mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 96,480 | T→G | 35.1% | intergenic (+121/‑72) | cynT → / → CJ019_00104 | Carbonic anhydrase 1/hypothetical protein |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 125,463 | A→C | 44.2% | T309P (ACC→CCC) | CJ019_00134 → | hypothetical protein |
| RA | 140,311 | A→C | 19.8% | I358S (ATT→AGT) | CJ019_00149 ← | hypothetical protein |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 188,028 | A→C | 24.0% | T963P (ACC→CCC) | CJ019_00185 → | hypothetical protein |
| RA | 188,040 | A→C | 30.0% | T967P (ACC→CCC) | CJ019_00185 → | hypothetical protein |
| RA | 223,541 | T→G | 18.9% | V52G (GTC→GGC) | oprM → | Outer membrane protein OprM |
| RA | 275,958 | A→C | 23.1% | T121P (ACC→CCC) | betT2 → | Osmo‑dependent choline transporter BetT2 |
| RA | 305,344 | A→C | 19.5% | G27G (GGT→GGG) | ydeP_1 ← | Protein YdeP |
| RA | 305,368 | C→G | 25.2% | K19N (AAG→AAC) | ydeP_1 ← | Protein YdeP |
| RA | 336,468 | T→G | 25.9% | K9N (AAA→AAC) | CJ019_00309 ← | hypothetical protein |
| RA | 382,484 | T→G | 28.2% | S14A (TCC→GCC) | soxD → | Sarcosine oxidase subunit delta |
| RA | 395,021 | A→C | 32.6% | P185P (CCT→CCG) | yibF ← | putative GST‑like protein YibF |
| RA | 444,535 | A→C | 27.6% | L130V (TTG→GTG) | hdfR_1 ← | HTH‑type transcriptional regulator HdfR |
| RA | 491,817 | T→A | 5.1% | L81M (TTG→ATG) | uvrY → | Response regulator UvrY |
| RA | 495,400 | A→G | 100% | V213V (GTA→GTG) | CJ019_00444 → | hypothetical protein |
| RA | 502,322 | T→G | 28.0% | intergenic (‑262/‑106) | estP ← / → trpG | Esterase EstP/Anthranilate synthase component 2 |
| RA | 832,610 | T→A | 8.5% | E43D (GAA→GAT) | prs ← | Ribose‑phosphate pyrophosphokinase |
| RA | 930,465 | A→C | 21.0% | V2736G (GTG→GGG) | CJ019_00881 ← | hypothetical protein |
| RA | 967,684 | C→T | 10.8% | A9V (GCG→GTG) | CJ019_00912 → | hypothetical protein |
| RA | 996,842 | C→A | 5.6% | A100D (GCC→GAC) | fecI_5 → | putative RNA polymerase sigma factor FecI |
| RA | 1,005,066 | A→C | 32.2% | D143A (GAC→GCC) | prfC → | Peptide chain release factor RF3 |
| RA | 1,025,541 | T→G | 24.7% | G176G (GGT→GGG) | nylB → | 6‑aminohexanoate‑dimer hydrolase |
| RA | 1,138,117 | C→T | 5.7% | P90P (CCG→CCA) | pigA_1 ← | Heme oxygenase PigA |
| RA | 1,138,494 | T→G | 39.0% | intergenic (‑108/+33) | pigA_1 ← / ← hemR | Heme oxygenase PigA/Hemin receptor |
| RA | 1,188,687 | A→C | 60.3% | S41R (AGC→CGC) | CJ019_01117 → | hypothetical protein |
| RA | 1,226,581 | G→T | 9.3% | H53N (CAC→AAC) | glpR ← | Glycerol‑3‑phosphate regulon repressor |
| RA | 1,233,532 | T→G | 12.6% | G360G (GGT→GGG) | nasC → | Assimilatory nitrate reductase catalyticsubunit |
| RA | 1,242,612 | G→T | 5.4% | M152I (ATG→ATT) | bvgA_1 → | Virulence factors putative positivetranscription regulator BvgA |
| RA | 1,308,712 | A→C | 26.7% | T32P (ACG→CCG) | CJ019_01226 → | hypothetical protein |
| RA | 1,418,659 | C→T | 5.1% | intergenic (+7/‑47) | CJ019_01336 → / → CJ019_01337 | hypothetical protein/hypothetical protein |
| RA | 1,474,145 | C→T | 8.1% | R216H (CGC→CAC) | rhlB_2 ← | ATP‑dependent RNA helicase RhlB |
| RA | 1,508,654 | T→G | 33.2% | L178R (CTG→CGG) | ftsI → | Peptidoglycan D,D‑transpeptidase FtsI |
