mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 8.2% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 8.2% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 15,318 | G→A | 8.0% | intergenic (+20/‑127) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 15,319 | T→C | 8.1% | intergenic (+21/‑126) | dnaJ → / → insL1 | chaperone Hsp40, DnaK co‑chaperone/IS186 transposase |
| RA | 18,904 | G→T | 7.7% | E64* (GAG→TAG) ‡ | nhaR → | transcriptional activator of nhaA |
| RA | 18,905 | A→C | 7.7% | E64A (GAG→GCG) ‡ | nhaR → | transcriptional activator of nhaA |
| RA | 83,587 | A→C | 16.2% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 16.2% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 95,070 | G→A | 5.5% | V141I (GTA→ATA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 95,071 | T→C | 5.5% | V141A (GTA→GCA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 111,013 | G→A | 7.7% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 7.7% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 10.0% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 9.7% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 146,733 | G→A | 5.1% | intergenic (‑39/‑235) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 146,734 | A→T | 5.1% | intergenic (‑40/‑234) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 146,735 | T→C | 5.1% | intergenic (‑41/‑233) | panD ← / → yadD | aspartate 1‑decarboxylase/transposase_31 family protein |
| RA | 151,519 | A→C | 5.9% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 6.0% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,098 | T→A | 9.6% | L665Q (CTG→CAG) | hrpB → | putative ATP‑dependent helicase |
| RA | 164,101 | T→A | 9.6% | L666Q (CTG→CAG) | hrpB → | putative ATP‑dependent helicase |
| RA | 164,620 | C→T | 9.3% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 9.2% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 167,917 | A→C | 6.1% | Q145P (CAG→CCG) ‡ | fhuA → | ferrichrome outer membrane transporter |
| RA | 167,918 | G→C | 6.5% | Q145H (CAG→CAC) ‡ | fhuA → | ferrichrome outer membrane transporter |
| RA | 167,919 | G→T | 6.5% | G146C (GGC→TGC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 169,748 | T→A | 7.3% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 7.3% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 191,720 | G→A | 7.9% | intergenic (+12/‑135) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,728 | T→C | 7.9% | intergenic (+20/‑127) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,729 | G→T | 7.8% | intergenic (+21/‑126) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,730 | A→C | 7.9% | intergenic (+22/‑125) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,731 | G→A | 7.8% | intergenic (+23/‑124) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 191,739 | T→C | 6.0% | intergenic (+31/‑116) | tsf → / → pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| RA | 252,589 | G→C | 5.6% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 254,238 | A→T | 5.2% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 256,449 | T→C | 7.9% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.9% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 8.8% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 309,680 | G→T | 21.8% | A116D (GCC→GAC) | ecpB ← | ECP production pilus chaperone |
| RA | 317,143 | C→A | 20.9% | pseudogene (27/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| RA | 336,866 | G→C | 9.1% | G30A (GGC→GCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 340,923 | C→A | 75.2% | L253L (CTC→CTA) | yahI → | carbamate kinase‑like protein |
| RA | 368,461 | T→A | 6.2% | intergenic (‑41/‑150) | mhpR ← / → mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 385,724 | T→A | 6.3% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 420,941 | T→A | 7.7% | intergenic (+31/‑45) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,942 | G→T | 7.6% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,945 | A→C | 7.5% | intergenic (+35/‑41) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,946 | T→A | 7.3% | intergenic (+36/‑40) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 431,107 | A→T | 7.9% | intergenic (+155/+22) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,109 | A→T | 8.1% | intergenic (+157/+20) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 431,111 | A→T | 8.1% | intergenic (+159/+18) | yajD → / ← tsx | HNH nuclease family protein/nucleoside channel, receptor of phage T6 and colicin K |
| RA | 443,022 | G→A | 5.6% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 5.5% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 448,965 | G→A | 7.2% | H559H (CAC→CAT) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 448,966 | T→C | 5.4% | H559R (CAC→CGC) ‡ | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 454,853 | T→C | 9.9% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 10.2% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 464,354 | C→A | 8.4% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 8.5% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 8.3% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 475,971 | C→G | 10.4% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 10.4% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 480,236 | C→G | 5.1% | E25Q (GAG→CAG) | hha ← | modulator of gene expression, with H‑NS |
| RA | 480,237 | C→G | 5.0% | L24L (CTG→CTC) | hha ← | modulator of gene expression, with H‑NS |
| RA | 533,846 | T→C | 7.5% | intergenic (+20/‑70) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 533,849 | G→A | 7.5% | intergenic (+23/‑67) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 543,091 | G→C | 10.4% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 10.3% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 551,495 | T→A | 5.0% | intergenic (+163/+32) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 551,496 | T→A | 5.0% | intergenic (+164/+31) | ybcF → / ← purK | putative carbonate kinase/N5‑carboxyaminoimidazole ribonucleotide synthase |
| RA | 553,885 | G→A | 9.3% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 9.2% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 9.0% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 556,018 | G→A | 5.0% | intergenic (+22/+14) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,019 | T→A | 5.3% | intergenic (+23/+13) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 556,021 | T→C | 5.2% | intergenic (+25/+11) | cysS → / ← ybcI | cysteinyl‑tRNA synthetase/DUF457 family inner membrane protein |
| RA | 594,946 | C→A | 6.9% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 6.6% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 6.7% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 604,752 | G→T | 7.1% | intergenic (‑89/+19) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 604,753 | A→C | 7.1% | intergenic (‑90/+18) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 614,850 | A→C | 5.1% | T232P (ACC→CCC) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 614,854 | A→T | 5.1% | D233V (GAC→GTC) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 614,858 | G→T | 5.5% | G234G (GGG→GGT) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 614,859 | G→A | 5.5% | E235K (GAA→AAA) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 639,654 | T→C | 8.2% | intergenic (+146/‑99) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 639,657 | G→A | 8.0% | intergenic (+149/‑96) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 657,531 | T→G | 6.3% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 6.3% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 6.1% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 659,204 | C→T | 6.3% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 6.5% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 6.5% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 6.5% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 668,354 | G→T | 5.6% | S121* (TCG→TAG) | rlmH ← | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| RA | 699,556 | C→T | 7.6% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 8.7% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 710,170 | C→T | 6.9% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 7.0% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 720,640 | C→A | 15.3% | H20N (CAC→AAC) | ybfK → | uncharacterized protein |
| RA | 725,276 | G→A | 8.9% | Y587Y (TAC→TAT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,279 | T→C | 9.0% | K586K (AAA→AAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 770,679 | G→T | 6.1% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 6.1% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,805 | G→A | 10.6% | intergenic (+194/‑653) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,810 | T→C | 10.4% | intergenic (+199/‑648) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 773,138 | G→A | 5.5% | G33S (GGC→AGC) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 773,145 | T→C | 5.5% | L35P (CTC→CCC) | cydB → | cytochrome d terminal oxidase, subunit II |
