mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 36,268 | T→C | 6.7% | D72G (GAC→GGC) | CJ019_00044 ← | hypothetical protein |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 53,025 | C→A | 6.7% | P279P (CCC→CCA) | CJ019_00057 → | hypothetical protein |
| RA | 63,547 | C→T | 6.2% | Y61Y (TAC→TAT) | tag → | DNA‑3‑methyladenine glycosylase 1 |
| RA | 113,311 | T→C | 6.4% | E27E (GAA→GAG) | CJ019_00120 ← | hypothetical protein |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 169,760 | A→C | 6.2% | intergenic (+724/+2963) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,792 | G→A | 6.1% | intergenic (+756/+2931) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,811 | C→A | 6.6% | intergenic (+775/+2912) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,812 | T→C | 5.7% | intergenic (+776/+2911) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,813 | A→G | 6.8% | intergenic (+777/+2910) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,817 | T→A | 6.9% | intergenic (+781/+2906) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,819 | T→G | 6.5% | intergenic (+783/+2904) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,820 | T→C | 8.0% | intergenic (+784/+2903) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,821 | A→G | 6.9% | intergenic (+785/+2902) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,822 | G→T | 7.5% | intergenic (+786/+2901) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 172,862 | A→G | 5.9% | L783P (CTC→CCC) | fhuA_1 ← | Ferrichrome outer membrane transporter/phagereceptor |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 336,483 | A→T | 21.0% | P4P (CCT→CCA) | CJ019_00309 ← | hypothetical protein |
| RA | 339,836 | T→G | 36.1% | S354R (AGC→CGC) | CJ019_00314 ← | hypothetical protein |
| RA | 364,653 | C→T | 6.6% | L362L (CTG→TTG) | stcD_1 → | putative N‑methylproline demethylase |
| RA | 456,440 | C→A | 8.4% | A4S (GCT→TCT) | ramA_1 ← | (R)‑stereoselective amidase |
| RA | 478,881 | A→C | 27.4% | V35G (GTC→GGC) | apaH_1 ← | Bis(5'‑nucleosyl)‑tetraphosphatase, symmetrical |
| RA | 504,483 | G→A | 8.0% | R136Q (CGG→CAG) | trpC → | Indole‑3‑glycerol phosphate synthase |
| RA | 537,063 | C→T | 6.4% | D751D (GAC→GAT) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 603,705 | C→T | 5.2% | R36H (CGC→CAC) | btuB_1 ← | Vitamin B12 transporter BtuB |
| RA | 879,368 | C→T | 5.7% | R743R (CGC→CGT) | malT → | HTH‑type transcriptional regulator MalT |
| RA | 887,141 | G→C | 17.5% | L15L (CTG→CTC) | slyD → | FKBP‑type peptidyl‑prolyl cis‑trans isomeraseSlyD |
| RA | 1,010,006 | G→A | 5.9% | Y45Y (TAC→TAT) | CJ019_00951 ← | hypothetical protein |
| RA | 1,047,512 | A→C | 41.2% | intergenic (‑104/+38) | CJ019_00985 ← / ← CJ019_00986 | hypothetical protein/hypothetical protein |
| RA | 1,052,536 | T→G | 24.3% | S90R (AGC→CGC) | argO ← | Arginine exporter protein ArgO |
| RA | 1,062,909 | T→G | 17.3% | F341V (TTT→GTT) | aroP_1 → | Aromatic amino acid transport protein AroP |
