breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 287 Δ1 bp 6.4% intergenic (+32/‑50) thrL → / → thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1
RA 291 A→T 6.2% intergenic (+36/‑46) thrL → / → thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1
RA 293:1 +G 6.3% intergenic (+38/‑44) thrL → / → thrA thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1
RA 9,907 A→C 8.3% intergenic (+14/+21) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 9,908 G→T 8.3% intergenic (+15/+20) mog → / ← satP molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter
RA 15,318 G→A 8.4% intergenic (+20/‑127) dnaJ → / → insL1 chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA 15,319 T→C 8.4% intergenic (+21/‑126) dnaJ → / → insL1 chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
RA 16,926 C→A 5.1% R12L (CGT→CTT)  mokC ← regulatory protein for HokC, overlaps CDS of hokC
RA 17,527 G→C 7.9% S13S (TCG→TCC nhaA → sodium‑proton antiporter
RA 17,528 G→C 7.9% G14R (GGA→CGA)  nhaA → sodium‑proton antiporter
RA 53,376 G→A 16.4% P14L (CCC→CTC)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 53,379 T→C 15.2% E13G (GAG→GGG)  pdxA ← 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent
RA 83,587 A→C 10.0% intergenic (‑58/+35) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 83,590 G→T 10.0% intergenic (‑61/+32) leuA ← / ← leuL 2‑isopropylmalate synthase/leu operon leader peptide
RA 85,337 G→T 5.3% intergenic (+25/‑293) leuO → / → ilvI global transcription factor/acetolactate synthase 3 large subunit
RA 85,338 A→C 6.1% intergenic (+26/‑292) leuO → / → ilvI global transcription factor/acetolactate synthase 3 large subunit
RA 87,881 A→G 7.8% intergenic (+33/‑147) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,884 T→A 8.0% intergenic (+36/‑144) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 87,887 C→T 9.7% intergenic (+39/‑141) ilvH → / → cra acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism
RA 95,070 G→A 5.2% V141I (GTA→ATA) ‡ murF → UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA 95,071 T→C 5.1% V141A (GTA→GCA) ‡ murF → UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase
RA 120,154 Δ1 bp 8.3% intergenic (+19/+24) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 120,158:1 +A 8.7% intergenic (+23/+20) ampE → / ← aroP ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter
RA 124,344 C→G 5.9% P443R (CCG→CGG)  aceE → pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding
RA 151,519 A→C 5.1% I27M (ATT→ATG yadK ← putative fimbrial‑like adhesin protein
RA 164,620 C→T 7.4% intergenic (+86/‑110) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 164,621 A→G 7.5% intergenic (+87/‑109) hrpB → / → mrcB putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase
RA 217,030 C→T 5.1% intergenic (‑27/+27) yaeF ← / ← proS putative lipoprotein/prolyl‑tRNA synthetase
RA 256,449 T→C 7.0% intergenic (+14/‑78) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,454 C→G 7.0% intergenic (+19/‑73) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
RA 256,459 G→A 7.7% intergenic (+24/‑68) gpt → / → frsA xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity
MC JC 257,908 Δ776 bp 100% [crl] [crl]
RA 272,330:1 +G 5.2% intergenic (+141/‑250) insN → / → eyeA pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/novel sRNA, function unknown, CP4‑6 propahge
RA 282,513 T→C 6.3% L79P (CTG→CCG)  yagE → 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA 282,518 G→A 5.5% G81S (GGC→AGC)  yagE → 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage
RA 285,882 T→G 6.9% I163S (ATC→AGC)  yagG → CP4‑6 prophage; putative sugar transporter
RA 285,887 C→A 6.2% L165M (CTG→ATG)  yagG → CP4‑6 prophage; putative sugar transporter
RA 289,256 G→C 5.2% intergenic (‑94/+45) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 289,257 T→A 5.1% intergenic (‑95/+44) yagI ← / ← argF CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage
RA 314,255 T→C 5.0% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 314,258 G→A 5.8% intergenic (‑453/‑99) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
RA 317,566 G→A 5.5% pseudogene (128/129 nt) ykgQ → pseudogene, putative dehydrogenase
RA 361,901 T→G 5.1% intergenic (‑41/+25) lacA ← / ← lacY thiogalactoside acetyltransferase/lactose permease
RA 420,941 T→A 6.1% intergenic (+31/‑45) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 420,942 G→T 6.8% intergenic (+32/‑44) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 420,945 A→C 6.0% intergenic (+35/‑41) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 420,946 T→A 6.0% intergenic (+36/‑40) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
RA 443,022 G→A 7.6% intergenic (+25/+29) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 443,023 T→C 7.5% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
RA 448,363 A→T 5.6% S100T (TCC→ACC)  cyoC ← cytochrome o ubiquinol oxidase subunit III
RA 448,364 G→T 5.1% I99I (ATC→ATA cyoC ← cytochrome o ubiquinol oxidase subunit III
RA 448,367 A→C 5.2% V98V (GTT→GTG) ‡ cyoC ← cytochrome o ubiquinol oxidase subunit III
RA 448,368 A→T 5.4% V98D (GTT→GAT) ‡ cyoC ← cytochrome o ubiquinol oxidase subunit III
RA 448,965 G→A 7.3% H559H (CAC→CAT) ‡ cyoB ← cytochrome o ubiquinol oxidase subunit I
RA 448,966 T→C 7.4% H559R (CAC→CGC) ‡ cyoB ← cytochrome o ubiquinol oxidase subunit I
RA 464,354 C→A 6.0% intergenic (+46/‑48) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,356 A→T 5.9% intergenic (+48/‑46) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 464,358 T→G 6.5% intergenic (+50/‑44) ybaV → / → fadM putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III
RA 475,971 C→G 11.1% intergenic (+20/+11) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 475,972 C→G 11.0% intergenic (+21/+10) ybaY → / ← ybaZ outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL
RA 481,225 T→G 14.7% intergenic (‑517/+29) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 481,228 C→A 13.8% intergenic (‑520/+26) tomB ← / ← acrB Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein
RA 499,459 A→C 5.4% L172R (CTC→CGC) ‡ aes ← acetyl esterase
RA 499,460 G→T 5.3% L172I (CTC→ATC) ‡ aes ← acetyl esterase
RA 533,846 T→C 6.7% intergenic (+20/‑70) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 533,849 G→A 7.0% intergenic (+23/‑67) allR → / → gcl glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase
RA 543,091 G→C 5.2% intergenic (+58/+170) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 543,094 G→C 5.2% intergenic (+61/+167) glxK → / ← allE glycerate kinase II/S‑ureidoglycine aminohydrolase
RA 569,160 G→T 7.1% D87Y (GAC→TAC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 569,161 A→C 6.4% D87A (GAC→GCC) ‡ ybcK → DLP12 prophage; putative recombinase
RA 594,946 C→A 8.8% Q166H (CAG→CAT) ‡ cusR ← response regulator in two‑component regulatory system with CusS
RA 594,948 G→C 8.8% Q166E (CAG→GAG) ‡ cusR ← response regulator in two‑component regulatory system with CusS
RA 594,950 T→G 8.9% H165P (CAT→CCT)  cusR ← response regulator in two‑component regulatory system with CusS
RA 595,519 T→A 6.4% intergenic (‑76/‑81) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 595,520 T→A 5.7% intergenic (‑77/‑80) cusR ← / → cusC response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component
RA 603,391 C→G 7.0% intergenic (+56/+25) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,393 T→A 7.2% intergenic (+58/+23) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 603,395 C→G 6.8% intergenic (+60/+21) pheP → / ← ybdG phenylalanine transporter/mechanosensitive channel protein, miniconductance
RA 604,752 G→T 10.0% intergenic (‑89/+19) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 604,753 A→C 10.0% intergenic (‑90/+18) ybdG ← / ← nfsB mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive
RA 639,654 T→C 6.5% intergenic (+146/‑99) ahpC → / → ahpF alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding
RA 639,657 G→A 6.2% intergenic (+149/‑96) ahpC → / → ahpF alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding
RA 672,110 G→A 5.6% T26I (ACC→ATC)  lptE ← LPS assembly OM complex LptDE, lipoprotein component
RA 672,113 T→C 5.7% D25G (GAT→GGT)  lptE ← LPS assembly OM complex LptDE, lipoprotein component
RA 699,556 C→T 13.5% intergenic (‑379/+18) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 699,559 A→G 13.4% intergenic (‑382/+15) asnB ← / ← umpH asparagine synthetase B/UMP phosphatase