| RA | 781,668 | C→T | 6.2% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 5.7% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 5.9% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,824 | C→T | 14.4% | intergenic (+172/‑261) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,826 | A→T | 13.6% | intergenic (+174/‑259) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,828 | A→G | 13.4% | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 786,613 | C→A | 5.6% | A327A (GCC→GCA) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 786,614 | T→G | 5.8% | C328G (TGC→GGC) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 799,679 | G→T | 100% | D299E (GAC→GAA) | ybhD ← | putative DNA‑binding transcriptional regulator |
| RA | 817,814 | C→A | 100% | C257* (TGC→TGA) | moaA → | molybdopterin biosynthesis protein A |
| RA | 847,213 | A→T | 7.0% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 6.6% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 6.9% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 850,993 | T→C | 6.4% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 6.4% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 6.3% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 6.5% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 857,576 | T→C | 10.2% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 10.4% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 10.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 870,888 | T→G | 6.6% | L493R (CTG→CGG) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 870,890 | A→T | 6.7% | T494S (ACC→TCC) ‡ | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 870,892 | C→A | 6.2% | T494T (ACC→ACA) ‡ | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 892,455 | G→C | 11.6% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 12.0% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 11.9% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 894,796 | C→A | 6.4% | P338H (CCT→CAT) ‡ | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 894,797 | T→G | 6.4% | P338P (CCT→CCG) ‡ | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 894,952 | T→A | 5.6% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 897,968:1 | +A | 7.0% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 897,973 | Δ1 bp | 6.5% | intergenic (+44/‑16) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 899,656 | T→C | 9.6% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 899,657 | G→A | 9.6% | intergenic (+12/+187) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 900,201 | T→G | 5.6% | K125N (AAA→AAC) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,202 | T→A | 5.8% | K125I (AAA→ATA) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,205 | A→T | 5.8% | L124Q (CTG→CAG) | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,208 | T→A | 5.8% | D123V (GAT→GTT) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 900,209 | C→A | 5.8% | D123Y (GAT→TAT) ‡ | artJ ← | arginine ABC transporter periplasmic binding protein |
| RA | 922,314:1 | +C | 9.2% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 926,168 | C→T | 7.7% | intergenic (‑197/+57) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,174 | A→T | 8.6% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 9.3% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 958,769 | C→G | 8.5% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 7.6% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 7.7% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 964,148 | T→C | 6.4% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 6.4% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 6.3% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 993,729 | T→A | 6.5% | K106* (AAA→TAA) | ssuB ← | aliphatic sulfonate ABC transporter ATPase |
| RA | 1,015,912 | T→A | 16.0% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 6.5% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 6.5% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,041,937 | T→G | 14.3% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 13.5% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,075,515 | G→T | 12.1% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 12.5% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,100,789 | G→T | 5.2% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 6.0% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 6.2% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,104,931 | G→T | 5.1% | intergenic (+29/‑30) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,113,544 | G→A | 11.3% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 11.3% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 11.2% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,129,394 | G→C | 10.7% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,131,199 | G→C | 5.4% | S61T (AGT→ACT) ‡ | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,200 | T→A | 5.5% | S61R (AGT→AGA) ‡ | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,201 | G→C | 5.4% | V62L (GTG→CTG) | flgB → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,602 | A→T | 5.1% | P55P (CCA→CCT) | flgC → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,131,608 | T→A | 5.4% | A57A (GCT→GCA) | flgC → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,143,746 | G→T | 7.7% | H208N (CAT→AAT) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,143,747 | A→C | 7.6% | I207M (ATT→ATG) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,147,980 | G→T | 7.9% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 8.1% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 8.1% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 9.3% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,153,208 | T→C | 7.5% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 7.7% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 7.7% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 8.0% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,159,335 | G→T | 7.4% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 7.4% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 6.4% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 6.6% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 6.5% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 10.7% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 11.6% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,182,771 | G→C | 5.7% | A20G (GCC→GGC) | potD ← | spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,200,197 | C→A | 100% | D204Y (GAT→TAT) | intE ← | e14 prophage; putative integrase |
| RA | 1,204,408 | G→A | 5.1% | pseudogene (5/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,231,963 | T→A | 5.2% | Y260N (TAT→AAT) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,233,154 | T→A | 5.4% | intergenic (‑124/+22) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,233,157 | T→A | 5.6% | intergenic (‑127/+19) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,260,901 | C→T | 6.5% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 6.4% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,262,293 | T→C | 5.6% | P195P (CCA→CCG) | ispE ← | 4‑diphosphocytidyl‑2‑C‑methylerythritol kinase |
| RA | 1,290,989 | C→A | 22.2% | H250N (CAT→AAT) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| RA | 1,306,787 | G→A | 9.9% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 10.0% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,311,830 | A→G | 5.5% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 5.7% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,318,469 | T→C | 7.3% | A440A (GCA→GCG) ‡ | trpC ← | indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| RA | 1,318,470 | G→A | 7.8% | A440V (GCA→GTA) ‡ | trpC ← | indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| RA | 1,324,837 | A→C | 8.0% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 7.9% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 8.5% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,330,396:1 | +T | 6.7% | intergenic (+15/+21) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,399 | A→T | 6.6% | intergenic (+18/+18) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,330,402 | Δ1 bp | 6.4% | intergenic (+21/+15) | sohB → / ← yciN | inner membrane protein, S49 peptidase family protein/DUF2498 protein YciN |
| RA | 1,335,681 | T→C | 8.1% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 8.2% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,344,033 | A→G | 9.6% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 9.6% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 9.3% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,352,990 | C→A | 40.6% | L213F (TTG→TTT) | sapD ← | antimicrobial peptide ABC transporter ATPase |