| RA | 1,063,986 | T→G | 32.3% | D151A (GAC→GCC) | CJ019_01001 ← | hypothetical protein |
| RA | 1,084,026 | T→G | 6.3% | V143G (GTA→GGA) | CJ019_01018 → | hypothetical protein |
| RA | 1,084,279 | A→C | 34.4% | N73T (AAC→ACC) | sodB_2 → | Superoxide dismutase [Mn/Fe] |
| RA | 1,209,298 | G→T | 5.7% | G238G (GGC→GGA) | rhlB_1 ← | ATP‑dependent RNA helicase RhlB |
| RA | 1,246,491 | T→G | 39.0% | intergenic (‑84/+23) | rnfA ← / ← metG | Na( )‑translocating ferredoxin:NAD( )oxidoreductase complex subunit A/Methionine‑‑tRNA ligase |
| RA | 1,308,712 | A→C | 37.6% | T32P (ACG→CCG) | CJ019_01226 → | hypothetical protein |
| RA | 1,309,442 | C→T | 10.2% | intergenic (+12/‑194) | CJ019_01229 → / → aaeB_2 | hypothetical protein/p‑hydroxybenzoic acid efflux pump subunit AaeB |
| RA | 1,310,781 | C→T | 5.9% | T382T (ACC→ACT) | aaeB_2 → | p‑hydroxybenzoic acid efflux pump subunit AaeB |
| RA | 1,313,943 | A→C | 45.4% | L614R (CTG→CGG) | CJ019_01235 ← | hypothetical protein |
| RA | 1,463,765 | C→T | 6.5% | V196V (GTG→GTA) | CJ019_01381 ← | Mannuronan synthase |
| RA | 1,497,034 | G→A | 6.0% | R113H (CGT→CAT) | rpsI → | 30S ribosomal protein S9 |
| RA | 1,718,463 | T→G | 34.2% | Q65P (CAG→CCG) | CJ019_01614 ← | hypothetical protein |
| RA | 1,718,476 | T→G | 22.2% | T61P (ACC→CCC) | CJ019_01614 ← | hypothetical protein |
| RA | 1,718,490 | T→G | 18.7% | D56A (GAC→GCC) | CJ019_01614 ← | hypothetical protein |
| RA | 1,735,713 | T→G | 25.0% | D69A (GAC→GCC) | CJ019_01634 ← | hypothetical protein |
| RA | 1,779,174 | G→A | 9.3% | intergenic (+134/‑52) | rpsB → / → tsf | 30S ribosomal protein S2/Elongation factor Ts |
| RA | 1,787,510 | T→A | 6.5% | F558I (TTC→ATC) | bamA_1 → | Outer membrane protein assembly factor BamA |
| RA | 1,791,678 | T→G | 22.1% | L182R (CTG→CGG) | lpxB → | Lipid‑A‑disaccharide synthase |
| RA | 1,806,746 | G→C | 100% | W15C (TGG→TGC) | yeiG → | S‑formylglutathione hydrolase YeiG |
| RA | 1,809,343 | G→A | 6.3% | P53P (CCG→CCA) | surE → | 5'‑nucleotidase SurE |
| RA | 1,834,908 | T→G | 27.2% | T38P (ACC→CCC) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,835,115 | T→A | 5.3% | Q912L (CAG→CTG) | barA ← | Signal transduction histidine‑protein kinaseBarA |
| RA | 1,836,360 | C→A | 39.9% | S497I (AGT→ATT) | barA ← | Signal transduction histidine‑protein kinaseBarA |
| RA | 1,881,160 | G→A | 5.7% | F723F (TTC→TTT) | rcsC_2 ← | Sensor histidine kinase RcsC |
| RA | 1,898,174 | A→C | 27.0% | K458T (AAG→ACG) | nasD → | Nitrite reductase [NAD(P)H] |
| RA | 2,010,497 | T→C | 7.4% | I41T (ATT→ACT) | prsD_1 → | Type I secretion system ATP‑binding proteinPrsD |
| RA | 2,313,489 | G→A | 5.8% | S270L (TCG→TTG) | gltC_2 ← | HTH‑type transcriptional regulator GltC |
| RA | 2,318,786 | A→C | 45.4% | G525G (GGT→GGG) | yjcS ← | Putative alkyl/aryl‑sulfatase YjcS |
| RA | 2,708,473 | T→G | 27.8% | V44G (GTG→GGG) | CJ019_02558 → | hypothetical protein |
| RA | 2,827,559 | C→A | 6.3% | V302F (GTT→TTT) | aldA_2 ← | Putative aldehyde dehydrogenase AldA |