RA 710,170 C→T 8.6% intergenic (+54/+30) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 710,173 A→G 8.7% intergenic (+57/+27) chiQ → / ← fur chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor
RA 729,642 C→T 5.3% V20V (GTC→GTT rhsC → Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor
RA 770,679 G→T 5.7% intergenic (+68/‑779) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 770,682 A→C 5.7% intergenic (+71/‑776) mngB → / → cydA alpha‑mannosidase/cytochrome d terminal oxidase, subunit I
RA 773,554 G→A 5.1% L171L (CTG→CTA cydB → cytochrome d terminal oxidase, subunit II
RA 805,312 G→T 7.8% E604* (GAG→TAG) ‡ ybhJ → aconitase family protein
RA 805,313 A→C 7.7% E604A (GAG→GCG) ‡ ybhJ → aconitase family protein
RA 811,698 C→G 5.9% H59Q (CAC→CAG bioC → malonyl‑ACP O‑methyltransferase, SAM‑dependent
RA 815,666 T→G 6.2% intergenic (+119/+73) uvrB → / ← ybhK exision nuclease of nucleotide excision repair, DNA damage recognition component/putative CofD superfamily transferase
RA 815,667 C→A 6.0% intergenic (+120/+72) uvrB → / ← ybhK exision nuclease of nucleotide excision repair, DNA damage recognition component/putative CofD superfamily transferase
RA 847,213 A→T 8.1% intergenic (‑94/+45) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,214 T→A 8.1% intergenic (‑95/+44) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 847,215 A→T 8.0% intergenic (‑96/+43) glnP ← / ← glnH glutamine transporter subunit/glutamine transporter subunit
RA 850,993 T→C 6.7% intergenic (+28/+21) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,995 T→G 6.7% intergenic (+30/+19) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,996 C→A 6.6% intergenic (+31/+18) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 850,998 G→A 6.6% intergenic (+33/+16) ompX → / ← opgE outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase
RA 857,576 T→C 14.3% intergenic (+21/+220) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,578 C→G 14.3% intergenic (+23/+218) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 857,580 G→A 14.3% intergenic (+25/+216) ybiT → / ← ybiU ABC‑F family putative regulatory ATPase/DUF1479 family protein
RA 858,924 T→G 5.4% R46R (CGA→CGC ybiU ← DUF1479 family protein
RA 858,927 C→A 5.3% T45T (ACG→ACT ybiU ← DUF1479 family protein
RA 860,151 A→G 6.5% intergenic (‑123/+23) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,154 A→T 6.3% intergenic (‑126/+20) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 860,157 C→T 5.7% intergenic (‑129/+17) ybiV ← / ← ybiW sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase
RA 926,168 C→T 6.2% intergenic (‑197/+57) serW ← / ← infA tRNA‑Ser/translation initiation factor IF‑1
RA 926,174 A→T 6.0% intergenic (‑203/+51) serW ← / ← infA tRNA‑Ser/translation initiation factor IF‑1
RA 926,180 A→G 5.4% intergenic (‑209/+45) serW ← / ← infA tRNA‑Ser/translation initiation factor IF‑1
RA 983,117 G→A 13.6% G15S (GGT→AGT)  ycbK → M15A protease‑related family periplasmic protein
RA 987,560 G→C 16.6% intergenic (‑578/+25) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 987,561 G→C 16.5% intergenic (‑579/+24) ompF ← / ← asnS outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
RA 1,015,912 T→A 7.1% intergenic (+30/+40) rmf → / ← fabA ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase
RA 1,018,983 A→T 13.4% intergenic (+46/+30) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,018,986 A→T 13.2% intergenic (+49/+27) matP → / ← ompA Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d)
RA 1,100,789 G→T 5.9% intergenic (+2/+62) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,791 G→C 5.1% intergenic (+4/+60) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,100,793 A→C 5.1% intergenic (+6/+58) ycdZ → / ← csgG DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein
RA 1,113,544 G→A 8.2% intergenic (+138/‑35) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,546 T→A 8.2% intergenic (+140/‑33) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,113,548 T→C 7.9% intergenic (+142/‑31) opgH → / → yceK OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein
RA 1,129,394 G→C 6.8% intergenic (+20/+20) murJ → / ← flgN putative lipid II flippase/export chaperone for FlgK and FlgL
RA 1,136,026 G→T 5.5% V155L (GTA→TTA) ‡ flgH → flagellar protein of basal‑body outer‑membrane L ring
RA 1,136,027 T→A 5.2% V155E (GTA→GAA) ‡ flgH → flagellar protein of basal‑body outer‑membrane L ring
RA 1,136,028 A→C 5.4% V155V (GTA→GTC) ‡ flgH → flagellar protein of basal‑body outer‑membrane L ring
RA 1,147,980 G→T 5.6% K120N (AAG→AAT plsX → putative phosphate acyltransferase
RA 1,147,986 G→C 5.6% L122L (CTG→CTC plsX → putative phosphate acyltransferase
RA 1,147,987 G→C 5.6% E123Q (GAG→CAG)  plsX → putative phosphate acyltransferase
RA 1,147,993 A→C 5.2% I125L (ATT→CTT)  plsX → putative phosphate acyltransferase
RA 1,149,985 A→C 5.3% A86A (GCA→GCC fabD → malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA 1,149,988 G→C 5.3% M87I (ATG→ATC fabD → malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA 1,149,991 G→T 5.3% M88I (ATG→ATT fabD → malonyl‑CoA‑[acyl‑carrier‑protein] transacylase
RA 1,153,208 T→C 6.7% intergenic (+28/‑92) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,213 T→A 7.0% intergenic (+33/‑87) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,214 T→A 6.9% intergenic (+34/‑86) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,153,219 G→A 7.6% intergenic (+39/‑81) fabF → / → pabC 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex
RA 1,155,440 A→G 6.4% Q106R (CAG→CGG)  tmk → thymidylate kinase
RA 1,159,335 G→T 6.3% intergenic (+33/+27) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,159,336 A→C 6.7% intergenic (+34/+26) ptsG → / ← fhuE fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter
RA 1,174,077 G→A 9.5% intergenic (‑113/+15) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,174,080 T→C 9.3% intergenic (‑116/+12) mfd ← / ← ycfT transcription‑repair coupling factor/inner membrane protein
RA 1,233,154 T→A 5.2% intergenic (‑124/+22) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,233,157 T→A 5.3% intergenic (‑127/+19) dsbB ← / ← nhaB oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter
RA 1,253,830 C→G 5.3% S708T (AGT→ACT)  ycgV ← putative adhesin
RA 1,260,901 C→T 11.7% intergenic (‑98/+27) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,260,904 A→G 11.2% intergenic (‑101/+24) dauA ← / ← prs C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase
RA 1,292,472 G→A 8.6% intergenic (+107/+37) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA 1,292,473 C→G 9.6% intergenic (+108/+36) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
RA 1,292,474 T→C 8.0% intergenic (+109/+35) galU → / ← hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
JC JC 1,293,015 IS1 (+) +8 bp 44.6% intergenic (‑93/‑505) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
MC JC 1,299,499 Δ1,199 bp 100% intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
RA 1,306,787 G→A 6.4% intergenic (+19/+34) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,306,788 T→C 6.4% intergenic (+20/+33) oppF → / ← yciU oligopeptide ABC transporter ATPase/UPF0263 family protein
RA 1,311,830 A→G 11.9% intergenic (+22/+18) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,311,831 C→T 11.9% intergenic (+23/+17) tonB → / ← yciA membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase
RA 1,314,682 A→T 5.8% intergenic (+24/+36) ompW → / ← yciE outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA 1,314,683 T→A 5.6% intergenic (+25/+35) ompW → / ← yciE outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA 1,314,684 A→T 5.7% intergenic (+26/+34) ompW → / ← yciE outer membrane protein W/putative rubrerythrin/ferritin‑like metal‑binding protein
RA 1,324,837 A→C 9.2% Y31S (TAT→TCT) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,838 T→A 9.3% Y31* (TAT→TAA) ‡ yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,324,839 G→T 10.4% E32* (GAA→TAA)  yciQ → enhancer of membrane protein expression; putative inner membrane protein
RA 1,344,033 A→G 7.1% L105P (CTG→CCG)  yciT ← global regulator of transcription; DeoR family
RA 1,344,036 G→C 7.1% T104S (ACT→AGT)  yciT ← global regulator of transcription; DeoR family
RA 1,344,039 C→T 7.1% R103Q (CGG→CAG)  yciT ← global regulator of transcription; DeoR family
RA 1,355,187 A→G 6.1% V95A (GTG→GCG) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,355,188 C→T 6.1% V95M (GTG→ATG) ‡ sapB ← antimicrobial peptide transport ABC transporter permease
