mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 44,293 | Δ1 bp | 100% | intergenic (+124/‑367) | oprD_1 → / → czcR_2 | Porin D/Transcriptional activator protein CzcR |
| RA | 120,975 | Δ1 bp | 100% | intergenic (+272/+100) | polA → / ← engB | DNA polymerase I/putative GTP‑binding protein EngB |
| RA | 169,760 | A→C | 9.2% | intergenic (+724/+2963) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 169,792 | G→A | 7.3% | intergenic (+756/+2931) | PP_RS08750 → / ← fhuA_1 | tRNA‑Val/Ferrichrome outer membrane transporter/phagereceptor |
| RA | 179,484 | T→C | 100% | C316R (TGC→CGC) | CJ019_00182 → | hypothetical protein |
| RA | 194,699 | G→C | 5.8% | V3186V (GTG→GTC) | CJ019_00185 → | hypothetical protein |
| RA | 260,050 | G→A | 10.6% | R238H (CGC→CAC) | rssB_1 → | Regulator of RpoS |
| RA | 299,787 | C→A | 5.1% | H218Q (CAC→CAA) | hslO → | 33 kDa chaperonin |
| RA | 318,084 | G→C | 19.0% | P107P (CCG→CCC) | oprD_3 → | Porin D |
| RA | 365,722 | A→C | 22.9% | intergenic (+92/‑87) | stcD_1 → / → CJ019_00339 | putative N‑methylproline demethylase/hypothetical protein |
| RA | 397,442 | G→A | 5.2% | D555D (GAC→GAT) | CJ019_00365 ← | hypothetical protein |
| RA | 426,038 | A→C | 44.2% | intergenic (+13/+34) | rssB_2 → / ← glcB | Regulator of RpoS/Malate synthase G |
| RA | 440,351 | T→A | 18.0% | intergenic (+181/‑121) | dmdC_1 → / → CJ019_00398 | 3‑methylmercaptopropionyl‑CoA dehydrogenase/hypothetical protein |
| RA | 444,535 | A→C | 16.2% | L130V (TTG→GTG) | hdfR_1 ← | HTH‑type transcriptional regulator HdfR |
| RA | 478,896 | T→G | 28.2% | D30A (GAC→GCC) | apaH_1 ← | Bis(5'‑nucleosyl)‑tetraphosphatase, symmetrical |
| RA | 539,482 | A→T | 14.6% | V87V (GTA→GTT) | rpsL → | 30S ribosomal protein S12 |
| RA | 594,746 | C→T | 6.0% | S347S (AGC→AGT) | ribD → | Riboflavin biosynthesis protein RibD |
| RA | 673,246 | G→A | 7.0% | A361A (GCG→GCA) | fadI → | 3‑ketoacyl‑CoA thiolase FadI |
| RA | 690,144 | A→G | 100% | intergenic (+21/‑2438) | bauC → / → PP_RS08750 | Putative 3‑oxopropanoate dehydrogenase/tRNA‑Val |
| RA | 891,894 | G→A | 5.9% | A64T (GCC→ACC) | CJ019_00856 → | hypothetical protein |
| RA | 924,303 | T→G | 27.0% | D4790A (GAC→GCC) | CJ019_00881 ← | hypothetical protein |
| RA | 930,475 | T→G | 14.6% | T2733P (ACC→CCC) | CJ019_00881 ← | hypothetical protein |
| RA | 932,023 | T→G | 14.7% | T2217P (ACC→CCC) | CJ019_00881 ← | hypothetical protein |
| RA | 968,666 | C→G | 5.4% | G175R (GGC→CGC) | suhB ← | Inositol‑1‑monophosphatase |
| RA | 1,092,469 | A→C | 21.9% | V50G (GTC→GGC) | kdsD ← | Arabinose 5‑phosphate isomerase KdsD |
| RA | 1,123,238 | C→A | 100% | intergenic (‑240/+64) | gcvH_1 ← / ← CJ019_01062 | Glycine cleavage system H protein/hypothetical protein |
| RA | 1,138,494 | T→G | 43.0% | intergenic (‑108/+33) | pigA_1 ← / ← hemR | Heme oxygenase PigA/Hemin receptor |
