mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,159 | G→A | 10.9% | intergenic (+139/‑75) | thrC → / → Y75_RS00030 | threonine synthase/DUF2502 domain‑containing protein |
| RA | 5,439 | A→C | 19.9% | H69P (CAC→CCC) | Y75_RS00030 → | DUF2502 domain‑containing protein |
| RA | 12,491 | T→G | 12.3% | M110R (ATG→AGG) | dnaK → | molecular chaperone DnaK |
| RA | 81,041 | T→G | 6.9% | A306A (GCA→GCC) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 82,766 | A→G | 11.7% | L255P (CTC→CCC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,580 | C→A | 5.5% | intergenic (‑51/+42) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 95,830 | G→A | 7.1% | S394N (AGC→AAC) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide‑‑D‑alanyl‑D‑ alanine ligase |
| RA | 100,440 | T→G | 14.9% | V266G (GTG→GGG) | murG → | undecaprenyldiphospho‑muramoylpentapeptide beta‑N‑acetylglucosaminyltransferase |
| RA | 138,323 | C→G | 9.1% | A414G (GCG→GGG) | cueO → | multicopper oxidase CueO |
| RA | 138,398 | A→G | 11.3% | D439G (GAC→GGC) | cueO → | multicopper oxidase CueO |
| RA | 225,465 | A→C | 10.1% | intergenic (+8/‑35) | Y75_RS01025 → / → Y75_RS01030 | tRNA‑Ile/tRNA‑Ala |
| RA | 225,466 | C→G | 10.1% | intergenic (+9/‑34) | Y75_RS01025 → / → Y75_RS01030 | tRNA‑Ile/tRNA‑Ala |
| RA | 225,467 | G→T | 9.8% | intergenic (+10/‑33) | Y75_RS01025 → / → Y75_RS01030 | tRNA‑Ile/tRNA‑Ala |
| RA | 228,688 | Δ1 bp | 100% | intergenic (+9/‑70) | Y75_RS01035 → / → rrf | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 249,538 | T→G | 28.8% | H187P (CAC→CCC) | flhA ← | flagellar type III secretion system protein FlhA |
| RA | 282,321 | T→C | 10.1% | S274P (TCC→CCC) | yagE → | 2‑keto‑3‑deoxygluconate aldolase |
| RA | 283,190 | T→C | 31.4% | S256P (TCC→CCC) | yagF → | xylonate dehydratase YagF |
| RA | 284,748 | A→G | 12.2% | I44V (ATT→GTT) | Y75_RS01395 → | MFS transporter |
| RA | 295,748 | T→G | 14.2% | G191G (GGA→GGC) | Y75_RS01450 ← | integrase family protein |
| RA | 295,781 | A→T | 8.4% | S180R (AGT→AGA) | Y75_RS01450 ← | integrase family protein |
| RA | 321,890 | T→G | 7.7% | V110G (GTG→GGG) | Y75_RS01590 → | iron‑sulfur cluster‑binding protein |
| RA | 334,473 | G→A | 8.0% | intergenic (‑227/‑31) | Y75_RS01640 ← / → Y75_RS01645 | DUF1097 domain‑containing protein/ankyrin repeat domain‑containing protein |
| RA | 344,547 | C→A | 16.7% | intergenic (+332/‑81) | Y75_RS01685 → / → Y75_RS01690 | hypothetical protein/hypothetical protein |
| RA | 352,834 | C→G | 16.1% | A302G (GCG→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | 359,586 | T→G | 18.5% | V133G (GTG→GGG) | cynX → | cyanate transporter CynX |
| RA | 432,867 | C→A | 15.6% | A63A (GCC→GCA) | ribD → | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| RA | 432,873 | T→G | 27.3% | G65G (GGT→GGG) | ribD → | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase RibD |
| RA | 484,753 | G→T | 6.1% | Q31K (CAA→AAA) | acrA ← | multidrug efflux RND transporter periplasmic adaptor subunit AcrA |
| RA | 541,377 | A→G | 6.2% | E89G (GAG→GGG) | glxK → | glycerate 3‑kinase |
| RA | 547,694 | A→G | 100% | E38E (GAA→GAG) | Y75_RS02655 → | hypothetical protein |
| RA | 547,831:1 | +G | 100% | coding (251/261 nt) | Y75_RS02655 → | hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD |
| RA | 564,475 | A→T | 7.4% | S243T (TCA→ACA) | Y75_RS02750 ← | site‑specific integrase |
| RA | 598,804 | A→G | 11.6% | I290V (ATC→GTC) | cusA → | Cu(+)/Ag(+) efflux RND transporter permease subunit CusA |
| RA | 612,506 | A→G | 13.5% | I183V (ATT→GTT) | fes → | enterochelin esterase |
| RA | 629,410 | A→G | 9.4% | G98G (GGA→GGG) | cstA → | carbon starvation protein CstA |
| RA | 630,516 | A→G | 6.4% | D467G (GAT→GGT) | cstA → | carbon starvation protein CstA |
| RA | 646,433 | A→C | 21.8% | G100G (GGT→GGG) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase CitG |
| RA | 658,088 | T→A | 12.3% | L91F (TTA→TTT) | crcB ← | fluoride efflux transporter CrcB |
| RA | 667,452 | G→T | 6.8% | A396A (GCC→GCA) | mrdA ← | peptidoglycan DD‑transpeptidase MrdA |
| RA | 758,982 | G→C | 9.7% | intergenic (+155/‑146) | Y75_RS03750 → / → sucA | succinate dehydrogenase iron‑sulfur subunit SdhB/2‑oxoglutarate dehydrogenase E1 component |
| RA | 812,143 | T→G | 31.3% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase BioC |
| RA | 812,145 | A→G | 13.8% | T68A (ACG→GCG) | bioC → | malonyl‑ACP O‑methyltransferase BioC |
| RA | 816,265 | G→C | 9.4% | R269G (CGG→GGG) | yvcK ← | uridine diphosphate‑N‑acetylglucosamine‑binding protein YvcK |
| RA | 825,652 | C→A | 12.6% | M293I (ATG→ATT) | Y75_RS04130 ← | ABC transporter permease |
| RA | 864,139 | A→G | 8.6% | T26A (ACC→GCC) | fsa → | fructose‑6‑phosphate aldolase |
| RA | 864,182 | A→G | 11.1% | D40G (GAT→GGT) | fsa → | fructose‑6‑phosphate aldolase |
| RA | 864,293 | C→T | 6.5% | S77F (TCT→TTT) | fsa → | fructose‑6‑phosphate aldolase |
| RA | 871,060 | T→G | 11.4% | S410A (TCG→GCG) | gsiB → | glutathione ABC transporter substrate‑binding protein GsiB |
| RA | 871,774 | A→G | 17.1% | D129G (GAT→GGT) | gsiC → | glutathione ABC transporter permease GsiC |
