.2% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 9.6% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,312,080 | G→C | 7.8% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 7.8% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 7.8% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,314,233 | A→T | 5.1% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,332,868 | G→T | 9.2% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 6.5% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,336,974 | A→T | 7.3% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,337,523 | A→G | 7.9% | V136A (GTT→GCT) | adiY ← | adi system transcriptional activator |
| RA | 4,347,285 | C→G | 9.3% | M14I (ATG→ATC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,347,288 | C→G | 9.2% | P13P (CCG→CCC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,356,445 | A→T | 21.7% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 21.7% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,366,854 | T→G | 33.3% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 33.3% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,371,931 | G→T | 6.2% | E303* (GAA→TAA) ‡ | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,371,932 | A→C | 5.4% | E303A (GAA→GCA) ‡ | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,390,401 | C→A | 5.2% | intergenic (‑41/+56) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,403 | A→G | 5.2% | intergenic (‑43/+54) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,404 | C→T | 5.4% | intergenic (‑44/+53) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,390,406 | T→G | 5.4% | intergenic (‑46/+51) | psd ← / ← rsgA | phosphatidylserine decarboxylase/ribosome small subunit‑dependent GTPase A |
| RA | 4,395,454 | T→C | 11.7% | C463C (TGT→TGC) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,395,455 | G→A | 11.8% | A464T (GCA→ACA) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,397,543 | T→C | 5.9% | I44I (ATT→ATC) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,397,544 | G→A | 5.9% | D45N (GAT→AAT) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,409,160 | G→A | 12.0% | intergenic (+65/‑115) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,161 | C→A | 11.8% | intergenic (+66/‑114) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,167 | G→T | 12.6% | intergenic (+72/‑108) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,168 | A→C | 12.1% | intergenic (+73/‑107) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,174 | T→G | 14.3% | intergenic (+79/‑101) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,175 | T→C | 14.2% | intergenic (+80/‑100) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,414,234 | G→C | 5.3% | intergenic (+43/‑41) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,240 | A→T | 5.2% | intergenic (+49/‑35) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,241 | C→A | 5.2% | intergenic (+50/‑34) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,242 | T→G | 5.1% | intergenic (+51/‑33) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,243 | A→T | 5.4% | intergenic (+52/‑32) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,414,249 | G→C | 5.3% | intergenic (+58/‑26) | yjfC → / → aidB | ATP‑Grasp family ATPase/DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,432,469 | C→A | 5.1% | Q196H (CAG→CAT) ‡ | ytfF ← | DMT transporter family inner membrane protein |
| RA | 4,432,470 | T→G | 5.1% | Q196P (CAG→CCG) ‡ | ytfF ← | DMT transporter family inner membrane protein |
| RA | 4,439,845 | T→A | 10.0% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,447,964 | T→A | 6.1% | L24* (TTA→TAA) | ytfP → | GGCT‑like protein |
| RA | 4,463,652 | C→G | 6.7% | G353A (GGC→GCC) | treC ← | trehalose‑6‑P hydrolase |
| RA | 4,472,434 | G→A | 10.6% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 10.6% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 14.9% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 15.1% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 16.3% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,514,335 | A→T | 6.3% | intergenic (‑27/+18) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,514,336 | A→T | 6.3% | intergenic (‑28/+17) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,328 | T→G | 6.0% | E450D (GAA→GAC) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,329 | T→A | 5.0% | E450V (GAA→GTA) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,330 | C→A | 5.1% | E450* (GAA→TAA) ‡ | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,972 | A→T | 5.3% | Y236N (TAC→AAC) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,520,500 | Δ1 bp | 16.2% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 15.8% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,523,466 | T→A | 6.9% | N210I (AAT→ATT) | yjhG ← | putative dehydratase |
| RA | 4,532,534 | G→C | 7.0% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 7.0% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,544,603 | C→G | 6.0% | T100T (ACC→ACG) | fimC → | periplasmic chaperone |
| RA | 4,544,607 | C→G | 5.4% | R102G (CGT→GGT) | fimC → | periplasmic chaperone |
| RA | 4,549,932 | T→A | 8.1% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,554,516 | A→G | 7.7% | intergenic (+155/‑60) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,517 | A→C | 7.2% | intergenic (+156/‑59) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,523 | T→G | 10.8% | intergenic (+162/‑53) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,554,524 | C→A | 10.8% | intergenic (+163/‑52) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor |
| RA | 4,604,753 | T→A | 6.4% | S198R (AGT→AGA) | bglJ → | bgl operon transcriptional activator |
| RA | 4,604,754 | T→A | 5.6% | S199T (TCT→ACT) | bglJ → | bgl operon transcriptional activator |
| RA | 4,608,604 | C→G | 8.0% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,608,607 | C→G | 7.9% | I141M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,638,690 | C→T | 7.7% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 7.7% | T172A (ACC→GCC) | creD → | inner membrane protein |
| RA | 4,639,554 | A→T | 20.0% | intergenic (+24/+36) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,556 | A→T | 20.0% | intergenic (+26/+34) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,557 | A→T | 19.5% | intergenic (+27/+33) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423763–3424234 | 3424538–3424238 | 5–776 | 27 [24] | [25] 26 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4044012 | 4044185 | 174 | 26 [24] | [25] 26 | [dsbA] | [dsbA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 27060 | 61 (0.810) | 4 (0.050) | 3/250 | NT | 6.0% | coding (784/951 nt) | ispH | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase, 4Fe‑4S protein |
