mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 45,813 | C→T | 56.5% | P3S (CCG→TCG) | yaaU → | predicted transporter |
| RA | 47,828 | A→G | 36.8% | V20V (GTA→GTG) | kefC → | potassium:proton antiporter |
| RA | 70,434 | C→T | 100% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 93.2% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 94.4% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 91.4% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 92.1% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 91.7% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 100% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 92.0% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 93.9% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 85,966 | T→C | 12.8% | F113L (TTT→CTT) | ilvI → | acetolactate synthase III, large subunit |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 230,040 | C→A | 28.5% | R281L (CGC→CTC) | yafC ← | predicted DNA‑binding transcriptional regulator |
| RA | 234,234 | C→T | 56.5% | L183L (TTG→TTA) | gloB ← | predicted hydroxyacylglutathione hydrolase |
| RA | 236,101 | A→C | 100% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 100% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 344,381 | G→A | 33.3% | intergenic (+166/‑247) | yahL → / → yahM | hypothetical protein/hypothetical protein |
| RA | 399,522 | T→A | 25.7% | D209V (GAT→GTT) | ddlA ← | D‑alanine‑D‑alanine ligase A |
| RA | 515,934 | C→T | 49.4% | A43V (GCG→GTG) | ybbM → | predicted inner membrane protein |
| RA | 539,323 | C→T | 18.7% | P318L (CCA→CTA) | allB → | allantoinase |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 579,680 | G→A | 66.7% | intergenic (+371/‑377) | ybcW → / → nohB | hypothetical protein/DNA packaging protein |
| RA | 614,426 | C→T | 18.4% | L349L (CTC→CTT) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 684,561 | A→G | 37.0% | L92L (TTA→CTA) | rihA ← | ribonucleoside hydrolase 1 |
| RA | 722,797 | C→T | 20.9% | T680T (ACG→ACA) | kdpD ← | fused sensory histidine kinase in two‑component regulatory system with KdpE |
| RA | 810,589 | T→G | 54.6% | M275R (ATG→AGG) | bioB → | biotin synthase |
| RA | 827,597 | C→T | 49.0% | P26P (CCG→CCA) | ybhS ← | predicted transporter subunit |
| RA | 921,273 | G→A | 36.5% | D169N (GAT→AAT) | macB → | fused macrolide transporter subunits and ATP‑binding component and membrane component of ABC superfamily |
| RA | 1,020,867 | A→G | 68.6% | S159P (TCC→CCC) | sulA ← | SOS cell division inhibitor |
| RA | 1,032,491 | C→T | 63.3% | intergenic (‑357/‑70) | serT ← / → hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,294,272 | C→T | 33.3% | L76L (CTG→CTA) | hns ← | global DNA‑binding transcriptional dual regulator H‑NS |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,378,032 | C→T | 100% | G95G (GGC→GGT) | ycjR → | hypothetical protein |
| RA | 1,378,050 | G→A | 100% | A101A (GCG→GCA) | ycjR → | hypothetical protein |
| RA | 1,380,993 | C→T | 37.5% | H466Y (CAT→TAT) | ycjT → | predicted hydrolase |
| RA | 1,426,674 | T→C | 39.4% | D393D (GAT→GAC) | trkG → | potassium transporter subunit |