| RA | 884,611 | A→G | 20.4% | M173V (ATG→GTG) | mdfA → | multidrug efflux MFS transporter MdfA |
| RA | 891,829 | A→G | 15.6% | E75G (GAG→GGG) | nfsA → | nitroreductase NfsA |
| RA | 904,342 | C→A | 8.8% | intergenic (‑186/+32) | artP ← / ← Y75_RS04505 | arginine ABC transporter ATP‑binding protein ArtP/lipoprotein |
| RA | 954,776 | G→C | 5.8% | A38G (GCG→GGG) | focA ← | formate transporter FocA |
| RA | 954,782 | T→A | 7.2% | Y36F (TAT→TTT) | focA ← | formate transporter FocA |
| RA | 954,788 | G→A | 8.9% | T34I (ACT→ATT) | focA ← | formate transporter FocA |
| RA | 954,805 | C→T | 13.6% | T28T (ACG→ACA) | focA ← | formate transporter FocA |
| RA | 954,809 | G→T | 14.0% | A27E (GCA→GAA) | focA ← | formate transporter FocA |
| RA | 959,491 | T→G | 14.6% | G86G (GGT→GGG) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 959,499 | A→G | 17.5% | E89G (GAG→GGG) | aroA → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| RA | 990,324 | C→T | 17.9% | S152N (AGC→AAC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 990,365 | T→G | 22.6% | S138S (TCA→TCC) | pncB ← | nicotinate phosphoribosyltransferase |
| RA | 1,023,339 | C→G | 8.6% | A326P (GCA→CCA) | yccS ← | TIGR01666 family membrane protein |
| RA | 1,031,267 | T→A | 7.3% | I192F (ATT→TTT) | yccA ← | FtsH protease modulator YccA |
| RA | 1,058,914 | A→C | 17.4% | T137P (ACC→CCC) | torC → | pentaheme c‑type cytochrome TorC |
| RA | 1,062,421 | T→G | 13.9% | R67R (CGT→CGG) | torD → | molecular chaperone TorD |
| RA | 1,065,700 | C→T | 100% | R415C (CGT→TGT) | Y75_RS05220 → | YccE family protein |
| RA | 1,072,078 | T→C | 12.1% | E37G (GAG→GGG) | rutD ← | pyrimidine utilization protein D |
| RA | 1,077,794 | T→G | 9.6% | Y504S (TAC→TCC) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | Y75_RS05355 → | GGDEF domain‑containing protein |
| RA | 1,144,310 | T→G | 11.7% | E545D (GAA→GAC) | rne ← | ribonuclease E |
| RA | 1,173,394 | A→C | 7.7% | S716R (AGT→AGG) | mfd ← | transcription‑repair coupling factor |
| RA | 1,211,532 | A→G | 7.7% | T91A (ACG→GCG) | pinE → | site‑specific DNA recombinase |
| RA | 1,241,406 | T→G | 13.2% | G317G (GGT→GGG) | dadX → | catabolic alanine racemase DadX |
| RA | 1,273,414 | G→T | 9.8% | Q5K (CAA→AAA) | chaA ← | sodium‑potassium/proton antiporter ChaA |
| RA | 1,303,712 | A→G | 100% | S273G (AGC→GGC) | oppA → | oligopeptide ABC transporter substrate‑binding protein OppA |
| RA | 1,327,694 | A→T | 14.2% | Y412F (TAC→TTC) | Y75_RS06660 → | DUF2207 domain‑containing protein |
| RA | 1,379,389 | C→A | 5.2% | H282N (CAT→AAT) | Y75_RS06935 → | Gfo/Idh/MocA family oxidoreductase |
| MC JC | 1,413,639 | Δ23,060 bp | 100% | [ttcA]–Y75_RS24865 | 33 genes [ttcA], Y75_RS23540, xisR, rcbA, ralR, recT, recE, Y75_RS07140, Y75_RS07145, kilR, Y75_RS07155, Y75_RS07160, racR, ydaS, Y75_RS07175, Y75_RS07180, Y75_RS07185, Y75_RS07190, rzoD, Y75_RS07200, Y75_RS07205, Y75_RS07210, Y75_RS07215, Y75_RS07220, Y75_RS07225, Y75_RS07230, Y75_RS07235, Y75_RS23570, Y75_RS07255, Y75_RS07260, ydfK, Y75_RS24860, Y75_RS24865 |
|
| RA | 1,442,107 | T→G | 14.2% | Q131P (CAG→CCG) | nifJ ← | pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | 1,457,560 | A→C | 8.7% | H228P (CAC→CCC) | paaC → | phenylacetate‑CoA oxygenase subunit PaaC |
| RA | 1,468,299 | T→C | 9.2% | pseudogene (1194/2526 nt) | Y75_RS07400 → | autotransporter domain‑containing protein |
| RA | 1,475,460 | T→G | 13.3% | G715G (GGT→GGG) | Y75_RS07420 → | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | 1,521,798 | G→A | 14.5% | intergenic (+20/‑178) | curA → / → Y75_RS07665 | NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional regulator McbR |
| RA | 1,527,463 | G→A | 6.3% | L78L (CTG→TTG) | ansP ← | L‑asparagine permease |
| RA | 1,533,124 | C→A | 5.7% | pseudogene (825/1145 nt) | Y75_RS07705 → | ISAs1 family transposase |
| RA | 1,555,708 | T→G | 19.8% | D559A (GAC→GCC) | Y75_RS07805 ← | malate dehydrogenase |
| RA | 1,555,715 | A→T | 14.9% | Y557N (TAC→AAC) | Y75_RS07805 ← | malate dehydrogenase |
| RA | 1,562,470 | T→C | 19.5% | G58G (GGA→GGG) | Y75_RS07840 ← | ABC transporter permease |
| RA | 1,618,142 | G→T | 10.5% | W222C (TGG→TGT) | yneK → | putative protein YneK |
| RA | 1,618,471 | T→A | 9.0% | V332E (GTA→GAA) | yneK → | putative protein YneK |
| RA | 1,703,339 | A→G | 9.8% | G223G (GGA→GGG) | malY → | bifunctional maltose regulon transcriptional repressor/cystathionine beta‑lyase MalY |
| RA | 1,739,298 | A→G | 100% | intergenic (‑39/‑260) | ynhF ← / → purR | stress response protein YnhF/HTH‑type transcriptional repressor PurR |
| RA | 1,748,986 | G→A | 9.4% | E48K (GAA→AAA) | Y75_RS08785 → | FAD‑NAD(P)‑binding protein |
| RA | 1,767,050 | G→C | 10.2% | R99R (CGC→CGG) | menI ← | 1,4‑dihydroxy‑2‑naphthoyl‑CoA hydrolase |
| RA | 1,825,992 | C→A | 14.3% | T255K (ACA→AAA) | cho → | excinuclease Cho |
| RA | 1,832,263 | T→C | 10.5% | I73V (ATT→GTT) | astA ← | arginine N‑succinyltransferase |
| RA | 1,874,129 | A→C | 7.6% | A125A (GCA→GCC) | Y75_RS09405 → | GGDEF domain‑containing protein |
