mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 5.4% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 5.6% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 13,583 | T→G | 5.4% | V474G (GTT→GGT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 13,586 | C→A | 5.8% | T475N (ACC→AAC) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 53,376 | G→A | 5.5% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 9.7% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 9.2% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 111,013 | G→A | 14.1% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 13.6% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 130,289 | A→G | 5.1% | G324G (GGT→GGC) | yacH ← | DUF3300 family protein |
| RA | 151,519 | A→C | 8.3% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 7.7% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 208,552 | T→A | 5.9% | L1143I (TTA→ATA) | dnaE → | DNA polymerase III alpha subunit |
| RA | 242,344 | C→G | 7.3% | P320P (CCG→CCC) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 256,449 | T→C | 6.0% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 5.9% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 6.0% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 282,513 | T→C | 7.6% | L79P (CTG→CCG) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 282,518 | G→A | 6.8% | G81S (GGC→AGC) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 285,882 | T→G | 7.5% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 7.9% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| JC JC | 346,325 | IS5 (+) +4 bp | 5.1% | coding (10‑13/672 nt) | yahN ← | amino acid exporter for proline, lysine, glutamate, homoserine |
| RA | 365,263 | T→A | 5.1% | K348M (AAG→ATG) ‡ | lacZ ← | beta‑D‑galactosidase |
| RA | 365,264 | T→A | 5.1% | K348* (AAG→TAG) ‡ | lacZ ← | beta‑D‑galactosidase |
| RA | 371,064 | C→G | 7.1% | A263G (GCC→GGC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 371,067 | T→A | 7.0% | I264N (ATT→AAT) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 371,070 | C→G | 7.1% | A265G (GCC→GGC) | mhpB → | 2,3‑dihydroxyphenylpropionate 1,2‑dioxygenase |
| RA | 443,023 | T→C | 5.2% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 448,965 | G→A | 6.7% | H559H (CAC→CAT) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 448,966 | T→C | 5.7% | H559R (CAC→CGC) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 454,853 | T→C | 6.7% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 6.3% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 464,354 | C→A | 5.8% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 5.7% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 5.6% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 475,971 | C→G | 8.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 8.0% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 481,225 | T→G | 8.6% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 8.9% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 493,118 | C→A | 5.3% | P343T (CCG→ACG) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 493,122 | A→T | 5.1% | D344V (GAC→GTC) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 493,126 | T→G | 5.2% | R345R (CGT→CGG) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 524,391 | G→T | 5.3% | P377P (CCG→CCT) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 524,394 | A→C | 5.3% | A378A (GCA→GCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 543,091 | G→C | 8.4% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 8.2% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,207 | A→T | 6.2% | intergenic (+174/+54) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 6.1% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 8.8% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 8.8% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 8.7% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 595,519 | T→A | 6.1% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 6.1% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 622,455 | G→C | 5.3% | W52C (TGG→TGC) | entS → | enterobactin exporter, iron‑regulated |
| RA | 632,070 | T→G | 6.0% | intergenic (+71/‑112) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 632,075 | G→A | 5.2% | intergenic (+76/‑107) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 632,076 | G→C | 5.0% | intergenic (+77/‑106) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 632,077 | T→C | 5.0% | intergenic (+78/‑105) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 632,082 | C→A | 5.3% | intergenic (+83/‑100) | cstA → / → ybdD | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein/DUF466 family protein |
| RA | 657,531 | T→G | 10.9% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 10.9% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 10.9% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 665,094 | G→C | 7.9% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 672,110 | G→A | 5.2% | T26I (ACC→ATC) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,113 | T→C | 5.3% | D25G (GAT→GGT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 681,694 | A→G | 6.6% | intergenic (+31/+29) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,699 | T→A | 6.4% | intergenic (+36/+24) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,700 | T→A | 6.4% | intergenic (+37/+23) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 681,705 | C→T | 7.9% | intergenic (+42/+18) | djlC → / ← hscC | J domain‑containing HscC co‑chaperone; Hsc56/Hsp70 family chaperone Hsc62; RpoD‑binding transcription inhibitor |
| RA | 691,390 | G→C | 5.7% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 699,556 | C→T | 6.4% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 6.4% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 710,170 | C→T | 11.9% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 11.7% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 725,276 | G→A | 6.2% | Y587Y (TAC→TAT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,279 | T→C | 6.0% | K586K (AAA→AAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 756,643 | T→A | 5.5% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 765,135 | T→C | 5.3% | intergenic (+86/+18) | sucD → / ← mngR | succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon |
| RA | 770,679 | G→T | 5.9% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 5.5% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,805 | G→A | 7.2% | intergenic (+194/‑653) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,810 | T→C | 7.4% | intergenic (+199/‑648) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 773,138 | G→A | 8.1% | G33S (GGC→AGC) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 773,145 | T→C | 6.7% | L35P (CTC→CCC) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 781,824 | C→T | 6.7% | intergenic (+172/‑261) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,826 | A→T | 6.5% | intergenic (+174/‑259) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,828 | A→G | 6.6% | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 805,312 | G→T | 6.9% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 6.2% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 847,214 | T→A | 5.1% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 5.1% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 857,576 | T→C | 12.3% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 12.4% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 12.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 892,455 | G→C | 5.1% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 5.1% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 5.0% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 894,952 | T→A | 5.1% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 897,968:1 | +A | 5.1% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 899,656 | T→C | 6.5% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 899,657 | G→A | 6.5% | intergenic (+12/+187) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 915,080 | G→C | 12.4% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 12.4% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 922,314:1 | +C | 5.8% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 926,174 | A→T | 5.3% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 6.2% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 940,751 | T→C | 8.3% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 8.4% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 958,769 | C→G | 9.2% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 9.3% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 8.9% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 987,560 | G→C | 7.7% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 7.8% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,015,912 | T→A | 10.5% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 6.8% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 6.8% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,041,937 | T→G | 8.8% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 8.9% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,100,789 | G→T | 8.2% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 8.0% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 8.2% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,129,394 | G→C | 7.7% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,141,148 | C→T | 6.8% | intergenic (+162/+34) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,150 | G→A | 6.6% | intergenic (+164/+32) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,151 | T→C | 6.6% | intergenic (+165/+31) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,153 | A→G | 6.6% | intergenic (+167/+29) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,147,548 | T→G | 5.7% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,549 | C→A | 5.6% | intergenic (+9/‑72) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,980 | G→T | 7.4% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 7.8% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 7.8% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 7.7% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,153,208 | T→C | 5.1% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,159,335 | G→T | 6.5% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 6.6% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 8.7% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 8.8% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 8.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 6.5% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 6.2% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,194,650 | G→A | 5.2% | P101L (CCG→CTG) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,194,653 | T→C | 5.2% | Q100R (CAG→CGG) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,194,657 | Δ1 bp | 5.2% | coding (295/654 nt) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,211,610 | A→G | 5.3% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 5.5% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 5.6% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,224,239 | A→T | 8.4% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 8.0% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,253,830 | C→G | 8.7% | S708T (AGT→ACT) | ycgV ← | putative adhesin |
| RA | 1,260,901 | C→T | 5.1% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,285,190 | T→A | 5.4% | L18I (TTA→ATA) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,311,830 | A→G | 10.9% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 10.7% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,324,837 | A→C | 6.5% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 6.5% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 7.3% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,335,681 | T→C | 6.5% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 7.1% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,344,033 | A→G | 7.7% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 7.7% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 7.5% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,388,283 | C→T | 7.8% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 7.9% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 8.2% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,426,178 | A→T | 6.4% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,417 | T→C | 5.7% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 6.1% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 5.7% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 6.3% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,449,050 | T→A | 8.2% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,498,892 | A→T | 7.6% | intergenic (+17/‑46) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 7.6% | intergenic (+19/‑44) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 7.6% | intergenic (+21/‑42) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,522,716 | T→A | 7.1% | D117V (GAC→GTC) | yncD ← | putative iron outer membrane transporter |
| RA | 1,535,876 | T→A | 5.2% | intergenic (‑18/+61) | yddE ← / ← narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit |
| RA | 1,557,197 | G→T | 5.0% | P281Q (CCG→CAG) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,629,435 | G→A | 5.4% | intergenic (+17/+18) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,436 | A→T | 5.1% | intergenic (+18/+17) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,437 | T→C | 5.1% | intergenic (+19/+16) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,642,370 | C→G | 8.5% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 8.4% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,660,438 | A→G | 5.5% | S790S (TCA→TCG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,442 | C→G | 5.6% | L792V (CTG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,446 | C→T | 5.4% | A793V (GCG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,666,466 | T→G | 6.0% | Y384* (TAT→TAG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,468 | A→T | 5.8% | Q385L (CAG→CTG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,470 | C→A | 5.6% | L386I (CTA→ATA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 6.2% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 7.0% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 7.0% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,703,251 | A→T | 8.6% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 8.6% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,720,240 | A→T | 6.4% | N122I (AAT→ATT) | slyB → | outer membrane lipoprotein |
