mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 3,702 | A→G | D301G (GAT→GGT) | thrB → | homoserine kinase |
| RA | 23,401 | C→T | G337G (GGC→GGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 68,807 | A→G | I414I (ATT→ATC) | araB ← | ribulokinase |
| RA | 130,461 | A→G | V267A (GTT→GCT) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 206,738 | T→C | V538A (GTC→GCC) | dnaE → | DNA polymerase III subunit alpha |
| RA | 220,922 | A→G | F3L (TTC→CTC) | metQ ← | L‑methionine/D‑methionine ABC transporter membrane anchored binding protein |
| RA | 248,447 | C→T | pseudogene (1624/1713 nt) | lfhA ← | flagellar system protein, promoterless fragment |
| RA | 255,174 | (C)6→5 | coding (543/1458 nt) | pepD ← | peptidase D |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 294,762 | A→G | V13A (GTT→GCT) | yagM ← | CP4‑6 prophage; protein YagM |
| RA | 308,594 | T→C | T247A (ACC→GCC) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 361,682 | Δ1 bp | coding (179/612 nt) | lacA ← | galactoside O‑acetyltransferase |
| RA | 368,127 | G→A | G98G (GGC→GGT) | mhpR ← | DNA‑binding transcriptional activator MhpR |
| RA | 371,589 | C→T | G117G (GGC→GGT) | mhpC → | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase |
| RA | 378,843 | T→G | K243N (AAA→AAC) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 432,361 | T→A | D164V (GAT→GTT) | yajI ← | putative lipoprotein YajI |
| RA | 483,549 | C→T | P285P (CCG→CCA) | acrB ← | multidrug efflux pump RND permease AcrB |
| RA | 486,866 | G→A | A111T (GCA→ACA) | mscK → | potassium dependent, small conductance mechanosensitive channel |
| RA | 489,541 | T→G | R1002R (CGT→CGG) | mscK → | potassium dependent, small conductance mechanosensitive channel |
| RA | 527,577 | T→C | intergenic (+36/‑4) | rhsD → / → ybbC | protein RhsD/PF15631 family protein YbbC |
| RA | 541,743 | A→G | L393L (TTA→TTG) | ybbY → | putative purine transporter |
| RA | 556,630 | A→G | intergenic (‑77/+31) | ybcI ← / ← ybcJ | conserved inner membrane protein YbcI/putative RNA‑binding protein YbcJ |
| RA | 616,577 | T→A | I807I (ATT→ATA) | entF → | apo‑serine activating enzyme |
| RA | 652,969 | C→T | T245T (ACC→ACT) | dpiB → | sensory histidine kinase DpiB |
| RA | 717,029 | A→G | Y413H (TAC→CAC) | potE ← | putrescine:H(+) symporter/putrescine:ornithine antiporter PotE |
| RA | 721,372 | G→A | A121V (GCC→GTC) | kdpE ← | DNA‑binding transcriptional activator KdpE |
| RA | 735,498 | C→A | pseudogene (1279/1434 nt) | ybfO → | conserved protein, rhs‑like YbfO |
| RA | 793,514 | C→G | G92A (GGC→GCC) | modF ← | ABC family protein ModF |
| RA | 795,370 | (A)6→7 | coding (282/774 nt) | modA → | molybdate ABC transporter periplasmic binding protein |
| RA | 799,720 | (A)6→5 | coding (856/954 nt) | ybhD ← | putative DNA‑binding transcriptional regulator YbhD |
| RA | 803,263 | G→A | V459V (GTG→GTA) | ybhI → | putative tricarboxylate transporter |
| RA | 868,422 | (C)8→7 | coding (903/1872 nt) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 877,845 | A→G | L64P (CTG→CCG) | rimO ← | ribosomal protein S12 methylthiotransferase RimO |
| RA | 879,011 | A→G | L90L (TTA→TTG) | yliI → | aldose sugar dehydrogenase YliI |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 925,362 | G→A | G700D (GGC→GAC) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 952,513 | T→C | T348A (ACC→GCC) | pflB ← | pyruvate formate‑lyase |