| RA | 1,371,933 | T→A | 5.2% | L9I (TTA→ATA) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,371,936 | T→A | 5.8% | S10T (TCA→ACA) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,388,283 | C→T | 12.9% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 13.9% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 12.8% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,408,537 | A→T | 5.6% | E163V (GAG→GTG) | ydaN → | putative Zn(II) transporter |
| RA | 1,410,986 | A→G | 7.8% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,990 | T→A | 7.2% | intergenic (+106/+23) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,991 | T→A | 7.2% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,995 | C→T | 7.5% | intergenic (+111/+18) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,413,033 | G→C | 5.0% | S68C (TCC→TGC) | intR ← | Rac prophage; integrase |
| RA | 1,415,148 | G→T | 20.5% | P747T (CCG→ACG) | recE ← | Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease |
| RA | 1,445,616 | G→C | 6.2% | A856P (GCA→CCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,445,621 | G→C | 6.2% | W857C (TGG→TGC) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,449,050 | T→A | 10.0% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,469,198 | T→A | 5.0% | intergenic (‑49/‑43) | insC1 ← / → ydbA | IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,469,199 | T→A | 5.0% | intergenic (‑50/‑42) | insC1 ← / → ydbA | IS2 repressor TnpA/pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,482,222 | A→T | 5.2% | intergenic (+21/+33) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,224 | T→G | 5.3% | intergenic (+23/+31) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,227 | C→A | 5.5% | intergenic (+26/+28) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,482,229 | A→T | 5.1% | intergenic (+28/+26) | ynbD → / ← azoR | putative phosphatase inner membrane protein/NADH‑azoreductase, FMN‑dependent |
| RA | 1,483,342 | G→C | 6.2% | Q94H (CAG→CAC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,483,343 | G→C | 6.3% | V95L (GTG→CTG) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,493,194 | G→C | 7.0% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,517,481 | C→G | 7.9% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 8.0% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,530,742 | G→T | 13.8% | pseudogene (157/738 nt) | yncI → | pseudogene |
| RA | 1,629,435 | G→A | 7.8% | intergenic (+17/+18) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,436 | A→T | 7.4% | intergenic (+18/+17) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,437 | T→C | 7.2% | intergenic (+19/+16) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,638,489 | T→A | 6.9% | K60I (AAA→ATA) ‡ | cspI ← | Qin prophage; cold shock protein |
| RA | 1,638,490 | T→A | 6.0% | K60* (AAA→TAA) ‡ | cspI ← | Qin prophage; cold shock protein |
| RA | 1,664,796 | G→T | 100% | V97V (GTG→GTT) | dmsD → | twin‑argninine leader‑binding protein for DmsA and TorA |
| RA | 1,665,671 | C→A | 89.1% | R119R (CGC→CGA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,674,955 | A→T | 5.8% | intergenic (+8/+17) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,674,958 | A→T | 6.1% | intergenic (+11/+14) | tqsA → / ← pntB | pheromone AI‑2 transporter/pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,679,398 | T→A | 6.2% | intergenic (+27/‑159) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,400 | G→C | 6.0% | intergenic (+29/‑157) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,679,402 | T→A | 6.1% | intergenic (+31/‑155) | ydgH → / → ydgI | DUF1471 family periplasmic protein/putative arginine/ornithine antiporter transporter |
| RA | 1,689,817 | C→A | 7.6% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 6.3% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 6.3% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,692,978 | A→C | 5.6% | L429R (CTC→CGC) | uidB ← | glucuronide transporter |
| RA | 1,701,108 | A→T | 12.9% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,703,593 | A→G | 5.2% | I239T (ATC→ACC) | ydgJ ← | putative oxidoreductase |
| RA | 1,712,337 | A→T | 5.1% | intergenic (+179/‑432) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,338 | A→T | 5.1% | intergenic (+180/‑431) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,736,097 | T→A | 6.0% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 6.2% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,763,608 | C→T | 7.1% | V134V (GTG→GTA) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,763,609 | A→G | 7.0% | V134A (GTG→GCG) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,764,687 | T→C | 8.9% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 5.6% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 5.7% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 5.8% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 9.8% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,770,203 | T→A | 6.9% | intergenic (+17/‑169) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,204 | C→G | 6.9% | intergenic (+18/‑168) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,770,205 | T→A | 6.9% | intergenic (+19/‑167) | ydiK → / → rprA | UPF0118 family inner membrane protein/sRNA antisense activator for RpoS translation, Hfq‑dependent |
| RA | 1,795,227 | A→T | 11.4% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 11.4% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 11.3% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,799,370 | Δ1 bp | 5.8% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 5.7% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,808,680 | T→A | 9.9% | intergenic (+24/+17) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,808,682 | C→G | 9.9% | intergenic (+26/+15) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,808,684 | T→A | 9.9% | intergenic (+28/+13) | yniA → / ← yniB | fructosamine kinase family protein/putative inner membrane protein |
| RA | 1,810,062 | T→C | 5.3% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 5.3% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 5.3% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 5.3% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,829,328 | C→G | 5.0% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,334 | G→T | 5.4% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,832,212 | C→A | 6.1% | intergenic (‑230/‑216) | astC ← / → xthA | succinylornithine transaminase, PLP‑dependent/exonuclease III |
| RA | 1,856,333 | T→G | 9.5% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 9.6% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,863,800 | T→C | 5.7% | intergenic (+34/‑50) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,801 | T→G | 5.6% | intergenic (+35/‑49) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,802 | C→A | 5.8% | intergenic (+36/‑48) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,803 | G→A | 5.7% | intergenic (+37/‑47) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,864,768 | T→C | 5.5% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 12.8% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,859 | Δ1 bp | 8.2% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,868,865:1 | +G | 7.6% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,872,130 | C→T | 6.9% | A30A (GCC→GCT) | yeaJ → | putative diguanylate cyclase |
| RA | 1,872,131 | A→G | 6.9% | S31G (AGC→GGC) | yeaJ → | putative diguanylate cyclase |
| RA | 1,880,851 | T→A | 6.9% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 6.9% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,888,030 | A→T | 5.4% | intergenic (‑39/+31) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,032 | T→A | 5.4% | intergenic (‑41/+29) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,888,034 | A→T | 5.4% | intergenic (‑43/+27) | rnd ← / ← fadD | ribonuclease D/acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,904,592 | C→A | 9.3% | T233N (ACT→AAT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,904,595 | T→G | 8.2% | I234S (ATT→AGT) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 1,937,980 | G→A | 6.2% | G111D (GGT→GAT) | pykA → | pyruvate kinase II |
| RA | 1,954,256 | T→A | 5.4% | I272N (ATT→AAT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| RA | 1,965,088 | C→T | 5.3% | V368V (GTG→GTA) ‡ | flhB ← | flagellin export apparatus, substrate specificity protein |
| RA | 1,965,089 | A→G | 5.4% | V368A (GTG→GCG) ‡ | flhB ← | flagellin export apparatus, substrate specificity protein |
| RA | 1,977,962 | G→T | 80.8% | T79K (ACG→AAG) | flhD ← | flagellar class II regulon transcriptional activator, with FlhC |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,981,814 | T→A | 5.7% | T192S (ACG→TCG) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,981,815 | T→A | 5.7% | R191R (CGA→CGT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
