breseq  version 0.33.1  revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 70,434 C→T 35.3% N16N (AAC→AAT araC → DNA‑binding transcriptional dual regulator
RA 70,581 C→T 30.3% V65V (GTC→GTT araC → DNA‑binding transcriptional dual regulator
RA 70,740 T→G 20.4% G118G (GGT→GGG araC → DNA‑binding transcriptional dual regulator
RA 71,079 C→T 22.8% R231R (CGC→CGT araC → DNA‑binding transcriptional dual regulator
RA 71,082 T→C 23.7% I232I (ATT→ATC araC → DNA‑binding transcriptional dual regulator
RA 71,085 T→C 22.5% S233S (AGT→AGC araC → DNA‑binding transcriptional dual regulator
RA 71,109 T→C 25.5% T241T (ACT→ACC araC → DNA‑binding transcriptional dual regulator
RA 71,175 A→G 24.6% R263R (CGA→CGG araC → DNA‑binding transcriptional dual regulator
RA 71,214 T→C 25.0% F276F (TTT→TTC araC → DNA‑binding transcriptional dual regulator
RA 155,463 A→T 100% *247K (TAA→AAA)  ecpD ← predicted periplasmic pilin chaperone
RA 231,008 T→G 6.4% intergenic (‑127/‑114) yafC ← / → yafD predicted DNA‑binding transcriptional regulator/conserved hypothetical protein
RA 236,101 A→C 24.3% D12A (GAT→GCT)  dnaQ → DNA polymerase III epsilon subunit
RA 236,107 A→C 27.8% E14A (GAA→GCA)  dnaQ → DNA polymerase III epsilon subunit
RA 255,745 A→T 6.5% intergenic (‑29/‑232) pepD ← / → gpt aminoacyl‑histidine dipeptidase/guanine‑hypoxanthine phosphoribosyltransferase
RA 310,235 C→G 5.5% S109T (AGC→ACC)  ykgK ← predicted regulator
RA 310,241 T→C 6.7% Y107C (TAC→TGC)  ykgK ← predicted regulator
RA 547,694 A→G 100% pseudogene (114/261 nt)
pseudogene (114/1259 nt)
ylbE →
ylbE →
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
RA 547,831:1 +G 100% pseudogene (251/261 nt)
pseudogene (251/1259 nt)
ylbE →
ylbE →
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment
ECK0512:JW0508+JW0507:b4572; hypothetical protein
RA 556,858 A→T 100% L36Q (CTG→CAG)  folD ← bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase
MC JC 654,214 Δ1,199 bp 100% [dcuC][dcuC] [dcuC], insH, [dcuC]
RA 1,093,686 T→C 100% V130A (GTA→GCA)  ycdT → predicted diguanylate cyclase
MC JC 1,301,041 Δ1,336 bp 100% insCinsD insC, insD
RA 1,303,631 C→T 100% Q246Y (CAG→TAT)  oppA → oligopeptide transporter subunit
RA 1,303,633 G→T 100% Q246Y (CAG→TAT oppA → oligopeptide transporter subunit
RA 2,124,804 T→C 9.3% N105D (AAC→GAC)  cpsG ← phosphomannomutase
MC JC 2,176,983 Δ1,199 bp 100% [gatA][gatA] [gatA], insH, [gatA]
MC JC 2,320,795 Δ1,336 bp 100% insD[rcsC] insD, insC, [rcsC]
RA 2,587,781 T→C 5.8% F511L (TTT→CTT)  acrD → aminoglycoside/multidrug efflux system
RA 2,809,581 G→A 29.6% G52G (GGG→GGA mprA → DNA‑binding transcriptional regulator
RA 2,866,110 T→A 100% intergenic (‑20/+160) rpoS ← / ← nlpD RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein
MC JC 3,742,938 Δ1,336 bp 100% insDinsC insD, insC
MC JC 3,746,913 Δ1,199 bp 100% [tnaB][tnaB] [tnaB], insH, [tnaB]
RA 3,822,709 T→A 6.1% intergenic (‑52/+169) dinD ← / ← yicC DNA‑damage‑inducible protein/conserved hypothetical protein
RA 3,824,280 T→C 100% pseudogene (413/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,326 T→C 100% pseudogene (459/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,362 A→T 100% pseudogene (495/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,368 G→A 100% pseudogene (501/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,374 C→T 100% pseudogene (507/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,380 2 bp→AA 100% pseudogene (513‑514/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,410 T→A 100% pseudogene (543/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,514 T→C 100% pseudogene (647/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,524 T→G 100% pseudogene (657/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,824,533:1 +G 100% pseudogene (666/687 nt) rph → ECK3633:JW3618:b3643; ribonuclease PH
RA 3,864,291 G→C 7.0% S185S (TCC→TCG mtlR ← DNA‑binding transcriptional repressor
RA 4,271,274 T→C 7.6% L190P (CTC→CCC)  tyrB → tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent
RA 4,271,279 A→G 8.2% N192D (AAT→GAT)  tyrB → tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent
RA 4,271,282 G→C 8.1% D193H (GAT→CAT)  tyrB → tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent
RA 4,271,285 C→T 8.8% Q194* (CAG→TAG)  tyrB → tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent
MC JC 4,310,365 Δ1,199 bp 100% insH[alsK] insH, [alsK]
RA 4,371,273 Δ2 bp 100% intergenic (‑6/+299) dcuA ← / ← aspA C4‑dicarboxylate antiporter/aspartate ammonia‑lyase
RA 4,452,532 G→C 6.2% V1247L (GTA→CTA)  ytfN → conserved hypothetical protein