| RA | 1,157,983 | A→C | 22.3% | S162A (TCG→GCG) | hexR_1 ← | HTH‑type transcriptional regulator HexR |
| RA | 1,166,043 | G→A | 5.5% | L21L (CTC→CTT) | xseA ← | Exodeoxyribonuclease 7 large subunit |
| RA | 1,195,943 | T→G | 11.9% | V236G (GTT→GGT) | CJ019_01125 → | hypothetical protein |
| RA | 1,313,950 | T→G | 33.8% | R612R (AGG→CGG) | CJ019_01235 ← | hypothetical protein |
| RA | 1,339,139 | T→G | 20.9% | *269C (TGA→TGC) | udh ← | Uronate dehydrogenase |
| RA | 1,348,419 | T→G | 26.4% | D4A (GAC→GCC) | CJ019_01261 ← | hypothetical protein |
| RA | 1,388,322 | T→G | 46.5% | L336V (TTG→GTG) | ruvB_1 → | Holliday junction ATP‑dependent DNA helicaseRuvB |
| RA | 1,468,051 | A→C | 35.4% | intergenic (‑777/+24) | algD ← / ← yaaA | GDP‑mannose 6‑dehydrogenase/Peroxide stress resistance protein YaaA |
| RA | 1,508,400 | C→G | 5.3% | R93R (CGC→CGG) | ftsI → | Peptidoglycan D,D‑transpeptidase FtsI |
| RA | 1,522,272 | A→C | 22.4% | Q80P (CAG→CCG) | ftsZ → | Cell division protein FtsZ |
| RA | 1,523,476 | A→C | 24.7% | D45A (GAC→GCC) | lpxC → | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase |
| RA | 1,528,308 | A→C | 24.7% | P87P (CCA→CCC) | argJ → | Arginine biosynthesis bifunctional protein ArgJ |
| JC | 1,543,310 | Δ3 bp | 5.3% | coding (654‑656/1641 nt) | groL → | 60 kDa chaperonin |
| RA | 1,544,643 | T→G | 33.0% | Q412P (CAG→CCG) | pykA ← | Pyruvate kinase II |
| RA | 1,567,478 | A→G | 6.1% | V126V (GTA→GTG) | CJ019_01477 → | hypothetical protein |
| RA | 1,584,539 | A→C | 23.4% | G137G (GGT→GGG) | rhaS_1 ← | HTH‑type transcriptional activator RhaS |
| RA | 1,630,540 | A→C | 31.0% | L419R (CTG→CGG) | czcS ← | Sensor protein CzcS |
| RA | 1,670,685 | A→C | 31.2% | intergenic (+22/‑109) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,670,690 | A→C | 29.0% | intergenic (+27/‑104) | thrC_2 → / → CJ019_01569 | Threonine synthase/hypothetical protein |
| RA | 1,716,354 | T→C | 5.5% | L644P (CTG→CCG) | mdtB_1 → | Multidrug resistance protein MdtB |
| RA | 1,718,463 | T→G | 36.3% | Q65P (CAG→CCG) | CJ019_01614 ← | hypothetical protein |
| RA | 1,721,870 | A→C | 30.9% | V98G (GTC→GGC) | CJ019_01617 ← | hypothetical protein |
| RA | 1,763,975 | A→C | 13.4% | N556T (AAC→ACC) | CJ019_01678 → | hypothetical protein |
| RA | 1,791,678 | T→G | 31.9% | L182R (CTG→CGG) | lpxB → | Lipid‑A‑disaccharide synthase |
| RA | 1,791,684 | T→G | 22.8% | L184R (CTG→CGG) | lpxB → | Lipid‑A‑disaccharide synthase |
| RA | 1,804,932 | C→T | 100% | S181N (AGC→AAC) | dmlR_4 ← | HTH‑type transcriptional regulator DmlR |
| RA | 1,834,917 | T→G | 27.3% | T35P (ACC→CCC) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,934,465 | C→G | 17.0% | intergenic (‑156/‑54) | CJ019_01849 ← / → CJ019_01850 | hypothetical protein/hypothetical protein |
| RA | 1,947,503 | G→A | 5.4% | R257H (CGC→CAC) | CJ019_01861 → | Polyphosphate:AMP phosphotransferase |