| RA | 1,877,749 | A→T | 12.9% | L121F (TTA→TTT) | nimT → | 2‑nitroimidazole transporter |
| RA | 1,884,065 | T→G | 13.7% | V147G (GTG→GGG) | dmlA → | multifunctional D‑malate/3‑isopropylmalate/tartarate dehydrogenase |
| RA | 1,920,690 | T→G | 11.4% | G489G (GGT→GGG) | yebT → | lipid‑binding membrane homeostasis protein YebT |
| RA | 1,987,781 | G→C | 6.9% | A162G (GCG→GGG) | Y75_RS10010 ← | arabinose ABC transporter substrate‑binding protein AraF |
| RA | 1,993,600 | G→C | 10.6% | L53V (CTG→GTG) | yecA ← | UPF0149 family protein YecA |
| JC | 2,110,579 | Δ11 bp | 13.4% | coding (1133‑1143/1248 nt) | wzx ← | O16 family O‑antigen flippase |
| RA | 2,153,826 | G→T | 36.2% | intergenic (+43/+22) | Y75_RS10870 → / ← pphC | YegJ family protein/protein‑serine/threonine phosphatase PphC |
| RA | 2,188,533 | T→G | 18.8% | T35P (ACC→CCC) | thiM ← | hydroxyethylthiazole kinase |
| RA | 2,219,275 | A→C | 13.3% | V179G (GTG→GGG) | yehW ← | glycine betaine ABC transporter permease YehW |
| RA | 2,247,473 | T→G | 20.8% | V77G (GTG→GGG) | yeiG → | S‑formylglutathione hydrolase |
| RA | 2,250,922 | A→C | 11.8% | G315G (GGT→GGG) | lysP ← | lysine‑specific permease |
| RA | 2,254,610 | A→C | 6.4% | N146T (AAC→ACC) | nfo → | deoxyribonuclease IV |
| RA | 2,306,099 | A→C | 9.9% | G83G (GGT→GGG) | napD ← | chaperone NapD |
| RA | 2,308,132 | T→C | 11.8% | intergenic (+405/+310) | eco → / ← mqo | serine protease inhibitor ecotin/malate dehydrogenase (quinone) |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | Y75_RS11650–[rcsC] | Y75_RS11650, Y75_RS11650, [rcsC] | |
| RA | 2,337,807 | A→C | 17.8% | pseudogene (1056/4395 nt) | Y75_RS11710 ← | alpha‑2‑macroglobulin family protein |
| RA | 2,345,442 | A→C | 18.1% | V1133G (GTG→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | 2,345,446 | G→C | 14.0% | Q1132E (CAG→GAG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | 2,345,468 | A→C | 19.4% | G1124G (GGT→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | 2,362,507 | C→G | 10.5% | R8G (CGG→GGG) | Y75_RS11800 → | hypothetical protein |
| RA | 2,362,522 | C→A | 10.5% | Q13K (CAA→AAA) | Y75_RS11800 → | hypothetical protein |
| RA | 2,383,639 | T→C | 24.4% | G97G (GGA→GGG) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylic‑acid synthase |
| RA | 2,403,310 | A→C | 8.6% | V509G (GTG→GGG) | nuoG ← | NADH‑quinone oxidoreductase subunit NuoG |
| RA | 2,405,166 | A→C | 9.5% | C354G (TGT→GGT) | nuoF ← | NADH‑quinone oxidoreductase subunit NuoF |
| RA | 2,441,182 | T→C | 5.2% | E305G (GAG→GGG) | Y75_RS12190 ← | aspartate‑semialdehyde dehydrogenase |
| RA | 2,510,098 | A→C | 10.6% | V299G (GTG→GGG) | ypdE ← | aminopeptidase |
| RA | 2,547,919 | T→A | 7.3% | T14S (ACC→TCC) | cysT ← | sulfate/thiosulfate ABC transporter permease CysT |
| RA | 2,573,524 | T→G | 15.9% | T46P (ACC→CCC) | eutQ ← | ethanolamine utilization acetate kinase EutQ |
| RA | 2,582,095 | A→G | 6.4% | S14P (TCC→CCC) | nudK ← | GDP‑mannose pyrophosphatase NudK |
| RA | 2,655,664 | T→G | 10.1% | T26P (ACC→CCC) | fdx ← | ISC system 2Fe‑2S type ferredoxin |
| RA | 2,665,514 | T→A | 11.7% | Y330F (TAC→TTC) | Y75_RS13270 ← | 3‑phenylpropionate MFS transporter |
| RA | 2,669,184 | A→C | 10.8% | T47P (ACA→CCA) | Y75_RS13285 → | 3‑phenylpropionate/cinnamic acid dioxygenase subunit beta |
| RA | 2,743,745 | A→C | 12.9% | V84G (GTG→GGG) | trmD ← | tRNA (guanosine(37)‑N1)‑methyltransferase TrmD |
| RA | 2,787,258 | C→T | 16.6% | pseudogene (961/1008 nt) | Y75_RS24085 → | alpha amylase |
| RA | 2,792,331 | T→G | 5.9% | V314G (GTG→GGG) | Y75_RS13895 → | 4‑aminobutyrate‑‑2‑oxoglutarate transaminase |
| RA | 2,797,637 | C→A | 15.0% | intergenic (‑486/‑183) | stpA ← / → alaE | DNA‑binding protein StpA/L‑alanine exporter AlaE |
| RA | 2,798,223 | G→T | 7.8% | C135F (TGC→TTC) | alaE → | L‑alanine exporter AlaE |
| RA | 2,829,094 | T→C | 14.3% | I209T (ATC→ACC) | gutQ → | arabinose‑5‑phosphate isomerase GutQ |
| RA | 2,835,274 | T→G | 25.7% | T270P (ACG→CCG) | hypF ← | carbamoyltransferase HypF |
| RA | 2,836,980 | T→A | 12.5% | D315V (GAT→GTT) | Y75_RS14155 ← | DNA‑binding transcriptional regulator AscG |
| RA | 2,855,999 | T→G | 8.9% | V84G (GTG→GGG) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,866,109 | C→A | 100% | pseudogene (99/993 nt) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,869,758 | A→T | 8.6% | I68N (ATT→AAT) | truD ← | tRNA pseudouridine(13) synthase TruD |
| RA | 2,904,033 | A→C | 13.1% | G14G (GGT→GGG) | queE ← | 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,906,975 | C→G | 100% | D450H (GAC→CAC) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| RA | 2,907,885 | A→C | 18.1% | G146G (GGT→GGG) | pyrG ← | CTP synthase (glutamine hydrolyzing) |
| RA | 2,973,749 | T→G | 19.7% | T308P (ACT→CCT) | aas ← | bifunctional acyl‑ACP‑‑phospholipid O‑acyltransferase/long‑chain‑fatty‑acid‑‑ACP ligase |
| RA | 2,973,763 | A→T | 11.3% | I303N (ATC→AAC) | aas ← | bifunctional acyl‑ACP‑‑phospholipid O‑acyltransferase/long‑chain‑fatty‑acid‑‑ACP ligase |
| RA | 3,050,876 | T→C | 9.5% | E33G (GAG→GGG) | Y75_RS15145 ← | FAD‑dependent 2‑octaprenylphenol hydroxylase |