RA 1,370,026 T→A 7.4% intergenic (+23/‑190) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,370,029 T→A 7.4% intergenic (+26/‑187) pspE → / → ycjM thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein
RA 1,382,000 C→T 6.4% C18C (TGC→TGT ompG → outer membrane porin G
RA 1,382,003 A→G 6.3% A19A (GCA→GCG ompG → outer membrane porin G
RA 1,426,178 A→T 5.4% intergenic (+96/‑276) ydaY → / → tmpR pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein
RA 1,446,357:1 +T 5.3% intergenic (+151/+21) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,446,362 Δ1 bp 5.3% intergenic (+156/+16) ydbL → / ← feaR DUF1318 family protein/transcriptional activator for tynA and feaB
RA 1,504,884 T→C 5.2% intergenic (+19/+21) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,504,888 T→G 5.4% intergenic (+23/+17) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,504,889 C→A 5.3% intergenic (+24/+16) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,504,893 G→A 5.3% intergenic (+28/+12) insQ → / ← ydcO IS609 transposase B/BenE family inner membrane putative transporter
RA 1,597,272 T→A 8.0% pseudogene (716/3861 nt) yneO ← pseudogene, AidA homolog
RA 1,613,461 C→T 12.5% G415S (GGT→AGT)  sad ← succinate semialdehyde dehydrogenase, NAD(P)+‑dependent
RA 1,620,227 C→G 5.0% intergenic (+20/+11) marB → / ← eamA periplasmic mar operon regulator/cysteine and O‑acetyl‑L‑serine efflux system
RA 1,631,023 C→T 7.8% pseudogene (1263/1284 nt) ydfJ ← pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein
RA 1,642,370 C→G 6.9% intergenic (+303/+119) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,642,373 C→G 6.9% intergenic (+306/+116) cspF → / ← quuQ Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q
RA 1,679,398 T→A 6.6% intergenic (+27/‑159) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,679,400 G→C 7.8% intergenic (+29/‑157) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,679,402 T→A 6.5% intergenic (+31/‑155) ydgH → / → ydgI DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter
RA 1,684,016 A→G 10.0% S379G (AGC→GGC)  rstB → sensory histidine kinase of RstAB two‑component system
RA 1,684,019 C→T 9.9% R380W (CGG→TGG)  rstB → sensory histidine kinase of RstAB two‑component system
RA 1,685,527 A→G 100% G354G (GGT→GGC fumC ← fumarate hydratase (fumarase C),aerobic Class II
RA 1,689,817 C→A 5.1% intergenic (+66/‑35) manA → / → ydgA mannose‑6‑phosphate isomerase/DUF945 family protein
RA 1,698,585 T→G 6.5% E199A (GAA→GCA)  malI ← transcriptional repressor of Mal regulon
RA 1,698,587 T→A 6.7% A198A (GCA→GCT) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,698,589 C→A 6.8% A198S (GCA→TCA) ‡ malI ← transcriptional repressor of Mal regulon
RA 1,703,251 A→T 5.6% intergenic (+17/+17) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,703,252 A→T 5.6% intergenic (+18/+16) add → / ← ydgJ adenosine deaminase/putative oxidoreductase
RA 1,736,097 T→A 7.8% intergenic (+138/+24) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,736,100 T→A 7.8% intergenic (+141/+21) sodB → / ← ydhP superoxide dismutase, Fe/putative MFS transporter, inner membrane protein
RA 1,763,450 A→G 7.7% V187A (GTG→GCG) ‡ sufB ← component of SufBCD Fe‑S cluster assembly scaffold
RA 1,763,451 C→T 7.8% V187M (GTG→ATG) ‡ sufB ← component of SufBCD Fe‑S cluster assembly scaffold
RA 1,795,227 A→T 7.4% intergenic (‑75/+26) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,228 G→C 7.5% intergenic (‑76/+25) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,795,229 A→T 7.4% intergenic (‑77/+24) btuC ← / ← ihfA vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit
RA 1,797,388 G→T 6.9% P186Q (CCG→CAG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,797,391 A→C 6.9% L185R (CTG→CGG)  pheT ← phenylalanine tRNA synthetase, beta subunit
RA 1,810,062 T→C 7.4% intergenic (+14/‑149) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,065 T→G 8.2% intergenic (+17/‑146) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,066 C→A 7.8% intergenic (+18/‑145) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,810,069 G→A 7.8% intergenic (+21/‑142) yniC → / → ydjM 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA
RA 1,823,335 G→C 6.7% intergenic (+50/‑180) nadE → / → cho NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA 1,823,338 G→C 7.4% intergenic (+53/‑177) nadE → / → cho NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair
RA 1,836,905 G→C 5.6% S278T (AGC→ACC)  ynjB → putative ABC transporter periplasmic binding protein
RA 1,864,763 A→T 12.0% intergenic (+29/+19) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,864,768 T→C 11.1% intergenic (+34/+14) yeaD → / ← yeaE D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent
RA 1,865,682 G→C 8.2% intergenic (‑46/+44) yeaE ← / ← mipA aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery
RA 1,883,027 C→G 5.9% intergenic (+30/‑161) dmlA → / → yeaV D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter
RA 1,901,029 Δ1 bp 6.7% coding (557/1557 nt) yoaE ← putative membrane protein/conserved protein
RA 1,901,034 C→G 6.6% T184T (ACG→ACC yoaE ← putative membrane protein/conserved protein
RA 1,901,038:1 +T 6.9% coding (548/1557 nt) yoaE ← putative membrane protein/conserved protein
RA 1,954,256 T→A 7.2% I272N (ATT→AAT)  cmoB → tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent
MC JC 1,978,503 Δ776 bp 100% insB1insA insB1, insA
RA 1,985,112 C→G 8.3% intergenic (‑43/+27) araG ← / ← araF L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein
RA 1,986,356 A→T 5.6% intergenic (‑228/‑569) araF ← / → ftnB L‑arabinose ABC transporter periplasmic binding protein/ferritin B, putative ferrous iron reservoir
RA 2,009,731 A→G 7.6% intergenic (+19/‑90) yedF → / → yedK putative TusA family sulfurtransferase/DUF159 family protein
RA 2,009,732 C→G 7.7% intergenic (+20/‑89) yedF → / → yedK putative TusA family sulfurtransferase/DUF159 family protein
RA 2,009,733 C→T 7.7% intergenic (+21/‑88) yedF → / → yedK putative TusA family sulfurtransferase/DUF159 family protein
RA 2,079,004 G→C 9.8% intergenic (+73/+28) yoeF → / ← yeeX pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein
RA 2,081,688 A→T 6.0% I287N (ATT→AAT)  dacD ← D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b
RA 2,090,122 A→G 7.9% intergenic (+76/‑70) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,124 C→G 8.0% intergenic (+78/‑68) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,090,126 C→T 8.1% intergenic (+80/‑66) hisL → / → hisG his operon leader peptide/ATP phosphoribosyltransferase
RA 2,118,532 A→G 5.9% intergenic (‑128/+148) wcaK ← / ← wzxC colanic acid biosynthesis protein/putative colanic acid exporter
RA 2,118,533 A→C 5.1% intergenic (‑129/+147) wcaK ← / ← wzxC colanic acid biosynthesis protein/putative colanic acid exporter
RA 2,118,539 T→G 5.5% intergenic (‑135/+141) wcaK ← / ← wzxC colanic acid biosynthesis protein/putative colanic acid exporter
RA 2,118,540 C→A 5.5% intergenic (‑136/+140) wcaK ← / ← wzxC colanic acid biosynthesis protein/putative colanic acid exporter
RA 2,121,583 Δ1 bp 6.4% intergenic (‑29/+26) wcaJ ← / ← cpsG colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase
RA 2,121,586 G→C 6.3% intergenic (‑32/+23) wcaJ ← / ← cpsG colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase
RA 2,121,588:1 +C 6.7% intergenic (‑34/+21) wcaJ ← / ← cpsG colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase
RA 2,145,313 C→A 100% S683Y (TCC→TAC)  yegE → putative diguanylate cyclase
RA 2,173,361 Δ2 bp 100% pseudogene (1‑2/442 nt) gatC ← pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC
RA 2,177,332 C→T 6.5% intergenic (‑128/+180) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,337 G→T 5.3% intergenic (‑133/+175) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,340 A→C 6.2% intergenic (‑136/+172) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,177,345 A→G 6.4% intergenic (‑141/+167) gatY ← / ← fbaB D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I
RA 2,270,602 T→C 8.6% intergenic (+57/‑124) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,270,605 G→A 8.9% intergenic (+60/‑121) mepS → / → rtn murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
RA 2,282,832 C→G 7.1% intergenic (+31/+108) rplY → / ← yejK 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein
RA 2,286,311 C→G 6.1% intergenic (+24/+79) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,313 T→A 6.9% intergenic (+26/+77) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,286,315 C→G 6.8% intergenic (+28/+75) proL → / ← yejO tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system
