mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 125,083 | C→T | 37.6% | Y689Y (TAC→TAT) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 125,387 | C→T | 100% | Q791* (CAG→TAG) | aceE → | pyruvate dehydrogenase E1 component |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 371,064 | C→G | 9.4% | A263G (GCC→GGC) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| RA | 371,067 | T→A | 9.7% | I264N (ATT→AAT) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| RA | 371,070 | C→G | 8.0% | A265G (GCC→GGC) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| RA | 496,171 | C→T | 7.0% | A351V (GCG→GTG) | htpG → | chaperone protein HtpG |
| RA | 657,531 | T→G | 7.1% | intergenic (+30/+24) | cspE → / ← crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| RA | 657,533 | A→T | 6.9% | intergenic (+32/+22) | cspE → / ← crcB | transcription antiterminator and regulator of RNA stability/F(‑) channel |
| RA | 696,328 | A→C | 12.9% | intergenic (+52/+102) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase/tRNA‑Gln |
| RA | 696,470 | C→T | 100% | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 710,170 | C→T | 9.6% | intergenic (+54/+30) | chiQ → / ← fur | lipoprotein ChiQ/DNA‑binding transcriptional dual regulator Fur |
| RA | 710,173 | A→G | 12.0% | intergenic (+57/+27) | chiQ → / ← fur | lipoprotein ChiQ/DNA‑binding transcriptional dual regulator Fur |
| RA | 710,595 | G→T | 100% | P18T (CCT→ACT) | fur ← | DNA‑binding transcriptional dual regulator Fur |
| RA | 733,768 | G→A | 5.7% | V1396M (GTG→ATG) | rhsC → | rhs element protein RhsC |
| RA | 759,250 | G→T | 100% | R182L (CGC→CTC) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 1,018,983 | A→T | 9.5% | intergenic (+46/+30) | matP → / ← ompA | macrodomain Ter protein/outer membrane porin A |
| RA | 1,196,220 | C→T | 100% | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | 100% | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | insH21 | insH21 | |
| RA | 1,498,892 | A→T | 8.2% | intergenic (+17/‑46) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 8.2% | intergenic (+19/‑44) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 8.3% | intergenic (+21/‑42) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,563,410 | C→G | 9.9% | G775A (GGA→GCA) | dosP ← | oxygen‑sensing c‑di‑GMP phosphodiesterase DosP |
| RA | 1,778,367 | C→G | 8.0% | intergenic (+20/+23) | ydiO → / ← ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP |
| RA | 1,850,715 | Δ1 bp | 11.4% | intergenic (+22/‑145) | sppA → / → ansA | protease IV, a signal peptide peptidase/L‑asparaginase 1 |
| RA | 1,850,719:1 | +T | 12.5% | intergenic (+26/‑141) | sppA → / → ansA | protease IV, a signal peptide peptidase/L‑asparaginase 1 |
| RA | 1,864,758 | G→A | 9.9% | intergenic (+24/+24) | yeaD → / ← yeaE | putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE |
| RA | 1,864,763 | A→T | 9.5% | intergenic (+29/+19) | yeaD → / ← yeaE | putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE |
| RA | 1,864,768 | T→C | 11.2% | intergenic (+34/+14) | yeaD → / ← yeaE | putative aldose 1‑epimerase YeaD/methylglyoxal reductase YeaE |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,173,359 | Δ1 bp | 11.9% | pseudogene (920/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,311,616 | C→T | 7.0% | intergenic (‑82/+30) | ftp ← / ← ompC | FAD:protein FMN transferase/outer membrane porin C |
| RA | 2,311,619 | A→G | 8.1% | intergenic (‑85/+27) | ftp ← / ← ompC | FAD:protein FMN transferase/outer membrane porin C |
| RA | 2,402,140 | G→A | 44.6% | P569L (CCG→CTG) | nuoC ← | NADH:quinone oxidoreductase subunit CD |
| RA | 2,403,813 | C→T | 10.5% | W11* (TGG→TGA) | nuoC ← | NADH:quinone oxidoreductase subunit CD |
| RA | 2,414,689 | C→G | 9.5% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase/phosphate acetyltransferase |
| RA | 2,561,205 | A→T | 9.9% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