| RA | 2,016,038 | A→G | 6.5% | S5G (AGC→GGC) | tld → | GDP‑6‑deoxy‑D‑talose 4‑dehydrogenase |
| RA | 2,048,228 | G→A | 5.6% | P104P (CCG→CCA) | aroC → | Chorismate synthase |
| RA | 2,085,482 | C→G | 24.4% | intergenic (+71/+20) | deaD → / ← ygiD | ATP‑dependent RNA helicase DeaD/4,5‑DOPA dioxygenase extradiol |
| RA | 2,086,880 | C→G | 13.1% | V170V (GTC→GTG) | tpm → | Thiopurine S‑methyltransferase |
| RA | 2,094,808 | A→C | 53.6% | L186R (CTG→CGG) | CJ019_01995 ← | hypothetical protein |
| RA | 2,094,817 | T→G | 43.4% | Q183P (CAG→CCG) | CJ019_01995 ← | hypothetical protein |
| RA | 2,103,046 | C→T | 6.5% | A1433T (GCC→ACC) | CJ019_02004 ← | hypothetical protein |
| RA | 2,131,359 | T→G | 27.5% | R135R (CGT→CGG) | yadG → | putative ABC transporter ATP‑binding proteinYadG |
| RA | 2,299,276 | T→G | 20.3% | N113T (AAC→ACC) | CJ019_02179 ← | hypothetical protein |
| RA | 2,358,743 | T→G | 25.3% | L41R (CTG→CGG) | CJ019_02230 → | hypothetical protein |
| RA | 2,364,172 | C→G | 6.6% | T1311T (ACC→ACG) | gdhB → | NAD‑specific glutamate dehydrogenase |
| RA | 2,379,994 | T→G | 20.4% | Q56P (CAG→CCG) | nrtA ← | Nitrate/nitrite binding protein NrtA |
| RA | 2,416,103 | C→T | 5.6% | R377H (CGC→CAC) | CJ019_02281 ← | hypothetical protein |
| RA | 2,526,900 | C→T | 5.4% | Q88Q (CAG→CAA) | CJ019_02384 ← | hypothetical protein |
| RA | 2,569,872 | A→C | 38.2% | L518R (CTG→CGG) | acoR_3 ← | Acetoin catabolism regulatory protein |
| RA | 2,770,096 | A→C | 27.9% | W156G (TGG→GGG) | CJ019_02613 ← | hypothetical protein |
| RA | 2,847,475 | A→T | 6.4% | Q62L (CAG→CTG) | CJ019_02703 → | hypothetical protein |
| RA | 2,856,886 | T→G | 100% | S297A (TCG→GCG) | hdfR_4 → | HTH‑type transcriptional regulator HdfR |
| RA | 2,965,146 | T→G | 27.0% | intergenic (+37/+72) | CJ019_02796 → / ← kstD_1 | hypothetical protein/3‑oxosteroid 1‑dehydrogenase |
| RA | 3,204,513 | G→C | 29.4% | E165Q (GAA→CAA) | CJ019_03009 → | hypothetical protein |
| RA | 3,218,100 | C→T | 6.8% | A126T (GCG→ACG) | nodD2_2 ← | Nodulation protein D 2 |
| RA | 3,238,596 | C→A | 6.2% | intergenic (‑45/‑171) | CJ019_03036 ← / → xerC_2 | hypothetical protein/Tyrosine recombinase XerC |
| RA | 3,255,897 | A→C | 28.4% | intergenic (‑152/+72) | pnuC ← / ← mcpP | Nicotinamide riboside transporter PnuC/Methyl‑accepting chemotaxis protein McpP |
| RA | 3,267,810 | T→G | 33.6% | L171V (TTG→GTG) | eamA → | putative amino‑acid metabolite efflux pump |
| RA | 3,300,105 | A→C | 30.4% | L184R (CTC→CGC) | glaR ← | HTH‑type transcriptional repressor GlaR |
| RA | 3,312,451 | A→C | 46.7% | L251R (CTG→CGG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,312,455 | A→C | 24.3% | S250A (TCG→GCG) | cynR_3 ← | HTH‑type transcriptional regulator CynR |
| RA | 3,338,755 | A→T | 6.7% | Y268N (TAT→AAT) | rssB_4 ← | Regulator of RpoS |
| RA | 3,389,709 | T→G | 32.4% | L121R (CTG→CGG) | yfdE → | Acetyl‑CoA:oxalate CoA‑transferase |