| RA | 1,736,097 | T→A | 6.6% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 6.7% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,770,203 | T→A | 5.1% | intergenic (+17/‑169) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,204 | C→G | 5.1% | intergenic (+18/‑168) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,205 | T→A | 5.7% | intergenic (+19/‑167) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,792,242 | T→A | 6.0% | intergenic (‑222/+25) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,795,227 | A→T | 9.8% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 9.9% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 9.8% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,797,388 | G→T | 9.4% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 9.3% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,799,370 | Δ1 bp | 6.9% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 6.5% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,810,062 | T→C | 5.7% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 5.7% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 5.8% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 5.6% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,823,335 | G→C | 9.8% | intergenic (+50/‑180) | nadE → / → cho | NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair |
| RA | 1,823,338 | G→C | 10.1% | intergenic (+53/‑177) | nadE → / → cho | NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair |
| RA | 1,829,322 | A→C | 6.1% | L138R (CTG→CGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,328 | C→G | 5.8% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,334 | G→T | 5.9% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,856,333 | T→G | 6.3% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 6.4% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,865,682 | G→C | 11.0% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,859 | Δ1 bp | 6.6% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,868,865:1 | +G | 6.6% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,883,027 | C→G | 6.5% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter |
| RA | 1,888,030 | A→T | 7.2% | intergenic (‑39/+31) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,032 | T→A | 7.0% | intergenic (‑41/+29) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,034 | A→T | 7.1% | intergenic (‑43/+27) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,891,841 | A→G | 6.6% | G465G (GGT→GGC) ‡ | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,891,842 | C→T | 6.6% | G465D (GGT→GAT) ‡ | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,932,094 | C→G | 6.6% | intergenic (+35/+21) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,095 | T→A | 6.5% | intergenic (+36/+20) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,096 | C→G | 6.6% | intergenic (+37/+19) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 13.3% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,442 | Δ1 bp | 8.7% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,450:1 | +A | 9.8% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,999,231 | T→A | 8.6% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,009,731 | A→G | 7.5% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 7.3% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 7.3% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,024,609 | T→G | 5.4% | intergenic (+18/+26) | rcsA → / ← dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
| RA | 2,024,610 | T→A | 5.2% | intergenic (+19/+25) | rcsA → / ← dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
| RA | 2,024,611 | T→A | 5.1% | intergenic (+20/+24) | rcsA → / ← dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
| RA | 2,028,158 | G→C | 6.3% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 6.4% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 6.4% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,032,336 | G→C | 7.4% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,074,691 | C→G | 7.0% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 13.2% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,081,688 | A→T | 7.6% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,090,122 | A→G | 11.5% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 11.2% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 11.1% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 6.8% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 6.8% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 6.8% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,133,453 | T→G | 5.1% | intergenic (‑56/+37) | wcaA ← / ← wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase |
| RA | 2,140,400 | G→A | 6.0% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,140,401 | T→C | 6.1% | P404P (CCA→CCG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,332 | C→T | 5.5% | intergenic (‑128/+180) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,337 | G→T | 5.5% | intergenic (‑133/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,229,322 | C→G | 7.0% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 7.0% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,247,030 | G→A | 6.1% | intergenic (‑261/+33) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
| RA | 2,247,031 | G→A | 6.1% | intergenic (‑262/+32) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
| RA | 2,247,032 | T→C | 6.2% | intergenic (‑263/+31) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
| RA | 2,247,033 | T→C | 6.2% | intergenic (‑264/+30) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
| RA | 2,255,991 | A→T | 6.6% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 6.6% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,282,830 | T→C | 6.2% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 6.3% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 7.1% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 6.4% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,286,311 | C→G | 7.9% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 7.8% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 8.0% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,305,085 | A→G | 10.2% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 10.2% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 10.2% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 8.6% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 8.2% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,314,800 | A→C | 7.4% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 7.5% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,325,037:1 | +T | 6.0% | coding (282/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,325,042 | Δ1 bp | 5.7% | coding (287/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,364,995 | T→G | 6.8% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 6.6% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,373,177 | G→A | 5.2% | G96S (GGC→AGC) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,373,180 | T→C | 5.3% | W97R (TGG→CGG) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