| RA | 3,053,578 | T→G | 7.7% | T175P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | 3,063,453 | T→A | 10.9% | intergenic (+19/‑5) | scpB → / → scpC | methylmalonyl‑CoA decarboxylase/propionyl‑CoA:succinate CoA transferase |
| RA | 3,124,823 | T→C | 17.2% | D119G (GAT→GGT) | glcE ← | glycolate oxidase subunit GlcE |
| RA | 3,124,839 | T→C | 12.2% | S114G (AGC→GGC) | glcE ← | glycolate oxidase subunit GlcE |
| RA | 3,181,275 | C→T | 12.1% | L24F (CTC→TTC) | zupT → | zinc transporter ZupT |
| RA | 3,205,094 | G→A | 33.2% | intergenic (‑182/‑25) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,108 | C→A | 19.4% | intergenic (‑196/‑11) | ttdR ← / → ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,127 | C→G | 17.5% | S3R (AGC→AGG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,132 | G→A | 12.5% | S5N (AGT→AAT) ‡ | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,133 | T→A | 18.3% | S5R (AGT→AGA) ‡ | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,139 | G→A | 28.5% | K7K (AAG→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,140 | C→A | 18.6% | Q8K (CAA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,143 | C→A | 14.4% | Q9K (CAG→AAG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,146 | G→A | 11.5% | A10T (GCA→ACA) ‡ | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,147 | C→A | 13.8% | A10E (GCA→GAA) ‡ | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,150 | T→A | 12.0% | V11E (GTG→GAG) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,205,162 | C→A | 17.5% | T15K (ACA→AAA) | ttdA → | L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,206,097 | A→C | 9.0% | Y24S (TAC→TCC) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,231,065 | G→C | 7.3% | G249R (GGC→CGC) | Y75_RS16040 → | NADPH‑dependent 2,4‑dienoyl‑CoA reductase |
| RA | 3,244,258 | T→G | 9.3% | F127V (TTC→GTC) | Y75_RS16105 → | hexuronate transporter ExuT |
| RA | 3,257,442 | A→C | 9.2% | G288G (GGT→GGG) | Y75_RS16190 ← | L‑serine ammonia‑lyase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | Y75_RS16205–[tdcD] | Y75_RS16205, [tdcD] | |
| RA | 3,382,468 | A→T | 11.1% | L138F (TTA→TTT) | degS → | outer membrane‑stress sensor serine endopeptidase DegS |
| RA | 3,485,352 | A→C | 23.6% | A590A (GCA→GCC) | ppc → | phosphoenolpyruvate carboxylase |
| RA | 3,486,265 | G→T | 6.8% | intergenic (+31/‑151) | ppc → / → cptA | phosphoenolpyruvate carboxylase/phosphoethanolamine transferase CptA |
| RA | 3,491,605 | T→G | 13.2% | N361T (AAC→ACC) | Y75_RS17340 ← | formate C‑acetyltransferase |
| RA | 3,524,599 | T→C | 7.2% | S45P (TCC→CCC) | Y75_RS17500 → | YiiQ family protein |
| RA | 3,535,174 | A→C | 18.2% | intergenic (‑183/+77) | kdgT ← / ← sodA | 2‑keto‑3‑deoxygluconate transporter/superoxide dismutase [Mn] |
| RA | 3,562,757 | A→C | 10.7% | G62G (GGT→GGG) | yihV ← | sulfofructose kinase |
| RA | 3,571,077 | A→T | 19.7% | I55F (ATC→TTC) | Y75_RS17735 → | MFS transporter |
| RA | 3,628,571 | A→C | 12.2% | G118G (GGT→GGG) | rhtC ← | threonine export protein RhtC |
| RA | 3,645,110 | A→T | 43.7% | L140Q (CTG→CAG) | cyaA ← | class I adenylate cyclase |
| RA | 3,656,455 | C→T | 100% | V91I (GTT→ATT) | rffM ← | lipopolysaccharide N‑acetylmannosaminouronosyltransferase |
| RA | 3,661,304 | T→C | 10.4% | S78G (AGC→GGC) | rffA ← | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | 3,693,171 | T→G | 15.9% | noncoding (76/76 nt) | Y75_RS18330 ← | tRNA‑Glu |
| RA | 3,741,125 | A→G | 20.1% | M352V (ATG→GTG) | Y75_RS18545 → | adenine permease AdeP |
| RA | 3,741,158 | A→G | 15.8% | I363V (ATT→GTT) | Y75_RS18545 → | adenine permease AdeP |
| RA | 3,741,162 | A→T | 12.1% | Y364F (TAC→TTC) | Y75_RS18545 → | adenine permease AdeP |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | Y75_RS18560–Y75_RS18560 | Y75_RS18560, Y75_RS18560 | |
| RA | 3,760,479 | A→C | 8.7% | T62P (ACC→CCC) | gyrB → | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | 3,760,795 | T→G | 10.8% | V167G (GTG→GGG) | gyrB → | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | 3,762,475 | T→G | 12.6% | V727G (GTG→GGG) | gyrB → | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | 3,762,518 | T→G | 7.7% | G741G (GGT→GGG) | gyrB → | DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | 3,764,878 | C→T | 13.3% | A34T (GCA→ACA) | Y75_RS18670 ← | hypothetical protein |
| RA | 3,766,140 | T→G | 6.8% | V67G (GTT→GGT) | Y75_RS18680 → | 2‑dehydro‑3‑deoxygalactonokinase |
| RA | 3,775,794 | T→G | 9.3% | S551R (AGT→AGG) | Y75_RS18725 → | putative transporter |
| RA | 3,777,741 | G→T | 21.7% | L310F (TTG→TTT) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,742 | C→T | 25.4% | L311L (CTG→TTG) ‡ | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,744 | G→T | 20.6% | L311L (CTG→CTT) ‡ | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,745 | A→T | 40.7% | I312F (ATT→TTT) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,753 | A→C | 31.6% | A314A (GCA→GCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,777,754 | A→C | 23.5% | T315P (ACC→CCC) | Y75_RS18735 → | PTS transporter subunit EIIC |