| RA | 2,938,227 | T→G | 32.4% | R533R (CGT→CGG) | pqiB → | Intermembrane transport protein PqiB |
| RA | 3,194,920 | T→C | 6.6% | F397F (TTT→TTC) | puuB_3 → | Gamma‑glutamylputrescine oxidoreductase |
| RA | 3,312,431 | T→G | 28.1% | T258P (ACG→CCG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,312,451 | A→C | 37.5% | L251R (CTG→CGG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,312,455 | A→C | 23.6% | S250A (TCG→GCG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,412,899 | G→A | 5.8% | P85S (CCT→TCT) | lexA_2 ← | LexA repressor |
| RA | 3,440,343 | A→C | 100% | S18R (AGC→CGC) | CJ019_03266 → | hypothetical protein |
| RA | 3,485,289 | A→C | 17.0% | F63V (TTC→GTC) | CJ019_03301 ← | hypothetical protein |
| RA | 3,491,319 | A→C | 48.4% | intergenic (‑681/+40) | CJ019_03306 ← / ← CJ019_03307 | hypothetical protein/hypothetical protein |
| RA | 3,548,237 | C→A | 6.5% | Q266K (CAG→AAG) | mshA_5 → | D‑inositol‑3‑phosphate glycosyltransferase |
| RA | 3,598,388 | T→G | 28.1% | L184R (CTT→CGT) | CJ019_03412 → | hypothetical protein |
| RA | 3,652,041 | A→T | 15.5% | N294K (AAT→AAA) | cntA ← | Metal‑staphylopine‑binding protein CntA |
| RA | 3,732,721 | T→C | 6.5% | I36T (ATC→ACC) | bcr_2 → | Bicyclomycin resistance protein |
| RA | 3,816,362 | A→C | 16.6% | R295R (CGT→CGG) | kdgK ← | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,818,237 | C→T | 8.2% | G289D (GGC→GAC) | kdgR_1 ← | HTH‑type transcriptional regulator KdgR |
| RA | 3,944,256 | T→G | 26.5% | E142D (GAA→GAC) | CJ019_03729 ← | hypothetical protein |
| RA | 3,957,251 | G→A | 100% | P133L (CCG→CTG) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,985,770 | G→A | 7.3% | A315V (GCC→GTC) | CJ019_03763 ← | hypothetical protein |
| RA | 3,986,622 | T→G | 35.3% | D31A (GAT→GCT) | CJ019_03763 ← | hypothetical protein |
| RA | 4,077,164 | T→G | 34.9% | L173R (CTG→CGG) | artJ_2 → | ABC transporter arginine‑binding protein 1 |
| RA | 4,094,877 | A→G | 6.7% | I115T (ATC→ACC) | CJ019_03856 ← | hypothetical protein |
| RA | 4,135,607 | A→C | 48.9% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,169,169 | C→A | 12.5% | Q69K (CAA→AAA) | CJ019_03921 → | hypothetical protein |
| RA | 4,245,145 | A→C | 45.8% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| JC | 4,257,351 | +CGCGGCCG | 100% | intergenic (‑280/+8) | CJ019_03991 ← / ← CJ019_03994 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| RA | 4,287,814 | T→G | 55.0% | intergenic (+119/‑106) | CJ019_04021 → / → gloA | hypothetical protein/Lactoylglutathione lyase |
| RA | 4,363,536 | C→T | 6.5% | intergenic (‑507/‑144) | CJ019_04109 ← / → CJ019_04110 | hypothetical protein/hypothetical protein |
| RA | 4,468,574 | T→A | 7.8% | A344A (GCA→GCT) | sasA_16 ← | Adaptive‑response sensory‑kinase SasA |
| RA | 4,500,206 | A→C | 36.3% | R63R (CGT→CGG) | cysG_1 ← | Siroheme synthase |
| RA | 4,646,123 | T→C | 9.8% | S329P (TCC→CCC) | aceA → | Isocitrate lyase |
| RA | 4,688,819 | G→A | 7.9% | R277H (CGC→CAC) | yhaJ_2 → | HTH‑type transcriptional regulator YhaJ |