| RA | 1,521,697 | A→C | 22.5% | T328P (ACC→CCC) | ftsA → | Cell division protein FtsA |
| RA | 1,528,308 | A→C | 29.1% | P87P (CCA→CCC) | argJ → | Arginine biosynthesis bifunctional protein ArgJ |
| RA | 1,544,643 | T→G | 22.3% | Q412P (CAG→CCG) | pykA ← | Pyruvate kinase II |
| RA | 1,584,539 | A→C | 20.0% | G137G (GGT→GGG) | rhaS_1 ← | HTH‑type transcriptional activator RhaS |
| RA | 1,626,923 | C→T | 6.9% | S272S (AGC→AGT) | lepB → | Signal peptidase I |
| RA | 1,670,696 | A→C | 21.3% | intergenic (+33/‑98) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,671,699 | C→G | 11.7% | intergenic (+125/+62) | CJ019_01570 → / ← CJ019_01571 | hypothetical protein/hypothetical protein |
| RA | 1,718,463 | T→G | 32.8% | Q65P (CAG→CCG) | CJ019_01614 ← | hypothetical protein |
| RA | 1,729,011 | T→G | 25.8% | Q190P (CAG→CCG) | csdA ← | Cysteine desulfurase CsdA |
| RA | 1,831,753 | T→G | 27.9% | T158P (ACG→CCG) | CJ019_01748 ← | NAD(P)H dehydrogenase (quinone) |
| RA | 1,891,999 | A→C | 34.7% | intergenic (+13/‑507) | PP_RS08755 → / → napA | tRNA‑Asp/Periplasmic nitrate reductase |
| RA | 1,892,029 | G→C | 24.5% | intergenic (+43/‑477) | PP_RS08755 → / → napA | tRNA‑Asp/Periplasmic nitrate reductase |
| RA | 1,915,389 | C→T | 5.3% | R304H (CGC→CAC) | potA_3 ← | Spermidine/putrescine import ATP‑binding proteinPotA |
| RA | 1,949,630 | G→A | 6.3% | P54P (CCG→CCA) | CJ019_01863 → | hypothetical protein |
| RA | 2,023,309 | T→C | 6.0% | R645R (CGT→CGC) | pglF → | UDP‑N‑acetyl‑alpha‑D‑glucosamine C6 dehydratase |
| RA | 2,037,989 | G→A | 6.3% | S49N (AGC→AAC) | CJ019_01933 → | hypothetical protein |
| RA | 2,094,808 | A→C | 61.6% | L186R (CTG→CGG) | CJ019_01995 ← | hypothetical protein |
| RA | 2,134,732 | T→G | 23.3% | L471V (TTG→GTG) | comEC → | ComE operon protein 3 |
| RA | 2,220,656 | A→C | 25.6% | D38A (GAC→GCC) | tmk_2 → | Thymidylate kinase |
| RA | 2,266,996 | T→G | 15.8% | N143T (AAC→ACC) | CJ019_02153 ← | putative HTH‑type transcriptional regulator |
| RA | 2,331,148 | Δ1 bp | 7.1% | intergenic (‑30/‑117) | cynR_1 ← / → ybhH | HTH‑type transcriptional regulator CynR/Putative isomerase YbhH |
| RA | 2,391,010 | T→G | 36.5% | E566D (GAA→GAC) | bvgS ← | Virulence sensor protein BvgS |
| RA | 2,391,020 | T→G | 40.8% | Q563P (CAG→CCG) | bvgS ← | Virulence sensor protein BvgS |
| RA | 2,491,272 | A→C | 43.3% | H33P (CAC→CCC) | iutA → | Ferric aerobactin receptor |
| RA | 2,503,721 | T→G | 14.7% | D356A (GAC→GCC) | copA_2 ← | Copper resistance protein A |
| RA | 2,514,700 | C→T | 5.9% | A965V (GCC→GTC) | CJ019_02369 → | hypothetical protein |
| RA | 2,612,443 | C→T | 5.5% | intergenic (‑89/‑75) | CJ019_02468 ← / → CJ019_02469 | hypothetical protein/hypothetical protein |
| RA | 2,663,200 | C→T | 5.8% | K730K (AAG→AAA) | acnB ← | Aconitate hydratase B |
| RA | 2,663,203 | G→A | 5.7% | G729G (GGC→GGT) | acnB ← | Aconitate hydratase B |
| RA | 2,663,206 | G→C | 5.2% | A728A (GCC→GCG) | acnB ← | Aconitate hydratase B |
| RA | 2,663,212 | G→A | 5.7% | R726R (CGC→CGT) | acnB ← | Aconitate hydratase B |
| RA | 2,663,239 | C→G | 6.7% | S717S (TCG→TCC) | acnB ← | Aconitate hydratase B |