| RA | 3,787,934 | T→C | 5.7% | S102P (TCC→CCC) | ilvB → | acetolactate synthase large subunit |
| RA | 3,789,879 | A→G | 5.5% | E64G (GAG→GGG) | uhpA → | transcriptional regulator UhpA |
| RA | 3,790,748 | T→G | 5.4% | V157G (GTG→GGG) | uhpB → | signal transduction histidine‑protein kinase/phosphatase UhpB |
| RA | 3,793,018 | A→G | 9.4% | S410G (AGC→GGC) | uhpC → | MFS transporter family glucose‑6‑phosphate receptor UhpC |
| RA | 3,793,023 | A→G | 7.2% | G411G (GGA→GGG) | uhpC → | MFS transporter family glucose‑6‑phosphate receptor UhpC |
| RA | 3,797,586 | A→T | 5.2% | T321S (ACT→TCT) | Y75_RS18845 → | adenine permease AdeQ |
| RA | 3,797,669 | A→C | 5.8% | S348S (TCA→TCC) | Y75_RS18845 → | adenine permease AdeQ |
| RA | 3,798,047 | T→G | 7.5% | V12G (GTG→GGG) | Y75_RS18850 → | DUF1198 domain‑containing protein |
| RA | 3,799,610 | C→G | 6.3% | A312G (GCG→GGG) | nepI → | purine ribonucleoside efflux pump NepI |
| RA | 3,801,517 | C→A | 8.9% | L217F (TTG→TTT) | Y75_RS18875 ← | DMT family transporter |
| RA | 3,807,459 | T→G | 5.3% | C528G (TGC→GGC) | yicI → | alpha‑xylosidase |
| RA | 3,810,054 | T→G | 21.0% | intergenic (‑96/+25) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,810,059 | A→T | 8.7% | intergenic (‑101/+20) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,810,061 | C→T | 16.0% | intergenic (‑103/+18) | Y75_RS18905 ← / ← xanP | AsmA family protein/xanthine/proton symporter XanP |
| RA | 3,821,079 | C→A | 5.4% | A155S (GCC→TCC) | Y75_RS18950 ← | trimeric intracellular cation channel family protein |
| RA | 3,844,609 | T→G | 7.1% | D293A (GAC→GCC) | rfaF ← | ADP‑heptose‑‑LPS heptosyltransferase RfaF |
| RA | 3,848,072 | A→G | 5.8% | D70G (GAT→GGT) | kbl → | glycine C‑acetyltransferase |
| RA | 3,848,099 | T→G | 6.2% | V79G (GTG→GGG) | kbl → | glycine C‑acetyltransferase |
| RA | 3,849,617 | C→G | 9.0% | A183G (GCG→GGG) | tdh → | L‑threonine 3‑dehydrogenase |
| RA | 3,849,619 | A→G | 7.7% | K184E (AAA→GAA) | tdh → | L‑threonine 3‑dehydrogenase |
| RA | 3,852,372 | G→A | 8.7% | F410F (TTC→TTT) | envC ← | murein hydrolase activator EnvC |
| RA | 3,854,542 | T→G | 6.1% | D205A (GAC→GCC) | gpmM ← | 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,857,494 | C→G | 17.9% | G247G (GGC→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,496 | A→G | 28.4% | D248G (GAT→GGT) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,498 | C→T | 17.6% | L249L (CTG→TTG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,502 | T→G | 21.4% | V250G (GTG→GGG) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,516 | G→C | 11.0% | D255H (GAC→CAC) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,525 | T→G | 11.3% | S258A (TCG→GCG) ‡ | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,526 | C→G | 8.6% | S258W (TCG→TGG) ‡ | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,857,528 | C→G | 11.0% | R259G (CGT→GGT) | gpsA → | NAD(P)H‑dependent glycerol‑3‑phosphate dehydrogenase |
| RA | 3,858,404 | T→G | 9.7% | G184G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,410 | T→G | 8.8% | G186G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,449 | T→G | 12.4% | G199G (GGT→GGG) | cysE → | serine O‑acetyltransferase |
| RA | 3,858,494 | T→G | 14.1% | V214V (GTT→GTG) | cysE → | serine O‑acetyltransferase |
| RA | 3,860,700 | T→G | 5.9% | H221P (CAC→CCC) | lldR ← | transcriptional regulator LldR |
| RA | 3,865,744 | A→G | 9.4% | V83A (GTC→GCC) | mtlD ← | mannitol‑1‑phosphate 5‑dehydrogenase |
| RA | 3,873,168 | A→C | 5.0% | intergenic (‑85/+68) | Y75_RS19215 ← / ← Y75_RS19220 | RHS repeat protein/hypothetical protein |
| RA | 3,874,897 | A→C | 9.3% | S1112R (AGT→AGG) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,874,921 | A→C | 12.0% | S1104R (AGT→AGG) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,874,967 | A→C | 9.4% | V1089G (GTG→GGG) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,874,971 | T→C | 6.7% | S1088G (AGT→GGT) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,875,144 | T→C | 8.9% | D1030G (GAC→GGC) | Y75_RS19225 ← | RHS element protein RhsA |
| RA | 3,880,022 | T→G | 15.5% | V286G (GTC→GGC) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,026 | T→G | 11.6% | S287R (AGT→AGG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,031 | T→G | 22.2% | V289G (GTG→GGG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,033 | A→G | 22.6% | S290G (AGT→GGT) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,044 | C→G | 9.9% | G293G (GGC→GGG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,047 | C→A | 13.1% | D294E (GAC→GAA) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,880,071 | A→G | 7.2% | A302A (GCA→GCG) | selA → | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 3,885,052 | T→G | 13.3% | G383G (GGT→GGG) | Y75_RS19250 → | aldehyde dehydrogenase AldB |
| RA | 3,887,541 | A→C | 6.5% | Y295D (TAT→GAT) | Y75_RS19270 ← | LysR family transcriptional regulator |
| RA | 3,890,649 | T→G | 6.1% | T179P (ACC→CCC) | Y75_RS19285 ← | L‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,890,726 | T→C | 10.4% | E153G (GAG→GGG) | Y75_RS19285 ← | L‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,893,283 | C→T | 8.4% | A17T (GCC→ACC) | lyxK ← | L‑xylulokinase |