| RA | 1,477,935 | G→A | 32.4% | E360K (GAA→AAA) | ydbD → | hypothetical protein |
| RA | 1,569,965 | T→C | 46.8% | Q191Q (CAA→CAG) | yddW ← | predicted liprotein |
| RA | 1,692,839 | G→A | 100% | G425D (GGT→GAT) | ydgA → | conserved hypothetical protein |
| RA | 1,793,630 | G→A | 25.4% | S35S (TCC→TCT) | ydiV ← | conserved hypothetical protein |
| RA | 1,833,686 | G→A | 21.9% | P4L (CCA→CTA) | astC ← | succinylornithine transaminase, PLP‑dependent |
| RA | 1,887,874 | T→C | 68.6% | F106L (TTT→CTT) | yeaX → | predicted oxidoreductase |
| RA | 1,939,329 | C→T | 27.6% | intergenic (+94/‑34) | yebK → / → pykA | predicted DNA‑binding transcriptional regulator/pyruvate kinase II |
| RA | 1,995,272 | T→C | 48.5% | S524S (TCA→TCG) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 2,077,980 | C→T | 41.7% | Y355Y (TAC→TAT) | yeeR → | predicted membrane protein |
| RA | 2,142,363 | C→T | 15.7% | G463R (GGG→AGG) | asmA ← | predicted assembly protein |
| RA | 2,157,782 | T→C | 14.8% | L128S (TTG→TCG) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,160,543 | C→T | 42.6% | F7F (TTC→TTT) | mdtC → | multidrug efflux system, subunit C |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,313,823 | T→C | 44.4% | E349G (GAA→GGA) | yojL ← | predicted thiamine biosynthesis lipoprotein |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,327,759 | T→C | 43.8% | R408R (CGT→CGC) | atoC → | fused response regulator of ato opeon, in two‑component system with AtoS |
| RA | 2,342,743 | G→A | 42.9% | L450L (CTG→TTG) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,350,543 | G→A | 35.8% | V337I (GTA→ATA) | nrdA → | ribonucleoside diphosphate reductase 1, alpha subunit |
| RA | 2,425,365 | C→A | 12.9% | L189L (CTG→CTT) | yfcF ← | hypothetical protein |
| RA | 2,428,249 | A→G | 11.1% | I246T (ATT→ACT) | yfcI ← | conserved hypothetical protein |
| RA | 2,462,408 | C→T | 18.3% | intergenic (‑150/+53) | sixA ← / ← yfcX | phosphohistidine phosphatase/fused enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, dodecenoyl‑CoA D‑isomerase, and 3‑hydroxyacyl‑CoA dehydrogenase, subunit of anaerobic fatty acid oxidation complex |
| RA | 2,501,495 | G→A | 31.2% | S135S (TCG→TCA) | ddg → | palmitoleoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| RA | 2,508,088 | C→A | 17.1% | G615V (GGC→GTC) | ypdD ← | fused predicted PTS enzymes Hpr component, enzyme I component, and enzyme IIA component |
| RA | 2,512,687 | Δ1 bp | 100% | coding (654/1248 nt) | ypdG ← | predicted enzyme IIC component of PTS |
| RA | 2,541,664 | G→A | 29.0% | E129K (GAA→AAA) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,596,338 | T→C | 27.8% | intergenic (‑64/+149) | purC ← / ← nlpB | phosphoribosylaminoimidazole‑succinocarboxamide synthetase/lipoprotein |
| RA | 2,667,558 | T→C | 35.5% | intergenic (‑6/‑130) | hcaR ← / → hcaE | DNA‑binding transcriptional regulator/3‑phenylpropionate dioxygenase, large (alpha) subunit |
| RA | 2,669,838 | T→C | 20.0% | V92A (GTT→GCT) | hcaC → | 3‑phenylpropionate dioxygenase, predicted ferredoxin subunit |
| RA | 2,759,336 | C→T | 42.7% | T45I (ACA→ATA) | yfjJ → | hypothetical protein |