RA 2,305,085 A→G 18.5% intergenic (+692/+23) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,086 C→G 18.5% intergenic (+693/+22) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,087 C→T 18.5% intergenic (+694/+21) eco → / ← mqo ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,305,209 G→A 19.1% L516L (CTG→TTG)  mqo ← malate dehydrogenase, FAD/NAD(P)‑binding domain
RA 2,311,616 C→T 9.2% intergenic (‑82/+30) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,311,619 A→G 8.4% intergenic (‑85/+27) apbE ← / ← ompC putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C
RA 2,314,800 A→C 8.0% Q438P (CAG→CCG) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,314,801 G→T 8.0% Q438H (CAG→CAT) ‡ rcsD → phosphotransfer intermediate protein in two‑component regulatory system with RcsBC
RA 2,318,095 C→G 100% L594F (TTG→TTC rcsC ← hybrid sensory kinase in two‑component regulatory system with RcsB and YojN
RA 2,329,708 A→G 5.5% G30G (GGT→GGC) ‡ yfaQ ← tandem DUF2300 domain protein, putative host defense protein
RA 2,329,709 C→G 5.5% G30A (GGT→GCT) ‡ yfaQ ← tandem DUF2300 domain protein, putative host defense protein
RA 2,329,710 C→T 5.4% G30S (GGT→AGT) ‡ yfaQ ← tandem DUF2300 domain protein, putative host defense protein
RA 2,375,483 A→T 6.9% L160L (CTT→CTA) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,375,484 A→T 6.9% L160H (CTT→CAT) ‡ menC ← O‑succinylbenzoyl‑CoA synthase
RA 2,391,414 C→G 12.5% R31P (CGA→CCA)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,391,417 C→G 12.8% W30S (TGG→TCG)  nuoN ← NADH:ubiquinone oxidoreductase, membrane subunit N
RA 2,415,725 C→A 5.2% L327M (CTG→ATG)  pta → phosphate acetyltransferase
RA 2,425,968 T→G 7.0% intergenic (‑52/+38) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,971 C→A 7.0% intergenic (‑55/+35) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,425,975 A→G 5.8% intergenic (‑59/+31) hisQ ← / ← hisJ histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein
RA 2,430,144 G→C 7.7% A32G (GCC→GGC)  purF ← amidophosphoribosyltransferase
RA 2,440,295 A→T 5.1% intergenic (‑175/+90) yfcJ ← / ← fabB putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,440,298 A→T 5.7% intergenic (‑178/+87) yfcJ ← / ← fabB putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,440,865 C→T 5.2% L247L (CTG→CTA) ‡ fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,440,866 A→G 5.2% L247P (CTG→CCG) ‡ fabB ← 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I
RA 2,493,562 T→A 8.2% intergenic (‑308/+205) frc ← / ← yfdX formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein
RA 2,493,563 T→A 8.2% intergenic (‑309/+204) frc ← / ← yfdX formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein
RA 2,497,023 A→T 6.3% intergenic (+31/+34) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,497,024 T→G 6.3% intergenic (+32/+33) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,497,025 C→A 6.3% intergenic (+33/+32) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,497,026 A→T 6.4% intergenic (+34/+31) ypdK → / ← alaC inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase
RA 2,518,082 C→G 9.3% noncoding (35/76 nt) alaX ← tRNA‑Ala
RA 2,518,197 C→G 7.9% noncoding (35/76 nt) alaW ← tRNA‑Ala
RA 2,525,907 G→A 9.3% intergenic (+16/+23) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,525,908 C→G 9.3% intergenic (+17/+22) yfeN → / ← yfeR putative outer membrane protein/transcriptional regulator of yefH
RA 2,532,268 T→C 8.1% intergenic (+44/‑141) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,532,272 T→A 8.5% intergenic (+48/‑137) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,532,275 T→A 8.3% intergenic (+51/‑134) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,532,279 G→A 7.7% intergenic (+55/‑130) cysZ → / → cysK sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit
RA 2,560,317 A→C 7.7% N21H (AAT→CAT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,321 C→T 7.8% A22V (GCT→GTT)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,326 A→G 8.3% T24A (ACA→GCA)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,560,330 G→T 7.3% C25F (TGC→TTC)  yffL → CPZ‑55 prophage; uncharacterized protein
RA 2,572,483 G→T 5.4% intergenic (‑33/+6) eutM ← / ← eutD ethanolamine utilization protein, putative carboxysome structural protein/phosphate acetyltransferase
RA 2,572,484 A→C 5.3% intergenic (‑34/+5) eutM ← / ← eutD ethanolamine utilization protein, putative carboxysome structural protein/phosphate acetyltransferase
RA 2,575,647 C→G 7.7% M53I (ATG→ATC eutS ← putative ethanol utilization carboxysome structural protein
RA 2,581,762 G→A 6.1% A339V (GCC→GTC)  ypfG ← DUF1176 family protein
RA 2,581,765 T→C 5.3% D338G (GAC→GGC)  ypfG ← DUF1176 family protein
RA 2,636,286 G→T 5.6% H357Q (CAC→CAA der ← GTPase; multicopy suppressor of ftsJ
RA 2,636,291 A→C 5.4% L356V (TTG→GTG)  der ← GTPase; multicopy suppressor of ftsJ
RA 2,637,433 C→T 5.9% intergenic (‑77/+41) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,438 T→G 6.5% intergenic (‑82/+36) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,439 C→A 5.7% intergenic (‑83/+35) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,637,444 A→G 5.8% intergenic (‑88/+30) der ← / ← bamB GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein
RA 2,640,666 A→C 6.6% intergenic (‑91/+20) hisS ← / ← ispG histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase
RA 2,640,667 G→C 6.7% intergenic (‑92/+19) hisS ← / ← ispG histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase
RA 2,640,668 G→T 7.0% intergenic (‑93/+18) hisS ← / ← ispG histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase
RA 2,652,131 G→T 5.6% P53T (CCG→ACG)  yfhM ← bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
RA 2,652,132 C→G 5.6% V52V (GTG→GTC) ‡ yfhM ← bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
RA 2,652,133 A→C 5.7% V52G (GTG→GGG) ‡ yfhM ← bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein
RA 2,653,104 G→C 7.5% W204S (TGG→TCG) ‡ sseA → 3‑mercaptopyruvate sulfurtransferase
RA 2,653,105 G→C 7.5% W204C (TGG→TGC) ‡ sseA → 3‑mercaptopyruvate sulfurtransferase
RA 2,653,367 G→A 11.2% intergenic (+28/‑488) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,653,372 T→C 12.8% intergenic (+33/‑483) sseA → / → ryfA 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown
RA 2,672,639 A→C 5.8% Q198P (CAG→CCG) ‡ hcaD → phenylpropionate dioxygenase, ferredoxin reductase subunit
RA 2,672,640 G→T 5.8% Q198H (CAG→CAT) ‡ hcaD → phenylpropionate dioxygenase, ferredoxin reductase subunit
RA 2,673,783 G→A 7.6% intergenic (+15/+33) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,784 C→A 7.3% intergenic (+16/+32) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,790 G→T 8.7% intergenic (+22/+26) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,791 A→C 8.9% intergenic (+23/+25) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,797 T→G 9.7% intergenic (+29/+19) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,673,798 T→C 8.6% intergenic (+30/+18) yphA → / ← yphB DoxX family inner membrane protein/mutarotase superfamily protein, YphB family
RA 2,684,192 A→G 5.7% intergenic (+136/+62) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,193 A→C 5.7% intergenic (+137/+61) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,199 T→G 5.8% intergenic (+143/+55) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,200 C→A 5.8% intergenic (+144/+54) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,206 G→T 5.9% intergenic (+150/+48) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,684,207 C→T 5.9% intergenic (+151/+47) yphH → / ← glyA putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase
RA 2,716,030 T→G 10.0% intergenic (+20/+36) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,716,033 C→A 8.6% intergenic (+23/+33) eamB → / ← grcA cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor
RA 2,724,095 C→A 9.7% intergenic (+13/‑33) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,724,097 T→A 8.7% intergenic (+15/‑31) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,724,099 T→G 8.6% intergenic (+17/‑29) pssA → / → yfiM phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein
RA 2,724,412 A→T 8.6% A95A (GCA→GCT yfiM → putative lipoprotein
RA 2,724,413 A→T 8.6% S96C (AGC→TGC)  yfiM → putative lipoprotein
RA 2,729,465 G→A 8.0% intergenic (‑21/+151) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,729,466 T→A 7.8% intergenic (‑22/+150) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,729,467 T→C 7.8% intergenic (‑23/+149) gltW ← / ← rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