| RA | 3,895,071 | T→A | 8.2% | M181L (ATG→TTG) | yiaN ← | 2,3‑diketo‑L‑gulonate transporter large permease YiaN |
| RA | 3,899,467 | T→C | 7.3% | E415G (GAA→GGA) | avtA ← | valine‑‑pyruvate transaminase |
| RA | 3,908,695 | G→T | 16.2% | A197E (GCA→GAA) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,908,704 | G→T | 8.5% | P194Q (CCG→CAG) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,908,726 | G→T | 11.7% | Q187K (CAA→AAA) | Y75_RS19370 ← | D‑xylose ABC transporter substrate‑binding protein |
| RA | 3,911,739 | C→G | 7.1% | G232G (GGC→GGG) | xylB → | xylulokinase |
| RA | 3,923,975 | T→G | 6.3% | intergenic (‑107/‑46) | Y75_RS19450 ← / → Y75_RS19455 | OmpA family lipoprotein/biotin sulfoxide reductase |
| RA | 3,926,044 | C→A | 8.0% | A675D (GCC→GAC) | Y75_RS19455 → | biotin sulfoxide reductase |
| RA | 3,935,459 | A→G | 11.8% | I279V (ATT→GTT) | dppB → | dipeptide ABC transporter permease DppB |
| RA | 3,935,491 | T→G | 6.4% | G289G (GGT→GGG) | dppB → | dipeptide ABC transporter permease DppB |
| RA | 3,935,845 | A→C | 6.2% | A64A (GCA→GCC) | dppC → | dipeptide ABC transporter permease DppC |
| RA | 3,936,281 | A→T | 5.7% | N210Y (AAC→TAC) | dppC → | dipeptide ABC transporter permease DppC |
| RA | 3,941,168 | T→C | 8.2% | E345G (GAA→GGA) | bcsG ← | cellulose biosynthesis protein BcsG |
| RA | 3,942,611 | C→A | 6.7% | L449F (TTG→TTT) | bcsE ← | cellulose biosynthesis protein BcsE |
| RA | 3,953,876 | A→G | 8.9% | S879G (AGC→GGC) | bcsC → | cellulose biosynthesis protein BcsC |
| RA | 3,959,877 | A→G | 7.8% | D468G (GAT→GGT) | Y75_RS19600 → | insulinase family protein |
| RA | 3,959,883 | T→A | 5.8% | I470N (ATC→AAC) | Y75_RS19600 → | insulinase family protein |
| RA | 3,960,230 | A→C | 7.1% | V256G (GTG→GGG) | Y75_RS19605 ← | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,974,708 | T→G | 18.0% | V35G (GTT→GGT) | gadX → | acid resistance transcriptional activator GadX |
| RA | 3,994,332 | A→C | 11.2% | R233R (CGT→CGG) | Y75_RS19765 ← | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase |
| RA | 4,002,598 | A→C | 12.0% | V59G (GTA→GGA) | pitA ← | inorganic phosphate transporter PitA |
| RA | 4,021,098 | T→C | 14.8% | G42G (GGA→GGG) | Y75_RS19860 ← | rhs element protein RhsB |
| RA | 4,067,833 | G→C | 7.1% | A307A (GCG→GCC) | glgB → | 1,4‑alpha‑glucan branching enzyme |
| RA | 4,071,644 | C→A | 16.5% | N186K (AAC→AAA) | glgC → | glucose‑1‑phosphate adenylyltransferase |
| RA | 4,071,645 | G→A | 10.2% | D187N (GAT→AAT) | glgC → | glucose‑1‑phosphate adenylyltransferase |
| RA | 4,078,696 | A→G | 10.3% | G35G (GGA→GGG) | glpE → | thiosulfate sulfurtransferase GlpE |
| RA | 4,084,516 | A→G | 8.4% | E317G (GAG→GGG) | rtcA → | RNA 3'‑terminal phosphate cyclase |
| RA | 4,091,479 | C→G | 7.8% | G378G (GGC→GGG) | malQ → | 4‑alpha‑glucanotransferase |
| RA | 4,091,507 | T→G | 16.2% | C388G (TGT→GGT) | malQ → | 4‑alpha‑glucanotransferase |
| RA | 4,104,271 | T→C | 18.1% | L147P (CTC→CCC) | ompR → | two‑component system response regulator OmpR |
| RA | 4,104,281 | C→G | 13.8% | R150R (CGC→CGG) | ompR → | two‑component system response regulator OmpR |
| RA | 4,104,295 | A→G | 10.5% | E155G (GAA→GGA) | ompR → | two‑component system response regulator OmpR |
| RA | 4,108,953 | T→G | 16.5% | V326G (GTG→GGG) | Y75_RS20260 → | DUF4153 domain‑containing protein |
| RA | 4,143,164 | T→G | 8.6% | T84P (ACC→CCC) | nirC ← | nitrite transporter NirC |
| RA | 4,217,867 | G→T | 9.9% | intergenic (‑154/‑3) | Y75_RS20915 ← / → metA | acetyltransferase/homoserine O‑succinyltransferase |
| RA | 4,231,754 | A→G | 11.0% | E145G (GAG→GGG) | Y75_RS20955 → | Na/Pi cotransporter family protein |
| RA | 4,245,430 | C→A | 10.6% | G139C (GGC→TGC) | Y75_RS21020 ← | D‑xylose transporter XylE |
| RA | 4,278,382 | T→G | 8.9% | T84P (ACA→CCA) | Y75_RS21180 ← | membrane protein |
| RA | 4,278,399 | A→T | 7.7% | I78K (ATA→AAA) | Y75_RS21180 ← | membrane protein |
| RA | 4,278,433 | T→G | 10.7% | T67P (ACC→CCC) | Y75_RS21180 ← | membrane protein |
| RA | 4,283,269 | A→G | 6.4% | T401A (ACC→GCC) | Y75_RS21200 → | guanine/hypoxanthine transporter GhxP |
| RA | 4,318,214 | A→G | 8.4% | I63V (ATT→GTT) | rpiB → | bifunctional allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase RpiB |
| RA | 4,322,862 | T→C | 9.4% | E194G (GAG→GGG) | phnK ← | phosphonate C‑P lyase system protein PhnK |
| RA | 4,323,045 | T→C | 11.9% | E133G (GAG→GGG) | phnK ← | phosphonate C‑P lyase system protein PhnK |
| RA | 4,341,538 | T→C | 8.7% | M58V (ATG→GTG) | adiC ← | arginine/agmatine antiporter |
| RA | 4,341,589 | T→C | 18.3% | I41V (ATT→GTT) | adiC ← | arginine/agmatine antiporter |
| RA | 4,346,346 | A→G | 8.0% | intergenic (‑40/‑243) | melR ← / → melA | transcriptional regulator MelR/alpha‑galactosidase |
| RA | 4,371,271 | Δ2 bp | 100% | pseudogene (182‑183/1304 nt) | Y75_RS21600 ← | anaerobic C4‑dicarboxylate transporter |
| RA | 4,425,863 | A→C | 13.0% | T402P (ACC→CCC) | ulaA → | PTS ascorbate transporter subunit IIC |