| RA | 2,773,435 | T→C | 58.7% | L488L (TTG→CTG) | yfjW → | predicted inner membrane protein |
| RA | 2,794,102 | G→A | 48.1% | L398L (TTG→TTA) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,795,805 | G→T | 55.1% | intergenic (‑121/‑62) | yqaE ← / → ygaV | predicted membrane protein/predicted DNA‑binding transcriptional regulator |
| RA | 2,809,581 | G→A | 100% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,821,480 | T→C | 63.1% | T316A (ACC→GCC) | recA ← | DNA strand exchange and recombination protein with protease and nuclease activity |
| RA | 2,840,761 | A→G | 44.2% | E372E (GAA→GAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
| RA | 2,860,110 | G→A | 59.1% | V9I (GTC→ATC) | ygbJ → | predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,885,984 | C→T | 32.9% | intergenic (‑109/+250) | ygcB ← / ← cysH | conserved hypothetical protein, member of DEAD box family/3'‑phosphoadenosine 5'‑phosphosulfate reductase |
| RA | 2,904,315 | A→G | 28.0% | intergenic (‑241/‑52) | ygcF ← / → ygcG | conserved hypothetical protein/hypothetical protein |
| RA | 3,005,355 | G→A | 22.3% | K146K (AAG→AAA) | ygeW → | conserved hypothetical protein |
| RA | 3,013,681 | G→A | 16.2% | V11V (GTC→GTT) | yqeC ← | conserved hypothetical protein |
| RA | 3,090,490 | C→T | 17.6% | A234V (GCG→GTG) | yggJ → | hypothetical protein |
| RA | 3,135,166 | A→G | 49.3% | intergenic (‑139/+153) | pitB ← / ← gss | phosphate transporter/fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,304,430 | A→G | 24.2% | *415Q (TAA→CAA) | mtr ← | tryptophan transporter of high affinity |
| RA | 3,363,632 | T→C | 40.0% | F324S (TTT→TCT) | yhcD → | predicted outer membrane protein |
| RA | 3,447,843 | A→G | 40.0% | V1163V (GTT→GTC) | rpoC ← | RNA polymerase, beta prime subunit |
| RA | 3,533,727 | C→T | 17.8% | A45T (GCG→ACG) | yiiM ← | conserved hypothetical protein |
| RA | 3,573,836 | A→G | 48.5% | V200A (GTG→GCG) | yihN ← | predicted transporter |
| RA | 3,575,604 | C→T | 8.8% | A211T (GCC→ACC) | yihL ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,587,198 | C→T | 29.6% | E840K (GAA→AAA) | polA ← | fused DNA polymerase I 5'‑>3' exonuclease, 3'‑>5' polymerase and 3'‑>5' exonuclease |
| RA | 3,626,651 | G→A | 21.2% | A287A (GCC→GCT) | pldB ← | lysophospholipase L(2) |
| RA | 3,626,660 | G→T | 21.2% | L284L (CTC→CTA) | pldB ← | lysophospholipase L(2) |
| RA | 3,682,573 | G→A | 100% | L211L (CTG→TTG) | ilvD ← | dihydroxyacid dehydratase |
| RA | 3,701,087 | A→G | 100% | A103A (GCT→GCC) | rbsC ← | D‑ribose transporter subunit |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,815,914 | T→C | 37.5% | N702D (AAT→GAT) | spoT ← | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,861,751 | T→C | 9.0% | N423S (AAC→AGC) | lldP ← | L‑lactate permease |
| RA | 3,894,068 | T→C | 27.9% | M86V (ATG→GTG) | yiaO ← | predicted transporter |
| RA | 4,052,400 | T→C | 12.8% | Y33H (TAC→CAC) | ugpQ → | glycerophosphodiester phosphodiesterase, cytosolic |
| RA | 4,086,494 | C→T | 8.6% | M280I (ATG→ATA) | malT ← | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| RA | 4,152,016 | C→T | 13.2% | E538K (GAG→AAG) | yhfK ← | conserved inner membrane protein |