| RA | 2,375,483 | A→T | 7.1% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 7.1% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,956 | A→T | 6.7% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 6.8% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,390,012 | Δ1 bp | 5.6% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 5.7% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,425,968 | T→G | 5.3% | intergenic (‑52/+38) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,971 | C→A | 5.2% | intergenic (‑55/+35) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,432,985 | A→G | 5.0% | intergenic (‑43/+27) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,990 | G→C | 6.0% | intergenic (‑48/+22) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,995 | C→T | 6.2% | intergenic (‑53/+17) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,440,865 | C→T | 5.3% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 5.1% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,462,677 | A→T | 7.3% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 7.1% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 7.6% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,474,878 | T→C | 9.1% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 9.3% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,518,082 | C→G | 6.0% | noncoding (35/76 nt) | alaX ← | tRNA‑Ala |
| RA | 2,518,197 | C→G | 5.3% | noncoding (35/76 nt) | alaW ← | tRNA‑Ala |
| RA | 2,521,344 | C→T | 7.4% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 7.3% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 7.2% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,525,907 | G→A | 6.9% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 6.8% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,566,266 | C→A | 5.9% | G207C (GGC→TGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,267 | T→G | 5.9% | A206A (GCA→GCC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,589,122 | G→A | 5.6% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 5.8% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,620,216 | C→T | 5.3% | intergenic (‑56/+30) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,218 | T→A | 5.1% | intergenic (‑58/+28) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,220 | A→G | 5.0% | intergenic (‑60/+26) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,622,348:1 | +A | 6.8% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 6.7% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,630,918 | A→T | 5.7% | intergenic (+53/+40) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,919 | G→A | 5.7% | intergenic (+54/+39) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,920 | T→C | 5.7% | intergenic (+55/+38) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,921 | A→T | 5.8% | intergenic (+56/+37) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,632,584 | A→T | 5.2% | intergenic (‑49/+20) | guaA ← / ← guaB | GMP synthetase (glutamine aminotransferase)/IMP dehydrogenase |
| RA | 2,637,433 | C→T | 8.5% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 8.8% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 8.9% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 8.8% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,638,584 | A→T | 6.0% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,367 | G→A | 13.6% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 14.1% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,658,422 | C→G | 6.9% | A172P (GCG→CCG) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,663,466 | G→T | 5.3% | V9L (GTG→TTG) | suhB → | inositol monophosphatase |
| RA | 2,663,482 | A→C | 5.1% | K14T (AAG→ACG) | suhB → | inositol monophosphatase |
| RA | 2,672,639 | A→C | 6.0% | Q198P (CAG→CCG) ‡ | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
| RA | 2,672,640 | G→T | 6.0% | Q198H (CAG→CAT) ‡ | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
| RA | 2,673,783 | G→A | 6.3% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 6.8% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,790 | G→T | 5.9% | intergenic (+22/+26) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,791 | A→C | 5.4% | intergenic (+23/+25) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 5.4% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,798 | T→C | 5.2% | intergenic (+30/+18) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,679,430 | Δ1 bp | 8.7% | intergenic (‑63/+34) | yphF ← / ← yphG | putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein |
| RA | 2,679,434:1 | +C | 8.7% | intergenic (‑67/+30) | yphF ← / ← yphG | putative sugar ABC transporter periplasmic binding protein/DUF4380 domain‑containing TPR repeat protein |
| RA | 2,691,169 | A→T | 5.3% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 5.3% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 5.3% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,706,606 | G→T | 5.4% | L173L (CTC→CTA) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,607 | A→C | 5.5% | L173R (CTC→CGC) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,716,030 | T→G | 9.4% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 8.1% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 6.4% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 6.4% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 6.4% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,412 | A→T | 7.1% | A95A (GCA→GCT) | yfiM → | putative lipoprotein |
| RA | 2,724,413 | A→T | 7.2% | S96C (AGC→TGC) | yfiM → | putative lipoprotein |
| RA | 2,731,073 | A→T | 5.3% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 5.1% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,736,911 | C→T | 6.6% | intergenic (+28/‑243) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,913 | T→A | 6.5% | intergenic (+30/‑241) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,914 | T→A | 6.5% | intergenic (+31/‑240) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,916 | A→G | 6.4% | intergenic (+33/‑238) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,737,703 | A→G | 6.4% | intergenic (+57/‑42) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,705 | A→T | 6.4% | intergenic (+59/‑40) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,707 | C→T | 6.5% | intergenic (+61/‑38) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,711 | G→A | 7.2% | intergenic (+65/‑34) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,750,078 | T→G | 5.6% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 6.1% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 6.0% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,753,986 | A→T | 8.3% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,761,620 | T→G | 12.9% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 13.0% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,778,123 | G→T | 6.7% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 6.5% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,800,515 | C→A | 8.1% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 8.0% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 7.6% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,807,091 | T→C | 7.0% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 7.0% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 6.9% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,814,174 | T→A | 9.4% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 9.4% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,860 | A→G | 7.0% | noncoding (59/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,814,861 | C→T | 6.8% | noncoding (60/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,822,673 | C→T | 6.2% | intergenic (‑34/+35) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,678 | G→T | 6.2% | intergenic (‑39/+30) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,679 | A→C | 6.2% | intergenic (‑40/+29) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,684 | A→G | 6.3% | intergenic (‑45/+24) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,849,945 | A→T | 5.2% | intergenic (‑96/+29) | hycB ← / ← hycA | hydrogenase 3, Fe‑S subunit/regulator of the transcriptional regulator FhlA |