| RA | 4,688,831 | T→G | 27.8% | L281R (CTG→CGG) | yhaJ_2 → | HTH‑type transcriptional regulator YhaJ |
| RA | 4,747,255 | T→G | 30.2% | S294A (TCG→GCG) | macB → | Macrolide export ATP‑binding/permease proteinMacB |
| RA | 4,840,685 | G→T | 9.3% | L490L (CTG→CTT) | copA_3 → | putative copper‑importing P‑type ATPase A |
| RA | 4,874,709 | A→C | 28.8% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,880,363 | A→C | 45.9% | V96G (GTG→GGG) | CJ019_04574 ← | hypothetical protein |
| RA | 4,880,375 | T→G | 44.3% | E92A (GAG→GCG) | CJ019_04574 ← | hypothetical protein |
| RA | 5,115,355 | T→C | 6.1% | C344R (TGC→CGC) | trkI_2 → | Trk system potassium uptake protein TrkI |
| RA | 5,180,021 | T→G | 24.4% | E136A (GAG→GCG) | aceK ← | Isocitrate dehydrogenase kinase/phosphatase |
| RA | 5,241,188 | A→C | 21.3% | F455V (TTC→GTC) | CJ019_04935 ← | hypothetical protein |
| RA | 5,247,847 | A→C | 21.4% | L260R (CTG→CGG) | CJ019_04943 ← | hypothetical protein |
| RA | 5,287,386 | G→A | 6.1% | G323G (GGC→GGT) | mmsA ← | Methylmalonate‑semialdehyde dehydrogenase[acylating] |
| RA | 5,301,325 | A→C | 49.1% | intergenic (‑106/+3467) | recC ← / ← PP_RS08750 | RecBCD enzyme subunit RecC/tRNA‑Val |
| RA | 5,321,174 | C→T | 5.6% | V32V (GTG→GTA) | hmuV ← | Hemin import ATP‑binding protein HmuV |
| RA | 5,373,277 | G→A | 9.1% | L298L (CTG→CTA) | recN → | DNA repair protein RecN |
| RA | 5,393,134 | G→C | 26.2% | A434P (GCC→CCC) | CJ019_05075 → | hypothetical protein |
| RA | 5,533,095 | G→A | 100% | R132C (CGC→TGC) | CJ019_05210 ← | hypothetical protein |
| RA | 5,580,442 | C→T | 6.4% | W452* (TGG→TGA) | parE ← | DNA topoisomerase 4 subunit B |
| RA | 5,684,652 | G→C | 22.2% | K124N (AAG→AAC) | CJ019_05336 → | hypothetical protein |
| RA | 5,688,615 | T→G | 60.0% | R228R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,688,637 | A→C | 64.1% | S236R (AGC→CGC) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,688,645 | T→G | 51.9% | R238R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,756,055 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,804,445 | A→C | 18.8% | T373P (ACC→CCC) | priA → | Primosomal protein N' |
| RA | 5,977,512 | C→T | 6.2% | Q88Q (CAG→CAA) | ycaC_2 ← | putative hydrolase YcaC |
| RA | 6,001,307 | A→C | 34.7% | S313R (AGC→CGC) | mdtK → | Multidrug resistance protein MdtK |
| RA | 6,014,847 | A→C | 27.2% | K133N (AAA→AAC) | puuB_8 → | Gamma‑glutamylputrescine oxidoreductase |
| RA | 6,020,340 | A→C | 39.3% | L58R (CTG→CGG) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,020,344 | T→G | 29.6% | S57R (AGC→CGC) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,073,990 | G→T | 5.4% | S72* (TCG→TAG) | CJ019_05690 ← | hypothetical protein |
| RA | 6,101,657 | C→T | 5.7% | G213R (GGA→AGA) | yeiR ← | Zinc‑binding GTPase YeiR |
| RA | 6,116,246 | C→A | 8.0% | P6P (CCG→CCT) | gbsA ← | Betaine aldehyde dehydrogenase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 87933 | 88044 | 112 | 19 [17] | [12] 18 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | ACB122 | 161213 | 161419–161315 | 103–207 | 18 [17] | [16] 18 | [uctC_1] | [uctC_1] |