| RA | 3,432,092 | C→G | 17.8% | intergenic (+51/‑44) | CJ019_03257 → / → gpFI | hypothetical protein/Putative prophage major tail sheath protein |
| RA | 3,465,424 | T→G | 22.9% | A41A (GCA→GCC) | fcuA_1 ← | Ferrichrome receptor FcuA |
| RA | 3,473,321 | G→T | 5.5% | Q319K (CAG→AAG) | ompA_2 ← | Outer membrane protein A |
| RA | 3,491,319 | A→C | 35.7% | intergenic (‑681/+40) | CJ019_03306 ← / ← CJ019_03307 | hypothetical protein/hypothetical protein |
| RA | 3,494,162 | G→A | 6.7% | intergenic (‑324/‑162) | CJ019_03310 ← / → CJ019_03311 | hypothetical protein/hypothetical protein |
| RA | 3,584,770 | G→T | 6.8% | W303C (TGG→TGT) | CJ019_03397 → | hypothetical protein |
| RA | 3,626,095 | T→G | 47.8% | G170G (GGT→GGG) | hcf136_3 → | Ycf48‑like protein |
| RA | 3,697,188 | G→A | 5.4% | P624L (CCG→CTG) | paaZ_2 ← | Bifunctional protein PaaZ |
| RA | 3,761,329 | A→C | 26.6% | E96A (GAG→GCG) | CJ019_03574 → | hypothetical protein |
| RA | 3,773,715 | C→A | 5.8% | T370K (ACA→AAA) | nikA → | Nickel‑binding periplasmic protein |
| RA | 3,912,334 | A→C | 26.6% | E824A (GAG→GCG) | mexB_2 → | Multidrug resistance protein MexB |
| RA | 3,937,715 | C→T | 6.2% | R109H (CGC→CAC) | CJ019_03722 ← | hypothetical protein |
| RA | 3,944,425 | T→G | 28.3% | E86A (GAG→GCG) | CJ019_03729 ← | hypothetical protein |
| RA | 3,957,240 | C→T | 100% | G137R (GGG→AGG) | dmlR_13 ← | HTH‑type transcriptional regulator DmlR |
| RA | 3,969,760 | A→C | 51.6% | A251A (GCT→GCG) | CJ019_03750 ← | putative protein |
| RA | 3,974,886 | A→C | 21.6% | V154G (GTC→GGC) | CJ019_03752 ← | hypothetical protein |
| RA | 3,986,089 | A→G | 5.5% | Y209H (TAT→CAT) | CJ019_03763 ← | hypothetical protein |
| RA | 3,986,621 | A→C | 33.2% | D31E (GAT→GAG) ‡ | CJ019_03763 ← | hypothetical protein |
| RA | 3,986,622 | T→G | 32.4% | D31A (GAT→GCT) ‡ | CJ019_03763 ← | hypothetical protein |
| RA | 4,029,454 | A→C | 27.3% | D287A (GAC→GCC) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,029,468 | A→C | 17.8% | T292P (ACC→CCC) | mcpU_3 → | Methyl‑accepting chemotaxis protein McpU |
| RA | 4,111,471 | A→C | 16.5% | T172T (ACA→ACC) | iorB_2 → | Isoquinoline 1‑oxidoreductase subunit beta |
| RA | 4,135,592 | A→C | 24.3% | N27T (AAC→ACC) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,607 | A→C | 37.0% | Q32P (CAG→CCG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,135,612 | T→G | 33.4% | W34G (TGG→GGG) | tgnC → | (Z)‑2‑((N‑methylformamido)methylene)‑5‑hydroxybu tyrolactone dehydrogenase |
| RA | 4,151,792 | G→A | 5.3% | G53S (GGT→AGT) | CJ019_03909 → | hypothetical protein |
| RA | 4,245,134 | A→C | 27.9% | L182V (TTG→GTG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| RA | 4,245,145 | A→C | 43.5% | L178R (CTG→CGG) | CJ019_03982 ← | Crotonyl‑CoA hydratase |