| RA | 2,856,257 | G→C | 6.6% | L640L (CTG→CTC) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,856,258 | G→C | 6.6% | E641Q (GAG→CAG) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,859,332 | T→G | 7.6% | L747R (CTC→CGC) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,859,333 | C→A | 7.6% | L747L (CTC→CTA) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,866,487 | G→C | 7.3% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 7.3% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 5.9% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 6.0% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 6.0% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,890,613 | A→T | 6.2% | V429E (GTG→GAG) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,890,617 | G→T | 6.7% | R428S (CGC→AGC) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,890,619 | T→A | 6.1% | D427V (GAC→GTC) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,890,621 | A→C | 6.0% | A426A (GCT→GCG) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,890,625 | A→T | 5.8% | L425H (CTC→CAC) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,900,322 | C→T | 8.1% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 8.0% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 7.9% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,907,998 | A→T | 6.3% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,923,969 | C→G | 5.8% | E49Q (GAG→CAG) | yqcC ← | DUF446 family protein |
| RA | 2,923,970 | C→G | 5.3% | L48L (CTG→CTC) | yqcC ← | DUF446 family protein |
| RA | 2,939,331 | A→G | 5.3% | intergenic (+21/‑37) | fucU → / → fucR | L‑fucose mutarotase/l‑fucose operon activator |
| RA | 2,939,333 | G→C | 5.3% | intergenic (+23/‑35) | fucU → / → fucR | L‑fucose mutarotase/l‑fucose operon activator |
| RA | 2,939,335 | C→T | 5.2% | intergenic (+25/‑33) | fucU → / → fucR | L‑fucose mutarotase/l‑fucose operon activator |
| RA | 2,971,146 | T→C | 5.6% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 5.6% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 5.3% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 5.4% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,972,652 | A→T | 8.5% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 8.4% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 3,020,510 | G→T | 6.3% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 5.8% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 6.4% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,031,221 | T→A | 6.0% | intergenic (‑290/‑146) | ygfT ← / → uacT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit/uric acid permease |
| RA | 3,056,124 | A→T | 5.1% | noncoding (142/183 nt) | ssrS → | 6S RNA inhibits RNA polymerase promoter binding |
| RA | 3,056,125 | G→T | 5.2% | noncoding (143/183 nt) | ssrS → | 6S RNA inhibits RNA polymerase promoter binding |
| RA | 3,061,036 | C→A | 5.6% | P63T (CCG→ACG) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,066,319 | Δ1 bp | 6.1% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,106,992 | G→A | 5.9% | intergenic (+22/+28) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,106,995 | A→T | 6.7% | intergenic (+25/+25) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,106,996 | G→T | 6.2% | intergenic (+26/+24) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,106,997 | A→C | 6.2% | intergenic (+27/+23) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,106,998 | A→T | 6.2% | intergenic (+28/+22) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,107,001 | T→C | 6.0% | intergenic (+31/+19) | nupG → / ← speC | nucleoside transporter/ornithine decarboxylase, constitutive |
| RA | 3,135,356 | T→C | 5.1% | Q339R (CAG→CGG) ‡ | pitB ← | phosphate transporter |
| RA | 3,135,357 | G→A | 5.1% | Q339* (CAG→TAG) ‡ | pitB ← | phosphate transporter |
| RA | 3,156,590 | C→A | 12.5% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 12.4% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,171,852 | C→T | 6.8% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 6.2% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 6.3% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 6.4% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,180,497 | Δ1 bp | 7.2% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 11.9% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 12.1% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 6.2% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 9.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 8.6% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,186,137 | A→T | 5.4% | intergenic (+47/‑50) | yqiG → / → insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| RA | 3,186,138 | A→T | 5.4% | intergenic (+48/‑49) | yqiG → / → insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| RA | 3,206,172 | T→C | 6.8% | T29A (ACG→GCG) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,206,176 | C→A | 7.6% | A27A (GCG→GCT) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,206,179 | T→G | 6.9% | A26A (GCA→GCC) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,206,183 | G→A | 7.1% | A25V (GCC→GTC) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,239,609 | T→G | 5.7% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 5.4% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 5.9% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,271,825 | T→A | 7.3% | intergenic (‑55/+42) | garK ← / ← garR | glycerate kinase I/tartronate semialdehyde reductase |
| RA | 3,276,886 | C→A | 6.2% | intergenic (+33/‑116) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,887 | T→C | 6.0% | intergenic (+34/‑115) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,890 | G→A | 6.2% | intergenic (+37/‑112) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,891 | T→G | 6.2% | intergenic (+38/‑111) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,288,032 | C→A | 10.8% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 10.7% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,291,109 | A→T | 5.2% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 5.2% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,309,004 | C→T | 6.2% | intergenic (‑80/+29) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,009 | C→T | 6.9% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 7.7% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,318,079 | A→T | 7.6% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,080 | A→T | 7.6% | intergenic (‑74/+133) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,324,952 | A→G | 5.0% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 5.9% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 5.8% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 5.8% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,334,703 | A→G | 6.1% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 6.1% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 6.1% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,368,181 | C→G | 5.6% | P119A (CCG→GCG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,189 | A→G | 5.7% | A121A (GCA→GCG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,982 | G→C | 6.0% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,400,846 | A→T | 5.5% | I81N (ATC→AAC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,849 | A→T | 5.6% | V80D (GTT→GAT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,401,582 | A→T | 6.3% | L584Q (CTG→CAG) | csrD ← | targeting factor for csrBC sRNA degradation |