| * | * | ÷ | ACB122 | 277592 | 277689 | 98 | 18 [17] | [17] 18 | [betT2]–[tauD_2] | [betT2],[tauD_2] |
| * | * | ÷ | ACB122 | 517190 | 517439 | 250 | 20 [12] | [17] 18 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | ACB122 | 674263 | 674393 | 131 | 18 [17] | [17] 18 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | ACB122 | 1149232 | 1149451 | 220 | 18 [15] | [17] 20 | [sasA_4] | [sasA_4] |
| * | * | ÷ | ACB122 | 1304746 | 1304855 | 110 | 18 [17] | [15] 18 | CJ019_01223/rapA | putative signaling protein/RNA polymerase‑associated protein RapA |
| * | * | ÷ | ACB122 | 1396578 | 1396679 | 102 | 26 [17] | [16] 18 | [CJ019_01313]–[mcpU_1] | [CJ019_01313],[mcpU_1] |
| * | * | ÷ | ACB122 | 1585593 | 1585705 | 113 | 19 [17] | [17] 18 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | ACB122 | 1697640 | 1697728 | 89 | 18 [16] | [15] 18 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | ACB122 | 1705089 | 1705198 | 110 | 19 [17] | [16] 19 | ppc/adk | Phosphoenolpyruvate carboxylase/Adenylate kinase |
| * | * | ÷ | ACB122 | 1833095 | 1833176 | 82 | 18 [17] | [14] 18 | [resA_1]–[CJ019_01751] | [resA_1],[CJ019_01751] |
| * | * | ÷ | ACB122 | 1835809 | 1835913 | 105 | 18 [16] | [17] 18 | barA | Signal transduction histidine‑protein kinaseBarA |
| * | * | ÷ | ACB122 | 1914559 | 1914669 | 111 | 18 [17] | [17] 19 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | ACB122 | 1940798 | 1940940 | 143 | 18 [16] | [17] 18 | CJ019_01857/gshAB | hypothetical protein/Glutathione biosynthesis bifunctional proteinGshAB |
| * | * | ÷ | ACB122 | 2288817 | 2288932 | 116 | 18 [16] | [17] 20 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 2393569 | 2393630 | 62 | 18 [17] | [17] 18 | [dgt] | [dgt] |
| * | * | ÷ | ACB122 | 2467207 | 2467225 | 19 | 28 [0] | [12] 31 | CJ019_02325/tal | hypothetical protein/Transaldolase |
| * | * | ÷ | ACB122 | 3046190 | 3046326 | 137 | 20 [16] | [17] 18 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | ACB122 | 3305710 | 3305805 | 96 | 19 [17] | [17] 18 | [CJ019_03107] | [CJ019_03107] |
| * | * | ÷ | ACB122 | 3459826 | 3459957 | 132 | 18 [15] | [17] 20 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | ACB122 | 3769368 | 3769486 | 119 | 18 [17] | [17] 18 | [CJ019_03581] | [CJ019_03581] |
| * | * | ÷ | ACB122 | 4163792 | 4163898 | 107 | 18 [17] | [17] 19 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | ACB122 | 4330052 | 4330137 | 86 | 24 [16] | [13] 19 | [CJ019_04068] | [CJ019_04068] |
| * | * | ÷ | ACB122 | 4344772 | 4344845 | 74 | 18 [9] | [17] 18 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | ACB122 | 4495349 | 4495458 | 110 | 19 [14] | [17] 18 | [xanP]–[dsrE] | [xanP],[dsrE] |
| * | * | ÷ | ACB122 | 4521564 | 4521709 | 146 | 19 [15] | [17] 19 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | ACB122 | 4543545 | 4543719 | 175 | 19 [16] | [17] 20 | [rutR_2] | [rutR_2] |