| RA | 998,063 | A→G | T66A (ACC→GCC) | elfA → | putative laminin‑binding fimbrial subunit |
| RA | 1,004,160 | (G)7→6 | coding (214/711 nt) | ycbF → | putative fimbrial chaperone YcbF |
| RA | 1,010,898 | C→T | A312V (GCC→GTC) | uup → | ATP‑binding protein with possible role in replication |
| RA | 1,012,009 | A→G | E3E (GAA→GAG) | pqiA → | intermembrane transport protein PqiA |
| RA | 1,018,281 | C→T | A7T (GCA→ACA) | ycbZ ← | putative ATP‑dependent protease YcbZ |
| RA | 1,069,250 | A→G | L197S (TTA→TCA) | rutG ← | pyrimidine:H(+) symporter |
| RA | 1,072,185 | C→T | A227T (GCT→ACT) | rutB ← | peroxyureidoacrylate/ureidoacrylate amidohydrolase |
| RA | 1,097,580 | (G)7→8 | noncoding (73/88 nt) | serX ← | tRNA‑Ser |
| RA | 1,113,609 | A→G | T11A (ACC→GCC) | yceK → | DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,139,092 | A→G | S239G (AGT→GGT) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,143,140 | T→C | T410A (ACT→GCT) | rne ← | ribonuclease E |
| RA | 1,165,738 | T→C | intergenic (+53/‑347) | ycfP → / → ndh | UPF0227 protein YcfP/NADH:quinone oxidoreductase II |
| RA | 1,180,739 | (G)6→7 | coding (529/789 nt) | ycfZ ← | putative inner membrane protein |
| RA | 1,212,088 | (C)8→9 | intergenic (‑85/+172) | iraM ← / ← ymgK | anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis/protein YmgK |
| RA | 1,220,971 | G→A | pseudogene (1371/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| RA | 1,224,204 | A→G | intergenic (+297/+75) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,234,526 | C→T | L64L (CTG→CTA) | nhaB ← | Na(+):H(+) antiporter NhaB |
| RA | 1,260,689 | C→T | V39I (GTC→ATC) | dauA ← | aerobic C4‑dicarboxylate transporter DauA |
| RA | 1,279,039 | A→G | T361T (ACA→ACG) | narK → | nitrate:nitrite antiporter NarK |
| RA | 1,297,007 | T→C | Y372C (TAC→TGC) | adhE ← | aldehyde‑alcohol dehydrogenase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,310,954 | C→T | intergenic (‑89/‑135) | yciI ← / → tonB | protein YciI/Ton complex subunit TonB |
| RA | 1,321,814 | (G)5→4 | coding (1133/1563 nt) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,370,044 | (T)9→8 | intergenic (+41/‑172) | pspE → / → ycjM | thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase |
| RA | 1,373,485 | C→T | T88T (ACC→ACT) | ycjO → | putative ABC transporter membrane subunit YcjO |
| RA | 1,387,918 | C→T | A400V (GCC→GTC) | tyrR → | DNA‑binding transcriptional dual regulator TyrR |
| RA | 1,442,689 | A→G | V52A (GTA→GCA) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,474,315 | (C)6→5 | coding (95/861 nt) | pdxI → | pyridoxine 4‑dehydrogenase |
| RA | 1,505,428 | (A)5→6 | coding (653/1176 nt) | ydcO ← | putative transport protein YdcO |
| RA | 1,527,388 | T→C | intergenic (+236/‑502) | yncH → / → rhsE | DUF5445 domain‑containing protein YncH/RhsE protein in rhs element |
| RA | 1,541,351 | C→T | E414K (GAA→AAA) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,565,689 | Δ1 bp | coding (45/2400 nt) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| RA | 1,566,253 | A→G | G296G (GGT→GGC) | dosC ← | diguanylate cyclase DosC |