RA 2,731,580 C→T 5.8% intergenic (‑423/+20) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,731,581 G→T 5.3% intergenic (‑424/+19) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,731,582 A→C 5.3% intergenic (‑425/+18) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,731,583 A→G 5.3% intergenic (‑426/+17) rrsG ← / ← clpB 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
RA 2,737,707 C→T 5.1% intergenic (+61/‑38) pheL → / → pheA pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein
RA 2,750,073 G→T 8.0% intergenic (+13/+42) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,078 T→G 9.9% intergenic (+18/+37) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,081 C→A 9.6% intergenic (+21/+34) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,750,086 A→C 7.4% intergenic (+26/+29) yfjD → / ← grpE UPF0053 family inner membrane protein/heat shock protein
RA 2,753,986 A→T 7.4% intergenic (+40/+22) bamE → / ← ratB lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein
RA 2,796,375 T→A 6.7% I138F (ATT→TTT)  ygaU ← uncharacterized protein
RA 2,800,515 C→A 10.1% intergenic (+40/‑208) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,517 T→A 10.1% intergenic (+42/‑206) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,800,519 T→G 10.2% intergenic (+44/‑204) ygaM → / → nrdH putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein
RA 2,801,056 A→T 5.7% N31I (AAT→ATT)  nrdI → NrdEF cluster assembly flavodoxin
RA 2,810,872 C→T 5.4% H35Y (CAC→TAC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,810,873 A→G 5.4% H35R (CAC→CGC) ‡ mprA → transcriptional repressor of microcin B17 synthesis and multidrug efflux
RA 2,814,860 A→G 7.0% noncoding (59/78 nt) micA → sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent
RA 2,814,861 C→T 6.7% noncoding (60/78 nt) micA → sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent
RA 2,817,977 A→T 8.1% intergenic (‑117/+82) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,817,978 A→T 8.8% intergenic (‑118/+81) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg
RA 2,860,736 C→G 5.4% D167H (GAT→CAT)  ygbI ← DeoR family putative transcriptional regulator
RA 2,860,738 A→T 5.5% I166N (ATT→AAT)  ygbI ← DeoR family putative transcriptional regulator
RA 2,860,740 C→G 5.7% M165I (ATG→ATC ygbI ← DeoR family putative transcriptional regulator
RA 2,866,487 G→C 9.7% intergenic (+22/+72) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,866,488 G→C 9.6% intergenic (+23/+71) ygbN → / ← rpoS putative transporter/RNA polymerase, sigma S (sigma 38) factor
RA 2,873,915 A→G 9.4% H26H (CAT→CAC) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,917 G→C 9.4% H26D (CAT→GAT) ‡ cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,873,919 C→T 9.7% G25D (GGT→GAT)  cysC ← adenosine 5'‑phosphosulfate kinase
RA 2,893,400 G→A 9.2% L248L (CTG→CTA ygcN → putative oxidoreductase
RA 2,900,322 C→T 5.4% intergenic (‑49/‑270) ygcW ← / → yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA 2,900,324 G→T 5.6% intergenic (‑51/‑268) ygcW ← / → yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA 2,900,327 A→C 6.1% intergenic (‑54/‑265) ygcW ← / → yqcE putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein
RA 2,971,146 T→C 5.4% intergenic (+13/‑125) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,154 G→A 5.0% intergenic (+21/‑117) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,971,159 G→A 5.2% intergenic (+26/‑112) ygdQ → / → ygdR UPF0053 family inner membrane protein/DUF903 family verified lipoprotein
RA 2,980,742 A→G 6.2% intergenic (‑107/+22) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,980,744 A→T 5.4% intergenic (‑109/+20) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,980,746 C→T 6.4% intergenic (‑111/+18) ygeA ← / ← araE Asp/Glu_racemase family protein/arabinose transporter
RA 2,987,103 C→T 5.5% intergenic (+27/‑433) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,104 T→A 5.5% intergenic (+28/‑432) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 2,987,105 A→G 5.3% intergenic (+29/‑431) yqeG → / → yqeH putative transporter/putative LuxR family transcriptional regulator
RA 3,020,510 G→T 8.0% intergenic (+21/‑30) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,511 C→G 8.1% intergenic (+22/‑29) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,020,512 A→C 8.4% intergenic (+23/‑28) ssnA → / → ygfM putative chlorohydrolase/aminohydrolase/putative oxidoreductase
RA 3,035,479 G→A 5.5% T268I (ACC→ATC) ‡ prfB ← peptide chain release factor RF‑2
RA 3,035,480 T→C 5.5% T268A (ACC→GCC) ‡ prfB ← peptide chain release factor RF‑2
RA 3,042,403 A→T 9.0% intergenic (+110/+86) ygfZ → / ← yqfA iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein
RA 3,042,404 A→C 9.0% intergenic (+111/+85) ygfZ → / ← yqfA iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein
RA 3,042,410 T→G 9.1% intergenic (+117/+79) ygfZ → / ← yqfA iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein
RA 3,042,411 C→A 8.9% intergenic (+118/+78) ygfZ → / ← yqfA iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein
RA 3,057,140 A→G 7.7% intergenic (+152/+38) sibC → / ← serA sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,057,145 G→C 8.3% intergenic (+157/+33) sibC → / ← serA sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,057,150 C→T 8.5% intergenic (+162/+28) sibC → / ← serA sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase
RA 3,059,703 A→T 5.0% intergenic (‑2/‑50) yqfE ← / → argP pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA 3,059,704 A→T 5.0% intergenic (‑3/‑49) yqfE ← / → argP pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor
RA 3,061,036 C→A 6.2% P63T (CCG→ACG)  scpA → methylmalonyl‑CoA mutase
RA 3,061,041 T→G 6.7% R64R (CGT→CGG scpA → methylmalonyl‑CoA mutase
RA 3,061,817 G→C 9.5% W323S (TGG→TCG) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,061,818 G→C 9.5% W323C (TGG→TGC) ‡ scpA → methylmalonyl‑CoA mutase
RA 3,079,615 C→T 5.2% intergenic (‑285/+29) cmtB ← / ← tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
RA 3,090,226 T→C 5.2% C158R (TGC→CGC)  yggI → Zn‑dependent metalloprotease‑related protein
RA 3,090,229 G→A 6.1% G159S (GGT→AGT)  yggI → Zn‑dependent metalloprotease‑related protein
RA 3,098,515 G→C 7.6% intergenic (+112/+43) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,518 C→T 7.6% intergenic (+115/+40) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,519 A→G 7.5% intergenic (+116/+39) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,098,522 G→C 7.7% intergenic (+119/+36) yggW → / ← yggM HemN family putative oxidoreductase/DUF1202 family putative secreted protein
RA 3,156,590 C→A 7.5% intergenic (+72/‑33) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,156,591 T→G 7.4% intergenic (+73/‑32) yqhD → / → dkgA aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A
RA 3,180,505 G→T 7.1% E29* (GAG→TAG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,180,506 A→C 7.2% E29A (GAG→GCG) ‡ ygiC → ATP‑Grasp family ATPase
RA 3,183,345:1 +T 9.4% intergenic (+22/+468) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,183,350 Δ1 bp 9.2% intergenic (+27/+463) zupT → / ← ribB zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
RA 3,234,508 T→C 5.1% intergenic (‑53/+231) higB ← / ← rlmG mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent
RA 3,239,609 T→G 7.9% intergenic (+64/‑335) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,610 C→G 7.7% intergenic (+65/‑334) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,239,611 C→A 7.7% intergenic (+66/‑333) alx → / → sstT putative membrane‑bound redox modulator/sodium:serine/threonine symporter
RA 3,256,434 A→G 6.5% M73T (ATG→ACG)  yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,441 T→G 8.2% T71P (ACG→CCG)  yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,442 G→C 7.5% G70G (GGC→GGG) ‡ yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,443 C→A 8.2% G70V (GGC→GTC) ‡ yhaM ← putative L‑serine dehydratase alpha chain
RA 3,256,450 C→T 7.1% V68I (GTT→ATT)  yhaM ← putative L‑serine dehydratase alpha chain
RA 3,276,890 G→A 5.2% intergenic (+37/‑112) garD → / → prlF D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system
RA 3,282,927 A→G 5.7% I318V (ATC→GTC) ‡ agaS → tagatose‑6‑phosphate ketose/aldose isomerase
RA 3,282,928 T→A 5.7% I318N (ATC→AAC) ‡ agaS → tagatose‑6‑phosphate ketose/aldose isomerase
RA 3,282,929 C→T 5.7% I318I (ATC→ATT) ‡ agaS → tagatose‑6‑phosphate ketose/aldose isomerase