| * | * | ÷ | ACB122 | 4732426 | 4732535 | 110 | 20 [15] | [14] 19 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | ACB122 | 4801904 | 4802318 | 415 | 18 [16] | [16] 19 | CJ019_04509/dsbD_2 | hypothetical protein/Thiol:disulfide interchange protein DsbD |
| * | * | ÷ | ACB122 | 4846366 | 4846496 | 131 | 20 [17] | [17] 18 | recR/ybaB | Recombination protein RecR/Nucleoid‑associated protein YbaB |
| * | * | ÷ | ACB122 | 4864603 | 4864717 | 115 | 18 [16] | [17] 18 | [pucD] | [pucD] |
| * | * | ÷ | ACB122 | 4933622 | 4982636 | 49015 | 60 [0] | [0] 55 | [CJ019_04628]–[ycaD_3] | [CJ019_04628],aar,CJ019_04630,iscS_3,ddl_2,CJ019_04633,flhB,fliR,fliQ,fliP,CJ019_04638,fliN,fliM,CJ019_04641,CJ019_04642,CJ019_04643,cheB_4,CJ019_04645,fliJ,fliI,CJ019_04648,fliG,fliF,fliE,atoC_3,atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB,cheR2,cheV_3,CJ019_04675,CJ019_04676,CJ019_04677,ycgR,[ycaD_3] |
| * | * | ÷ | ACB122 | 5156441 | 5156590 | 150 | 18 [16] | [17] 18 | [CJ019_04852] | [CJ019_04852] |
| * | * | ÷ | ACB122 | 5188803 | 5188898 | 96 | 18 [17] | [17] 19 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | ACB122 | 5193572 | 5193712 | 141 | 19 [17] | [17] 19 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | ACB122 | 5250776 | 5250872 | 97 | 19 [16] | [17] 19 | [CJ019_04947]–[CJ019_04948] | [CJ019_04947],[CJ019_04948] |
| * | * | ÷ | ACB122 | 5331965 | 5332078 | 114 | 18 [17] | [17] 20 | zraR/pcnB | Transcriptional regulatory protein ZraR/Poly(A) polymerase I |
| * | * | ÷ | ACB122 | 5477709 | 5477864 | 156 | 18 [17] | [15] 18 | [purH] | [purH] |
| * | * | ÷ | ACB122 | 5499121 | 5499318 | 198 | 18 [16] | [17] 19 | [CJ019_05176] | [CJ019_05176] |
| * | * | ÷ | ACB122 | 5529658 | 5529747 | 90 | 18 [17] | [16] 18 | [nadE] | [nadE] |
| * | * | ÷ | ACB122 | 5550456 | 5550621 | 166 | 18 [17] | [17] 19 | [purA] | [purA] |
| * | * | ÷ | ACB122 | 5645610 | 5645691 | 82 | 18 [16] | [17] 18 | CJ019_05302/CJ019_05303 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 5664255 | 5664365 | 111 | 18 [17] | [15] 18 | CJ019_05320/CJ019_05321 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 5674009 | 5674130 | 122 | 18 [17] | [15] 19 | CJ019_05328/CJ019_05329 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 5779133 | 5779243 | 111 | 18 [16] | [16] 18 | selO/trxC | Protein adenylyltransferase SelO/Thioredoxin 2 |
| * | * | ÷ | ACB122 | 5809498 | 5809738 | 241 | 18 [17] | [17] 18 | [pilT] | [pilT] |
| * | * | ÷ | ACB122 | 5895776 | 5895861 | 86 | 18 [17] | [17] 25 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | 3359608 = | 30 (0.560) | 50 (0.940) | 29/230 | NT | 77.2% | intergenic (+217/‑153) | pikAII_1/CJ019_03160 | Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42 |
| ? | ACB122 | 4982637 = | 0 (0.000) | coding (1090/1335 nt) | ycaD_3 | putative MFS‑type transporter YcaD | |||||
| * | ? | ACB122 | = 3376624 | 51 (0.940) | 54 (1.030) | 31/228 | NT | 68.5% | coding (499/546 nt) | CJ019_03184 | hypothetical protein |
| ? | ACB122 | = 4933621 | 0 (0.000) | coding (222/1041 nt) | CJ019_04628 | hypothetical protein | |||||