RA 4,563,589 T→A 100% K207M (AAG→ATG)  iadA ← isoaspartyl dipeptidase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 573852–575008 575999 992–2148 15 [14] [0] 140 insH–[nmpC] insH,[nmpC]
* * ÷ W3110S.gb 721509 721540 32 17 [13] [12] 15 kdpE DNA‑binding response regulator in two‑component regulatory system with KdpD
* * ÷ W3110S.gb 907969 908025 57 16 [14] [14] 17 ybjT conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain
* * ÷ W3110S.gb 1928913 1928978 66 15 [14] [14] 15 ptrB protease II
* * ÷ W3110S.gb 4213628–4216717 4216717 1–3090 15 [14] [14] 17 rrlE–[rrfE] rrlE,[rrfE]

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 20390 =NA (NA)9 (0.170) 3/94 NT NA coding (119/276 nt) insA IS1 repressor protein InsA
?W3110S.gb 20407 = NA (NA)coding (102/276 nt) insA IS1 repressor protein InsA
* ? W3110S.gb 70061 =52 (0.920)26 (0.590)
+CGCGTACAACT
17/80 NT 32.1% intergenic (‑13/‑326) araB/araC L‑ribulokinase/DNA‑binding transcriptional dual regulator
?W3110S.gb 236044 = 88 (1.560)intergenic (‑42/‑23) rnhA/dnaQ ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit
* ? W3110S.gb = 7126557 (1.010)12 (0.290)
+AGGGTCCCTAAGTC
10/74 NT 27.8% coding (879/879 nt) araC DNA‑binding transcriptional dual regulator
?W3110S.gb 3464879 = 29 (0.520)intergenic (‑255/+46) murB/rrfB UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA
* ? W3110S.gb 71653 =80 (1.420)4 (0.090) 4/84 NT 6.1% coding (303/765 nt) yabI conserved inner membrane protein
?W3110S.gb 71685 = 58 (1.250)coding (335/765 nt) yabI conserved inner membrane protein
* ? W3110S.gb 154410 =59 (1.050)4 (0.070) 3/102 NT 6.7% coding (1017/2598 nt) htrE predicted outer membrane usher protein
?W3110S.gb 154431 = 53 (0.940)coding (996/2598 nt) htrE predicted outer membrane usher protein
* ? W3110S.gb = 18232660 (1.070)3 (0.070) 3/82 NT 5.1% intergenic (+18/‑137) degP/cdaR serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator
?W3110S.gb = 182334 64 (1.410)intergenic (+26/‑129) degP/cdaR serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator
* ? W3110S.gb 223991 =NA (NA)10 (0.200) 5/92 NT NA noncoding (221/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 224012 = NA (NA)noncoding (242/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 224254 =NA (NA)3 (0.060) 3/94 NT NA noncoding (484/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 224282 = NA (NA)noncoding (512/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 225047 =NA (NA)3 (0.060) 3/92 NT NA noncoding (1277/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 225075 = NA (NA)noncoding (1305/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 225078 =NA (NA)6 (0.120) 5/88 NT NA noncoding (1308/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 225100 = NA (NA)noncoding (1330/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 225092 =NA (NA)4 (0.080) 3/96 NT NA noncoding (1322/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 225114 = NA (NA)noncoding (1344/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb = 225126NA (NA)4 (0.080) 3/92 NT NA noncoding (1356/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb = 225135 NA (NA)noncoding (1365/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 225282 =NA (NA)7 (0.140) 3/92 NT 100% noncoding (1512/1542 nt) rrsH 16S ribosomal RNA
?W3110S.gb 225294 = 0 (0.000)noncoding (1524/1542 nt) rrsH 16S ribosomal RNA
* ? W3110S.gb 225392 =NA (NA)3 (0.060) 3/92 NT NA noncoding (12/77 nt) ileV tRNA‑Ile
?W3110S.gb 225417 = NA (NA)noncoding (37/77 nt) ileV tRNA‑Ile
* ? W3110S.gb 225680 =30 (0.530)4 (0.080) 3/90 NT 13.1% intergenic (+105/‑79) alaV/rrlH tRNA‑Ala/23S ribosomal RNA
?W3110S.gb = 3468101 NA (NA)intergenic (‑61/+133) rrlB/gltT 23S ribosomal RNA/tRNA‑Glu
* ? W3110S.gb 225889 =NA (NA)4 (0.080) 3/88 NT NA noncoding (131/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 225907 = NA (NA)noncoding (149/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb = 225915NA (NA)5 (0.110) 5/86 NT NA noncoding (157/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb = 225926 NA (NA)noncoding (168/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb = 226403NA (NA)3 (0.060) 3/90 NT NA noncoding (645/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb = 226408 NA (NA)noncoding (650/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb 226815 =NA (NA)3 (0.060) 3/96 NT NA noncoding (1057/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 226840 = NA (NA)noncoding (1082/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb 227072 =NA (NA)4 (0.080) 4/94 NT NA noncoding (1314/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 227097 = NA (NA)noncoding (1339/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb 228057 =NA (NA)5 (0.100) 3/92 NT NA noncoding (2299/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 228076 = NA (NA)noncoding (2318/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb 228278 =NA (NA)4 (0.080) 4/96 NT NA noncoding (2520/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb 228303 = NA (NA)noncoding (2545/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb = 228452NA (NA)5 (0.100) 4/94 NT NA noncoding (2694/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb = 228472 NA (NA)noncoding (2714/2904 nt) rrlH 23S ribosomal RNA
* ? W3110S.gb = 23679840 (0.710)15 (0.570)
+27 bp
9/48 NT 37.3% coding (732/732 nt) dnaQ DNA polymerase III epsilon subunit
?W3110S.gb 4124504 = 67 (1.190)intergenic (+106/‑1) damX/dam hypothetical protein/DNA adenine methylase
* ? W3110S.gb = 274373NA (NA)61 (1.080) 32/102 NT 100% intergenic (‑32/‑176) insH/mmuP IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter
?W3110S.gb 576000 = 0 (0.000)pseudogene (109/1128 nt) nmpC DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin
* ? W3110S.gb 311361 =58 (1.030)3 (0.060) 3/88 NT 6.4% coding (26/228 nt) ykgL hypothetical protein
?W3110S.gb 311384 = 37 (0.760)coding (49/228 nt) ykgL hypothetical protein
* ? W3110S.gb 314453 =60 (1.070)56 (1.040)
+TC
42/98 NT 66.0% coding (873/888 nt) eaeH attaching and effacing protein, pathogenesis factor
?W3110S.gb 3932930 = 0 (0.000)coding (219/1608 nt) dppA dipeptide transporter
* ? W3110S.gb 314454 =NA (NA)4 (0.080) 3/94 NT NA coding (874/888 nt) eaeH attaching and effacing protein, pathogenesis factor
?W3110S.gb 314485 = NA (NA)intergenic (+17/‑21) eaeH/insE attaching and effacing protein, pathogenesis factor/IS3 element protein
* ? W3110S.gb = 315707NA (NA)66 (1.170) 44/102 NT 100% coding (654/687 nt) ykgA predicted DNA‑binding transcriptional regulator
?W3110S.gb 576911 = 0 (0.000)coding (76/498 nt) ybcS predicted lysozyme
* ? W3110S.gb = 31823670 (1.240)4 (0.080) 3/92 NT 5.4% coding (990/1326 nt) ykgC predicted oxidoreductase with FAD/NAD(P)‑binding domain and dimerization domain
?W3110S.gb = 318248 78 (1.540)coding (978/1326 nt) ykgC predicted oxidoreductase with FAD/NAD(P)‑binding domain and dimerization domain
* ? W3110S.gb 381056 =NA (NA)4 (0.080) 4/90 NT NA coding (159/906 nt) insD IS2 insertion element transposase InsAB'
?W3110S.gb 381083 = NA (NA)coding (186/906 nt) insD IS2 insertion element transposase InsAB'
* ? W3110S.gb = 42784156 (1.000)3 (0.060) 3/90 NT 5.5% coding (971/1848 nt) secD SecYEG protein translocase auxillary subunit
?W3110S.gb = 427846 54 (1.090)coding (976/1848 nt) secD SecYEG protein translocase auxillary subunit
* ? W3110S.gb = 44379937 (0.660)3 (0.080) 3/66 NT 9.0% intergenic (‑60/‑108) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein
?W3110S.gb = 443811 37 (1.020)intergenic (‑72/‑96) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein
* ? W3110S.gb 533287 =75 (1.330)3 (0.060) 3/90 NT 5.3% coding (148/1782 nt) gcl glyoxylate carboligase
?W3110S.gb 533311 = 42 (0.850)coding (172/1782 nt) gcl glyoxylate carboligase
* ? W3110S.gb 566000 =NA (NA)68 (1.210) 42/102 NT 100% intergenic (+90/‑56) ybcD/insE DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE
?W3110S.gb = 576913 0 (0.000)coding (78/498 nt) ybcS predicted lysozyme
* ? W3110S.gb = 57847049 (0.870)5 (0.100) 5/94 NT 9.8% coding (348/411 nt) ybcV hypothetical protein
?W3110S.gb = 578482 47 (0.910)coding (336/411 nt) ybcV hypothetical protein
* ? W3110S.gb 597762 =50 (0.890)5 (0.090) 4/96 NT 9.1% coding (1061/1224 nt) cusB copper/silver efflux system, membrane fusion protein
?W3110S.gb 597786 = 53 (1.000)coding (1085/1224 nt) cusB copper/silver efflux system, membrane fusion protein
* ? W3110S.gb 655242 =NA (NA)4 (0.080) 4/94 NT NA coding (962/981 nt) insH IS5 element protein
?W3110S.gb 655260 = NA (NA)coding (980/981 nt) insH IS5 element protein
* ? W3110S.gb 713380 =51 (0.910)16 (0.310) 16/94 NT 26.9% intergenic (‑156/‑29) ybfF/seqA conserved hypothetical protein/regulatory protein for replication initiation
?W3110S.gb = 4125340 40 (0.770)coding (836/837 nt) dam DNA adenine methylase
* ? W3110S.gb = 71395466 (1.170)28 (0.500) 26/102 NT 29.2% coding (546/546 nt) seqA regulatory protein for replication initiation
?W3110S.gb 2809398 = 70 (1.240)intergenic (+63/‑28) ygaH/mprA predicted inner membrane protein/DNA‑binding transcriptional regulator