| RA | 4,154,666 | A→G | 37.5% | I23V (ATT→GTT) | yhfA → | conserved hypothetical protein |
| RA | 4,155,146:1 | +A | 23.4% | coding (783/870 nt) | prkB ← | predicted phosphoribulokinase |
| RA | 4,185,304 | T→C | 6.6% | T95T (ACT→ACC) | gspA → | general secretory pathway component, cryptic |
| RA | 4,217,545 | A→G | 12.6% | N57N (AAT→AAC) | yjaB ← | predicted acetyltransferase |
| RA | 4,254,714 | A→T | 32.9% | E56D (GAA→GAT) | yjbI → | conserved hypothetical protein |
| RA | 4,295,565 | T→C | 42.9% | F154F (TTT→TTC) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,338,229 | C→T | 6.7% | L134L (CTG→CTA) | basR ← | DNA‑binding response regulator in two‑component regulatory system with BasS |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,430,000 | G→A | 14.1% | P67P (CCG→CCA) | rpsF → | 30S ribosomal subunit protein S6 |
| RA | 4,491,067 | G→A | 37.2% | V56V (GTG→GTA) | yjgP → | conserved inner membrane protein |
| RA | 4,501,608 | A→G | 51.2% | K59K (AAA→AAG) | intB → | predicted integrase |
| RA | 4,547,402 | Δ1 bp | 100% | intergenic (+87/‑395) | fimE → / → fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,584,438 | T→C | 27.1% | S48G (AGT→GGT) | yjiW ← | conserved hypothetical protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2826 | 2835 | 10 | 2 [1] | [0] 2 | thrB | homoserine kinase |
| * | * | ÷ | W3110S.gb | 10451 | 10453 | 3 | 21 [0] | [0] 9 | yaaH | conserved inner membrane protein associated with acetate transport |
| * | * | ÷ | W3110S.gb | 17284 | 17299 | 16 | 5 [0] | [0] 3 | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| * | * | ÷ | W3110S.gb | 25375 | 25377 | 3 | 10 [0] | [0] 8 | lspA | prolipoprotein signal peptidase |
| * | * | ÷ | W3110S.gb | 30038 | 30042 | 5 | 13 [0] | [0] 5 | carA | carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
| * | * | ÷ | W3110S.gb | 33399 | 33399 | 1 | 2 [0] | [0] 4 | carB | carbamoyl‑phosphate synthase large subunit |
| * | * | ÷ | W3110S.gb | 35729 | 35764 | 36 | 6 [0] | [1] 8 | caiD | crotonobetainyl CoA hydratase |
| * | * | ÷ | W3110S.gb | 46438 | 46438 | 1 | 2 [0] | [0] 2 | yaaU | predicted transporter |
| * | * | ÷ | W3110S.gb | 53199 | 53207 | 9 | 9 [0] | [0] 5 | pdxA | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| * | * | ÷ | W3110S.gb | 59416 | 59429 | 14 | 19 [0] | [0] 4 | yabQ/rluA | hypothetical protein/pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) |
| * | * | ÷ | W3110S.gb | 73719 | 73749 | 31 | 4 [0] | [1] 2 | thiP | fused subunits of thiamin transporter and membrane components of ABC superfamily |
| * | * | ÷ | W3110S.gb | 73948 | 73960 | 13 | 4 [0] | [0] 8 | thiP | fused subunits of thiamin transporter and membrane components of ABC superfamily |
| * | * | ÷ | W3110S.gb | 75533 | 75536 | 4 | 3 [0] | [0] 2 | tbpA/sgrR | thiamin transporter subunit/DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 101261 | 101264 | 4 | 5 [1] | [0] 4 | murC | UDP‑N‑acetylmuramate:L‑alanine ligase |
| * | * | ÷ | W3110S.gb | 122314 | 122315 | 2 | 6 [0] | [0] 9 | pdhR | DNA‑binding transcriptional dual regulator |