| RA | 1,594,256 | (C)8→9 | pseudogene (3831/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| RA | 1,602,565 | C→T | A359V (GCC→GTC) | lsrA → | Autoinducer‑2 ABC transporter ATP binding subunit |
| RA | 1,609,036 | C→T | intergenic (‑14/+193) | yneE ← / ← uxaB | conserved inner membrane protein YneE/tagaturonate reductase |
| RA | 1,613,702 | T→C | L334L (TTA→TTG) | sad ← | NAD(+)‑dependent succinate semialdehyde dehydrogenase |
| RA | 1,632,654 | T→C | intergenic (‑369/‑236) | ydfJ ← / → ynfT | putative transporter YdfJ/Qin prophage; protein YnfT |
| RA | 1,643,992 | T→C | T105A (ACA→GCA) | ydfU ← | Qin prophage; protein YdfU |
| RA | 1,685,542 | (C)6→5 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,709,415 | (C)7→8 | coding (274/1059 nt) | rsxD → | SoxR [2Fe‑2S] reducing system protein RsxD |
| RA | 1,712,168 | +G | intergenic (+10/‑601) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,762,564 | T→C | A482A (GCA→GCG) | sufB ← | Fe‑S cluster scaffold complex subunit SufB |
| RA | 1,764,382 | T→C | D2G (GAC→GGC) | sufA ← | iron‑sulfur cluster insertion protein SufA |
| RA | 1,786,326 | (T)7→8 | coding (787/2379 nt) | ppsA ← | phosphoenolpyruvate synthetase |
| RA | 1,837,377 | Δ1 bp | coding (166/1536 nt) | ynjC → | putative ABC transporter membrane subunit YnjC |
| RA | 1,850,185 | T→C | V450A (GTT→GCT) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,873,384 | A→G | K448K (AAA→AAG) | dgcJ → | putative diguanylate cyclase DgcJ |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,898,419 | T→C | intergenic (+123/‑8) | sdaA → / → pdeD | L‑serine deaminase I/putative c‑di‑GMP phosphodiesterase PdeD |
| RA | 1,965,828 | G→A | P122S (CCG→TCG) | flhB ← | flagellar biosynthesis protein FlhB |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,985,500 | T→C | N210S (AAC→AGC) | araF ← | arabinose ABC transporter periplasmic binding protein |
| RA | 2,019,245 | T→C | V287A (GTT→GCT) | fliK → | flagellar hook‑length control protein |
| RA | 2,026,449 | (C)5→6 | coding (1569/1695 nt) | dgcQ ← | putative diguanylate cyclase DgcQ |
| RA | 2,041,215 | T→C | intergenic (+97/‑160) | msrQ → / → zinT | periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT |
| RA | 2,048,107 | G→T | G1057V (GGC→GTC) | yeeJ → | inverse autotransporter adhesin |
| RA | 2,073,667 | T→C | V710A (GTC→GCC) | flu → | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| RA | 2,107,777 | G→A | R185C (CGC→TGC) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,151,486 | A→G | N101S (AAC→AGC) | yegJ → | DUF2314 domain‑containing protein YegJ |
| RA | 2,160,378 | T→C | L665L (TTG→CTG) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,230,983 | T→C | G120G (GGT→GGC) | yohJ → | PF03788 family membrane protein YohJ |
| RA | 2,277,265 | T→C | G322G (GGT→GGC) | yejF → | putative oligopeptide ABC transporter ATP binding subunit |
| RA | 2,286,328 | (T)7→8 | intergenic (+41/+62) | proL → / ← yejO | tRNA‑Pro/adhesin‑like autotransporter YejO |
| RA | 2,397,931 | A→G | T745T (ACT→ACC) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| RA | 2,413,791 | T→C | S108P (TCT→CCT) | ackA → | acetate kinase |
| RA | 2,430,286 | G→A | P160S (CCC→TCC) | cvpA ← | colicin V production protein |