| RA | 4,425,872 | A→G | 11.7% | S405G (AGT→GGT) | ulaA → | PTS ascorbate transporter subunit IIC |
| RA | 4,428,402 | T→G | 9.5% | V8G (GTA→GGA) | Y75_RS21910 → | L‑ribulose‑5‑phosphate 4‑epimerase UlaF |
| RA | 4,435,025 | A→G | 10.5% | E161G (GAG→GGG) | cycA → | D‑serine/D‑alanine/glycine transporter |
| RA | 4,449,044 | T→G | 10.2% | C85G (TGC→GGC) | tamB → | autotransporter assembly complex protein TamB |
| RA | 4,449,369 | T→G | 7.6% | V193G (GTG→GGG) | tamB → | autotransporter assembly complex protein TamB |
| RA | 4,463,104 | A→C | 11.4% | T156P (ACC→CCC) | pmbA → | metalloprotease PmbA |
| RA | 4,463,110 | A→C | 16.0% | T158P (ACC→CCC) | pmbA → | metalloprotease PmbA |
| RA | 4,479,395 | T→G | 14.9% | *198G (TGA→GGA) | Y75_RS22170 → | TetR/AcrR family transcriptional regulator |
| RA | 4,533,946 | T→G | 9.9% | L326F (TTA→TTC) | Y75_RS22455 ← | PTS system EIIC permease component |
| RA | 4,595,559 | T→C | 14.4% | D134G (GAC→GGC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | 4,595,570 | A→C | 12.5% | G130G (GGT→GGG) | btsT ← | pyruvate/proton symporter BtsT |
| RA | 4,599,482 | T→G | 7.8% | intergenic (‑80/+135) | Y75_RS22770 ← / ← Y75_RS22775 | MFS transporter/GntR family transcriptional regulator |
| RA | 4,612,534 | T→G | 10.1% | S18A (TCG→GCG) | holD → | DNA polymerase III subunit psi |
| RA | 4,612,601 | T→G | 16.4% | V40G (GTG→GGG) | holD → | DNA polymerase III subunit psi |
| RA | 4,631,348 | A→C | 9.5% | T253P (ACC→CCC) | radA → | DNA repair protein RadA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 1301041–1302370 | 1302407 | 38–1367 | 178 [0] | [0] 175 | Y75_RS06530–Y75_RS06530 | Y75_RS06530,Y75_RS06530 |
| * | * | ÷ | NC_007779 | 1397908–1398957 | 1406267 | 7311–8360 | 54 [48] | [0] 200 | [Y75_RS07025]–[Y75_RS07065] | [Y75_RS07025],Y75_RS07030,uspE,Y75_RS07040,ogt,abgT,Y75_RS07060,[Y75_RS07065] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 225456 = | 63 (0.330) | 8 (0.040) | 4/408 | NT | 11.7% | noncoding (76/77 nt) | Y75_RS01025 | tRNA‑Ile |
| ? | NC_007779 | = 3599444 | NA (NA) | intergenic (‑23/+20) | Y75_RS17865/Y75_RS17870 | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_007779 | 273180 = | NA (NA) | 237 (1.240) | 110/424 | NT | 100% | intergenic (+3/+145) | Y75_RS01330/Y75_RS01335 | hypothetical protein/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 701988 = | 0 (0.000) | coding (29/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 314625 = | NA (NA) | 8 (0.040) | 7/400 | NT | NA | coding (111/300 nt) | Y75_RS24740 | transposase |
| ? | NC_007779 | 314851 = | NA (NA) | coding (41/867 nt) | Y75_RS01555 | IS3 family transposase | |||||
| * | ? | NC_007779 | = 654213 | 0 (0.000) | 141 (0.750) | 81/416 | NT | 100% | pseudogene (1/408 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC |
| ? | NC_007779 | 655413 = | 0 (0.000) | pseudogene (978/981 nt) | dcuC | anaerobic C4‑dicarboxylate transporter DcuC | |||||
| * | ? | NC_007779 | = 689467 | NA (NA) | 133 (0.690) | 74/426 | NT | 100% | intergenic (‑32/+298) | Y75_RS03405/lnt | IS5‑like element IS5 family transposase/apolipoprotein N‑acyltransferase |
| ? | NC_007779 | = 701992 | 0 (0.000) | coding (25/1221 nt) | nagC | DNA‑binding transcriptional regulator NagC | |||||
| * | ? | NC_007779 | 762538 = | 142 (0.740) | 12 (0.070) | 6/398 | NT | 8.2% | coding (595/1218 nt) | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase |
| ? | NC_007779 | 762762 = | 135 (0.750) | coding (819/1218 nt) | odhB | 2‑oxoglutarate dehydrogenase complex dihydrolipoyllysine‑residue succinyltransferase | |||||
| * | ? | NC_007779 | 1209367 = | 94 (0.490) | 109 (0.610) | 73/394 | NT | 62.7% | coding (290/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | 1211196 = | 43 (0.240) | intergenic (‑6/‑66) | Y75_RS06035/pinE | tail fiber protein/site‑specific DNA recombinase | |||||
| * | ? | NC_007779 | = 1209382 | 91 (0.470) | 109 (0.610) | 65/394 | NT | 63.2% | coding (305/630 nt) | Y75_RS06020 | hypothetical protein |
| ? | NC_007779 | = 1211179 | 43 (0.240) | coding (12/495 nt) | Y75_RS06035 | tail fiber protein | |||||
| * | ? | NC_007779 | = 1301040 | 0 (0.000) | 148 (0.880) +28 bp |
77/370 | NT | 100% | intergenic (+218/‑45) | ychE/Y75_RS06530 | NAAT family transporter YchE/IS3‑like element IS2 family transposase |
| ? | NC_007779 | = 4311564 | NA (NA) | pseudogene (914/921 nt) | alsK | allose kinase | |||||
| * | ? | NC_007779 | 1302408 = | 0 (0.000) | 170 (0.880) | 99/426 | NT | 100% | intergenic (+50/‑488) | Y75_RS06530/oppA | IS3‑like element IS2 family transposase/oligopeptide ABC transporter substrate‑binding protein OppA |
| ? | NC_007779 | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/Y75_RS07025 | low conductance mechanosensitive channel YnaI/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1397443 = | 90 (0.470) | 21 (0.110) | 19/426 | NT | 18.9% | coding (194/1032 nt) | ynaI | low conductance mechanosensitive channel YnaI |
| ? | NC_007779 | = 1398952 | NA (NA) | intergenic (+146/‑127) | Y75_RS07025/Y75_RS07030 | IS5‑like element IS5 family transposase/DUF2534 family protein | |||||