| * | * | ÷ | W3110S.gb | 125943 | 125949 | 7 | 4 [0] | [0] 6 | aceF | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| * | * | ÷ | W3110S.gb | 157721 | 157733 | 13 | 4 [1] | [0] 5 | [folK]–[pcnB] | [folK],[pcnB] |
| * | * | ÷ | W3110S.gb | 164567 | 164623 | 57 | 2 [1] | [1] 7 | hrpB/mrcB | predicted ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | * | ÷ | W3110S.gb | 170806 | 170818 | 13 | 4 [0] | [0] 4 | fhuD | iron‑hydroxamate transporter subunit |
| * | * | ÷ | W3110S.gb | 171636 | 171674 | 39 | 2 [0] | [0] 10 | fhuB | fused subunits of iron‑hydroxamate transporter and membrane components of ABC superfamily transporter |
| * | * | ÷ | W3110S.gb | 200571 | 200577 | 7 | 10 [0] | [0] 6 | hlpA | periplasmic chaperone |
| * | * | ÷ | W3110S.gb | 203653 | 203657 | 5 | 2 [0] | [0] 14 | lpxB | tetraacyldisaccharide‑1‑P synthase |
| * | * | ÷ | W3110S.gb | 214519 | 214570 | 52 | 13 [0] | [0] 3 | yaeQ | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 215178 | 215218 | 41 | 2 [0] | [0] 7 | yaeJ | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 216292 | 216293 | 2 | 5 [0] | [0] 16 | yaeF | predicted lipoprotein |
| * | * | ÷ | W3110S.gb | 233421 | 233433 | 13 | 2 [0] | [0] 2 | mltD | predicted membrane‑bound lytic murein transglycosylase D |
| * | * | ÷ | W3110S.gb | 241046 | 241046 | 1 | 3 [0] | [0] 5 | fadE | acyl coenzyme A dehydrogenase |
| * | * | ÷ | W3110S.gb | 265687 | 265706 | 20 | 9 [1] | [1] 15 | yafY | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 267508 | 267508 | 1 | 2 [0] | [0] 6 | ykfA | predicted GTP‑binding protein |
| * | * | ÷ | W3110S.gb | 275589 | 275603 | 15 | 7 [0] | [0] 5 | mmuP | predicted S‑methylmethionine transporter |
| * | * | ÷ | W3110S.gb | 280350 | 280357 | 8 | 4 [0] | [0] 2 | yagA | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 281691 | 281724 | 34 | 8 [1] | [0] 6 | yagE | predicted lyase/synthase |
| * | * | ÷ | W3110S.gb | 283119 | 283124 | 6 | 2 [0] | [0] 2 | yagF | predicted dehydratase |
| * | * | ÷ | W3110S.gb | 285982 | 285990 | 9 | 3 [0] | [0] 8 | yagG | predicted sugar transporter |
| * | * | ÷ | W3110S.gb | 289473 | 289482 | 10 | 12 [0] | [0] 6 | argF | ornithine carbamoyltransferase 2, chain F |
| * | * | ÷ | W3110S.gb | 298869 | 298925 | 57 | 8 [1] | [0] 8 | yagR | predicted oxidoreductase with molybdenum‑binding domain |
| * | * | ÷ | W3110S.gb | 299112 | 299112 | 1 | 2 [0] | [0] 8 | yagR | predicted oxidoreductase with molybdenum‑binding domain |
| * | * | ÷ | W3110S.gb | 299333 | 299337 | 5 | 4 [0] | [0] 7 | yagR | predicted oxidoreductase with molybdenum‑binding domain |
| * | * | ÷ | W3110S.gb | 322350 | 322354 | 5 | 10 [0] | [0] 6 | ykgF | predicted amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain |
| * | * | ÷ | W3110S.gb | 348001 | 348006 | 6 | 7 [0] | [0] 5 | prpB | 2‑methylisocitrate lyase |
| * | * | ÷ | W3110S.gb | 352261 | 352268 | 8 | 2 [0] | [0] 6 | prpE | predicted propionyl‑CoA synthetase with ATPase domain |
| * | * | ÷ | W3110S.gb | 359476 | 359495 | 20 | 5 [0] | [1] 7 | cynX | predicted cyanate transporter |
| * | * | ÷ | W3110S.gb | 371217 | 371222 | 6 | 2 [0] | [1] 2 | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase |
| * | * | ÷ | W3110S.gb | 375267 | 375286 | 20 | 9 [0] | [1] 3 | mhpT | predicted 3‑hydroxyphenylpropionic transporter |
| * | * | ÷ | W3110S.gb | 386057 | 386082 | 26 | 3 [0] | [1] 10 | tauB | taurine transporter subunit |
| * | * | ÷ | W3110S.gb | 387913 | 387926 | 14 | 4 [0] | [0] 6 | tauD/hemB | taurine dioxygenase, 2‑oxoglutarate‑dependent/porphobilinogen synthase |
| * | * | ÷ | W3110S.gb | 388077 | 388080 | 4 | 4 [0] | [0] 5 | hemB | porphobilinogen synthase |
| * | * | ÷ | W3110S.gb | 404041 | 404044 | 4 | 7 [0] | [1] 10 | [yaiC] | [yaiC] |
| * | * | ÷ | W3110S.gb | 410293 | 410325 | 33 | 8 [1] | [0] 4 | mak/araJ | manno(fructo)kinase/predicted transporter |
| * | * | ÷ | W3110S.gb | 413320 | 413323 | 4 | 7 [0] | [0] 2 | sbcC | exonuclease, dsDNA, ATP‑dependent |
| * | * | ÷ | W3110S.gb | 419231 | 419232 | 2 | 4 [0] | [0] 5 | brnQ | predicted branched chain amino acid transporter |
| * | * | ÷ | W3110S.gb | 422758 | 422784 | 27 | 2 [0] | [0] 4 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 447449 | 447449 | 1 | 13 [0] | [0] 5 | cyoC | cytochrome o ubiquinol oxidase subunit III |
| * | * | ÷ | W3110S.gb | 459178 | 459194 | 17 | 12 [0] | [0] 2 | lon | DNA‑binding ATP‑dependent protease La |
| * | * | ÷ | W3110S.gb | 475787 | 475796 | 10 | 4 [1] | [0] 5 | ybaZ/ybaA | predicted methyltransferase/conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 491803 | 491806 | 4 | 5 [0] | [0] 7 | dnaX | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| * | * | ÷ | W3110S.gb | 511879 | 511901 | 23 | 14 [1] | [0] 5 | ybaT | predicted transporter |
| * | * | ÷ | W3110S.gb | 513502 | 513512 | 11 | 11 [0] | [0] 11 | cueR | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 513914 | 513940 | 27 | 8 [1] | [1] 8 | ybbJ | conserved inner membrane protein |
| * | * | ÷ | W3110S.gb | 515339 | 515349 | 11 | 8 [0] | [0] 2 | ybbL | predicted transporter subunit |
| * | * | ÷ | W3110S.gb | 517080 | 517097 | 18 | 4 [0] | [0] 6 | ybbN | predicted thioredoxin domain‑containing protein |
| * | * | ÷ | W3110S.gb | 519574 | 519594 | 21 | 15 [0] | [0] 10 | ybbA | predicted transporter subunit |
| * | * | ÷ | W3110S.gb | 520644 | 520649 | 6 | 16 [0] | [0] 4 | ybbP | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 523736 | 523767 | 32 | 4 [1] | [0] 6 | rhsD | rhsD element protein |
| * | * | ÷ | W3110S.gb | 524118 | 524128 | 11 | 3 [0] | [0] 8 | rhsD | rhsD element protein |
| * | * | ÷ | W3110S.gb | 537585 | 537591 | 7 | 4 [0] | [0] 4 | ybbW | predicted allantoin transporter |
| * | * | ÷ | W3110S.gb | 561271 | 561274 | 4 | 7 [0] | [0] 8 | sfmD | predicted outer membrane export usher protein |
| * | * | ÷ | W3110S.gb | 573863–575013 | 575999 | 987–2137 | 3 [1] | [0] 9 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 585808 | 585813 | 6 | 3 [1] | [0] 2 | envY | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 589126 | 589126 | 1 | 3 [0] | [0] 6 | nfrA | bacteriophage N4 receptor, outer membrane subunit |
| * | * | ÷ | W3110S.gb | 592915 | 592915 | 1 | 5 [0] | [0] 6 | cusS | sensory histidine kinase in two‑component regulatory system with CusR, senses copper ions |