| JC | 4,257,351 | +CGCGGCCG | 100% | intergenic (‑280/+8) | CJ019_03991 ← / ← CJ019_03994 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| RA | 4,277,043 | T→G | 36.0% | G278G (GGT→GGG) | hbd → | 3‑hydroxybutyryl‑CoA dehydrogenase |
| RA | 4,329,199 | G→T | 5.8% | V75V (GTG→GTT) | aes → | Acetyl esterase |
| RA | 4,350,051 | A→G | 6.5% | L26S (TTG→TCG) | tcrX ← | putative transcriptional regulatory proteinTcrX |
| RA | 4,359,633 | C→T | 6.1% | R10H (CGC→CAC) | CJ019_04105 ← | Beta‑peptidyl aminopeptidase BapA |
| RA | 4,373,169 | G→A | 7.3% | A412V (GCG→GTG) | CJ019_04121 ← | hypothetical protein |
| RA | 4,500,221 | A→C | 33.9% | G58G (GGT→GGG) | cysG_1 ← | Siroheme synthase |
| RA | 4,500,241 | A→C | 32.0% | L52V (TTG→GTG) | cysG_1 ← | Siroheme synthase |
| RA | 4,681,221 | A→C | 29.4% | Q162P (CAG→CCG) | yejF → | putative ABC transporter ATP‑binding proteinYejF |
| RA | 4,845,620 | T→G | 51.1% | intergenic (+47/+72) | apt → / ← recR | Adenine phosphoribosyltransferase/Recombination protein RecR |
| RA | 4,874,709 | A→C | 34.2% | intergenic (+13/‑174) | CJ019_04568 → / → uacT_1 | hypothetical protein/Uric acid transporter UacT |
| RA | 4,880,375 | T→G | 33.5% | E92A (GAG→GCG) | CJ019_04574 ← | hypothetical protein |
| RA | 4,894,035 | T→G | 32.8% | intergenic (+31/‑467) | lrpC → / → pucI_2 | HTH‑type transcriptional regulator LrpC/putative allantoin permease |
| RA | 4,917,312 | C→T | 7.1% | E283E (GAG→GAA) | CJ019_04613 ← | hypothetical protein |
| RA | 5,003,043 | G→A | 7.1% | R5K (AGA→AAA) | CJ019_04696 → | hypothetical protein |
| RA | 5,097,064 | C→G | 40.6% | intergenic (+28/‑162) | CJ019_04792 → / → CJ019_04793 | Putative pterin‑4‑alpha‑carbinolaminedehydratase/hypothetical protein |
| RA | 5,171,928 | A→G | 6.9% | Y15H (TAC→CAC) | CJ019_04861 ← | hypothetical protein |
| RA | 5,252,157 | T→G | 25.8% | D323A (GAC→GCC) | fabV ← | Enoyl‑[acyl‑carrier‑protein] reductase [NADH] |
| RA | 5,262,927 | T→G | 54.0% | intergenic (+27/+9) | uacT_2 → / ← radA | Uric acid transporter UacT/DNA repair protein RadA |
| RA | 5,267,395 | A→C | 19.2% | S192R (AGC→CGC) | rlmG → | Ribosomal RNA large subunit methyltransferase G |
| RA | 5,478,784 | G→A | 5.4% | M299I (ATG→ATA) | purD → | Phosphoribosylamine‑‑glycine ligase |
| RA | 5,562,303 | A→C | 17.8% | L220R (CTG→CGG) | nnr ← | Bifunctional NAD(P)H‑hydrate repair enzyme Nnr |
| RA | 5,684,640 | T→G | 33.1% | P120P (CCT→CCG) | CJ019_05336 → | hypothetical protein |
| RA | 5,756,055 | Δ1 bp | 100% | coding (776/834 nt) | CJ019_05400 → | hypothetical protein |
| RA | 5,762,814 | C→T | 5.5% | L228L (CTG→CTA) | CJ019_05404 ← | hypothetical protein |
| RA | 5,778,681 | C→T | 5.5% | T343T (ACC→ACT) | selO → | Protein adenylyltransferase SelO |
| RA | 5,798,711 | A→C | 18.1% | N215T (AAC→ACC) | mrcA → | Penicillin‑binding protein 1A |
| RA | 5,859,935 | C→T | 6.4% | E143K (GAG→AAG) | thyA ← | Thymidylate synthase |