* ? W3110S.gb = 82725648 (0.850)3 (0.060) 3/92 NT 6.0% coding (419/1134 nt) ybhS predicted transporter subunit
?W3110S.gb = 827272 50 (0.990)coding (403/1134 nt) ybhS predicted transporter subunit
* ? W3110S.gb = 92512843 (0.760)3 (0.060) 3/90 NT 7.1% coding (1443/2277 nt) clpA ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
?W3110S.gb = 925139 41 (0.830)coding (1454/2277 nt) clpA ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity
* ? W3110S.gb = 95001962 (1.100)4 (0.080) 3/90 NT 8.0% intergenic (‑29/‑71) ycaN/ycaK predicted DNA‑binding transcriptional regulator/conserved hypothetical protein
?W3110S.gb = 950033 37 (0.750)intergenic (‑43/‑57) ycaN/ycaK predicted DNA‑binding transcriptional regulator/conserved hypothetical protein
* ? W3110S.gb 952526 =66 (1.170)4 (0.090) 4/82 NT 7.3% coding (1451/2283 nt) pflB pyruvate formate lyase I
?W3110S.gb 952557 = 48 (1.060)coding (1420/2283 nt) pflB pyruvate formate lyase I
* ? W3110S.gb = 95800548 (0.850)3 (0.060) 3/88 NT 6.0% intergenic (+129/‑70) ycaP/serC conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase
?W3110S.gb = 958017 52 (1.070)intergenic (+141/‑58) ycaP/serC conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase
* ? W3110S.gb 1209367 =23 (0.410)28 (0.730) 20/70 NT 66.8% coding (290/630 nt) ycfK hypothetical protein
?W3110S.gb 1211196 = 12 (0.310)pseudogene (37/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment
* ? W3110S.gb = 120938224 (0.430)31 (0.800) 23/70 NT 68.5% coding (305/630 nt) ycfK hypothetical protein
?W3110S.gb = 1211179 12 (0.310)pseudogene (54/537 nt) stfE ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment
* ? W3110S.gb = 122034266 (1.170)3 (0.060) 3/94 NT 5.2% coding (1438/1524 nt) ycgG conserved inner membrane protein
?W3110S.gb = 1220359 49 (0.940)coding (1455/1524 nt) ycgG conserved inner membrane protein
* ? W3110S.gb 1289322 =31 (0.550)4 (0.080) 4/94 NT 12.6% intergenic (‑123/+37) tyrT/purU tRNA‑Tyr/formyltetrahydrofolate hydrolase
?W3110S.gb 1289346 = 27 (0.520)intergenic (‑147/+13) tyrT/purU tRNA‑Tyr/formyltetrahydrofolate hydrolase
* ? W3110S.gb = 129397432 (0.570)3 (0.060) 3/84 NT 11.2% intergenic (+32/+112) galU/hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
?W3110S.gb = 1293984 21 (0.450)intergenic (+42/+102) galU/hns glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS
* ? W3110S.gb = 141456246 (0.820)3 (0.060) 3/90 NT 6.9% coding (388/1236 nt) intR integrase
?W3110S.gb = 1414578 41 (0.830)coding (372/1236 nt) intR integrase
* ? W3110S.gb = 1435237NA (NA)3 (0.060) 3/90 NT NA coding (152/591 nt) pinR predicted site‑specific recombinase
?W3110S.gb = 1435245 NA (NA)coding (144/591 nt) pinR predicted site‑specific recombinase
* ? W3110S.gb = 145547257 (1.010)4 (0.080) 3/96 NT 7.6% intergenic (‑116/‑169) maoC/paaA fused aldehyde dehydrogenase and enoyl‑CoA hydratase/predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
?W3110S.gb = 1455497 43 (0.810)intergenic (‑141/‑144) maoC/paaA fused aldehyde dehydrogenase and enoyl‑CoA hydratase/predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
* ? W3110S.gb = 163268720 (0.360)3 (0.060) 3/90 NT 12.6% intergenic (‑60/+29) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter
?W3110S.gb = 1632703 24 (0.480)intergenic (‑76/+13) ydfI/ydfJ predicted mannonate dehydrogenase/predicted transporter
* ? W3110S.gb 1636657 =NA (NA)5 (0.100) 3/92 NT 100% coding (905/963 nt) stfQ predicted side tail fibre assembly protein
?W3110S.gb 1636667 = 0 (0.000)coding (895/963 nt) stfQ predicted side tail fibre assembly protein
* ? W3110S.gb = 181833967 (1.190)5 (0.100) 3/92 NT 6.9% coding (511/750 nt) chbG conserved hypothetical protein
?W3110S.gb = 1818354 75 (1.480)coding (496/750 nt) chbG conserved hypothetical protein
* ? W3110S.gb = 189954948 (0.850)3 (0.060) 3/92 NT 7.0% coding (904/1365 nt) sdaA L‑serine deaminase I
?W3110S.gb = 1899562 37 (0.730)coding (917/1365 nt) sdaA L‑serine deaminase I
* ? W3110S.gb 1933441 =53 (0.940)3 (0.060) 3/94 NT 5.1% coding (847/1179 nt) purT phosphoribosylglycinamide formyltransferase 2
?W3110S.gb 1933468 = 63 (1.210)coding (874/1179 nt) purT phosphoribosylglycinamide formyltransferase 2
* ? W3110S.gb = 194161841 (0.730)4 (0.080) 3/90 NT 7.8% coding (290/972 nt) lpxM myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
?W3110S.gb = 1941633 59 (1.190)coding (275/972 nt) lpxM myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
* ? W3110S.gb 2018571 =6 (0.110)39 (0.740) 27/96 NT 87.4% coding (567/687 nt) fliH flagellar biosynthesis protein