| * | * | ÷ | W3110S.gb | 598784 | 598800 | 17 | 2 [0] | [0] 2 | cusA | copper/silver efflux system, membrane component |
| * | * | ÷ | W3110S.gb | 601788 | 601799 | 12 | 11 [0] | [0] 5 | pheP | phenylalanine transporter |
| * | * | ÷ | W3110S.gb | 621161 | 621255 | 95 | 5 [0] | [1] 7 | fepD | iron‑enterobactin transporter subunit |
| * | * | ÷ | W3110S.gb | 622079 | 622082 | 4 | 3 [0] | [0] 5 | ybdA | predicted transporter |
| * | * | ÷ | W3110S.gb | 626158 | 626162 | 5 | 8 [0] | [0] 8 | entE | 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex |
| * | * | ÷ | W3110S.gb | 632407 | 632428 | 22 | 10 [0] | [0] 2 | ybdH | predicted oxidoreductase |
| * | * | ÷ | W3110S.gb | 633451 | 633468 | 18 | 6 [0] | [1] 9 | ybdL | methionine aminotransferase, PLP‑dependent |
| * | * | ÷ | W3110S.gb | 638377 | 638380 | 4 | 8 [0] | [0] 4 | ahpC | alkyl hydroperoxide reductase, C22 subunit |
| * | * | ÷ | W3110S.gb | 648062 | 648095 | 34 | 3 [0] | [0] 9 | citF | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| * | * | ÷ | W3110S.gb | 649353 | 649353 | 1 | 2 [0] | [0] 10 | citE | citrate lyase, citryl‑ACP lyase (beta) subunit |
| * | * | ÷ | W3110S.gb | 659845 | 659850 | 6 | 9 [0] | [0] 2 | lipA | lipoate synthase |
| * | * | ÷ | W3110S.gb | 684365 | 684374 | 10 | 8 [0] | [0] 9 | rihA | ribonucleoside hydrolase 1 |
| * | * | ÷ | W3110S.gb | 723974 | 723984 | 11 | 3 [0] | [0] 6 | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE |
| * | * | ÷ | W3110S.gb | 725008 | 725009 | 2 | 6 [0] | [0] 2 | kdpC | potassium translocating ATPase, subunit C |
| * | * | ÷ | W3110S.gb | 726237 | 726261 | 25 | 2 [0] | [0] 2 | kdpB | potassium translocating ATPase, subunit B |
| * | * | ÷ | W3110S.gb | 727005 | 727014 | 10 | 7 [0] | [0] 6 | kdpB | potassium translocating ATPase, subunit B |
| * | * | ÷ | W3110S.gb | 729655 | 729655 | 1 | 3 [0] | [0] 3 | ybfA | hypothetical protein |
| * | * | ÷ | W3110S.gb | 743629 | 743640 | 12 | 2 [0] | [0] 3 | ybgI | conserved metal‑binding protein |
| * | * | ÷ | W3110S.gb | 746235 | 746237 | 3 | 9 [0] | [0] 2 | ybgL | predicted lactam utilization protein |
| * | * | ÷ | W3110S.gb | 749904 | 749929 | 26 | 8 [0] | [0] 10 | ybgP | predicted assembly protein |
| * | * | ÷ | W3110S.gb | 760579 | 760597 | 19 | 2 [1] | [0] 5 | sucA | 2‑oxoglutarate decarboxylase, thiamin‑requiring |
| * | * | ÷ | W3110S.gb | 762316 | 762318 | 3 | 9 [0] | [0] 4 | sucB | dihydrolipoyltranssuccinase |
| * | * | ÷ | W3110S.gb | 764492 | 764494 | 3 | 6 [0] | [0] 3 | sucC | succinyl‑CoA synthetase, beta subunit |
| * | * | ÷ | W3110S.gb | 766001 | 766007 | 7 | 5 [0] | [0] 11 | mngR | DNA‑binding transcriptional dual regulator, fatty‑acyl‑binding |
| * | * | ÷ | W3110S.gb | 777065 | 777074 | 10 | 2 [0] | [0] 2 | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| * | * | ÷ | W3110S.gb | 777333 | 777340 | 8 | 4 [0] | [0] 3 | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| * | * | ÷ | W3110S.gb | 783374 | 783395 | 22 | 3 [0] | [0] 3 | nadA | quinolinate synthase, subunit A |
| * | * | ÷ | W3110S.gb | 787161 | 787193 | 33 | 2 [1] | [1] 10 | aroG/gpmA | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible/phosphoglyceromutase 1 |