| RA | 5,921,203 | G→A | 8.2% | L168L (CTG→TTG) | CJ019_05543 ← | putative binding protein component of ABC iron transporter |
| RA | 5,974,074 | A→C | 63.9% | Q688P (CAG→CCG) | sasA_19 → | Adaptive‑response sensory‑kinase SasA |
| RA | 6,001,307 | A→C | 28.0% | S313R (AGC→CGC) | mdtK → | Multidrug resistance protein MdtK |
| RA | 6,020,335 | T→G | 39.7% | S60R (AGC→CGC) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,020,340 | A→C | 35.1% | L58R (CTG→CGG) | ycaD_4 ← | putative MFS‑type transporter YcaD |
| RA | 6,048,901 | C→G | 6.5% | I124M (ATC→ATG) | oxyR → | Hydrogen peroxide‑inducible genes activator |
| RA | 6,072,767 | A→G | 6.1% | I19V (ATC→GTC) | yeaD_2 → | Putative glucose‑6‑phosphate 1‑epimerase |
| RA | 6,084,764 | A→C | 22.5% | N178T (AAC→ACC) | paiB → | Protease synthase and sporulation protein PAI 2 |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | ACB122 | 87964 | 88060 | 97 | 25 [23] | [16] 27 | [CJ019_00094]–[CJ019_00095] | [CJ019_00094],[CJ019_00095] |
| * | * | ÷ | ACB122 | 161217 | 161447–161316 | 100–231 | 24 [23] | [22] 29 | [uctC_1] | [uctC_1] |
| * | * | ÷ | ACB122 | 346095 | 346218 | 124 | 24 [19] | [23] 24 | [btuD_1] | [btuD_1] |
| * | * | ÷ | ACB122 | 517190 | 517317 | 128 | 34 [21] | [23] 24 | tyrS/birA | Tyrosine‑‑tRNA ligase/Bifunctional ligase/repressor BirA |
| * | * | ÷ | ACB122 | 674232 | 674386 | 155 | 25 [21] | [22] 28 | [nimR_1]–[mcpH_2] | [nimR_1],[mcpH_2] |
| * | * | ÷ | ACB122 | 1304748 | 1304869 | 122 | 24 [22] | [22] 24 | [rapA] | [rapA] |
| * | * | ÷ | ACB122 | 1376253 | 1376336 | 84 | 24 [22] | [22] 25 | CJ019_01289 | hypothetical protein |
| * | * | ÷ | ACB122 | 1585608 | 1585732 | 125 | 29 [23] | [23] 24 | [CJ019_01493]–[CJ019_01494] | [CJ019_01493],[CJ019_01494] |
| * | * | ÷ | ACB122 | 1697641 | 1697739 | 99 | 24 [22] | [21] 28 | [CJ019_01593] | [CJ019_01593] |
| * | * | ÷ | ACB122 | 1705082 | 1705206 | 125 | 24 [23] | [22] 25 | ppc/adk | Phosphoenolpyruvate carboxylase/Adenylate kinase |
| * | * | ÷ | ACB122 | 1914545 | 1914659 | 115 | 27 [22] | [21] 24 | [ppsC_1]–[CJ019_01830] | [ppsC_1],[CJ019_01830] |
| * | * | ÷ | ACB122 | 2288817 | 2288934 | 118 | 25 [21] | [20] 27 | CJ019_02171/CJ019_02172 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 2467207 | 2467225 | 19 | 29 [0] | [11] 41 | CJ019_02325/tal | hypothetical protein/Transaldolase |
| * | * | ÷ | ACB122 | 2944350 | 2944449 | 100 | 27 [8] | [22] 25 | [CJ019_02782] | [CJ019_02782] |
| * | * | ÷ | ACB122 | 3046177 | 3046347 | 171 | 24 [19] | [22] 26 | [rcsC_5]–[degU_2] | [rcsC_5],[degU_2] |
| * | * | ÷ | ACB122 | 3280231 | 3280373 | 143 | 26 [22] | [23] 26 | [CJ019_03085]–[xthA_2] | [CJ019_03085],[xthA_2] |
| * | * | ÷ | ACB122 | 3459854 | 3459932 | 79 | 28 [23] | [22] 28 | CJ019_03284 | hypothetical protein |