RA 3,288,032 C→A 6.5% intergenic (+22/‑58) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,288,033 T→G 6.7% intergenic (+23/‑57) yraH → / → yraI putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone
RA 3,309,004 C→T 5.5% intergenic (‑80/+29) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,009 C→T 5.4% intergenic (‑85/+24) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,309,012 A→G 6.3% intergenic (‑88/+21) nlpI ← / ← pnp lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase
RA 3,313,207 G→A 6.9% intergenic (‑29/+135) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,208 T→A 6.7% intergenic (‑30/+134) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,313,209 T→C 6.7% intergenic (‑31/+133) rbfA ← / ← infB 30s ribosome binding factor/translation initiation factor IF‑2
RA 3,324,952 A→G 5.8% intergenic (‑41/+49) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,955 A→G 5.6% intergenic (‑44/+46) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,956 C→T 5.5% intergenic (‑45/+45) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,324,959 C→T 5.9% intergenic (‑48/+42) folP ← / ← ftsH 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo
RA 3,328,182 A→T 7.7% intergenic (+99/+57) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,183 T→A 7.7% intergenic (+100/+56) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,328,184 A→T 7.8% intergenic (+101/+55) yhbY → / ← greA RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor
RA 3,331,979 T→C 8.2% T253A (ACG→GCG)  yhbE ← EamA family inner membrane putative transporter
RA 3,331,983 G→C 8.2% I251M (ATC→ATG yhbE ← EamA family inner membrane putative transporter
RA 3,331,987 G→A 8.6% A250V (GCG→GTG)  yhbE ← EamA family inner membrane putative transporter
RA 3,332,822 G→A 11.9% intergenic (‑87/+40) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,332,823 T→C 11.9% intergenic (‑88/+39) yhbE ← / ← rpmA EamA family inner membrane putative transporter/50S ribosomal subunit protein L27
RA 3,333,050 T→A 5.6% K24* (AAG→TAG)  rpmA ← 50S ribosomal subunit protein L27
RA 3,333,057 C→T 9.6% L21L (CTG→CTA) ‡ rpmA ← 50S ribosomal subunit protein L27
RA 3,333,058 A→G 8.2% L21P (CTG→CCG) ‡ rpmA ← 50S ribosomal subunit protein L27
RA 3,334,703 A→G 10.8% intergenic (+22/‑206) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,704 G→C 11.0% intergenic (+23/‑205) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,334,705 C→T 11.8% intergenic (+24/‑204) ispB → / → sfsB octaprenyl diphosphate synthase/malPQ operon transcriptional activator
RA 3,339,813 T→C 7.8% K85E (AAA→GAA)  mlaF ← ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
RA 3,339,818 Δ1 bp 6.7% coding (248/810 nt) mlaF ← ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
RA 3,339,828:1 +T 8.0% coding (238/810 nt) mlaF ← ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
RA 3,339,833 G→A 5.3% S78L (TCG→TTG)  mlaF ← ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein
RA 3,354,537 C→G 8.9% intergenic (‑487/‑188) yhcC ← / → gltB putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit
RA 3,360,643 T→A 11.0% intergenic (+27/‑533) gltD → / → gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA 3,360,644 G→C 11.2% intergenic (+28/‑532) gltD → / → gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA 3,360,645 T→A 11.0% intergenic (+29/‑531) gltD → / → gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
RA 3,368,982 G→C 5.6% intergenic (+28/+32) yhcG → / ← yhcH DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily
RA 3,418,628 G→A 5.5% intergenic (+17/‑414) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,418,629 T→C 5.6% intergenic (+18/‑413) yhdV → / → yhdW putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily
RA 3,439,588 G→C 7.6% intergenic (‑79/+28) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,439,589 G→C 7.5% intergenic (‑80/+27) yhdN ← / ← rplQ DUF1992 family protein/50S ribosomal subunit protein L17
RA 3,453,174 C→T 5.2% G33S (GGT→AGT)  rpsJ ← 30S ribosomal subunit protein S10
RA 3,453,175 A→G 5.2% T32T (ACT→ACC rpsJ ← 30S ribosomal subunit protein S10
RA 3,458,416 T→A 5.4% I26I (ATT→ATA gspE → general secretory pathway component, cryptic
RA 3,458,418 T→A 5.5% I27N (ATT→AAT)  gspE → general secretory pathway component, cryptic
RA 3,458,420 T→A 5.4% Y28N (TAT→AAT)  gspE → general secretory pathway component, cryptic
RA 3,471,361 T→G 5.3% intergenic (‑32/+39) tufA ← / ← fusA translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding
RA 3,476,585 G→A 7.5% intergenic (‑145/+22) yheO ← / ← fkpA putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 3,476,586 T→C 7.8% intergenic (‑146/+21) yheO ← / ← fkpA putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase)
RA 3,477,878 T→A 6.6% intergenic (+20/+29) slyX → / ← slyD phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase)
RA 3,480,662 T→A 5.7% H167L (CAC→CTC)  kefG ← potassium‑efflux system ancillary protein for KefB, glutathione‑regulated
RA 3,480,664 G→C 5.6% S166R (AGC→AGG) ‡ kefG ← potassium‑efflux system ancillary protein for KefB, glutathione‑regulated
RA 3,480,666 T→A 5.6% S166C (AGC→TGC) ‡ kefG ← potassium‑efflux system ancillary protein for KefB, glutathione‑regulated
RA 3,486,771 T→C 5.8% intergenic (+19/‑20) crp → / → yhfK cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein
RA 3,486,776 T→A 7.1% intergenic (+24/‑15) crp → / → yhfK cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein
RA 3,504,875 T→G 5.7% intergenic (+92/+60) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,504,880 A→T 7.6% intergenic (+97/+55) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,504,881 A→T 7.7% intergenic (+98/+54) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,504,882 A→T 7.7% intergenic (+99/+53) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,504,887 C→A 7.5% intergenic (+104/+48) frlR → / ← yhfS putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
RA 3,560,455:1 +G 100% intergenic (‑2/+1) glpR ← / ← glpR pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon
RA 3,563,539 T→C 6.9% intergenic (+21/+248) glpD → / ← yzgL sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology
RA 3,563,546 T→G 7.5% intergenic (+28/+241) glpD → / ← yzgL sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology
RA 3,563,547 C→A 7.5% intergenic (+29/+240) glpD → / ← yzgL sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology
RA 3,577,657 A→G 5.2% intergenic (‑65/+74) gntK ← / ← gntR gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA 3,577,660 C→T 5.2% intergenic (‑68/+71) gntK ← / ← gntR gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor
RA 3,648,273 C→G 7.2% intergenic (+127/‑21) agrA → / → agrB inactive antisense sRNA/antisense sRNA antitoxin for the DinQ toxin
RA 3,657,599 T→A 12.4% intergenic (+32/+387) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,601 G→C 12.0% intergenic (+34/+385) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,657,603 T→A 13.1% intergenic (+36/+383) hdeD → / ← arrS acid‑resistance membrane protein/antisense sRNA ArrS, function unknown
RA 3,676,271 A→T 6.3% intergenic (+163/+19) yhjE → / ← yhjG putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein
RA 3,693,752 A→T 5.1% I495I (ATT→ATA bcsA ← cellulose synthase, catalytic subunit
RA 3,693,755 A→T 5.2% R494R (CGT→CGA bcsA ← cellulose synthase, catalytic subunit
RA 3,697,969 C→G 5.5% H504Q (CAC→CAG bcsE → cellulose production protein
RA 3,702,835 G→A 5.3% L12L (CTG→TTG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,702,837 G→C 5.5% P11R (CCG→CGG)  dppF ← dipeptide/heme ABC transporter ATPas
RA 3,702,839 T→C 5.8% Q10Q (CAA→CAG dppF ← dipeptide/heme ABC transporter ATPas
RA 3,708,595 G→A 5.6% intergenic (‑890/+21) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,596 T→A 5.5% intergenic (‑891/+20) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,708,597 T→C 5.5% intergenic (‑892/+19) dppA ← / ← proK dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
RA 3,714,163:1 +T 7.2% coding (2232/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,714,168 Δ1 bp 6.7% coding (2227/2334 nt) bisC ← biotin sulfoxide reductase
RA 3,720,300 T→A 5.1% intergenic (+39/+148) cspA → / ← hokA RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small
RA 3,722,300 G→T 5.2% intergenic (+195/+28) sokA → / ← glyS pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA 3,722,301 A→C 5.2% intergenic (+196/+27) sokA → / ← glyS pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit
RA 3,774,207 C→T 6.5% intergenic (+13/‑217) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,214 C→T 6.6% intergenic (+20/‑210) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,215 A→G 6.7% intergenic (+21/‑209) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,774,222 A→G 6.8% intergenic (+28/‑202) mtlA → / → mtlD mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent
RA 3,781,051 C→G 8.7% intergenic (+34/‑164) lldD → / → trmL L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
RA 3,790,300 A→T 7.1% intergenic (‑219/+20) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,790,303 A→T 7.1% intergenic (‑222/+17) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
RA 3,814,164 G→A 5.2% G78D (GGT→GAT)  dut → deoxyuridinetriphosphatase
RA 3,832,797 T→G 5.0% N581H (AAC→CAC)  yicI ← putative alpha‑glucosidase
RA 3,832,800 C→A 5.0% A580S (GCG→TCG)  yicI ← putative alpha‑glucosidase
RA 3,878,894 T→A 5.2% D409V (GAC→GTC)  gyrB ← DNA gyrase, subunit B
RA 3,891,502 C→G 5.7% intergenic (+19/‑113) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,504 T→A 5.5% intergenic (+21/‑111) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,891,506 C→G 5.6% intergenic (+23/‑109) tnaB → / → mdtL tryptophan transporter of low affinity/multidrug efflux system protein
RA 3,947,332 A→T 5.9% A212A (GCT→GCA hdfR ← flhDC operon transcriptional repressor
RA 3,947,335 A→T 5.9% S211S (TCT→TCA hdfR ← flhDC operon transcriptional repressor
RA 3,959,515 T→A 11.5% intergenic (+70/+17) ilvC → / ← ppiC ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C)
RA 3,963,415 A→C 6.9% L272R (CTG→CGG) ‡ gpp ← guanosine pentaphosphatase/exopolyphosphatase
RA 3,963,416 G→T 7.0% L272M (CTG→ATG) ‡ gpp ← guanosine pentaphosphatase/exopolyphosphatase
RA 3,970,813 Δ1 bp 5.7% coding (681/1131 nt) wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase
RA 3,970,817:1 +G 5.7% coding (685/1131 nt) wecB → UDP‑N‑acetyl glucosamine‑2‑epimerase
RA 3,972,673 A→C 5.5% E51A (GAG→GCG) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,972,674 G→T 5.0% E51D (GAG→GAT) ‡ rffG → dTDP‑glucose 4,6‑dehydratase
RA 3,981,102 T→A 7.3% V72V (GTT→GTA yifK → putative APC family amino acid transporter
RA 3,991,334 T→A 5.1% I61N (ATT→AAT)  cyaA → adenylate cyclase
RA 3,991,459 A→G 8.4% S103G (AGC→GGC)  cyaA → adenylate cyclase
RA 3,991,844 A→T 81.8% D231V (GAT→GTT)  cyaA → adenylate cyclase
RA 4,000,230 A→G 5.8% intergenic (+85/+62) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,000,231 G→C 6.1% intergenic (+86/+61) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,000,237 T→A 5.9% intergenic (+92/+55) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,000,238 T→A 5.9% intergenic (+93/+54) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,000,244 G→C 6.2% intergenic (+99/+48) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,000,245 C→T 6.2% intergenic (+100/+47) uvrD → / ← yigE DNA‑dependent ATPase I and helicase II/DUF2233 family protein
RA 4,015,333 A→T 5.6% intergenic (+19/+21) metE → / ← ysgA 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase
RA 4,056,038 T→G 6.4% D101A (GAC→GCC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,056,039 C→A 6.4% D101Y (GAC→TAC) ‡ glnL ← sensory histidine kinase in two‑component regulatory system with GlnG
RA 4,060,261 G→T 12.1% intergenic (+31/‑186) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,060,264 A→C 11.2% intergenic (+34/‑183) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator
RA 4,080,006 T→C 5.6% intergenic (+37/+293) yiiF → / ← fdhE putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein
RA 4,080,009 G→A 5.8% intergenic (+40/+290) yiiF → / ← fdhE putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein
RA 4,082,696 G→C 9.3% Q22E (CAG→GAG)  fdoH ← formate dehydrogenase‑O, Fe‑S subunit
RA 4,106,369 T→G 5.9% intergenic (+49/‑100) cpxP → / → fieF inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter
RA 4,106,370 G→C 5.8% intergenic (+50/‑99) cpxP → / → fieF inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter
RA 4,106,371 C→A 6.3% intergenic (+51/‑98) cpxP → / → fieF inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter
RA 4,116,937 T→G 78.0% K96Q (AAG→CAG)  glpK ← glycerol kinase
RA 4,117,050 C→T 10.9% S58N (AGC→AAC)  glpK ← glycerol kinase
RA 4,117,168 C→T 5.2% A19T (GCG→ACG)  glpK ← glycerol kinase
RA 4,168,349 A→G 9.5% intergenic (+149/‑23) rrsB → / → gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA 4,168,350 A→T 9.5% intergenic (+150/‑22) rrsB → / → gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA 4,168,351 C→T 9.2% intergenic (+151/‑21) rrsB → / → gltT 16S ribosomal RNA of rrnB operon/tRNA‑Glu
RA 4,227,550 G→A 6.5% intergenic (+39/‑181) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,227,555 A→T 6.4% intergenic (+44/‑176) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,227,560 T→C 6.4% intergenic (+49/‑171) metH → / → yjbB homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter
RA 4,235,579 G→A 7.3% intergenic (+172/‑327) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA 4,235,581 T→A 7.4% intergenic (+174/‑325) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA 4,235,583 T→C 7.3% intergenic (+176/‑323) pgi → / → yjbE glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein
RA 4,261,358 T→A 5.9% intergenic (+52/‑311) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,261,359 T→A 5.9% intergenic (+53/‑310) yjbM → / → dusA uncharacterized protein/tRNA‑dihydrouridine synthase A
RA 4,262,250 G→C 6.3% G194G (GGG→GGC dusA → tRNA‑dihydrouridine synthase A
RA 4,262,255 G→C 6.4% S196T (AGC→ACC)  dusA → tRNA‑dihydrouridine synthase A
RA 4,270,142 G→A 5.7% intergenic (+15/‑96) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,270,144 G→C 5.7% intergenic (+17/‑94) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,270,146 T→C 5.9% intergenic (+19/‑92) aphA → / → yjbQ acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase
RA 4,273,361 T→A 8.6% S171C (AGC→TGC)  uvrA ← ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
RA 4,273,362 T→A 8.6% A170A (GCA→GCT uvrA ← ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
RA 4,295,809:1 +T 7.0% intergenic (+15/+627) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,295,817 Δ1 bp 7.1% intergenic (+23/+619) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,060 C→T 19.3% intergenic (+266/+376) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,296,380:1 +CG 100% intergenic (+586/+56) gltP → / ← yjcO glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
RA 4,307,294 A→T 12.2% L169Q (CTG→CAG)  alsK ← D‑allose kinase
RA 4,307,298 G→A 12.7% P168S (CCC→TCC)  alsK ← D‑allose kinase
RA 4,314,233 A→T 5.2% intergenic (+36/+111) yjdP → / ← phnP putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA 4,315,437 A→T 5.3% F34L (TTT→TTA) ‡ phnO ← aminoalkylphosphonate N‑acetyltransferase
RA 4,315,438 A→T 5.3% F34Y (TTT→TAT) ‡ phnO ← aminoalkylphosphonate N‑acetyltransferase
RA 4,315,439 A→T 5.2% F34I (TTT→ATT) ‡ phnO ← aminoalkylphosphonate N‑acetyltransferase
RA 4,335,654 T→A 6.0% intergenic (‑64/+40) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,335,655 T→A 6.1% intergenic (‑65/+39) eptA ← / ← adiC lipid A phosphoethanolamine transferase/arginine:agmatine antiporter
RA 4,339,802 A→G 5.2% A240A (GCT→GCC adiA ← arginine decarboxylase
RA 4,347,285 C→G 5.3% M14I (ATG→ATC fumB ← anaerobic class I fumarate hydratase (fumarase B)
RA 4,353,171 C→G 5.5% intergenic (+90/+29) ghoT → / ← lysU toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA 4,353,173 T→C 5.3% intergenic (+92/+27) ghoT → / ← lysU toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible
RA 4,356,445 A→T 9.4% intergenic (‑34/+25) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,356,446 A→T 9.4% intergenic (‑35/+24) dtpC ← / ← cadA dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible
RA 4,362,528 G→A 6.6% intergenic (‑175/+23) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,362,529 T→C 6.8% intergenic (‑176/+22) yjdQ ← / ← pheU pseudogene, P4‑like integrase remnant/tRNA‑Phe
RA 4,366,854 T→G 7.5% intergenic (‑81/+37) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,366,855 C→A 7.6% intergenic (‑82/+36) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,371,931 G→T 6.9% E303* (GAA→TAA) ‡ groL → Cpn60 chaperonin GroEL, large subunit of GroESL
RA 4,371,932 A→C 7.3% E303A (GAA→GCA) ‡ groL → Cpn60 chaperonin GroEL, large subunit of GroESL