| RA | 2,446,579 | T→C | T299A (ACC→GCC) | aroC ← | chorismate synthase |
| RA | 2,488,857 | A→G | G104G (GGT→GGC) | yfdE ← | acetyl‑CoA:oxalate CoA‑transferase |
| RA | 2,501,939 | T→C | R270R (CGT→CGC) | ypdC → | putative AraC‑type DNA‑binding transcriptional regulator YpdC |
| RA | 2,527,823 | T→C | V293A (GTG→GCG) | yfeH → | putative solute:Na(+) symporter |
| RA | 2,533,649 | G→A | intergenic (+269/‑115) | cysK → / → ptsH | O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr |
| RA | 2,558,288 | T→C | N131S (AAC→AGC) | eutB ← | ethanolamine ammonia‑lyase subunit alpha |
| RA | 2,599,757 | A→G | F2L (TTC→CTC) | dapA ← | 4‑hydroxy‑tetrahydrodipicolinate synthase |
| RA | 2,602,017 | (C)7→8 | coding (200/2019 nt) | hyfB → | hydrogenase 4 component B |
| RA | 2,609,780 | G→A | E432K (GAA→AAA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,636,499 | G→A | N286N (AAC→AAT) | der ← | 50S ribosomal subunit stability factor |
| RA | 2,638,026 | (C)6→5 | coding (627/1179 nt) | bamB ← | outer membrane protein assembly factor BamB |
| RA | 2,678,478 | T→C | D297G (GAC→GGC) | yphF ← | putative ABC transporter periplasmic binding protein YphF |
| RA | 2,682,164 | T→C | A194A (GCA→GCG) | yphG ← | DUF5107 domain‑containing protein YphG |
| JC | 2,734,543 | (C)8→11 | coding (492/732 nt) | pgeF ← | polyphenol oxidase YfiH |
| RA | 2,774,325 | A→G | A336A (GCA→GCG) | yfjW → | CP4‑57 prophage; uncharacterized protein YfjW |
| RA | 2,788,446 | A→G | pseudogene (2050/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| RA | 2,805,765 | T→C | G317G (GGT→GGC) | proV → | glycine betaine ABC transporter ATP binding subunit ProV |
| RA | 2,811,134 | A→G | H122R (CAC→CGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,851,590 | T→C | V197A (GTA→GCA) | hypB → | hydrogenase isoenzymes nickel incorporation protein HypB |
| MC JC | 2,857,096 | Δ2,538 bp | coding (4‑2541/2562 nt) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,860,694 | T→C | I181V (ATT→GTT) | ygbI ← | putative DeoR‑type DNA‑binding transcriptional regulator YgbI |
| RA | 2,867,926 | (C)6→8 | coding (828/1140 nt) | nlpD ← | murein hydrolase activator NlpD |
| RA | 2,870,284 | T→C | T341A (ACA→GCA) | truD ← | tRNA pseudouridine(13) synthase |
| RA | 2,897,866 | T→C | N2S (AAC→AGC) | ygcS ← | putative transporter YgcS |
| RA | 2,904,716 | C→T | intergenic (+1342/+31) | ygcE → / ← queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,926,701 | G→C | V132L (GTC→CTC) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,949,993 | (T)5→6 | coding (752/1332 nt) | argA → | N‑acetylglutamate synthase |
| RA | 2,979,659 | A→G | E213E (GAA→GAG) | lysR → | DNA‑binding transcriptional dual regulator LysR |
| RA | 3,025,101 | G→A | G251S (GGC→AGC) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,052,002 | G→A | H106Y (CAT→TAT) | ubiI ← | 2‑octaprenylphenol hydroxylase |
| RA | 3,068,157 | T→C | intergenic (‑77/+16) | yggE ← / ← argO | uncharacterized protein YggE/L‑arginine exporter |
| RA | 3,077,842 | T→C | T340A (ACG→GCG) | cmtA ← | mannitol‑specific PTS enzyme IICB component CmtA |
| RA | 3,086,529 | (A)8→7 | coding (122/252 nt) | yqgD ← | DUF2684 domain‑containing protein YqgD |
| RA | 3,092,566 | (G)6→7 | coding (689/951 nt) | gshB → | glutathione synthetase |