| * | * | ÷ | ACB122 | 3769383 | 3769491 | 109 | 25 [23] | [23] 25 | CJ019_03581/CJ019_03582 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 4163782 | 4163883 | 102 | 25 [23] | [23] 24 | katG/leuO_2 | Catalase‑peroxidase/HTH‑type transcriptional regulator LeuO |
| * | * | ÷ | ACB122 | 4330052 | 4330138 | 87 | 26 [18] | [22] 24 | [CJ019_04068] | [CJ019_04068] |
| * | * | ÷ | ACB122 | 4344767 | 4344824 | 58 | 25 [22] | [22] 24 | nmoA | Nitronate monooxygenase |
| * | * | ÷ | ACB122 | 4521596 | 4521718 | 123 | 24 [23] | [23] 25 | [CJ019_04289] | [CJ019_04289] |
| * | * | ÷ | ACB122 | 4666890 | 4667019 | 130 | 29 [23] | [22] 24 | [btuB_4] | [btuB_4] |
| * | * | ÷ | ACB122 | 4732392 | 4732543 | 152 | 24 [20] | [23] 24 | [CJ019_04468] | [CJ019_04468] |
| * | * | ÷ | ACB122 | 4944873 | 4944992 | 120 | 24 [23] | [23] 25 | [CJ019_04642] | [CJ019_04642] |
| * | * | ÷ | ACB122 | 4955866 | 4977755 | 21890 | 95 [0] | [1] 72 | [atoC_3]–flgB | [atoC_3],atoS,norR_4,CJ019_04655,fliS,fliD,CJ019_04658,CJ019_04659,fabH,CJ019_04661,CJ019_04662,CJ019_04663,flgI,flgH,flgG,flgF,CJ019_04668,flgE,flgD,flgC,flgB |
| * | * | ÷ | ACB122 | 5156434 | 5156595 | 162 | 24 [22] | [23] 25 | [CJ019_04852] | [CJ019_04852] |
| * | * | ÷ | ACB122 | 5188763 | 5188938 | 176 | 26 [23] | [23] 24 | [CJ019_04882]–[pxpC_2] | [CJ019_04882],[pxpC_2] |
| * | * | ÷ | ACB122 | 5193565 | 5193688 | 124 | 24 [23] | [23] 24 | [gltR_4]–[CJ019_04888] | [gltR_4],[CJ019_04888] |
| * | * | ÷ | ACB122 | 5550429 | 5550603 | 175 | 24 [23] | [23] 24 | CJ019_05227/purA | hypothetical protein/Adenylosuccinate synthetase |
| * | * | ÷ | ACB122 | 5645604 | 5645681 | 78 | 33 [16] | [23] 25 | CJ019_05302/CJ019_05303 | hypothetical protein/hypothetical protein |
| * | * | ÷ | ACB122 | 5890354 | 5890489 | 136 | 25 [23] | [22] 24 | CJ019_05517/czcA_3 | hypothetical protein/Cobalt‑zinc‑cadmium resistance protein CzcA |
| * | * | ÷ | ACB122 | 5895772 | 5895862 | 91 | 24 [23] | [21] 25 | [CJ019_05521] | [CJ019_05521] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ACB122 | 3359610 = | 47 (0.710) | 66 (1.000) | 43/234 | NT | 73.7% | intergenic (+219/‑151) | pikAII_1/CJ019_03160 | Narbonolide/10‑deoxymethynolide synthase PikA2,modules 3 and 4/Tn3 family transposase ISPa42 |
| ? | ACB122 | 4977756 = | 0 (0.000) | intergenic (‑238/+84) | flgB/cheR2 | Flagellar basal body rod protein FlgB/Chemotaxis protein methyltransferase Cher2 | |||||
| * | ? | ACB122 | = 3376622 | 64 (0.970) | 83 (1.290) | 44/228 | NT | 72.7% | coding (501/546 nt) | CJ019_03184 | hypothetical protein |
| ? | ACB122 | = 4955865 | 0 (0.000) | coding (538/1356 nt) | atoC_3 | Regulatory protein AtoC | |||||
| * | ? | ACB122 | = 5981427 | 41 (0.620) | 6 (0.100) | 6/218 | NT | 16.9% | intergenic (+65/‑624) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein |
| ? | ACB122 | 5981619 = | 21 (0.340) | intergenic (+257/‑432) | kefC_3/CJ019_05604 | Glutathione‑regulated potassium‑efflux systemprotein KefC/hypothetical protein | |||||