| RA | 2,663,248 | G→A | 6.4% | F714F (TTC→TTT) | acnB ← | Aconitate hydratase B |
| RA | 2,696,303 | T→C | 7.1% | S135P (TCG→CCG) | CJ019_02551 → | hypothetical protein |
| RA | 2,831,985 | G→A | 5.5% | R199C (CGC→TGC) | frp ← | NADPH‑flavin oxidoreductase |
| RA | 2,921,458 | C→T | 5.9% | C556C (TGC→TGT) | rep_1 → | ATP‑dependent DNA helicase Rep |
| RA | 2,954,385 | A→C | 21.5% | V298G (GTG→GGG) | fatB ← | Ferric‑anguibactin‑binding protein FatB |
| RA | 3,004,952 | T→G | 27.1% | M319R (ATG→AGG) | bcsG → | Cellulose biosynthesis protein BcsG |
| RA | 3,061,793 | G→A | 100% | S592N (AGC→AAC) | qedA_2 → | Quinoprotein alcohol dehydrogenase (cytochromec) |
| RA | 3,130,135 | C→T | 6.7% | R94C (CGC→TGC) | livF_3 → | High‑affinity branched‑chain amino acidtransport ATP‑binding protein LivF |
| RA | 3,202,757 | A→T | 21.0% | V308V (GTA→GTT) | hcf136_2 → | Ycf48‑like protein |
| RA | 3,244,507 | T→G | 24.8% | L97R (CTG→CGG) | ureF → | Urease accessory protein UreF |
| RA | 3,267,810 | T→G | 34.3% | L171V (TTG→GTG) | eamA → | putative amino‑acid metabolite efflux pump |
| RA | 3,312,451 | A→C | 37.6% | L251R (CTG→CGG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,323,335 | G→T | 5.0% | F183L (TTC→TTA) | CJ019_03122 ← | Carboxynorspermidine synthase |
| RA | 3,421,089 | G→C | 5.9% | A661P (GCA→CCA) | CJ019_03241 → | hypothetical protein |
| RA | 3,432,242 | A→C | 25.9% | E36A (GAG→GCG) | gpFI → | Putative prophage major tail sheath protein |
| RA | 3,440,343 | A→C | 100% | S18R (AGC→CGC) | CJ019_03266 → | hypothetical protein |
| RA | 3,496,362 | A→G | 5.8% | intergenic (‑290/+704) | CJ019_03314 ← / ← CJ019_03315 | hypothetical protein/hypothetical protein |
| RA | 3,592,468 | C→A | 5.6% | W98C (TGG→TGT) | hcaD ← | 3‑phenylpropionate/cinnamic acid dioxygenase ferredoxin‑‑NAD( ) reductase component |
| RA | 3,626,117 | A→C | 50.3% | T178P (ACC→CCC) | hcf136_3 → | Ycf48‑like protein |
| RA | 3,793,904 | A→C | 30.8% | intergenic (+57/+22) | CJ019_03601 → / ← argD_3 | hypothetical protein/Acetylornithine/succinyldiaminopimelateaminotrans ferase |
| RA | 3,891,748 | G→C | 8.2% | L346V (CTG→GTG) | CJ019_03683 ← | hypothetical protein |
| RA | 3,912,361 | A→C | 24.1% | E833A (GAG→GCG) | mexB_2 → | Multidrug resistance protein MexB |
| RA | 3,934,892 | A→C | 35.9% | V100G (GTG→GGG) | CJ019_03719 ← | hypothetical protein |
| RA | 3,957,351 | G→A | 100% | H100Y (CAC→TAC) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 4,135,607 | A→C | 45.7% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,612 | T→G | 46.2% | W34G (TGG→GGG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,150,909 | G→T | 8.8% | V205V (GTC→GTA) | cmpR_5 ← | HTH‑type transcriptional activator CmpR |
| RA | 4,200,802 | T→A | 6.5% | M207L (ATG→TTG) | CJ019_03944 ← | hypothetical protein |
| RA | 4,243,006 | G→A | 5.1% | A222A (GCC→GCT) | FCS1 ← | Trans‑feruloyl‑CoA synthase FCS1 |
| RA | 4,245,134 | A→C | 23.8% | L182V (TTG→GTG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,145 | A→C | 45.6% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,257,309 | C→T | 100% | intergenic (‑238/‑44) | CJ019_03991 ← / → tsaM1 | putative ABC transporter ATP‑binding protein/Toluene‑4‑sulfonate monooxygenase systemiron‑sulfur subunit TsaM1 |