?W3110S.gb 2519723 = NA (NA)intergenic (+33/‑54) nupC/insL nucleoside (except guanosine) transporter/predicted transposase
* ? W3110S.gb = 20185830 (0.000)56 (1.040) 42/98 NT 100% coding (579/687 nt) fliH flagellar biosynthesis protein
?W3110S.gb = 2521059 NA (NA)intergenic (+170/+30) insL/yfeA predicted transposase/predicted diguanylate cyclase
* ? W3110S.gb = 203743456 (1.000)3 (0.070) 3/78 NT 6.4% intergenic (+54/‑538) yedS/hchA ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone
?W3110S.gb = 2037442 45 (1.050)intergenic (+62/‑530) yedS/hchA ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone
* ? W3110S.gb 2044974 =48 (0.850)3 (0.060) 3/90 NT 6.9% coding (470/531 nt) yodB predicted cytochrome
?W3110S.gb 2044999 = 38 (0.770)coding (495/531 nt) yodB predicted cytochrome
* ? W3110S.gb = 210832620 (0.360)3 (0.060) 3/88 NT 12.7% coding (1038/1167 nt) wbbH O‑antigen polymerase
?W3110S.gb = 2108333 24 (0.490)coding (1031/1167 nt) wbbH O‑antigen polymerase
* ? W3110S.gb 2109295 =40 (0.710)4 (0.080) 3/90 NT 9.4% coding (69/1167 nt) wbbH O‑antigen polymerase
?W3110S.gb 2109315 = 42 (0.850)coding (49/1167 nt) wbbH O‑antigen polymerase
* ? W3110S.gb 2124135 =43 (0.760)3 (0.060) 3/92 NT 6.5% coding (982/1371 nt) cpsG phosphomannomutase
?W3110S.gb 2124152 = 48 (0.950)coding (965/1371 nt) cpsG phosphomannomutase
* ? W3110S.gb = 213962552 (0.920)4 (0.080) 4/92 NT 8.3% intergenic (‑245/‑414) wza/yegH lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins
?W3110S.gb = 2139640 42 (0.830)intergenic (‑260/‑399) wza/yegH lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins
* ? W3110S.gb 2155855 =47 (0.840)7 (0.140) 6/88 NT 14.5% intergenic (‑590/‑298) yegL/mdtA conserved hypothetical protein/multidrug efflux system, subunit A
?W3110S.gb 2155875 = 42 (0.870)intergenic (‑610/‑278) yegL/mdtA conserved hypothetical protein/multidrug efflux system, subunit A
* ? W3110S.gb = 216845051 (0.910)3 (0.060) 3/90 NT 6.2% coding (646/1362 nt) yegQ predicted peptidase
?W3110S.gb = 2168454 45 (0.910)coding (650/1362 nt) yegQ predicted peptidase
* ? W3110S.gb 2172308 =NA (NA)69 (1.250) 41/100 NT 100% pseudogene (1563/2041 nt) gatR DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
?W3110S.gb = 3920281 0 (0.000)coding (88/213 nt) cspA major cold shock protein
* ? W3110S.gb = 2173564NA (NA)84 (1.520) 51/100 NT 100% pseudogene (307/2041 nt)
pseudogene (307/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb 3920278 = 0 (0.000)coding (91/213 nt) cspA major cold shock protein
* ? W3110S.gb = 2173565NA (NA)43 (0.760) 36/102 NT 100% pseudogene (306/2041 nt)
pseudogene (306/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb = 3932933 0 (0.000)coding (222/1608 nt) dppA dipeptide transporter
* ? W3110S.gb 2175760 =34 (0.600)3 (0.060) 3/90 NT 9.0% coding (654/1356 nt) gatC galactitol‑specific enzyme IIC component of PTS
?W3110S.gb 2175793 = 31 (0.620)coding (621/1356 nt) gatC galactitol‑specific enzyme IIC component of PTS
* ? W3110S.gb 2222066 =64 (1.140)3 (0.060) 3/94 NT 5.2% coding (750/918 nt) yehZ predicted transporter subunit
?W3110S.gb 2222089 = 51 (0.980)coding (727/918 nt) yehZ predicted transporter subunit
* ? W3110S.gb = 226390840 (0.710)3 (0.060) 3/92 NT 6.7% coding (837/1692 nt) fruA fused fructose‑specific PTS enzyme IIB'BC components
?W3110S.gb = 2263914 47 (0.930)coding (831/1692 nt) fruA fused fructose‑specific PTS enzyme IIB'BC components
* ? W3110S.gb 2273885 =47 (0.840)3 (0.060) 3/96 NT 6.2% intergenic (+6/‑175) spr/rtn predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein
?W3110S.gb 2273917 = 47 (0.890)intergenic (+38/‑143) spr/rtn predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein
* ? W3110S.gb = 234880240 (0.710)5 (0.100) 3/90 NT 11.5% coding (38/3753 nt) yfaL adhesin
?W3110S.gb = 2348810 42 (0.850)coding (30/3753 nt) yfaL adhesin
* ? W3110S.gb 2358808 =64 (1.140)3 (0.060) 3/88 NT 5.7% coding (1492/1629 nt) glpA sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding
?W3110S.gb 2358839 = 44 (0.910)coding (1523/1629 nt) glpA sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding
* ? W3110S.gb = 236197268 (1.210)4 (0.080) 3/92 NT 5.7% coding (399/900 nt) yfaD conserved hypothetical protein
?W3110S.gb = 2361986 70 (1.380)coding (413/900 nt) yfaD conserved hypothetical protein
* ? W3110S.gb = 236508649 (0.870)3 (0.060) 3/92 NT 6.0% coding (1011/1218 nt) yfaW predicted enolase
?W3110S.gb = 2365110 50 (0.990)coding (987/1218 nt) yfaW predicted enolase
* ? W3110S.gb = 2412225NA (NA)68 (1.210) 46/102 NT 94.4% intergenic (‑55/‑782) insA/yfbQ IS1 element protein/predicted aminotransferase