| RA | 1,982,830 | A→T | 5.1% | I237I (ATT→ATA) | araH ← | L‑arabinose ABC transporter permease |
| RA | 1,985,112 | C→G | 14.1% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,450:1 | +A | 5.9% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,857 | C→T | 6.0% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 6.1% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 6.1% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 5.9% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,992,083 | G→C | 9.6% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 1,999,343 | T→G | 6.4% | A46A (GCA→GCC) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 1,999,346 | C→A | 6.3% | M45I (ATG→ATT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,001,926 | G→A | 7.8% | intergenic (‑137/+184) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,001,927 | G→C | 7.5% | intergenic (‑138/+183) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,001,928 | T→C | 7.8% | intergenic (‑139/+182) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,014,396 | G→T | 5.4% | D390Y (GAT→TAT) ‡ | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,014,397 | A→C | 5.8% | D390A (GAT→GCT) ‡ | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,020,631 | C→A | 17.3% | S182* (TCG→TAG) | fliM → | flagellar motor switching and energizing component |
| RA | 2,025,834 | C→A | 67.7% | R108R (CGC→CGA) | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,041,159 | G→A | 5.1% | intergenic (+41/‑216) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,160 | T→G | 5.1% | intergenic (+42/‑215) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,166 | G→T | 5.0% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,059,950 | T→A | 5.0% | intergenic (+24/+14) | asnU → / ← cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| RA | 2,062,354 | T→A | 10.0% | intergenic (+19/+37) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,355 | T→G | 10.0% | intergenic (+20/+36) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,356 | C→A | 9.8% | intergenic (+21/+35) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,062,357 | T→A | 9.8% | intergenic (+22/+34) | asnV → / ← ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein |
| RA | 2,074,691 | C→G | 9.2% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 6.4% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,090,122 | A→G | 13.7% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 13.0% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 13.0% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,093,965 | C→G | 5.5% | D166E (GAC→GAG) | hisB → | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,093,969 | T→A | 5.6% | Y168N (TAC→AAC) | hisB → | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,093,973 | C→G | 5.5% | A169G (GCT→GGT) | hisB → | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,103,105 | C→A | 7.3% | pseudogene (285/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,103,106 | T→A | 7.5% | pseudogene (284/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,103,107 | T→G | 7.5% | pseudogene (283/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,171,814 | A→G | 6.7% | intergenic (‑87/+19) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,816 | C→G | 5.8% | intergenic (‑89/+17) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,171,818 | C→T | 5.8% | intergenic (‑91/+15) | gatR ← / ← gatD | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted/galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,172,350 | A→T | 6.2% | L175Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,172,353 | A→T | 6.1% | L174Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,187,314 | C→G | 8.2% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| RA | 2,232,033 | G→T | 75.7% | A64S (GCG→TCG) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,270,232 | G→T | 7.3% | G85V (GGC→GTC) | mepS → | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase |
| RA | 2,282,375 | C→T | 100% | H582Y (CAC→TAC) | yejH → | putative ATP‑dependent DNA or RNA helicase |
| RA | 2,286,311 | C→G | 7.4% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 7.4% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 7.3% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,290,347 | G→T | 17.9% | intergenic (‑167/‑153) | yejO ← / → narP | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system/response regulator in two‑component regulatory system with NarQ |
| RA | 2,302,295 | G→T | 100% | I153I (ATC→ATA) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,305,085 | A→G | 11.1% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 10.8% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 10.8% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,314,800 | A→C | 6.2% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 6.3% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,356,734 | G→C | 5.1% | intergenic (+23/‑170) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,737 | T→C | 5.4% | intergenic (+26/‑167) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,738 | G→A | 5.4% | intergenic (+27/‑166) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,741 | G→C | 5.4% | intergenic (+30/‑163) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,379,376 | C→A | 72.2% | G423V (GGG→GTG) | menF ← | isochorismate synthase 2 |
| RA | 2,390,012 | Δ1 bp | 5.3% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 5.4% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,407,898 | A→C | 8.0% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 8.5% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,414,689 | C→G | 11.8% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,415,725 | C→A | 6.7% | L327M (CTG→ATG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,415,726 | T→G | 7.3% | L327R (CTG→CGG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,419,395 | C→G | 7.0% | V132L (GTG→CTG) | yfcE ← | phosphodiesterase activity on bis‑pNPP |
| RA | 2,425,968 | T→G | 6.8% | intergenic (‑52/+38) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,971 | C→A | 7.1% | intergenic (‑55/+35) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,425,975 | A→G | 7.1% | intergenic (‑59/+31) | hisQ ← / ← hisJ | histidine ABC transporter permease/histidine ABC transporter periplasmic binding protein |
| RA | 2,432,995 | C→T | 5.6% | intergenic (‑53/+17) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,440,865 | C→T | 6.5% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 6.4% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,441,661 | C→A | 6.5% | intergenic (‑56/‑103) | fabB ← / → mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,441,662 | T→G | 6.4% | intergenic (‑57/‑102) | fabB ← / → mnmC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme |
| RA | 2,456,904 | C→A | 19.1% | intergenic (‑92/+111) | sixA ← / ← fadJ | phosphohistidine phosphatase/enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,482,839 | C→G | 10.7% | L167F (TTG→TTC) | emrK ← | multidrug resistance efflux pump membrane fusion protein |
| RA | 2,493,563 | T→A | 5.1% | intergenic (‑309/+204) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,518,197 | C→G | 5.5% | noncoding (35/76 nt) | alaW ← | tRNA‑Ala |
| RA | 2,521,344 | C→T | 7.3% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 6.5% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,536,100 | C→A | 12.9% | F89L (TTC→TTA) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,560,317 | A→C | 12.6% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 13.0% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 12.0% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 12.0% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,205 | A→T | 5.3% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 5.6% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,581,762 | G→A | 5.7% | A339V (GCC→GTC) | ypfG ← | DUF1176 family protein |
| RA | 2,581,765 | T→C | 5.6% | D338G (GAC→GGC) | ypfG ← | DUF1176 family protein |
| RA | 2,594,337 | C→A | 76.6% | G508V (GGT→GTT) | tmcA ← | elongator methionine tRNA (ac4C34) acetyltransferase |