| ? | NC_000913 | = 27076 | 66 (0.910) | coding (800/951 nt) | ispH | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase, 4Fe‑4S protein | |||||
| * | ? | NC_000913 | 77116 = | 65 (0.860) | 4 (0.050) | 4/252 | NT | 6.2% | coding (184/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA |
| ? | NC_000913 | 77153 = | 58 (0.790) | coding (147/1656 nt) | sgrR | transcriptional DNA‑binding transcriptional activator of sgrS sRNA | |||||
| * | ? | NC_000913 | 93195 = | 47 (0.620) | 4 (0.050) | 4/250 | NT | 7.2% | coding (30/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| ? | NC_000913 | 93229 = | 58 (0.800) | coding (64/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 28 (0.380) | 15/252 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 3 (0.040) | 3/242 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 288413 | 40 (0.530) | 4 (0.060) | 3/242 | NT | 9.2% | coding (750/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 288439 | 42 (0.600) | coding (724/759 nt) | yagI | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | = 368554 | 67 (0.880) | 4 (0.060) | 4/246 | NT | 5.8% | intergenic (‑134/‑57) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| ? | NC_000913 | = 368583 | 67 (0.940) | intergenic (‑163/‑28) | mhpR/mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase | |||||
| * | ? | NC_000913 | = 730507 | NA (NA) | 4 (0.060) | 4/248 | NT | 5.7% | coding (925/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730543 | 69 (0.910) | coding (961/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 1130485 | 80 (1.060) | 5 (0.070) | 4/248 | NT | 6.2% | coding (379/660 nt) | flgA | assembly protein for flagellar basal‑body periplasmic P ring |
| ? | NC_000913 | = 1130504 | 75 (1.040) | coding (360/660 nt) | flgA | assembly protein for flagellar basal‑body periplasmic P ring | |||||
| * | ? | NC_000913 | 1144324 = | 54 (0.710) | 5 (0.070) | 5/244 | NT | 9.3% | coding (44/3186 nt) | rne | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| ? | NC_000913 | 1144348 = | 47 (0.660) | coding (20/3186 nt) | rne | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein | |||||
| * | ? | NC_000913 | 1207790 = | 30 (0.400) | 48 (0.720) | 37/228 | NT | 64.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 26 (0.390) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.380) | 24 (0.360) | 23/228 | NT | 48.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 26 (0.390) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 60 (0.820) | 47/252 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1570641 = | 85 (1.120) | 4 (0.060) +ATAACGTTGTAAA |
4/234 | NT | 6.5% | intergenic (‑152/+4) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913 | 3666120 = | 44 (0.580) | intergenic (‑310/+60) | gadX/gadA | acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 2279469 = | 54 (0.710) | 4 (0.060) | 4/238 | NT | 7.8% | coding (292/1191 nt) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter |
| ? | NC_000913 | 2279514 = | 45 (0.650) | coding (247/1191 nt) | bcr | bicyclomycin/cysteine/sulfonamide efflux transporter | |||||
| * | ? | NC_000913 | 2404932 = | 54 (0.710) | 3 (0.040) | 3/248 | NT | 5.6% | coding (141/444 nt) | nuoA | NADH:ubiquinone oxidoreductase, membrane subunit A |
| ? | NC_000913 | 2404969 = | 50 (0.690) | coding (104/444 nt) | nuoA | NADH:ubiquinone oxidoreductase, membrane subunit A | |||||
| * | ? | NC_000913 | = 2454028 | 68 (0.900) | 5 (0.070) | 5/242 | NT | 7.1% | pseudogene (974/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| ? | NC_000913 | = 2454044 | 68 (0.970) | pseudogene (958/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein | |||||
| * | ? | NC_000913 | = 2543676 | 46 (0.610) | 6 (0.080) | 4/252 | NT | 10.1% | intergenic (‑148/+156) | cysP/ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase |
| ? | NC_000913 | = 2543754 | 62 (0.840) | intergenic (‑226/+78) | cysP/ucpA | thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 53 (0.730) | 17/248 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2897712 = | 64 (0.850) | 4 (0.060) | 4/244 | NT | 6.4% | coding (159/1338 nt) | ygcS | putative MFS sugar transporter; membrane protein |
| ? | NC_000913 | 2897767 = | 57 (0.800) | coding (104/1338 nt) | ygcS | putative MFS sugar transporter; membrane protein | |||||
| * | ? | NC_000913 | 3247994 = | 47 (0.620) | 3 (0.040) | 3/246 | NT | 6.5% | coding (222/663 nt) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| ? | NC_000913 | 3248031 = | 42 (0.590) | coding (259/663 nt) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter | |||||
| * | ? | NC_000913 | 3535566 = | 83 (1.100) | 6 (0.080) | 4/248 | NT | 7.7% | coding (303/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | 3535601 = | 64 (0.890) | coding (268/1353 nt) | envZ | sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | = 3620350 | NA (NA) | 6 (0.080) | 6/248 | NT | 100% | coding (1159/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620425 | 0 (0.000) | coding (1234/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 17 (0.240) | 10/248 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620675 = | NA (NA) | 3 (0.040) | 3/248 | NT | 100% | coding (1484/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620695 = | 0 (0.000) | coding (1504/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3700152 | 68 (0.900) | 5 (0.070) | 5/258 | NT | 7.8% | noncoding (17/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD |
| ? | NC_000913 | = 3700196 | 50 (0.670) | noncoding (61/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD | |||||
| * | ? | NC_000913 | 3721045 = | 65 (0.860) | 198 (2.640) | 127/258 | NT | 75.5% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 64 (0.850) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4534139 | 82 (1.080) | 5 (0.070) | 5/240 | NT | 6.0% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 81 (1.160) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | 4542682 = | 32 (0.420) | 4 (0.060) | 4/242 | NT | 8.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 60 (0.850) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||