| RA | 3,109,187 | A→G | intergenic (‑32/‑366) | speC ← / → yqgA | ornithine decarboxylase, biosynthetic/DUF554 domain‑containing protein YqgA |
| RA | 3,129,647 | T→C | Q190R (CAG→CGG) | yghO ← | putative DNA‑binding transcriptional regulator YghO |
| RA | 3,150,497 | A→G | Y279C (TAC→TGC) | yghA → | NADP(+)‑dependent aldehyde reductase |
| RA | 3,171,900 | T→C | G104G (GGA→GGG) | ygiZ ← | conserved inner membrane protein YgiZ |
| RA | 3,195,218 | (G)6→8 | noncoding (23/144 nt) | sibE ← | small RNA SibE |
| RA | 3,216,334 | T→C | H53R (CAC→CGC) | nfeF ← | NADPH‑dependent ferric chelate reductase |
| RA | 3,254,369 | G→A | W17* (TGG→TGA) | yhaK → | bicupin‑related protein |
| RA | 3,276,320 | G→A | E347K (GAG→AAG) | garD → | galactarate dehydratase |
| RA | 3,282,062 | T→C | R29R (CGT→CGC) | agaS → | putative galactosamine‑6‑phosphate deaminase/isomerase |
| RA | 3,322,193 | T→C | T105A (ACC→GCC) | secG ← | Sec translocon subunit SecG |
| RA | 3,335,900 | T→C | I199V (ATT→GTT) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,339,749 | A→G | V106A (GTC→GCC) | mlaF ← | intermembrane phospholipid transport system, ATP binding subunit MlaF |
| RA | 3,344,820 | A→G | Q35R (CAG→CGG) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,345,289 | G→A | A191A (GCG→GCA) | rpoN → | RNA polymerase, sigma 54 (sigma N) factor |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,380,327 | A→G | D46G (GAC→GGC) | yhcB → | conserved protein YhcB |
| RA | 3,385,853 | (T)8→9 | intergenic (+52/+4) | yhcN → / ← yhcO | DUF1471 domain‑containing stress‑induced protein YhcN/putative barnase inhibitor |
| RA | 3,388,726 | A→G | V134A (GTT→GCT) | aaeA ← | aromatic carboxylic acid efflux pump membrane fusion protein |
| RA | 3,429,505 | T→C | G90G (GGT→GGC) | yrdA → | protein YrdA |
| RA | 3,440,683 | G→A | T116I (ACC→ATC) | rpoA ← | RNA polymerase subunit alpha |
| RA | 3,463,048 | A→C | N42T (AAC→ACC) | gspK → | Type II secretion system protein GspK |
| RA | 3,465,102 | A→G | A7A (GCA→GCG) | gspM → | Type II secretion system protein GspM |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,585,536 | G→A | Q430* (CAG→TAG) | ggt ← | glutathione hydrolase proenzyme |
| RA | 3,642,936 | T→C | H66R (CAC→CGC) | rsmJ ← | 16S rRNA m(2)G1516 methyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,860,630 | (C)5→4 | coding (348/894 nt) | yidL → | putative DNA‑binding transcriptional regulator YidL |
| RA | 3,904,500 | A→G | G366G (GGT→GGC) | bglF ← | beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase |
| RA | 3,926,857 | Δ1 bp | coding (147/459 nt) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| JC JC | 4,093,558 | IS5 (+) +4 bp | coding (712‑715/825 nt) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,099,002 | T→C | G119G (GGT→GGC) | rhaR → | DNA‑binding transcriptional activator RhaR |
| RA | 4,118,621 | (A)7→8 | coding (107/246 nt) | zapB → | cell division factor ZapB |
| RA | 4,152,837 | A→G | Y88H (TAC→CAC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,153,753 | A→G | F365F (TTT→TTC) | argE ← | acetylornithine deacetylase |
| RA | 4,209,709 | C→A | intergenic (+21/‑65) | rrsE → / → gltV | 16S ribosomal RNA/tRNA‑Glu |
| RA | 4,223,596 | Δ1 bp | coding (33/825 nt) | iclR ← | DNA‑binding transcriptional repressor IclR |