| RA | 2,622,348:1 | +A | 6.0% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 5.9% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,630,918 | A→T | 6.5% | intergenic (+53/+40) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,919 | G→A | 5.6% | intergenic (+54/+39) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,920 | T→C | 5.6% | intergenic (+55/+38) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,921 | A→T | 5.6% | intergenic (+56/+37) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,637,433 | C→T | 11.0% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 10.8% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 10.0% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 11.7% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,638,584 | A→T | 5.3% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,367 | G→A | 7.1% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 6.9% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,684,083 | C→T | 5.8% | intergenic (+27/+171) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,192 | A→G | 7.9% | intergenic (+136/+62) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,193 | A→C | 7.2% | intergenic (+137/+61) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,199 | T→G | 7.2% | intergenic (+143/+55) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,200 | C→A | 7.2% | intergenic (+144/+54) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,206 | G→T | 7.1% | intergenic (+150/+48) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,207 | C→T | 6.4% | intergenic (+151/+47) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,691,169 | A→T | 7.8% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 8.2% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 8.1% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,706,134 | Δ1 bp | 5.7% | coding (991/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,606 | G→T | 8.6% | L173L (CTC→CTA) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,607 | A→C | 8.9% | L173R (CTC→CGC) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,707,320 | A→T | 7.2% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 7.2% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,716,030 | T→G | 10.4% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 10.1% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,717,169 | T→G | 5.5% | L139R (CTC→CGC) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,717,170 | C→A | 5.5% | L139L (CTC→CTA) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,724,095 | C→A | 8.9% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 8.9% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 8.8% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,731,073 | A→T | 6.0% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 5.8% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,750,073 | G→T | 5.0% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 6.1% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 6.3% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 6.2% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,761,620 | T→G | 9.4% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 9.6% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,768,620 | G→A | 6.3% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,778,123 | G→T | 8.0% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 8.0% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,796,375 | T→A | 7.6% | I138F (ATT→TTT) | ygaU ← | uncharacterized protein |
| RA | 2,799,634 | A→G | 10.7% | intergenic (+21/+16) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,799,635 | T→A | 10.0% | intergenic (+22/+15) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,799,636 | C→T | 10.0% | intergenic (+23/+14) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,807,091 | T→C | 5.3% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 5.3% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 5.3% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,810,872 | C→T | 6.5% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 6.5% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,860 | A→G | 6.0% | noncoding (59/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,814,861 | C→T | 5.9% | noncoding (60/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,849,945 | A→T | 7.7% | intergenic (‑96/+29) | hycB ← / ← hycA | hydrogenase 3, Fe‑S subunit/regulator of the transcriptional regulator FhlA |
| RA | 2,852,048 | C→T | 5.5% | A62V (GCC→GTC) | hypC → | hydrogenase maturation protein |
| RA | 2,859,332 | T→G | 7.6% | L747R (CTC→CGC) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,859,333 | C→A | 7.4% | L747L (CTC→CTA) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,866,487 | G→C | 5.6% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 5.6% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 6.7% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 6.5% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 7.4% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,902,494 | G→T | 6.8% | G200V (GGA→GTA) ‡ | ygcE → | putative kinase |
| RA | 2,902,495 | A→C | 6.6% | G200G (GGA→GGC) ‡ | ygcE → | putative kinase |
| RA | 2,907,998 | A→T | 8.5% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,915,978 | C→T | 6.0% | L308L (CTG→TTG) ‡ | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,915,980 | G→C | 5.6% | L308L (CTG→CTC) ‡ | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,915,982 | A→G | 5.7% | N309S (AAT→AGT) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,923,969 | C→G | 8.5% | E49Q (GAG→CAG) | yqcC ← | DUF446 family protein |
| RA | 2,923,970 | C→G | 8.6% | L48L (CTG→CTC) | yqcC ← | DUF446 family protein |
| RA | 2,923,978 | C→G | 5.9% | E46Q (GAA→CAA) | yqcC ← | DUF446 family protein |
| RA | 2,936,359 | T→A | 6.2% | V259D (GTT→GAT) ‡ | fucI → | L‑fucose isomerase |
| RA | 2,936,360 | T→A | 6.7% | V259V (GTT→GTA) ‡ | fucI → | L‑fucose isomerase |
| RA | 2,951,471 | G→A | 5.9% | R331C (CGC→TGC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,475 | T→A | 5.8% | L329L (CTA→CTT) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,966,303 | G→T | 7.8% | A711E (GCA→GAA) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 2,967,686 | G→T | 9.1% | S250* (TCG→TAG) | ptsP ← | PEP‑protein phosphotransferase enzyme I; GAF domain containing protein |
| RA | 2,971,151 | T→C | 5.2% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 5.6% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 5.3% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,976,320 | T→G | 7.1% | noncoding (66/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,976,321 | C→A | 7.2% | noncoding (65/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 3,007,473 | G→A | 5.1% | intergenic (+21/‑37) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,020,510 | G→T | 5.6% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 5.6% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 5.7% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,045,127 | T→G | 5.0% | intergenic (+26/+31) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,057,140 | A→G | 7.9% | intergenic (+152/+38) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 8.2% | intergenic (+157/+33) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 7.7% | intergenic (+162/+28) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,059,704 | A→T | 5.8% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,061,817 | G→C | 7.4% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 7.4% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,068,929 | A→C | 5.4% | intergenic (‑121/+18) | argO ← / ← mscS | arginine transporter/mechanosensitive channel protein, small conductance |
| RA | 3,078,186 | C→T | 6.6% | G225D (GGC→GAC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,078,191 | A→G | 6.4% | G223G (GGT→GGC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,079,615 | C→T | 6.6% | intergenic (‑285/+29) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,616 | G→T | 6.6% | intergenic (‑286/+28) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,617 | A→C | 6.6% | intergenic (‑287/+27) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,079,618 | A→G | 6.6% | intergenic (‑288/+26) | cmtB ← / ← tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| RA | 3,092,774:1 | +A | 11.5% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,092,779 | Δ1 bp | 10.6% | coding (902/951 nt) | gshB → | glutathione synthetase |
| RA | 3,103,566 | T→A | 100% | M185K (ATG→AAG) | mutY → | adenine DNA glycosylase |
| RA | 3,143,679 | C→A | 12.5% | S162S (TCG→TCT) | hybB ← | putative hydrogenase 2 cytochrome b type component |
| RA | 3,156,590 | C→A | 13.1% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 13.3% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,180,497 | Δ1 bp | 9.8% | coding (77/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,505 | G→T | 11.4% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 11.6% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 10.5% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 8.2% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 7.9% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,206,172 | T→C | 7.6% | T29A (ACG→GCG) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,206,176 | C→A | 7.3% | A27A (GCG→GCT) | ttdR ← | transcriptional activator of ttdABT |
| RA | 3,238,705 | G→A | 5.4% | A42A (GCG→GCA) | alx → | putative membrane‑bound redox modulator |