| RA | 3,439,588 | G→C | 15.5% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 15.0% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,448,275 | T→G | 5.8% | intergenic (‑126/+39) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,276 | T→A | 5.8% | intergenic (‑127/+38) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,277 | T→A | 5.8% | intergenic (‑128/+37) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,278 | C→A | 5.6% | intergenic (‑129/+36) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,470,106 | C→T | 6.5% | intergenic (‑253/+39) | chiA ← / ← tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| RA | 3,477,878 | T→A | 9.1% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,505,785 | A→T | 5.7% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,563,539 | T→C | 6.1% | intergenic (+21/+248) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,546 | T→G | 6.3% | intergenic (+28/+241) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,547 | C→A | 6.8% | intergenic (+29/+240) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,577,657 | A→G | 5.5% | intergenic (‑65/+74) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,577,660 | C→T | 5.5% | intergenic (‑68/+71) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,657,599 | T→A | 8.8% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 8.6% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 9.0% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,674,402 | T→G | 5.1% | intergenic (+27/‑384) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,674,403 | T→C | 5.1% | intergenic (+28/‑383) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,702,835 | G→A | 5.4% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 5.5% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 5.6% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,708,595 | G→A | 6.3% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 6.4% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 6.4% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 7.4% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 7.1% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,774,207 | C→T | 7.4% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 7.2% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 7.1% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 6.8% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 7.2% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 7.0% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 7.0% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,798,234 | A→T | 7.0% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 7.1% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,888,219 | T→A | 5.3% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,891,502 | C→G | 5.9% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 5.4% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.5% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,900,410 | A→T | 7.2% | P56P (CCT→CCA) | yieL ← | putative xylanase |
| RA | 3,920,796 | T→C | 5.7% | A31A (GCA→GCG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,920,809 | G→A | 5.4% | P27L (CCG→CTG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,938,255 | T→A | 5.0% | L10Q (CTG→CAG) | rbsR → | transcriptional repressor of ribose metabolism |
| RA | 3,959,480 | A→T | 7.6% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 7.7% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,515 | T→A | 7.7% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,415 | A→C | 6.0% | L272R (CTG→CGG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,416 | G→T | 6.1% | L272M (CTG→ATG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,970,813 | Δ1 bp | 5.1% | coding (681/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,970,817:1 | +G | 5.1% | coding (685/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| JC | 3,993,142 | Δ6 bp | 100% | coding (1990‑1995/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,015,333 | A→T | 6.0% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,041,216 | T→C | 9.1% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 9.1% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 9.1% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 9.1% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 5.8% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 5.7% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,051,259 | G→T | 5.7% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 6.2% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,056,531 | A→G | 5.1% | intergenic (‑192/+94) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,539 | T→A | 6.8% | intergenic (‑200/+86) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,056,540 | T→A | 6.8% | intergenic (‑201/+85) | glnL ← / ← glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| RA | 4,060,261 | G→T | 7.7% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 7.7% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 9.5% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,070,410 | C→A | 5.4% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,413 | T→G | 8.0% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,082,696 | G→C | 6.6% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,127,251 | C→T | 9.1% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 9.1% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,147,304 | G→C | 5.0% | R56P (CGG→CCG) | frwD → | putative enzyme IIB component of PTS |