?W3110S.gb = 3748807 4 (0.070)coding (176/984 nt) tnaB tryptophan transporter of low affinity
* ? W3110S.gb 2507021 =49 (0.870)4 (0.080) 3/90 NT 8.5% coding (446/858 nt) ypdC predicted DNA‑binding protein
?W3110S.gb 2507058 = 43 (0.870)coding (483/858 nt) ypdC predicted DNA‑binding protein
* ? W3110S.gb 2535433 =46 (0.820)3 (0.060) 3/88 NT 7.6% coding (190/2016 nt) ligA DNA ligase, NAD(+)‑dependent
?W3110S.gb 2535454 = 33 (0.680)coding (169/2016 nt) ligA DNA ligase, NAD(+)‑dependent
* ? W3110S.gb 2634886 =75 (1.330)7 (0.130) 5/96 NT 7.9% coding (1127/1473 nt) der predicted GTP‑binding protein
?W3110S.gb 2634908 = 93 (1.760)coding (1105/1473 nt) der predicted GTP‑binding protein
* ? W3110S.gb 2675410 =60 (1.070)3 (0.060) 3/96 NT 5.3% coding (72/999 nt) yphD predicted sugar transporter subunit
?W3110S.gb 2675430 = 50 (0.940)coding (52/999 nt) yphD predicted sugar transporter subunit
* ? W3110S.gb 2724856 =NA (NA)3 (0.060) 3/90 NT NA intergenic (‑12/+81) rrfG/rrlG 5S ribosomal RNA/23S ribosomal RNA
?W3110S.gb 2724880 = NA (NA)intergenic (‑36/+57) rrfG/rrlG 5S ribosomal RNA/23S ribosomal RNA
* ? W3110S.gb 2727225 =NA (NA)5 (0.100) 5/92 NT NA noncoding (616/2904 nt) rrlG 23S ribosomal RNA
?W3110S.gb 2727251 = NA (NA)noncoding (590/2904 nt) rrlG 23S ribosomal RNA
* ? W3110S.gb 2727295 =NA (NA)4 (0.080) 4/94 NT NA noncoding (546/2904 nt) rrlG 23S ribosomal RNA
?W3110S.gb 2727314 = NA (NA)noncoding (527/2904 nt) rrlG 23S ribosomal RNA
* ? W3110S.gb = 2728864NA (NA)5 (0.100) 4/94 NT NA noncoding (950/1542 nt) rrsG 16S ribosomal RNA
?W3110S.gb = 2728876 NA (NA)noncoding (938/1542 nt) rrsG 16S ribosomal RNA
* ? W3110S.gb = 2729852NA (NA)5 (0.100) 3/88 NT NA intergenic (‑39/+404) rrsG/clpB 16S ribosomal RNA/protein disaggregation chaperone
?W3110S.gb = 2729877 NA (NA)intergenic (‑64/+379) rrsG/clpB 16S ribosomal RNA/protein disaggregation chaperone
* ? W3110S.gb 2750759 =55 (0.980)3 (0.060) 3/94 NT 5.7% coding (309/1662 nt) recN recombination and repair protein
?W3110S.gb 2750777 = 48 (0.930)coding (327/1662 nt) recN recombination and repair protein
* ? W3110S.gb 2751068 =58 (1.030)3 (0.060) 3/92 NT 5.7% coding (618/1662 nt) recN recombination and repair protein
?W3110S.gb 2751097 = 47 (0.930)coding (647/1662 nt) recN recombination and repair protein
* ? W3110S.gb 2764547 =45 (0.800)3 (0.060) 3/90 NT 6.8% intergenic (‑115/‑27) yfjM/yfjN hypothetical protein/hypothetical protein
?W3110S.gb 2764565 = 43 (0.870)intergenic (‑133/‑9) yfjM/yfjN hypothetical protein/hypothetical protein
* ? W3110S.gb 2859968 =88 (1.560)3 (0.070) 3/82 NT 5.1% intergenic (‑48/‑118) ygbI/ygbJ predicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
?W3110S.gb 2860005 = 40 (0.880)intergenic (‑85/‑81) ygbI/ygbJ predicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain
* ? W3110S.gb = 288579166 (1.170)8 (0.160) 7/88 NT 12.2% coding (85/2667 nt) ygcB conserved hypothetical protein, member of DEAD box family
?W3110S.gb = 2885805 58 (1.190)coding (71/2667 nt) ygcB conserved hypothetical protein, member of DEAD box family
* ? W3110S.gb = 292313789 (1.580)5 (0.100) 4/90 NT 5.2% intergenic (‑368/+254) yqcC/syd conserved hypothetical protein/hypothetical protein
?W3110S.gb = 2923153 102 (2.050)intergenic (‑384/+238) yqcC/syd conserved hypothetical protein/hypothetical protein
* ? W3110S.gb = 293467367 (1.190)4 (0.080) 3/92 NT 6.3% coding (434/1776 nt) fucI L‑fucose isomerase
?W3110S.gb = 2934691 59 (1.160)coding (452/1776 nt) fucI L‑fucose isomerase
* ? W3110S.gb 2963582 =71 (1.260)4 (0.080) 3/90 NT 6.8% coding (230/795 nt) thyA thymidylate synthetase
?W3110S.gb 2963610 = 47 (0.950)coding (202/795 nt) thyA thymidylate synthetase
* ? W3110S.gb = 297062945 (0.800)4 (0.080) 3/94 NT 9.1% coding (377/1041 nt) tas predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase
?W3110S.gb = 2970640 38 (0.730)coding (388/1041 nt) tas predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase
* ? W3110S.gb 3008847 =62 (1.100)4 (0.080) 3/94 NT 6.8% coding (164/1386 nt) hyuA D‑stereospecific phenylhydantoinase
?W3110S.gb 3008865 = 52 (1.000)coding (182/1386 nt) hyuA D‑stereospecific phenylhydantoinase
* ? W3110S.gb = 303714648 (0.850)5 (0.100) 4/88 NT 10.8% coding (333/711 nt) dsbC protein disulfide isomerase II
?W3110S.gb = 3037153 41 (0.840)coding (326/711 nt) dsbC protein disulfide isomerase II
* ? W3110S.gb 3057720 =46 (0.820)4 (0.080) 3/88 NT 8.7% coding (262/660 nt) rpiA ribosephosphate isomerase, constitutive