| RA | 3,239,609 | T→G | 14.0% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 13.9% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 13.0% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,246,561 | T→G | 6.6% | intergenic (+39/‑91) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,246,562 | C→A | 6.3% | intergenic (+40/‑90) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,246,563 | T→G | 6.2% | intergenic (+41/‑89) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,246,564 | C→A | 6.5% | intergenic (+42/‑88) | exuT → / → exuR | hexuronate transporter/hexuronate regulon transcriptional repressor; autorepressor |
| RA | 3,250,989 | G→C | 6.4% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.4% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 6.1% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 6.2% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,288,032 | C→A | 7.9% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 7.5% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,307,070 | G→T | 9.3% | A264D (GCT→GAT) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,313,207 | G→A | 7.9% | intergenic (‑29/+135) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,208 | T→A | 7.9% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 7.9% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,324,952 | A→G | 6.6% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 7.4% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 7.4% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 7.3% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 5.1% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 5.1% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,330,415 | Δ1 bp | 8.0% | intergenic (+19/+167) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,419:1 | +T | 7.7% | intergenic (+23/+163) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,330,427 | C→T | 5.7% | intergenic (+31/+155) | dacB → / ← obgE | D‑alanyl‑D‑alanine carboxypeptidase/GTPase involved in cell partioning and DNA repair |
| RA | 3,332,822 | G→A | 10.0% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 9.8% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 8.4% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 9.1% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 8.5% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,368,142 | A→T | 7.2% | M106L (ATG→TTG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,150 | C→T | 6.8% | G108G (GGC→GGT) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,219 | G→A | 6.5% | T131T (ACG→ACA) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,220 | C→G | 6.6% | L132V (CTG→GTG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,368,237 | C→G | 7.7% | F137L (TTC→TTG) | yhcG → | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| RA | 3,428,678 | A→T | 25.9% | noncoding (85/1542 nt) | rrsD ← | 16S ribosomal RNA of rrnD operon |
| RA | 3,428,679 | A→T | 25.9% | noncoding (84/1542 nt) | rrsD ← | 16S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 15.6% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 14.8% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,451,404 | T→G | 5.4% | D94A (GAC→GCC) | rplW ← | 50S ribosomal subunit protein L23 |
| RA | 3,471,357 | C→T | 9.4% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 10.1% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 9.6% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 9.6% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,474,031 | C→G | 6.1% | K17N (AAG→AAC) | rpsG ← | 30S ribosomal subunit protein S7 |
| RA | 3,476,585 | G→A | 13.0% | intergenic (‑145/+22) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,476,586 | T→C | 13.3% | intergenic (‑146/+21) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,480,662 | T→A | 7.7% | H167L (CAC→CTC) | kefG ← | potassium‑efflux system ancillary protein for KefB, glutathione‑regulated |
| RA | 3,480,664 | G→C | 7.7% | S166R (AGC→AGG) ‡ | kefG ← | potassium‑efflux system ancillary protein for KefB, glutathione‑regulated |
| RA | 3,480,666 | T→A | 7.9% | S166C (AGC→TGC) ‡ | kefG ← | potassium‑efflux system ancillary protein for KefB, glutathione‑regulated |
| RA | 3,486,217 | A→C | 5.5% | Q33P (CAG→CCG) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,218 | G→T | 5.6% | Q33H (CAG→CAT) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,225 | A→T | 5.7% | K36* (AAA→TAA) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,489,234 | T→C | 6.2% | Q316R (CAG→CGG) ‡ | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,489,235 | G→A | 6.3% | Q316* (CAG→TAG) ‡ | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,505,785 | A→T | 7.9% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,512,585 | T→G | 6.0% | intergenic (‑241/+49) | yhfZ ← / ← trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| RA | 3,512,586 | C→A | 6.0% | intergenic (‑242/+48) | yhfZ ← / ← trpS | putative DNA‑binding transcriptional regulator/tryptophanyl‑tRNA synthetase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,561,969 | A→T | 5.9% | intergenic (‑146/‑44) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,561,972 | A→T | 7.0% | intergenic (‑149/‑41) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,620,606 | A→G | 26.1% | N472S (AAC→AGC) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,620,644 | T→A | 26.1% | L485M (TTG→ATG) ‡ | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,620,646 | G→A | 28.6% | L485L (TTG→TTA) ‡ | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,629,495 | A→T | 10.5% | L15Q (CTG→CAG) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,498 | T→C | 9.9% | Q14R (CAA→CGA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,503 | G→A | 9.9% | V12V (GTC→GTT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,629,506 | A→T | 9.4% | P11P (CCT→CCA) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,642,358 | T→A | 7.5% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 7.5% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 15.7% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 15.2% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 15.8% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,701,840 | A→G | 7.1% | intergenic (+6/+24) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,843 | Δ1 bp | 6.3% | intergenic (+9/+21) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,847:1 | +C | 6.1% | intergenic (+13/+17) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,850 | C→T | 6.0% | intergenic (+16/+14) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,708,427 | G→A | 8.9% | intergenic (‑722/+189) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,428 | T→A | 8.7% | intergenic (‑723/+188) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,429 | T→C | 8.7% | intergenic (‑724/+187) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,595 | G→A | 9.3% | intergenic (‑890/+21) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,596 | T→A | 9.5% | intergenic (‑891/+20) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,708,597 | T→C | 9.5% | intergenic (‑892/+19) | dppA ← / ← proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| RA | 3,714,163:1 | +T | 13.0% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 12.6% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,720,294 | T→C | 5.3% | intergenic (+33/+154) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,299 | T→A | 5.4% | intergenic (+38/+149) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,300 | T→A | 5.4% | intergenic (+39/+148) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,305 | G→A | 5.7% | intergenic (+44/+143) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,793 | G→T | 5.2% | Q38H (CAG→CAT) | insJ → | IS150 transposase A |
| RA | 3,774,207 | C→T | 9.0% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 10.0% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 10.0% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 9.9% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,778,876 | G→A | 7.1% | G493D (GGC→GAC) | lldP → | L‑lactate permease |
| RA | 3,778,879 | T→C | 7.1% | V494A (GTC→GCC) | lldP → | L‑lactate permease |
| RA | 3,780,128 | T→C | 5.9% | I101T (ATT→ACT) | lldD → | L‑lactate dehydrogenase, FMN‑linked |
| RA | 3,781,051 | C→G | 12.4% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,787,624:1 | +A | 5.2% | coding (787/1260 nt) | envC → | activator of AmiB,C murein hydrolases, septal ring factor |
| RA | 3,790,300 | A→T | 7.8% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 7.8% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,798,234 | A→T | 6.1% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 6.0% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,838,583 | T→A | 5.5% | I112I (ATT→ATA) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,842,796 | G→T | 20.4% | L332M (CTG→ATG) | adeQ ← | adenine permease, high affinity; adenine:H+ symporter |
| RA | 3,845,746 | G→A | 6.8% | intergenic (+16/+30) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,845,748 | C→G | 7.0% | intergenic (+18/+28) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,845,750 | T→C | 6.7% | intergenic (+20/+26) | adeD → / ← uhpT | cryptic adenine deaminase/hexose phosphate transporter |