| RA | 4,168,349 | A→G | 5.0% | intergenic (+149/‑23) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,168,350 | A→T | 5.0% | intergenic (+150/‑22) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,168,351 | C→T | 5.4% | intergenic (+151/‑21) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,171,438 | T→A | 68.6% | noncoding (2798/2904 nt) | rrlB → | 23S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 10.8% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 10.4% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,213,179 | Δ1 bp | 5.9% | intergenic (+20/‑55) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,182 | A→T | 5.7% | intergenic (+23/‑52) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,185 | A→T | 5.8% | intergenic (+26/‑49) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,187:1 | +A | 5.9% | intergenic (+28/‑47) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,262,250 | G→C | 5.7% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 5.7% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,274,740 | G→A | 6.3% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 6.3% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 6.2% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,296,060 | C→T | 17.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,307,294 | A→T | 8.8% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 9.1% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,312,074 | C→T | 7.0% | intergenic (‑32/+27) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,080 | G→C | 6.6% | intergenic (‑38/+21) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,083 | G→C | 6.7% | intergenic (‑41/+18) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,312,089 | A→G | 6.9% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,314,227 | A→T | 6.0% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 7.2% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,239 | A→T | 5.4% | intergenic (+42/+105) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,332,868 | G→T | 6.5% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 5.8% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,335,654 | T→A | 6.8% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 7.0% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,356,445 | A→T | 8.3% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 8.2% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 5.6% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 5.7% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 9.9% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 10.7% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,377,791 | A→T | 6.7% | intergenic (‑69/+20) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,377,792 | A→T | 6.0% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,392,394 | C→G | 6.7% | noncoding (35/76 nt) | glyV → | tRNA‑Gly |
| RA | 4,392,617 | C→G | 5.0% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,422,887 | G→A | 5.4% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 5.5% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,424,465 | G→T | 5.1% | intergenic (+79/+51) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,424,468 | A→C | 5.2% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,439,845 | T→A | 6.1% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,457,246 | T→A | 5.2% | intergenic (+88/+68) | mpl → / ← yjgA | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase/ribosome‑associated UPF0307 family protein |
| RA | 4,470,952 | T→C | 5.1% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,472,434 | G→A | 8.9% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 8.8% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 8.7% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 8.7% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 8.5% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,520,500 | Δ1 bp | 11.7% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 12.0% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 8.0% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 8.1% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,549,932 | T→A | 5.3% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,612,329 | A→G | 6.2% | intergenic (+40/‑82) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,330 | G→C | 6.0% | intergenic (+41/‑81) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,331 | C→T | 6.1% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,638,690 | C→T | 12.3% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 12.2% | T172A (ACC→GCC) | creD → | inner membrane protein |
| RA | 4,639,554 | A→T | 6.2% | intergenic (+24/+36) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,555 | A→T | 6.2% | intergenic (+25/+35) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,556 | A→T | 6.3% | intergenic (+26/+34) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,557 | A→T | 6.8% | intergenic (+27/+33) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423741–3424234 | 3424562–3424238 | 5–822 | 95 [88] | [91] 94 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 3 (0.020) | 3/242 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 183652 = | 166 (0.900) | 12 (0.070) | 8/236 | NT | 7.5% | intergenic (+32/+57) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913 | 183685 = | 145 (0.860) | intergenic (+65/+24) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| * | ? | NC_000913 | 224368 = | NA (NA) | 7 (0.040) | 4/242 | NT | NA | noncoding (598/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224411 = | NA (NA) | noncoding (641/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 267777 = | 184 (1.000) | 9 (0.050) | 5/244 | NT | 5.1% | coding (229/822 nt) | yafZ | CP4‑6 prophage; conserved protein |
| ? | NC_000913 | 267800 = | 162 (0.930) | coding (206/822 nt) | yafZ | CP4‑6 prophage; conserved protein | |||||
| * | ? | NC_000913 | 274038 = | NA (NA) | 8 (0.050) | 5/244 | NT | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274083 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274213 | NA (NA) | 16 (0.090) | 11/246 | NT | NA | noncoding (937/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274218 | NA (NA) | noncoding (932/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274419 | NA (NA) | 44 (0.250) | 13/246 | NT | NA | noncoding (731/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274423 | NA (NA) | noncoding (727/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 7 (0.040) | 7/242 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.040) | 5/238 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 503443 = | 162 (0.880) | 8 (0.050) | 5/234 | NT | 5.4% | intergenic (‑205/+33) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein |
| ? | NC_000913 | 503470 = | 130 (0.770) | intergenic (‑232/+6) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein | |||||
| * | ? | NC_000913 | 597028 = | 177 (0.960) | 9 (0.050) | 9/244 | NT | 5.4% | intergenic (+55/‑103) | cusC/cusF | copper/silver efflux system, outer membrane component/periplasmic copper‑ and silver‑binding protein |
| ? | NC_000913 | 803402 = | 145 (0.830) | intergenic (+82/‑101) | ybhI/ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein | |||||
| * | ? | NC_000913 | 807402 = | 164 (0.890) | 10 (0.060) | 9/238 | NT | 6.5% | intergenic (‑121/+31) | ybhC/ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family |
| ? | NC_000913 | 807425 = | 135 (0.790) | intergenic (‑144/+8) | ybhC/ybhB | acyl‑CoA thioesterase, lipoprotein/kinase inhibitor homolog, UPF0098 family | |||||
| * | ? | NC_000913 | = 902202 | 170 (0.930) | 10 (0.060) | 7/246 | NT | 6.0% | coding (49/717 nt) | artQ | arginine ABC transporter permease |
| ? | NC_000913 | = 902224 | 151 (0.860) | coding (27/717 nt) | artQ | arginine ABC transporter permease | |||||
| * | ? | NC_000913 | = 984461 | NA (NA) | 5 (0.030) +TAAC |
5/248 | NT | NA | intergenic (+164/+58) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent |
| ? | NC_000913 | 3774201 = | NA (NA) | intergenic (+7/‑223) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | = 1203761 | 180 (0.980) | 12 (0.070) | 9/240 | NT | 6.5% | coding (494/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | = 1203775 | 175 (1.020) | coding (508/558 nt) | ymfL | e14 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 1207790 = | 88 (0.480) | 90 (0.560) | 67/224 | NT | 52.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 86 (0.530) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 85 (0.460) | 79 (0.490) | 52/224 | NT | 49.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 86 (0.530) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1269130 = | NA (NA) | 6 (0.030) | 6/244 | NT | 8.4% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | NC_000913 | 1269154 = | 69 (0.380) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
| * | ? | NC_000913 | 1279366 = | 130 (0.710) | 8 (0.050) | 8/246 | NT | 5.6% | intergenic (+18/‑498) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279464 = | 145 (0.820) | intergenic (+116/‑400) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 212 (1.190) | 120/248 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1396531 = | NA (NA) | 5 (0.030) | 4/244 | NT | NA | noncoding (488/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428264 | NA (NA) | noncoding (531/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1629047 = | 159 (0.870) | 16 (0.090) | 8/244 | NT | 9.6% | intergenic (+9/‑168) | rspR/ydfZ | transcriptional repressor for rspAB/selenoprotein, function unknown |
| ? | NC_000913 | 1629071 = | 150 (0.860) | intergenic (+33/‑144) | rspR/ydfZ | transcriptional repressor for rspAB/selenoprotein, function unknown | |||||
| * | ? | NC_000913 | = 1886825 | 79 (0.430) | 6 (0.040) | 4/234 | NT | 7.7% | intergenic (+15/+39) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D |
| ? | NC_000913 | = 1886846 | 71 (0.420) | intergenic (+36/+18) | yeaX/rnd | putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D | |||||
| * | ? | NC_000913 | 2412629 = | 200 (1.090) | 14 (0.080) | 10/236 | NT | 7.2% | intergenic (‑35/+48) | yfbU/yfbV | UPF0304 family protein/UPF0208 family inner membrane protein |
| ? | NC_000913 | 2412656 = | 174 (1.030) | intergenic (‑62/+21) | yfbU/yfbV | UPF0304 family protein/UPF0208 family inner membrane protein | |||||
| * | ? | NC_000913 | = 2641725 | 145 (0.790) | 10 (0.060) | 7/240 | NT | 6.7% | coding (80/1119 nt) | ispG | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
| ? | NC_000913 | = 2641730 | 141 (0.820) | coding (75/1119 nt) | ispG | 1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase | |||||
| * | ? | NC_000913 | = 2644346 | 127 (0.690) | 7 (0.040) | 7/244 | NT | 5.3% | intergenic (‑63/+87) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase |
| ? | NC_000913 | = 2644366 | 129 (0.740) | intergenic (‑83/+67) | rlmN/ndk | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 75 (0.430) | 28/244 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2729475 = | 73 (0.400) | 12 (0.070) | 7/236 | NT | 15.5% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 64 (0.380) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 2729484 | 76 (0.410) | 6 (0.030) | 3/252 | NT | 7.4% | intergenic (‑40/+132) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 3943437 = | NA (NA) | noncoding (3/76 nt) | gltU | tRNA‑Glu | |||||
| * | ? | NC_000913 | 2794028 = | NA (NA) | 6 (0.030) | 5/244 | NT | NA | noncoding (1/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 2794059 = | NA (NA) | noncoding (32/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 3028494 = | 142 (0.770) | 11 (0.060) | 8/238 | NT | 7.9% | intergenic (+6/+30) | ghxQ/ygfS | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit |
| ? | NC_000913 | 3028518 = | 123 (0.720) | intergenic (+30/+6) | ghxQ/ygfS | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative 4Fe‑4S ferredoxin‑type oxidoreductase subunit | |||||
| * | ? | NC_000913 | = 3101756 | NA (NA) | 6 (0.030) | 5/242 | NT | NA | noncoding (61/79 nt) | REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4470461 | NA (NA) | noncoding (81/88 nt) | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP339 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3203194 | 123 (0.670) | 9 (0.050) | 5/254 | NT | 6.9% | noncoding (51/125 nt) | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 3203228 | NA (NA) | noncoding (85/125 nt) | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 3255287 | NA (NA) | 5 (0.030) | 4/244 | NT | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 3255319 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3423376 = | 127 (0.690) | 33 (0.190) +TTGATGT |
12/242 | NT | 21.6% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423672 = | NA (NA) | noncoding (116/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 9 (0.050) | 9/242 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 7 (0.040) | 5/244 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 24 (0.140) | 10/244 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620621 = | NA (NA) | 13 (0.070) | 9/244 | NT | 100% | coding (1430/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620630 = | 0 (0.000) | coding (1439/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3621402 = | NA (NA) | 19 (0.110) | 13/244 | NT | 100% | coding (2211/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3621407 = | 0 (0.000) | coding (2216/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3721045 = | 229 (1.250) | 638 (3.500) | 193/254 | NT | 76.3% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 170 (0.930) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 4089681 = | 177 (0.960) | 10 (0.060) | 9/240 | NT | 5.8% | coding (175/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain |
| ? | NC_000913 | 4089713 = | 157 (0.910) | coding (143/1749 nt) | frvR | putative frv operon regulator; contains a PTS EIIA domain | |||||
| * | ? | NC_000913 | = 4171445 | 0 (0.000) | 10 (0.060) | 18/250 | NT | 100% | noncoding (2805/2904 nt) | rrlB | 23S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4212832 | NA (NA) | noncoding (2790/2904 nt) | rrlE | 23S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 4171803 | 119 (0.650) | 13 (0.070) | 3/252 | NT | 10.0% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | = 4213162 | NA (NA) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | 4228431 = | 193 (1.050) | 11 (0.060) | 8/248 | NT | 5.6% | coding (701/1632 nt) | yjbB | putative Na+/Pi‑cotransporter |
| ? | NC_000913 | 4228451 = | 182 (1.020) | coding (721/1632 nt) | yjbB | putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913 | = 4263218 | 167 (0.910) | 11 (0.060) | 9/240 | NT | 6.3% | intergenic (+136/+30) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent |
| ? | NC_000913 | = 4263241 | 171 (0.990) | intergenic (+159/+7) | pspG/qorA | phage shock protein G/quinone oxidoreductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | = 4296067 | 153 (0.830) | 7 (0.040) | 5/242 | NT | 5.0% | noncoding (233/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4296086 | 120 (0.690) | noncoding (252/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4319852 | 128 (0.700) | 8 (0.050) | 7/246 | NT | 6.1% | coding (812/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit |
| ? | NC_000913 | = 4319861 | 124 (0.700) | coding (803/1065 nt) | phnI | ribophosphonate triphosphate synthase complex putative catalytic subunit | |||||