| RA | 2,561,206 | A→T | 9.1% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM |
| RA | 2,641,353 | T→A | 49.3% | E151V (GAA→GTA) ‡ | ispG ← | (E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) |
| RA | 2,641,354 | C→A | 50.5% | E151* (GAA→TAA) ‡ | ispG ← | (E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) |
| RA | 2,661,969 | C→G | 100% | V55L (GTT→CTT) | iscR ← | DNA‑binding transcriptional dual regulator IscR |
| RA | 2,761,620 | T→G | 7.2% | K641Q (AAG→CAG) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 2,761,623 | C→A | 6.9% | V640L (GTA→TTA) | abpB ← | CP4‑57 prophage; putative helicase YfjK |
| RA | 3,041,632 | T→A | 100% | V107E (GTG→GAG) | ygfZ → | folate‑binding protein |
| RA | 3,259,122 | T→G | 8.6% | E176D (GAA→GAC) ‡ | tdcG ← | L‑serine deaminase III |
| RA | 3,259,124 | C→G | 8.1% | E176Q (GAA→CAA) ‡ | tdcG ← | L‑serine deaminase III |
| RA | 3,259,126 | C→A | 9.7% | G175V (GGT→GTT) | tdcG ← | L‑serine deaminase III |
| RA | 3,271,825 | T→A | 8.7% | intergenic (‑55/+42) | garK ← / ← garR | glycerate 2‑kinase 1/tartronate semialdehyde reductase |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,637,645:1 | +T | 100% | coding (4/1500 nt) | pitA → | metal phosphate:H(+) symporter PitA |
| RA | 3,720,802 | A→C | 8.8% | T41T (ACA→ACC) | insJ → | insertion element IS150 protein InsA |
| RA | 3,798,666 | A→T | 12.4% | L216* (TTA→TAA) | waaU ← | putative ADP‑heptose:LPS heptosyltransferase 4 |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph] | [rph] | |
| RA | 3,856,594 | A→C | 10.6% | K60N (AAA→AAC) | yidI → | putative inner membrane protein |
| RA | 3,980,726 | G→A | 7.9% | intergenic (+30/‑161) | rffM → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative transporter YifK |
| JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| RA | 4,019,665 | Δ1 bp | 25.6% | coding (42/606 nt) | ubiJ → | ubiquinone biosynthesis accessory factor UbiJ |
| RA | 4,056,531 | A→G | 6.1% | intergenic (‑192/+94) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,056,532 | A→C | 6.1% | intergenic (‑193/+93) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,056,539 | T→A | 6.0% | intergenic (‑200/+86) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,056,540 | T→A | 6.2% | intergenic (‑201/+85) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,056,547 | G→T | 6.9% | intergenic (‑208/+78) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,056,548 | C→T | 5.8% | intergenic (‑209/+77) | glnL ← / ← glnA | sensory histidine kinase NtrB/glutamine synthetase |
| RA | 4,100,573 | A→G | 13.7% | intergenic (‑48/‑237) | rhaT ← / → sodA | rhamnose/lyxose:H(+) symporter/superoxide dismutase (Mn) |
| RA | 4,125,097 | C→T | 100% | E572K (GAG→AAG) | priA ← | primosome factor N' |
| RA | 4,159,126 | G→A | 12.5% | A213T (GCG→ACG) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
| RA | 4,196,268 | Δ1 bp | 10.8% | intergenic (‑169/+64) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| RA | 4,196,269 | Δ1 bp | 10.8% | intergenic (‑170/+63) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| RA | 4,296,060 | C→T | 29.8% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,294 | A→T | 12.3% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 14.2% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,335,654 | T→A | 7.6% | intergenic (‑64/+40) | eptA ← / ← adiC | phosphoethanolamine transferase EptA/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 9.5% | intergenic (‑65/+39) | eptA ← / ← adiC | phosphoethanolamine transferase EptA/arginine:agmatine antiporter |
| RA | 4,470,951 | A→C | 11.9% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,470,952 | T→C | 10.2% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,470,957 | G→A | 11.5% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,470,958 | G→T | 11.2% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,472,437 | T→C | 8.1% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,481,820 | G→A | 13.2% | A673V (GCG→GTG) | valS ← | valine‑‑tRNA ligase |