RA 4,376,280 G→A 5.8% intergenic (+15/‑37) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,376,291 T→C 7.1% intergenic (+26/‑26) efp → / → ecnA polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B
RA 4,378,976 A→T 5.1% intergenic (‑32/+31) ampC ← / ← frdD penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit
RA 4,381,389 G→T 5.0% G310G (GGC→GGA frdA ← anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit
RA 4,381,396 G→C 5.7% P308R (CCG→CGG)  frdA ← anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit
RA 4,392,617 C→G 10.6% noncoding (35/76 nt) glyY → tRNA‑Gly
RA 4,398,580 G→A 11.5% W390* (TGG→TAG)  mutL → methyl‑directed mismatch repair protein
RA 4,410,034 G→A 5.4% intergenic (+28/‑99) rlmB → / → yjfI 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein
RA 4,418,263 G→C 5.6% P64R (CCG→CGG) ‡ ulaR ← transcriptional repressor for the L‑ascorbate utilization divergent operon
RA 4,418,264 G→C 5.4% P64A (CCG→GCG) ‡ ulaR ← transcriptional repressor for the L‑ascorbate utilization divergent operon
RA 4,422,895 C→G 7.3% A17G (GCC→GGC)  ulaE → L‑xylulose 5‑phosphate 3‑epimerase
RA 4,422,903 T→C 6.5% C20R (TGC→CGC)  ulaE → L‑xylulose 5‑phosphate 3‑epimerase
RA 4,470,951 A→C 9.2% intergenic (‑38/+35) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,952 T→C 9.4% intergenic (‑39/+34) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,957 G→A 9.2% intergenic (‑44/+29) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,470,958 G→T 9.9% intergenic (‑45/+28) ridA ← / ← pyrI enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit
RA 4,472,434 G→A 5.5% R34* (CGA→TGA)  pyrL ← pyrBI operon leader peptide
RA 4,472,437 T→C 5.7% N33D (AAT→GAT)  pyrL ← pyrBI operon leader peptide
RA 4,479,012 A→T 7.4% intergenic (+123/+22) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,016 G→C 7.6% intergenic (+127/+18) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,479,020 A→T 7.7% intergenic (+131/+14) rraB → / ← yjgM protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase
RA 4,496,511 A→G 6.8% intergenic (+22/‑164) leuX → / → intB tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA 4,496,512 C→T 6.7% intergenic (+23/‑163) leuX → / → intB tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase
RA 4,514,335 A→T 5.1% intergenic (‑27/+18) fecB ← / ← fecA ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
RA 4,514,336 A→T 5.6% intergenic (‑28/+17) fecB ← / ← fecA ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein
RA 4,520,500 Δ1 bp 11.2% intergenic (‑176/+171) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,520,504:1 +T 10.7% intergenic (‑180/+167) yjhU ← / ← yjhF putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter
RA 4,532,534 G→C 6.4% A217G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,532,537 G→C 6.4% A216G (GCC→GGC)  yjhP ← putative methyltransferase
RA 4,638,690 C→T 8.2% G171G (GGC→GGT creD → inner membrane protein
RA 4,638,691 A→G 9.1% T172A (ACC→GCC)  creD → inner membrane protein

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423751–3424234 3424546–3424238 5–796 53 [50] [49] 52 [rrfD]–[rrlD] [rrfD],[rrlD]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 193444 =81 (0.690)4 (0.040) 4/240 NT 5.1% intergenic (+15/‑77) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
?NC_000913 193489 = 73 (0.680)intergenic (+60/‑32) frr/dxr ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
* ? NC_000913 265229 =111 (0.950)6 (0.050) 5/244 NT 5.4% intergenic (‑23/+75) yafX/ykfF CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
?NC_000913 265252 = 105 (0.960)intergenic (‑46/+52) yafX/ykfF CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein
* ? NC_000913 274674 =NA (NA)6 (0.050) 5/250 NT NA noncoding (476/1195 nt) IS5 repeat region
?NC_000913 274711 = NA (NA)noncoding (439/1195 nt) IS5 repeat region
* ? NC_000913 = 28469168 (0.580)4 (0.040) 4/252 NT 5.7% coding (1491/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
?NC_000913 = 284723 67 (0.590)coding (1523/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
* ? NC_000913 497914 =NA (NA)4 (0.040) 4/248 NT NA intergenic (+95/‑141) adk/hemH adenylate kinase/ferrochelatase
?NC_000913 497936 = NA (NA)intergenic (+117/‑119) adk/hemH adenylate kinase/ferrochelatase
* ? NC_000913 = 70917187 (0.750)7 (0.060) 5/246 NT 7.6% coding (838/1407 nt) chiP chitoporin, uptake of chitosugars
?NC_000913 = 709178 87 (0.790)coding (845/1407 nt) chiP chitoporin, uptake of chitosugars
* ? NC_000913 765068 =79 (0.680)4 (0.040) 3/248 NT 5.4% intergenic (+19/+85) sucD/mngR succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon
?NC_000913 765107 = 66 (0.590)intergenic (+58/+46) sucD/mngR succinyl‑CoA synthetase, NAD(P)‑binding, alpha subunit/transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon
* ? NC_000913 1207790 =38 (0.330)61 (0.600) 49/228 NT 62.8% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 39 (0.380)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 = 120780540 (0.340)61 (0.600) 49/228 NT 62.2% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 = 1209602 39 (0.380)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? NC_000913 1286928 =67 (0.570)4 (0.040) 4/250 NT 5.2% intergenic (+402/+138) narI/rttR nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript
?NC_000913 1287082 = 80 (0.710)noncoding (155/171 nt) rttR rtT sRNA, processed from tyrT transcript
* ? NC_000913 1396531 =NA (NA)4 (0.040) 4/248 NT NA noncoding (488/1195 nt) IS5 repeat region
?NC_000913 = 1428264 NA (NA)noncoding (531/1196 nt) IS5 repeat region
* ? NC_000913 = 181529189 (0.760)6 (0.050) 6/246 NT 7.0% coding (1425/2262 nt) katE catalase HPII, heme d‑containing
?NC_000913 = 1815302 76 (0.690)coding (1436/2262 nt) katE catalase HPII, heme d‑containing
* ? NC_000913 1886815 =63 (0.540)4 (0.040) 5/238 NT 7.1% intergenic (+5/+49) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
?NC_000913 1886858 = 47 (0.440)intergenic (+48/+6) yeaX/rnd putative YeaWX dioxygenase beta subunit, reductase component/ribonuclease D
* ? NC_000913 = 2290113NA (NA)8 (0.070) 8/258 NT 6.8% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 3992708 109 (0.940)coding (1556/2547 nt) cyaA adenylate cyclase
* ? NC_000913 = 264434689 (0.760)5 (0.040) 4/248 NT 5.9% intergenic (‑63/+87) rlmN/ndk dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase
?NC_000913 = 2644366 74 (0.670)intergenic (‑83/+67) rlmN/ndk dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent/multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'‑phosphodiesterase
* ? NC_000913 2726200 =NA (NA)39 (0.350) 15/248 NT NA intergenic (‑12/+81) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
?NC_000913 2726224 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon
* ? NC_000913 3423376 =83 (0.710)17 (0.150) 8/256 NT 17.2% intergenic (+182/+47) yhdZ/rrfF putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon
?NC_000913 = 4213162 NA (NA)intergenic (+3/‑72) rrfE/yjaA 5S ribosomal RNA of rrnE operon/stress‑induced protein
* ? NC_000913 = 3620220NA (NA)3 (0.030) 3/248 NT 100% coding (1029/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620255 0 (0.000)coding (1064/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
* ? NC_000913 3721045 =130 (1.110)374 (3.230) 181/258 NT 75.1% noncoding (413/1443 nt) IS150 repeat region
?NC_000913 = 3839774 119 (1.030)coding (220/819 nt) nlpA cytoplasmic membrane lipoprotein‑28
* ? NC_000913 = 3962703NA (NA)7 (0.060) 7/248 NT NA noncoding (4/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 3962735 NA (NA)noncoding (36/36 nt) REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences REP286 (repetitive extragenic palindromic) element; contains 1 REP sequences
* ? NC_000913 4272636 =99 (0.850)7 (0.060) 7/250 NT 6.4% coding (1236/2823 nt) uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
?NC_000913 4272663 = 108 (0.960)coding (1209/2823 nt) uvrA ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
* ? NC_000913 4295974 =83 (0.710)7 (0.060) 4/246 NT 8.2% noncoding (140/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
?NC_000913 4296068 = NA (NA)noncoding (234/600 nt) RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites
* ? NC_000913 4369146 =72 (0.620)4 (0.040) 4/240 NT 5.7% intergenic (+6/+10) fxsA/yjeH suppressor of F exclusion of phage T7/putative transporter
?NC_000913 4369185 = 65 (0.600)coding (1228/1257 nt) yjeH putative transporter
* ? NC_000913 = 454269092 (0.790)6 (0.060) 6/242 NT 6.4% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 = 4542986 89 (0.820)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)