| RA | 4,224,678 | A→G | Y284C (TAC→TGC) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,226,892 | T→C | V1022A (GTG→GCG) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,232,953 | T→C | N94S (AAC→AGC) | lysC ← | aspartate kinase III |
| RA | 4,288,658 | A→G | T299A (ACC→GCC) | nrfA → | cytochrome c552 nitrite reductase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,299,397 | T→C | intergenic (‑31/+167) | fdhF ← / ← mdtP | formate dehydrogenase H/putative multidrug efflux pump outer membrane channel |
| RA | 4,385,931 | (A)7→8 | coding (228/315 nt) | yjeO → | conserved inner membrane protein YjeO |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA 2'‑O‑ribose G2251 methyltransferase/conserved protein YjfI |
| RA | 4,439,090 | A→G | V58A (GTG→GCG) | ytfJ ← | protein YtfJ |
| RA | 4,445,549 | A→G | T480A (ACC→GCC) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,460,156 | +G | coding (209/465 nt) | nrdG ← | anaerobic ribonucleoside‑triphosphate reductase activating protein |
| RA | 4,488,579 | (C)7→8 | coding (1485/1503 nt) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,592,969 | C→T | A438V (GCC→GTC) | tsr → | methyl‑accepting chemotaxis protein Tsr |
| RA | 4,599,347 | A→G | L32S (TTA→TCA) | opgB ← | phosphoglycerol transferase I |
| RA | 4,606,330 | (G)8→9 | noncoding (72/87 nt) | leuQ ← | tRNA‑Leu |
| RA | 4,628,191 | C→T | Q293* (CAA→TAA) | nadR → | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR |
| RA | 4,630,832 | C→T | R34C (CGT→TGT) | slt → | soluble lytic murein transglycosylase |
| RA | 4,641,025 | Δ1 bp | coding (84/687 nt) | yjtD → | putative rRNA methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 226143–226298 | 228571–226989 | 692–2429 | 6 [5] | [4] 6 | rrlH | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 433025 | 433120 | 96 | 6 [5] | [5] 6 | nrdR | NrdR transcriptional repressor |
| * | * | ÷ | NC_000913 | 1632676–1632689 | 1634906–1634640 | 1952–2231 | 6 [5] | [5] 7 | ynfT–[ydfN] | ynfT,ydfK,pinQ,tfaQ,[ydfN] |
| * | * | ÷ | NC_000913 | 3423763–3424233 | 3424530–3424239 | 7–768 | 6 [5] | [5] 6 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375001 = | NA (NA) | 5 (0.180) | 4/204 | 2.6 | NA | noncoding (17/36 nt) | other | REP31b |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 375102 = | NA (NA) | 11 (0.390) | 7/204 | 1.8 | NA | noncoding (17/36 nt) | other | REP31d |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 375203 = | NA (NA) | 6 (0.210) | 4/204 | 2.6 | NA | noncoding (17/36 nt) | other | REP31f |
| ? | NC_000913 | 377351 = | NA (NA) | noncoding (16/37 nt) | other | REP32a | |||||
| * | ? | NC_000913 | 1207790 = | 4 (0.110) | 50 (1.570) | 41/232 | 0.0 | 94.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 2 (0.060) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 4 (0.110) | 25 (0.780) | 22/232 | 0.4 | 90.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 2 (0.060) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 66 (1.820) | 55 (1.530) | 38/262 | 0.1 | 62.3% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 38 (1.050) | 23/264 | 0.5 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 0 (0.000) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||