| RA | 3,853,674 | G→T | 9.8% | intergenic (+32/‑248) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,675 | A→T | 10.0% | intergenic (+33/‑247) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,676 | A→T | 9.6% | intergenic (+34/‑246) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,853,677 | A→C | 9.7% | intergenic (+35/‑245) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,877,558 | G→C | 13.2% | intergenic (‑93/+147) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| RA | 3,900,542 | A→T | 5.6% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 5.6% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,920,305 | C→A | 77.8% | A33A (GCG→GCT) | atpH ← | F1 sector of membrane‑bound ATP synthase, delta subunit |
| RA | 3,923,376 | A→G | 5.3% | V102A (GTG→GCG) ‡ | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,923,377 | C→T | 5.3% | V102M (GTG→ATG) ‡ | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,959,480 | A→T | 13.9% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 13.9% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,515 | T→A | 5.9% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,963,293:1 | +C | 9.5% | coding (937/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,299 | Δ1 bp | 9.5% | coding (931/1485 nt) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,415 | A→C | 8.2% | L272R (CTG→CGG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,963,416 | G→T | 8.5% | L272M (CTG→ATG) ‡ | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,967,704 | G→A | 6.2% | intergenic (+28/‑212) | rho → / → wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 3,967,705 | T→A | 6.3% | intergenic (+29/‑211) | rho → / → wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 3,967,706 | T→A | 6.0% | intergenic (+30/‑210) | rho → / → wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 3,967,707 | T→C | 6.0% | intergenic (+31/‑209) | rho → / → wecA | transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| RA | 3,971,996 | T→A | 5.7% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,980,726 | G→A | 6.9% | intergenic (+30/‑161) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,727 | T→C | 7.1% | intergenic (+31/‑160) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,992,585 | G→T | 85.7% | S478I (AGC→ATC) | cyaA → | adenylate cyclase |
| RA | 3,993,370 | G→T | 28.4% | G740W (GGG→TGG) | cyaA → | adenylate cyclase |
| RA | 3,998,686 | T→A | 5.6% | L235Q (CTG→CAG) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 3,998,689 | T→A | 5.6% | L236Q (CTG→CAG) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,002,398 | T→C | 8.0% | intergenic (+22/+21) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,002,400 | T→A | 9.0% | intergenic (+24/+19) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,002,402 | G→A | 7.9% | intergenic (+26/+17) | corA → / ← yigF | magnesium/nickel/cobalt transporter/DUF2628 family putative inner membrane protein |
| RA | 4,015,333 | A→T | 5.8% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,017,216:1 | +A | 5.4% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 6.0% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,040,654 | T→C | 5.7% | intergenic (+18/+252) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,660 | G→T | 6.3% | intergenic (+24/+246) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,663 | A→C | 5.6% | intergenic (+27/+243) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,669 | G→A | 5.7% | intergenic (+33/+237) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,040,676 | C→T | 9.1% | intergenic (+40/+230) | rrfA → / ← mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 17.0% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 16.5% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,060,261 | G→T | 11.5% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 11.7% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,078,131 | C→A | 79.8% | A228E (GCG→GAG) | yiiD → | GNAT family putative N‑acetyltransferase |
| RA | 4,093,463 | A→G | 7.3% | S270S (AGT→AGC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,116,935 | C→A | 15.5% | K96N (AAG→AAT) | glpK ← | glycerol kinase |
| RA | 4,117,062 | C→A | 79.8% | W54L (TGG→TTG) | glpK ← | glycerol kinase |
| RA | 4,121,959 | T→G | 5.7% | N110T (AAC→ACC) | hslV ← | peptidase component of the HslUV protease |
| RA | 4,127,251 | C→T | 11.5% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 11.5% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,144,083 | G→T | 9.2% | S30I (AGC→ATC) | pflD → | putative glycine radical domain‑containing pyruvate formate‑lyase |
| RA | 4,177,171 | T→A | 8.0% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 8.6% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,182,574 | G→T | 100% | D444Y (GAT→TAT) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,193,185 | G→C | 5.9% | T131S (ACT→AGT) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
| RA | 4,213,131 | C→T | 6.2% | noncoding (92/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,213,156 | G→A | 7.5% | noncoding (117/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,245,111 | C→A | 5.1% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,261,358 | T→A | 5.0% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 5.1% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,285,313 | A→G | 7.2% | intergenic (‑100/+100) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
| RA | 4,285,314 | A→C | 7.1% | intergenic (‑101/+99) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
| RA | 4,285,320 | T→A | 7.3% | intergenic (‑107/+93) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
| RA | 4,285,321 | T→A | 7.3% | intergenic (‑108/+92) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
| RA | 4,291,512 | G→A | 6.5% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 6.5% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 24.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,193 | G→T | 6.4% | intergenic (‑68/+26) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,194 | A→T | 6.8% | intergenic (‑69/+25) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,195 | A→T | 6.8% | intergenic (‑70/+24) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,297,196 | A→C | 8.4% | intergenic (‑71/+23) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,303,981 | G→T | 6.2% | Y43* (TAC→TAA) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,303,984 | A→C | 6.0% | A42A (GCT→GCG) | mdtN ← | membrane fusion protein of efflux pump |
| RA | 4,306,540 | T→C | 6.4% | S20G (AGC→GGC) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,306,541 | G→A | 5.4% | A19A (GCC→GCT) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,307,294 | A→T | 12.6% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 12.7% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,312,089 | A→G | 6.0% | intergenic (‑47/+12) | alsB ← / ← alsR | D‑allose ABC transporter periplasmic binding protein/d‑allose‑inducible als operon transcriptional repressor; autorepressor; repressor of rpiR |
| RA | 4,313,903 | G→T | 23.0% | L12L (CTG→CTT) | yjdP → | putative periplasmic protein |
| RA | 4,314,227 | A→T | 5.9% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 9.8% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,239 | A→T | 7.9% | intergenic (+42/+105) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,332,868 | G→T | 9.5% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 9.5% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,335,654 | T→A | 7.9% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 8.0% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,339,802 | A→G | 5.6% | A240A (GCT→GCC) | adiA ← | arginine decarboxylase |
| RA | 4,339,805 | C→T | 5.4% | Q239Q (CAG→CAA) | adiA ← | arginine decarboxylase |
| RA | 4,353,171 | C→G | 6.5% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,356,445 | A→T | 11.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 11.1% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 5.7% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 5.7% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 13.1% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 13.7% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,371,931 | G→T | 6.3% | E303* (GAA→TAA) ‡ | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,371,932 | A→C | 5.8% | E303A (GAA→GCA) ‡ | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,373,273 | A→G | 5.4% | intergenic (+111/+92) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,288 | C→T | 5.2% | intergenic (+126/+77) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,376,291 | T→C | 5.3% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,633 | C→T | 5.5% | G27G (GGC→GGT) | ecnB → | entericidin B membrane lipoprotein |