| RA | 4,532,534 | G→C | 10.0% | A217G (GCC→GGC) | yjhP ← | KpLE2 phage‑like element; putative methyltransferase YjhP |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196245 | 1211455 | 15211 | 21 [18] | [19] 21 | [icd]–[icdC] | [icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC] |
| * | * | ÷ | NC_000913 | 2066277–2066633 | 2066633 | 1–357 | 20 [18] | [19] 21 | [insH‑6] | [insH‑6] |
| * | * | ÷ | NC_000913 | 3423729–3424530 | 3424530 | 1–802 | 20 [19] | [19] 21 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 228744 | 27 (0.570) | 13 (0.290) | 9/252 | NT | 33.5% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA/5S ribosomal RNA |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 315642 | NA (NA) | 8 (0.170) | 4/260 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315712 | NA (NA) | noncoding (484/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315642 = | NA (NA) | 7 (0.150) | 7/254 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315671 = | NA (NA) | noncoding (443/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315689 | NA (NA) | 3 (0.060) | 3/258 | NT | NA | noncoding (461/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315751 | NA (NA) | noncoding (523/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315843 = | NA (NA) | 6 (0.130) | 5/258 | NT | NA | noncoding (615/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315886 = | NA (NA) | noncoding (658/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 342552 = | 56 (1.180) | 3 (0.070) | 3/252 | NT | 5.4% | intergenic (+45/‑332) | yahJ/yahK | putative deaminase with metallo‑dependent hydrolase domain/aldehyde reductase, NADPH‑dependent |
| ? | NC_000913 | 342569 = | 52 (1.150) | intergenic (+62/‑315) | yahJ/yahK | putative deaminase with metallo‑dependent hydrolase domain/aldehyde reductase, NADPH‑dependent | |||||
| * | ? | NC_000913 | 566777 = | NA (NA) | 2112 (44.970) | 251/262 | NT | 97.7% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 49 (1.040) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 566841 | 30 (0.630) | 9 (0.260) +34 bp |
8/196 | NT | 23.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 49 (1.040) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 958761 = | 42 (0.890) | 3 (0.070) | 3/248 | NT | 7.6% | intergenic (+20/‑51) | serC/aroA | phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_000913 | 958782 = | 34 (0.770) | intergenic (+41/‑30) | serC/aroA | phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
| * | ? | NC_000913 | 1061939 = | 41 (0.870) | 3 (0.070) | 3/248 | NT | 7.2% | coding (141/600 nt) | torD | trimethylamine‑N‑oxide reductase‑specific chaperone |
| ? | NC_000913 | 1061960 = | 39 (0.880) | coding (162/600 nt) | torD | trimethylamine‑N‑oxide reductase‑specific chaperone | |||||
| * | ? | NC_000913 | 1239530 = | 35 (0.740) | 4 (0.090) | 3/252 | NT | 10.8% | coding (652/1071 nt) | dadX | alanine racemase 2 |
| ? | NC_000913 | 1239563 = | 33 (0.730) | coding (685/1071 nt) | dadX | alanine racemase 2 | |||||
| * | ? | NC_000913 | 1456809 = | 41 (0.870) | 3 (0.060) | 3/260 | NT | 7.2% | coding (380/1071 nt) | paaE | phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit |
| ? | NC_000913 | 1456830 = | 37 (0.790) | coding (401/1071 nt) | paaE | phenylacetyl‑CoA 1,2‑epoxidase, reductase subunit | |||||
| * | ? | NC_000913 | = 1460521 | 39 (0.820) | 4 (0.090) | 3/250 | NT | 8.9% | coding (51/423 nt) | paaI | phenylacetyl‑CoA thioesterase |
| ? | NC_000913 | = 1460536 | 45 (1.000) | coding (66/423 nt) | paaI | phenylacetyl‑CoA thioesterase | |||||
| * | ? | NC_000913 | = 1621763 | 47 (0.990) | 4 (0.090) | 4/258 | NT | 7.8% | coding (432/1188 nt) | ydeE | dipeptide exporter |
| ? | NC_000913 | = 1621777 | 48 (1.040) | coding (446/1188 nt) | ydeE | dipeptide exporter | |||||
| * | ? | NC_000913 | = 1744848 | 55 (1.160) | 4 (0.090) | 4/244 | NT | 7.1% | intergenic (+18/+23) | mdtK/ydhQ | multidrug efflux pump MdtK/adhesin‑like autotransporter YdhQ |