?W3110S.gb 3057746 = 44 (0.910)coding (236/660 nt) rpiA ribosephosphate isomerase, constitutive
* ? W3110S.gb = 312456762 (1.100)5 (0.100) 3/92 NT 8.0% coding (612/1053 nt) glcE glycolate oxidase FAD binding subunit
?W3110S.gb = 3124578 59 (1.160)coding (601/1053 nt) glcE glycolate oxidase FAD binding subunit
* ? W3110S.gb = 32611330 (0.000)42 (0.810) 30/94 NT 100% intergenic (‑59/‑69) tdcE/insH pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein
?W3110S.gb 3262333 = 0 (0.000)coding (1183/1296 nt) tdcD propionate kinase/acetate kinase C, anaerobic
* ? W3110S.gb = 326551072 (1.280)4 (0.080) 3/90 NT 6.1% coding (374/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
?W3110S.gb = 3265514 60 (1.210)coding (370/990 nt) tdcB catabolic threonine dehydratase, PLP‑dependent
* ? W3110S.gb 3307000 =53 (0.940)4 (0.080) 3/92 NT 8.1% coding (716/1890 nt) deaD ATP‑dependent RNA helicase
?W3110S.gb 3307021 = 43 (0.850)coding (695/1890 nt) deaD ATP‑dependent RNA helicase
* ? W3110S.gb = 331606267 (1.190)3 (0.060) 3/88 NT 5.1% coding (1320/1488 nt) nusA transcription termination/antitermination L factor
?W3110S.gb = 3316080 54 (1.110)coding (1302/1488 nt) nusA transcription termination/antitermination L factor
* ? W3110S.gb 3325155 =81 (1.440)4 (0.080) 3/90 NT 5.3% coding (1636/1935 nt) ftsH protease, ATP‑dependent zinc‑metallo
?W3110S.gb 3325178 = 71 (1.430)coding (1613/1935 nt) ftsH protease, ATP‑dependent zinc‑metallo
* ? W3110S.gb = 332516081 (1.440)6 (0.120) 4/90 NT 7.8% coding (1631/1935 nt) ftsH protease, ATP‑dependent zinc‑metallo
?W3110S.gb = 3325171 71 (1.430)coding (1620/1935 nt) ftsH protease, ATP‑dependent zinc‑metallo
* ? W3110S.gb = 333264729 (0.520)3 (0.060) 3/88 NT 10.2% intergenic (‑57/+70) yhbE/rpmA conserved inner membrane protein/50S ribosomal subunit protein L27
?W3110S.gb = 3332659 28 (0.580)intergenic (‑69/+58) yhbE/rpmA conserved inner membrane protein/50S ribosomal subunit protein L27
* ? W3110S.gb 3340916 =74 (1.320)4 (0.080) 3/88 NT 6.2% coding (787/978 nt) yrbG predicted calcium/sodium:proton antiporter
?W3110S.gb 3340944 = 58 (1.190)coding (815/978 nt) yrbG predicted calcium/sodium:proton antiporter
* ? W3110S.gb = 335488647 (0.840)3 (0.060) 3/92 NT 6.0% coding (400/4554 nt) gltB glutamate synthase, large subunit
?W3110S.gb = 3354897 51 (1.000)coding (411/4554 nt) gltB glutamate synthase, large subunit
* ? W3110S.gb = 3468051NA (NA)3 (0.060) 3/96 NT NA intergenic (‑11/+183) rrlB/gltT 23S ribosomal RNA/tRNA‑Glu
?W3110S.gb = 3468073 NA (NA)intergenic (‑33/+161) rrlB/gltT 23S ribosomal RNA/tRNA‑Glu
* ? W3110S.gb = 356873429 (0.520)3 (0.060) 3/90 NT 10.4% coding (1330/2037 nt) yihQ alpha‑glucosidase
?W3110S.gb = 3568756 26 (0.520)coding (1352/2037 nt) yihQ alpha‑glucosidase
* ? W3110S.gb 3599312 =NA (NA)4 (0.080) 4/92 NT NA intergenic (‑150/+34) rrlA/alaT 23S ribosomal RNA/tRNA‑Ala
?W3110S.gb 3599345 = NA (NA)intergenic (‑183/+1) rrlA/alaT 23S ribosomal RNA/tRNA‑Ala
* ? W3110S.gb 3634827 =82 (1.460)4 (0.080) 4/86 NT 6.7% coding (429/951 nt) corA magnesium/nickel/cobalt transporter
?W3110S.gb 3634851 = 43 (0.910)coding (405/951 nt) corA magnesium/nickel/cobalt transporter
* ? W3110S.gb 3674466 =104 (1.850)5 (0.100) 3/92 NT 5.8% coding (1539/2022 nt) rep DNA helicase and single‑stranded DNA‑dependent ATPase
?W3110S.gb 3674494 = 69 (1.360)coding (1511/2022 nt) rep DNA helicase and single‑stranded DNA‑dependent ATPase
* ? W3110S.gb = 367681474 (1.320)4 (0.080) 3/88 NT 5.4% intergenic (+145/‑54) yifO/ppiC conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C
?W3110S.gb = 3676823 76 (1.570)intergenic (+154/‑45) yifO/ppiC conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C
* ? W3110S.gb 3690778 =NA (NA)4 (0.070) 4/100 NT NA noncoding (2202/2904 nt) rrlC 23S ribosomal RNA
?W3110S.gb 3690797 = NA (NA)noncoding (2183/2904 nt) rrlC 23S ribosomal RNA
* ? W3110S.gb = 371193179 (1.400)4 (0.080) 3/94 NT 5.4% coding (882/1890 nt) gidA glucose‑inhibited cell‑division protein
?W3110S.gb = 3711952 68 (1.310)coding (903/1890 nt) gidA glucose‑inhibited cell‑division protein
* ? W3110S.gb 3740269 =45 (0.800)3 (0.060) 3/96 NT 5.6% coding (196/1338 nt) yieG predicted inner membrane protein
?W3110S.gb 3740299 = 58 (1.100)coding (226/1338 nt) yieG predicted inner membrane protein
* ? W3110S.gb 3748799 =2 (0.040)55 (0.980) 41/102 NT 96.5% coding (184/984 nt) tnaB tryptophan transporter of low affinity
?W3110S.gb 4056222 = NA (NA)intergenic (‑564/+15) yrhB/insB hypothetical protein/IS1 transposase InsAB'
* ? W3110S.gb = 37505920 (0.000)46 (0.890) 34/94 NT 100% intergenic (‑104/‑69) tnaA/insH tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein
?W3110S.gb 3751792 = 0 (0.000)intergenic (+151/+116) insH/tnaC IS5 element protein/tryptophanase leader peptide
* ? W3110S.gb 3836344 =79 (1.400)4 (0.080) 3/92 NT 5.6% coding (95/1110 nt) rfaB UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
?W3110S.gb 3836373 = 64 (1.260)coding (124/1110 nt) rfaB UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase
* ? W3110S.gb 3842124 =73 (1.300)6 (0.120) 3/88 NT 10.0% coding (1020/1074 nt) rfaK lipopolysaccharide core biosynthesis
?W3110S.gb 3842149 = 45 (0.930)coding (1045/1074 nt) rfaK lipopolysaccharide core biosynthesis
* ? W3110S.gb 3847605 =60 (1.070)4 (0.080) 3/96 NT 6.5% intergenic (+14/‑261) htrL/kbl hypothetical protein/glycine C‑acetyltransferase
?W3110S.gb 3847630 = 58 (1.100)intergenic (+39/‑236) htrL/kbl hypothetical protein/glycine C‑acetyltransferase
* ? W3110S.gb 3873994 =86 (1.530)4 (0.080) 4/94 NT 5.2% coding (87/843 nt) yibA lyase containing HEAT‑repeat
?W3110S.gb 4016463 = 66 (1.270)pseudogene (68/246 nt) yrhC ECK3468:JW5678:b4552; hypothetical protein fragment
* ? W3110S.gb 3885567 =44 (0.780)5 (0.110) 4/86 NT 11.0% intergenic (+123/‑422) aldB/yiaW aldehyde dehydrogenase B/conserved inner membrane protein
?W3110S.gb 3885607 = 44 (0.930)intergenic (+163/‑382) aldB/yiaW aldehyde dehydrogenase B/conserved inner membrane protein
* ? W3110S.gb 3985587 =80 (1.420)5 (0.100) 5/90 NT 7.5% coding (148/531 nt) yhiF predicted DNA‑binding ranscriptional regulator
?W3110S.gb 3985608 = 52 (1.050)coding (127/531 nt) yhiF predicted DNA‑binding ranscriptional regulator
* ? W3110S.gb 4006294 =58 (1.030)3 (0.060) 3/94 NT 5.9% coding (336/1239 nt) yhiL hypothetical protein
?W3110S.gb 4006325 = 42 (0.810)coding (367/1239 nt) yhiL hypothetical protein
* ? W3110S.gb = 401076652 (0.920)3 (0.060) 3/92 NT 5.5% coding (952/1068 nt) yhiI predicted HlyD family secretion protein
?W3110S.gb = 4010799 57 (1.120)coding (985/1068 nt) yhiI predicted HlyD family secretion protein
* ? W3110S.gb 4140907 =77 (1.370)6 (0.120) 4/90 NT 8.7% coding (64/168 nt) yhfL conserved secreted peptide
?W3110S.gb 4140937 = 58 (1.170)coding (34/168 nt) yhfL conserved secreted peptide
* ? W3110S.gb = 419482765 (1.160)3 (0.060) 3/92 NT 5.1% coding (7/354 nt) rplR 50S ribosomal subunit protein L18
?W3110S.gb = 4194840 53 (1.040)coding (20/354 nt) rplR 50S ribosomal subunit protein L18
* ? W3110S.gb 4205007 =48 (0.850)3 (0.060) 3/96 NT 6.1% coding (205/1290 nt) rsmB 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent
?W3110S.gb 4205038 = 47 (0.890)coding (174/1290 nt) rsmB 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent
* ? W3110S.gb = 428145334 (0.600)4 (0.080) 3/92 NT 10.9% coding (393/465 nt) soxR DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing
?W3110S.gb = 4281463 35 (0.690)coding (403/465 nt) soxR DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing
* ? W3110S.gb = 434177957 (1.010)3 (0.060) 3/90 NT 5.2% intergenic (‑68/+69) adiC/adiY arginine:agmatin/DNA‑binding transcriptional activator
?W3110S.gb = 4341789 59 (1.190)intergenic (‑78/+59) adiC/adiY arginine:agmatin/DNA‑binding transcriptional activator
* ? W3110S.gb 4357242 =63 (1.120)5 (0.100) 5/90 NT 8.5% intergenic (+205/‑22) yjdJ/yjdK predicted acyltransferase with acyl‑CoA N‑acyltransferase domain/hypothetical protein
?W3110S.gb 4357265 = 52 (1.050)coding (2/297 nt) yjdK hypothetical protein
* ? W3110S.gb 4434710 =51 (0.910)3 (0.060) 3/90 NT 6.8% coding (165/1413 nt) cycA D‑alanine/D‑serine/glycine transporter
?W3110S.gb 4434732 = 37 (0.750)coding (187/1413 nt) cycA D‑alanine/D‑serine/glycine transporter
* ? W3110S.gb 4528145 =40 (0.710)3 (0.060) 3/84 NT 8.3% coding (632/1968 nt) yjhG predicted dehydratase
?W3110S.gb 4528170 = 33 (0.710)coding (607/1968 nt) yjhG predicted dehydratase
* ? W3110S.gb 4547364 =25 (0.440)9 (0.190) 9/84 NT 26.6% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
?W3110S.gb 4547678 = 29 (0.630)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
* ? W3110S.gb = 454737228 (0.500)9 (0.190) 8/84 NT 25.7% intergenic (+57/‑425) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
?W3110S.gb = 4547668 29 (0.630)intergenic (+353/‑129) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin
* ? W3110S.gb = 456110669 (1.230)6 (0.120) 4/92 NT 8.4% intergenic (‑104/‑569) yjiC/yjiD hypothetical protein/DNA replication/recombination/repair protein
?W3110S.gb = 4561117 69 (1.360)intergenic (‑115/‑558) yjiC/yjiD hypothetical protein/DNA replication/recombination/repair protein