| RA | 4,257,313 | A→G | 11.5% | intergenic (‑242/‑40) | CJ019_03991 ← / → tsaM1 | putative ABC transporter ATP‑binding protein/Toluene‑4‑sulfonate monooxygenase systemiron‑sulfur subunit TsaM1 |
| RA | 4,292,547 | T→G | 22.4% | intergenic (+57/+34) | CJ019_04026 → / ← CJ019_04027 | hypothetical protein/hypothetical protein |
| RA | 4,349,843 | T→G | 24.7% | V239G (GTC→GGC) | btuD_8 → | Vitamin B12 import ATP‑binding protein BtuD |
| RA | 4,369,407 | A→C | 18.5% | P36P (CCT→CCG) | CJ019_04114 ← | hypothetical protein |
| RA | 4,690,862 | T→G | 41.6% | L281R (CTG→CGG) | yhaJ_2 → | HTH‑type transcriptional regulator YhaJ |
| RA | 4,749,286 | T→G | 23.0% | S294A (TCG→GCG) | macB → | Macrolide export ATP‑binding/permease proteinMacB |
| RA | 4,750,123 | C→T | 5.7% | Q573* (CAG→TAG) | macB → | Macrolide export ATP‑binding/permease proteinMacB |
| RA | 4,805,741 | A→T | 52.2% | intergenic (+161/‑588) | dsbG → / → CJ019_04513 | Thiol:disulfide interchange protein DsbG/hypothetical protein |
| RA | 4,824,960 | C→T | 6.3% | R18H (CGC→CAC) | lgrB_2 ← | Linear gramicidin synthase subunit B |
| RA | 4,845,478 | T→G | 46.3% | intergenic (+47/+72) | apt → / ← recR | Adenine phosphoribosyltransferase/Recombination protein RecR |
| RA | 4,874,567 | A→C | 31.2% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,874,607 | A→C | 34.0% | intergenic (+53/‑134) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,912,863 | T→G | 39.3% | L480R (CTG→CGG) | CJ019_04608 → | hypothetical protein |
| RA | 4,927,692 | A→C | 53.5% | W194G (TGG→GGG) | srp54 ← | Signal recognition particle 54 kDa protein |
| RA | 4,942,999 | A→C | 39.6% | L51R (CTG→CGG) | fliN ← | Flagellar motor switch protein FliN |
| RA | 5,099,788 | T→G | 23.0% | H717P (CAC→CCC) | CJ019_04795 ← | putative protein |
| RA | 5,101,424 | T→G | 11.3% | T172P (ACC→CCC) | CJ019_04795 ← | putative protein |
| RA | 5,182,326 | A→C | 16.5% | L133V (TTG→GTG) | CJ019_04876 ← | hypothetical protein |
| RA | 5,298,739 | T→G | 17.8% | D780A (GAC→GCC) | recC ← | RecBCD enzyme subunit RecC |
| RA | 5,369,384 | A→C | 21.6% | intergenic (‑118/+81) | dnaJ ← / ← dnaK_1 | Chaperone protein DnaJ/Chaperone protein DnaK |
| RA | 5,436,027 | T→A | 5.3% | Q128L (CAG→CTG) | aidB ← | Putative acyl‑CoA dehydrogenase AidB |
| RA | 5,449,130 | A→C | 26.3% | W97G (TGG→GGG) | CJ019_05126 ← | hypothetical protein |
| RA | 5,468,207 | G→A | 5.3% | S138S (AGC→AGT) | proA_2 ← | Gamma‑glutamyl phosphate reductase |
| RA | 5,486,639 | A→C | 26.8% | A396A (GCT→GCG) | cysG_2 ← | Siroheme synthase |
| RA | 5,499,534 | T→G | 29.8% | S179A (TCG→GCG) | CJ019_05176 → | hypothetical protein |
| RA | 5,633,108 | T→A | 5.4% | L124Q (CTG→CAG) | CJ019_05291 → | hypothetical protein |
| RA | 5,652,716 | G→T | 5.1% | Q314H (CAG→CAT) | COQ3_2 → | Ubiquinone biosynthesis O‑methyltransferase, mitochondrial |
| RA | 5,689,794 | T→G | 46.4% | R228R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,689,824 | T→G | 50.2% | R238R (CGT→CGG) | pyrC' → | Dihydroorotase‑like protein |
| RA | 5,757,234 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,853,869 | T→G | 27.9% | Q561H (CAA→CAC) | CJ019_05481 ← | hypothetical protein |