| * | ? | NC_007779 | = 1397446 | 90 (0.470) | 25 (0.130) | 20/426 | NT | 21.7% | coding (191/1032 nt) | ynaI | low conductance mechanosensitive channel YnaI |
| ? | NC_007779 | 2176983 = | NA (NA) | intergenic (‑3/‑32) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | 1406268 = | 0 (0.000) | 196 (1.020) | 106/426 | NT | 100% | coding (12/1311 nt) | Y75_RS07065 | p‑aminobenzoyl‑glutamate hydrolase subunit AbgA |
| ? | NC_007779 | 1980209 = | NA (NA) | intergenic (‑298/+146) | flhD/Y75_RS09980 | flagellar transcriptional regulator FlhD/IS5‑like element IS5 family transposase | |||||
| * | ? | NC_007779 | = 1799309 | 93 (0.480) | 5 (0.030) | 5/410 | NT | 6.8% | coding (350/2388 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta |
| ? | NC_007779 | = 1799488 | 48 (0.260) | coding (171/2388 nt) | pheT | phenylalanine‑‑tRNA ligase subunit beta | |||||
| * | ? | NC_007779 | 1885208 = | 155 (0.800) | 28 (0.150) | 24/426 | NT | 15.3% | coding (307/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | 2411458 = | NA (NA) | intergenic (‑147/+15) | lrhA/Y75_RS12035 | transcriptional regulator LrhA/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | = 1885215 | 157 (0.810) | 18 (0.090) | 15/426 | NT | 10.3% | coding (314/1446 nt) | Y75_RS09485 | BCCT family transporter |
| ? | NC_007779 | = 2412225 | NA (NA) | intergenic (‑55/‑782) | Y75_RS12035/Y75_RS12040 | IS1‑like element IS1A family transposase/alanine transaminase AlaA | |||||
| * | ? | NC_007779 | 2071816 = | NA (NA) | 18 (0.090) | 6/420 | NT | 69.5% | coding (187/914 nt) | Y75_RS10480 | IS3‑like element IS2 family transposase |
| ? | NC_007779 | 2072208 = | 8 (0.040) | coding (155/361 nt) | Y75_RS10480 | IS3‑like element IS2 family transposase | |||||
| * | ? | NC_007779 | = 2176982 | 0 (0.000) | 219 (1.160) | 106/416 | NT | 100% | intergenic (‑2/‑33) | gatA/Y75_RS10980 | PTS galactitol transporter subunit IIA/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 2178182 = | 0 (0.000) | pseudogene (202/207 nt) | gatA | PTS galactitol transporter subunit IIA | |||||
| * | ? | NC_007779 | = 2712485 | 183 (0.950) | 11 (0.060) | 10/404 | NT | 6.4% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NC_007779 | = 2712564 | 147 (0.800) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NC_007779 | = 3262327 | NA (NA) | 18 (0.090) | 17/424 | NT | 10.7% | intergenic (+145/+4) | Y75_RS16205/tdcD | IS5‑like element IS5 family transposase/propionate kinase |
| ? | NC_007779 | = 3360311 | 151 (0.780) | coding (1259/1419 nt) | Y75_RS16700 | glutamate synthase subunit GltD | |||||
| * | ? | NC_007779 | = 3746910 | 1 (0.010) | 181 (0.960) | 90/418 | NT | 99.7% | intergenic (‑2/‑33) | Y75_RS18580/Y75_RS18585 | tryptophan permease/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 3748110 = | 0 (0.000) | pseudogene (871/873 nt) | tnaB | low affinity tryptophan permease TnaB | |||||
| * | ? | NC_007779 | 3748316 = | 2 (0.010) | 435 (2.260) | 156/426 | NT | 99.5% | pseudogene (665/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | = 4056987 | NA (NA) | coding (391/417 nt) | Y75_RS20060 | hypothetical protein | |||||
| * | ? | NC_007779 | = 3748324 | 3 (0.020) | 208 (1.080) | 112/426 | NT | 98.6% | pseudogene (657/873 nt) | tnaB | low affinity tryptophan permease TnaB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | = 3750590 | 0 (0.000) | 384 (2.030) | 136/418 | NT | 100% | intergenic (‑104/‑33) | tnaA/Y75_RS18600 | tryptophanase/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | Y75_RS18600/tnaC | IS5‑like element IS5 family transposase/tryptophanase leader peptide | |||||
| * | ? | NC_007779 | 3800281 = | 440 (2.280) | 65 (0.340) | 49/426 | NT | 12.9% | intergenic (‑81/‑141) | Y75_RS18860/nlpA | hypothetical protein/lipoprotein NlpA |
| ? | NC_007779 | = 4056987 | NA (NA) | coding (391/417 nt) | Y75_RS20060 | hypothetical protein | |||||
| * | ? | NC_007779 | = 3949333 | 229 (1.190) | 219 (1.140) | 105/426 | NT | 48.9% | coding (1526/2340 nt) | bcsB | cellulose biosynthesis cyclic di‑GMP‑binding regulatory protein BcsB |
| ? | NC_007779 | 4056220 = | NA (NA) | intergenic (‑209/+15) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase | |||||
| * | ? | NC_007779 | 4056221 = | NA (NA) | 143 (0.750) | 74/424 | NT | 98.6% | intergenic (‑210/+14) | Y75_RS25055/Y75_RS20055 | hypothetical protein/IS1‑like element IS1A family transposase |
| ? | NC_007779 | 4370787 = | 2 (0.010) | pseudogene (667/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4056987 | NA (NA) | 209 (1.080) | 110/426 | NT | 98.6% | coding (391/417 nt) | Y75_RS20060 | hypothetical protein |
| ? | NC_007779 | = 4370795 | 3 (0.020) | pseudogene (659/1304 nt) | Y75_RS21600 | anaerobic C4‑dicarboxylate transporter | |||||
| * | ? | NC_007779 | = 4310362 | 0 (0.000) | 207 (1.090) | 87/418 | NT | 100% | intergenic (‑286/‑33) | yjcS/Y75_RS21310 | alkyl sulfatase YjcS/IS5‑like element IS5 family transposase |
| ? | NC_007779 | 4311562 = | 0 (0.000) | pseudogene (916/921 nt) | alsK | allose kinase | |||||