| ? | NC_000913 | = 1744854 | 54 (1.240) | intergenic (+24/+17) | mdtK/ydhQ | multidrug efflux pump MdtK/adhesin‑like autotransporter YdhQ | |||||
| * | ? | NC_000913 | = 2045732 | 55 (1.160) | 3 (0.070) | 3/250 | NT | 5.3% | coding (795/7077 nt) | yeeJ | inverse autotransporter adhesin |
| ? | NC_000913 | = 2045738 | 55 (1.230) | coding (801/7077 nt) | yeeJ | inverse autotransporter adhesin | |||||
| * | ? | NC_000913 | = 2048904 | 44 (0.930) | 5 (0.110) | 5/250 | NT | 11.5% | coding (3967/7077 nt) | yeeJ | inverse autotransporter adhesin |
| ? | NC_000913 | = 2048914 | 35 (0.780) | coding (3977/7077 nt) | yeeJ | inverse autotransporter adhesin | |||||
| * | ? | NC_000913 | = 2472469 | 55 (1.160) | 3 (0.060) | 3/258 | NT | 5.2% | coding (413/495 nt) | yfdN | CPS‑53 (KpLE1) prophage; protein YzyA |
| ? | NC_000913 | = 2472503 | 55 (1.190) | coding (379/495 nt) | yfdN | CPS‑53 (KpLE1) prophage; protein YzyA | |||||
| * | ? | NC_000913 | 2529006 = | 46 (0.970) | 3 (0.070) | 3/252 | NT | 6.4% | coding (1171/2016 nt) | ligA | DNA ligase |
| ? | NC_000913 | 2529035 = | 44 (0.970) | coding (1142/2016 nt) | ligA | DNA ligase | |||||
| * | ? | NC_000913 | = 3036329 | 46 (0.970) | 5 (0.110) | 5/250 | NT | 10.3% | intergenic (‑47/+44) | prfB/recJ | peptide chain release factor RF2/ssDNA‑specific exonuclease RecJ |
| ? | NC_000913 | = 3036346 | 44 (0.980) | intergenic (‑64/+27) | prfB/recJ | peptide chain release factor RF2/ssDNA‑specific exonuclease RecJ | |||||
| * | ? | NC_000913 | = 3114511 | NA (NA) | 3 (0.070) | 3/250 | NT | NA | intergenic (‑159/+39) | pppA/yghJ | prepilin peptidase/putative lipoprotein YghJ |
| ? | NC_000913 | = 3114541 | NA (NA) | noncoding (29/34 nt) | other | REP219c | |||||
| * | ? | NC_000913 | = 3161672 | 53 (1.120) | 3 (0.060) | 3/258 | NT | 5.3% | coding (998/1413 nt) | ftsP | cell division protein required during stress conditions |
| ? | NC_000913 | = 3161700 | 55 (1.190) | coding (970/1413 nt) | ftsP | cell division protein required during stress conditions | |||||
| * | ? | NC_000913 | = 3341848 | 29 (0.610) | 4 (0.090) | 4/252 | NT | 12.4% | coding (583/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| ? | NC_000913 | = 3341856 | 29 (0.640) | coding (591/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD | |||||
| * | ? | NC_000913 | = 3639355 | NA (NA) | 2 (0.050) +CGAGACTGATTACA |
3/236 | NT | NA | intergenic (+214/+30) | pitA/uspB | metal phosphate:H(+) symporter PitA/putative universal stress (ethanol tolerance) protein B |
| ? | NC_000913 | = 4137897 | NA (NA) | intergenic (‑240/+35) | yijF/gldA | conserved protein YijF/L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase | |||||
| * | ? | NC_000913 | 3810274 = | NA (NA) | 3 (0.070) | 3/250 | NT | NA | coding (450/480 nt) | coaD | pantetheine‑phosphate adenylyltransferase |
| ? | NC_000913 | 3810291 = | NA (NA) | coding (467/480 nt) | coaD | pantetheine‑phosphate adenylyltransferase | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 4 (0.090) | 3/252 | NT | 15.4% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 23 (0.490) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3977430 | 47 (0.990) | 3 (0.070) | 3/250 | NT | 6.3% | coding (1153/1251 nt) | wzxE | lipid III flippase |
| ? | NC_000913 | = 3977447 | 45 (1.000) | coding (1170/1251 nt) | wzxE | lipid III flippase | |||||
| * | ? | NC_000913 | = 4168341 | 18 (0.380) | 3 (0.070) | 3/244 | NT | 14.8% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| ? | NC_000913 | = 4168363 | 18 (0.410) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4289212 | 55 (1.160) | 5 (0.110) | 5/250 | NT | 8.5% | intergenic (+12/‑33) | nrfA/nrfB | cytochrome c552 nitrite reductase/periplasmic nitrite reductase penta‑heme c‑type cytochrome |
| ? | NC_000913 | = 4289220 | 55 (1.230) | intergenic (+20/‑25) | nrfA/nrfB | cytochrome c552 nitrite reductase/periplasmic nitrite reductase penta‑heme c‑type cytochrome | |||||