| RA | 5,859,001 | T→G | 22.0% | T329P (ACC→CCC) | cadA_2 ← | Cadmium‑transporting ATPase |
| RA | 5,890,917 | C→T | 6.6% | A96T (GCC→ACC) | sbp_2 ← | Sulfate‑binding protein |
| RA | 5,975,253 | A→C | 32.7% | Q688P (CAG→CCG) | sasA_19 → | Adaptive‑response sensory‑kinase SasA |
| RA | 6,016,987 | A→C | 52.5% | intergenic (+67/+77) | puuB_8 → / ← CJ019_05632 | Gamma‑glutamylputrescine oxidoreductase/hypothetical protein |
| RA | 6,021,514 | T→G | 38.4% | S60R (AGC→CGC) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,033,064 | G→C | 16.3% | intergenic (‑249/+45) | CJ019_00572 ← / ← pyrE | IS110 family transposase ISPpu10/Orotate phosphoribosyltransferase |
| RA | 6,107,366 | A→G | 11.3% | N219D (AAC→GAC) | clsA → | Major cardiolipin synthase ClsA |
| RA | 6,108,673 | C→G | 8.1% | Q249H (CAG→CAC) | COQ3_3 ← | Ubiquinone biosynthesis O‑methyltransferase, mitochondrial |
| RA | 6,126,398 | A→T | 23.8% | H430Q (CAT→CAA) | copA_4 ← | Copper resistance protein A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | KT2440 | 87995 | 88052 | 58 | 22 [21] | [17] 22 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | KT2440 | 161217 | 161439–161315 | 99–223 | 22 [20] | [21] 22 | [uctC_1] | [uctC_1] |
| * | * | ÷ | KT2440 | 277577 | 277690 | 114 | 24 [21] | [18] 22 | [betT2]–[tauD_2] | [betT2],[tauD_2] |
| * | * | ÷ | KT2440 | 517196 | 517436 | 241 | 22 [21] | [21] 24 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | KT2440 | 674245 | 674414 | 170 | 22 [20] | [21] 31 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | KT2440 | 1304728 | 1304868 | 141 | 22 [21] | [21] 24 | [rapA] | [rapA] |
| * | * | ÷ | KT2440 | 1376286 | 1376321 | 36 | 23 [21] | [15] 25 | CJ019_01289 | hypothetical protein |
| * | * | ÷ | KT2440 | 1396583 | 1396700 | 118 | 23 [21] | [19] 23 | [CJ019_01313]–[mcpU_1] | [CJ019_01313],[mcpU_1] |
| * | * | ÷ | KT2440 | 1457206 | 1457329 | 124 | 25 [19] | [21] 22 | [algL]–[algX] | [algL],[algX] |
| * | * | ÷ | KT2440 | 1585616 | 1585723 | 108 | 22 [18] | [19] 27 | CJ019_01493 | hypothetical protein |
| * | * | ÷ | KT2440 | 1697661 | 1697780 | 120 | 23 [16] | [21] 22 | [CJ019_01593]–[CJ019_01594] | [CJ019_01593],[CJ019_01594] |
| * | * | ÷ | KT2440 | 1914569 | 1914641 | 73 | 23 [21] | [21] 23 | [ppsC_1] | [ppsC_1] |
| * | * | ÷ | KT2440 | 2234280 | 2234445 | 166 | 22 [20] | [21] 24 | [gltX] | [gltX] |
| * | * | ÷ | KT2440 | 2288810 | 2288936 | 127 | 24 [19] | [21] 23 | [CJ019_02171] | [CJ019_02171] |
| * | * | ÷ | KT2440 | 2467192 | 2467225 | 34 | 35 [20] | [20] 40 | CJ019_02325/tal | hypothetical protein/Transaldolase |
| * | * | ÷ | KT2440 | 2830096 | 2830298 | 203 | 24 [21] | [21] 23 | [gabD1]–[namA_3] | [gabD1],[namA_3] |
| * | * | ÷ | KT2440 | 3145279 | 3145406 | 128 | 25 [20] | [21] 27 | livH_4 | High‑affinity branched‑chain amino acidtransport system permease protein LivH |
| * | * | ÷ | KT2440 | 3280231 | 3280368 | 138 | 22 [20] | [20] 22 | [CJ019_03085]–[xthA_2] | [CJ019_03085],[xthA_2] |
| * | * | ÷ | KT2440 | 3459849 | 3459932 | 84 | 22 [21] | [21] 22 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | KT2440 | 3769394 | 3769497 | 104 | 22 [20] | [21] 24 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | KT2440 | 3839292 | 3839411 | 120 | 22 [21] | [19] 22 | [argP_2] | [argP_2] |