| RA | 4,377,791 | A→T | 5.4% | intergenic (‑69/+20) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,377,792 | A→T | 6.0% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,386,126 | C→T | 5.7% | R1082H (CGT→CAT) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,386,129 | A→G | 5.7% | M1081T (ATG→ACG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,395,454 | T→C | 6.8% | C463C (TGT→TGC) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,395,455 | G→A | 6.8% | A464T (GCA→ACA) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,409,402 | Δ1 bp | 6.5% | coding (128/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,407 | T→A | 7.8% | S45T (TCT→ACT) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,410:1 | +A | 8.2% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,410,026 | G→A | 6.4% | intergenic (+20/‑107) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,034 | G→A | 10.1% | intergenic (+28/‑99) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,037 | T→C | 10.1% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,414,533 | G→T | 77.9% | A87S (GCC→TCC) | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,422,887 | G→A | 9.9% | A14A (GCG→GCA) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,895 | C→G | 9.4% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,424,465 | G→T | 7.6% | intergenic (+79/+51) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,424,468 | A→C | 7.8% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,426,592 | T→A | 7.2% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,439,845 | T→A | 7.9% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,479,012 | A→T | 5.8% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 6.3% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 6.1% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,509,571 | C→A | 81.6% | pseudogene (93/315 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,512,350:1 | +G | 7.9% | coding (65/957 nt) | fecD ← | ferric citrate ABC transporter permease |
| RA | 4,513,106 | C→G | 6.1% | A102P (GCG→CCG) | fecC ← | ferric citrate ABC transporter permease |
| RA | 4,513,111 | C→G | 6.1% | G100A (GGC→GCC) | fecC ← | ferric citrate ABC transporter permease |
| RA | 4,514,335 | A→T | 6.6% | intergenic (‑27/+18) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,514,336 | A→T | 6.3% | intergenic (‑28/+17) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,520,500 | Δ1 bp | 14.1% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 13.6% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 8.2% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 8.4% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,551,422 | T→A | 6.5% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,608,604 | C→G | 5.1% | I140M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,608,607 | C→G | 5.1% | I141M (ATC→ATG) | rimI → | ribosomal‑protein‑S18‑alanine N‑acetyltransferase |
| RA | 4,612,331 | C→T | 5.5% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,638,690 | C→T | 9.2% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 9.2% | T172A (ACC→GCC) | creD → | inner membrane protein |
| RA | 4,639,554 | A→T | 5.8% | intergenic (+24/+36) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,555 | A→T | 5.8% | intergenic (+25/+35) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,556 | A→T | 5.8% | intergenic (+26/+34) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| RA | 4,639,557 | A→T | 5.8% | intergenic (+27/+33) | creD → / ← arcA | inner membrane protein/response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423761–3424546 | 3424546 | 1–786 | 50 [47] | [49] 50 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 103901 = | 118 (1.140) | 9 (0.090) | 8/250 | NT | 7.6% | coding (747/831 nt) | ftsQ | divisome assembly protein, membrane anchored protein involved in growth of wall at septum |
| ? | NC_000913 | 103941 = | 107 (1.090) | coding (787/831 nt) | ftsQ | divisome assembly protein, membrane anchored protein involved in growth of wall at septum | |||||
| * | ? | NC_000913 | = 206853 | 92 (0.890) | 5 (0.050) | 4/246 | NT | 5.5% | coding (1728/3483 nt) | dnaE | DNA polymerase III alpha subunit |
| ? | NC_000913 | = 206868 | 86 (0.890) | coding (1743/3483 nt) | dnaE | DNA polymerase III alpha subunit | |||||
| * | ? | NC_000913 | 224891 = | NA (NA) | 3 (0.030) | 3/254 | NT | NA | noncoding (1121/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224923 = | NA (NA) | noncoding (1153/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 580768 | 59 (0.570) | 5 (0.060) | 3/230 | NT | 8.6% | intergenic (‑323/‑66) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 580793 | 55 (0.610) | intergenic (‑348/‑41) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | 839224 = | 90 (0.870) | 6 (0.060) | 8/248 | NT | 6.8% | intergenic (‑17/+25) | ybiX/fiu | Fe(II)‑dependent oxygenase superfamily protein/catecholate siderophore receptor |
| ? | NC_000913 | 839242 = | 78 (0.800) | intergenic (‑35/+7) | ybiX/fiu | Fe(II)‑dependent oxygenase superfamily protein/catecholate siderophore receptor | |||||
| * | ? | NC_000913 | 916728 = | 79 (0.770) | 4 (0.040) | 4/250 | NT | 5.1% | coding (256/1659 nt) | ybjD | putative OLD family ATP‑dependent endonuclease; DUF2813 family protein |
| ? | NC_000913 | 916757 = | 72 (0.730) | coding (285/1659 nt) | ybjD | putative OLD family ATP‑dependent endonuclease; DUF2813 family protein | |||||
| * | ? | NC_000913 | 1040547 = | NA (NA) | 6 (0.060) | 6/242 | NT | NA | noncoding (5/36 nt) | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 1040579 = | NA (NA) | intergenic (+42/‑38) | cbdX/appA | putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase | |||||
| * | ? | NC_000913 | 1207790 = | 42 (0.410) | 59 (0.650) | 52/230 | NT | 62.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 35 (0.390) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 40 (0.390) | 53 (0.590) | 43/230 | NT | 60.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 35 (0.390) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 1 (0.010) | 129 (1.290) | 89/254 | NT | 99.6% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1693812 | 89 (0.860) | 5 (0.050) | 4/254 | NT | 5.5% | coding (452/1374 nt) | uidB | glucuronide transporter |
| ? | NC_000913 | = 1693839 | 85 (0.850) | coding (425/1374 nt) | uidB | glucuronide transporter | |||||
| * | ? | NC_000913 | = 1768790 | 90 (0.870) | 5 (0.050) | 4/252 | NT | 5.4% | intergenic (‑105/‑284) | ydiJ/ydiK | putative FAD‑linked oxidoreductase/UPF0118 family inner membrane protein |
| ? | NC_000913 | = 1768882 | 90 (0.910) | intergenic (‑197/‑192) | ydiJ/ydiK | putative FAD‑linked oxidoreductase/UPF0118 family inner membrane protein | |||||
| * | ? | NC_000913 | 1846862 = | 57 (0.550) | 4 (0.040) | 4/248 | NT | 6.0% | coding (99/1962 nt) | topB | DNA topoisomerase III |
| ? | NC_000913 | 1846899 = | 71 (0.730) | coding (62/1962 nt) | topB | DNA topoisomerase III | |||||
| * | ? | NC_000913 | 2729443 = | 41 (0.400) | 9 (0.090) | 6/242 | NT | 19.4% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913 | 2729485 = | 37 (0.390) | intergenic (‑41/+131) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3158891 | 78 (0.760) | 5 (0.050) | 4/248 | NT | 6.5% | intergenic (+7/+36) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
| ? | NC_000913 | = 3158922 | 70 (0.720) | intergenic (+38/+5) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein | |||||
| * | ? | NC_000913 | 3296999 = | NA (NA) | 9 (0.090) | 8/248 | NT | NA | noncoding (1/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3297032 = | NA (NA) | noncoding (34/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 3418917 | 88 (0.850) | 8 (0.080) | 7/250 | NT | 8.8% | intergenic (+306/‑125) | yhdV/yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| ? | NC_000913 | = 3418941 | 82 (0.830) | intergenic (+330/‑101) | yhdV/yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily | |||||
| * | ? | NC_000913 | 3603646 = | 79 (0.770) | 8 (0.080) | 4/252 | NT | 10.0% | coding (598/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor |
| ? | NC_000913 | 3603693 = | 68 (0.690) | coding (551/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 15 (0.150) | 7/250 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3975245 = | 93 (0.900) | 6 (0.060) | 6/256 | NT | 6.4% | coding (100/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| ? | NC_000913 | 3975274 = | 84 (0.830) | coding (129/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase | |||||
| * | ? | NC_000913 | = 3977603 | 98 (0.950) | 5 (0.050) | 5/252 | NT | 5.1% | coding (79/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| ? | NC_000913 | = 3977623 | 92 (0.930) | coding (99/1080 nt) | wecF | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase | |||||
| * | ? | NC_000913 | = 4040683 | 53 (0.510) | 28 (0.280) | 13/258 | NT | 28.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213162 | 92 (0.910) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||