| * | * | ÷ | KT2440 | 4163771 | 4163884 | 114 | 24 [21] | [21] 22 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | KT2440 | 4346803 | 4346856 | 54 | 30 [16] | [21] 23 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | KT2440 | 4523617 | 4523768 | 152 | 22 [19] | [21] 23 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | KT2440 | 4668911 | 4669054 | 144 | 22 [21] | [18] 24 | [btuB_4]–[chrR] | [btuB_4],[chrR] |
| * | * | ÷ | KT2440 | 4734421 | 4734517 | 97 | 22 [21] | [18] 22 | gltA/CJ019_04468 | Citrate synthase/hypothetical protein |
| * | * | ÷ | KT2440 | 4790216 | 4790330 | 115 | 22 [21] | [21] 22 | [qseC_3] | [qseC_3] |
| * | * | ÷ | KT2440 | 4801704 | 4802192 | 489 | 22 [19] | [20] 24 | CJ019_04509/dsbD_2 | hypothetical protein/Thiol:disulfide interchange protein DsbD |
| * | * | ÷ | KT2440 | 4944708 | 4944903 | 196 | 22 [19] | [21] 23 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | KT2440 | 5156292 | 5156458 | 167 | 22 [18] | [21] 25 | [CJ019_04852] | [CJ019_04852] |
| * | * | ÷ | KT2440 | 5188667 | 5188790 | 124 | 22 [21] | [19] 22 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | KT2440 | 5193430 | 5193525 | 96 | 22 [21] | [21] 22 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | KT2440 | 5250619 | 5250729 | 111 | 23 [20] | [21] 22 | [CJ019_04947]–[CJ019_04948] | [CJ019_04947],[CJ019_04948] |
| * | * | ÷ | KT2440 | 5551606 | 5551794 | 189 | 22 [21] | [21] 23 | [purA] | [purA] |
| * | * | ÷ | KT2440 | 5646783 | 5646889 | 107 | 29 [21] | [18] 23 | [CJ019_05303] | [CJ019_05303] |
| * | * | ÷ | KT2440 | 5810671 | 5810983 | 313 | 24 [21] | [20] 24 | [pilT] | [pilT] |
| * | * | ÷ | KT2440 | 5891541 | 5891652 | 112 | 22 [20] | [20] 22 | CJ019_05517/czcA_3 | hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA |
| * | * | ÷ | KT2440 | 5896938 | 5897040 | 103 | 22 [20] | [18] 26 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | KT2440 | 1291233 = | NA (NA) | 5 (0.080) | 5/230 | NT | NA | intergenic (+39/+390) | CJ019_01212/CJ019_01213 | IS110 family transposase ISPpu9/hypothetical protein |
| ? | KT2440 | = 1291580 | NA (NA) | intergenic (+386/+43) | CJ019_01212/CJ019_01213 | IS110 family transposase ISPpu9/hypothetical protein | |||||
| * | ? | KT2440 | 4918800 = | 0 (0.000) | 69 (1.120) | 40/228 | NT | 100% | coding (7/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | = 5539492 | NA (NA) | intergenic (‑358/+71) | CJ019_03622/rlmB | IS110 family transposase ISPpu9/23S rRNA (guanosine‑2'‑O‑)‑methyltransferaseRlmB | |||||
| * | ? | KT2440 | = 4918801 | 0 (0.000) | 59 (0.950) | 31/230 | NT | 100% | coding (6/789 nt) | soj_1 | Sporulation initiation inhibitor protein Soj |
| ? | KT2440 | 5216408 = | NA (NA) | intergenic (‑50/+386) | rhaS_5/CJ019_01212 | HTH‑type transcriptional activator RhaS/IS110 family transposase ISPpu9 | |||||
| * | ? | KT2440 | = 5982606 | 41 (0.650) | 4 (0.070) | 4/218 | NT | 9.9% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | KT2440 | 5982798 = | 35 (0.600) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||