| * | * | ÷ | W3110S.gb | 790762 | 790804 | 43 | 11 [0] | [1] 2 | galT | galactose‑1‑phosphate uridylyltransferase |
| * | * | ÷ | W3110S.gb | 791666 | 791671 | 6 | 5 [0] | [0] 12 | galE | UDP‑galactose‑4‑epimerase |
| * | * | ÷ | W3110S.gb | 796090 | 796104 | 15 | 5 [0] | [1] 2 | modA | molybdate transporter subunit |
| * | * | ÷ | W3110S.gb | 797207 | 797234 | 28 | 8 [1] | [0] 3 | modC | molybdate transporter subunit |
| * | * | ÷ | W3110S.gb | 810874 | 810895 | 22 | 3 [0] | [0] 2 | bioF | 8‑amino‑7‑oxononanoate synthase |
| * | * | ÷ | W3110S.gb | 827103 | 827131 | 29 | 3 [1] | [1] 7 | ybhS | predicted transporter subunit |
| * | * | ÷ | W3110S.gb | 830662 | 830700 | 39 | 3 [1] | [0] 3 | ybiH | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 831485 | 831501 | 17 | 3 [0] | [0] 5 | rhlE | RNA helicase |
| * | * | ÷ | W3110S.gb | 833237 | 833256 | 20 | 10 [0] | [0] 4 | ybiA | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 833345 | 833359 | 15 | 4 [0] | [0] 5 | ybiA | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 836314 | 836399 | 86 | 7 [1] | [1] 7 | ybiB | predicted transferase/phosphorylase |
| * | * | ÷ | W3110S.gb | 840208 | 840210 | 3 | 2 [0] | [0] 7 | fiu | predicted iron outer membrane transporter |
| * | * | ÷ | W3110S.gb | 845580 | 845587 | 8 | 2 [1] | [0] 5 | ybiO | predicted mechanosensitive channel |
| * | * | ÷ | W3110S.gb | 850021 | 850027 | 7 | 8 [0] | [0] 6 | rhtA | threonine and homoserine efflux system |
| * | * | ÷ | W3110S.gb | 875156 | 875163 | 8 | 4 [0] | [0] 6 | yliE | conserved inner membrane protein |
| * | * | ÷ | W3110S.gb | 885792 | 885792 | 1 | 7 [0] | [0] 4 | ybjI | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 901777 | 901780 | 4 | 3 [0] | [0] 8 | artM | arginine transporter subunit |
| * | * | ÷ | W3110S.gb | 907959 | 907998 | 40 | 8 [1] | [0] 3 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | W3110S.gb | 915634 | 915662 | 29 | 2 [0] | [1] 15 | ybjE/aqpZ | predicted transporter/aquaporin |
| * | * | ÷ | W3110S.gb | 931938 | 931960 | 23 | 5 [1] | [0] 4 | trxB | thioredoxin reductase, FAD/NAD(P)‑binding |
| * | * | ÷ | W3110S.gb | 939406 | 939414 | 9 | 4 [0] | [0] 3 | ycaJ | recombination protein |
| * | * | ÷ | W3110S.gb | 941481 | 941484 | 4 | 5 [0] | [0] 4 | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | * | ÷ | W3110S.gb | 953770 | 953781 | 12 | 3 [1] | [0] 12 | pflB | pyruvate formate lyase I |
| * | * | ÷ | W3110S.gb | 962523 | 962524 | 2 | 7 [0] | [0] 4 | rpsA | 30S ribosomal subunit protein S1 |
| * | * | ÷ | W3110S.gb | 963847 | 963857 | 11 | 5 [0] | [0] 9 | rpsA | 30S ribosomal subunit protein S1 |
| * | * | ÷ | W3110S.gb | 968899 | 968925 | 27 | 3 [0] | [0] 8 | lpxK | lipid A 4'kinase |
| * | * | ÷ | W3110S.gb | 970973 | 970980 | 8 | 3 [0] | [0] 3 | ycaQ | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 975043 | 975064 | 22 | 8 [0] | [0] 6 | mukF | Involved in chromosome partioning, Ca2+ binding protein |
| * | * | ÷ | W3110S.gb | 978721 | 978725 | 5 | 8 [0] | [0] 3 | mukB | fused chromosome partitioning proteins |
| * | * | ÷ | W3110S.gb | 979131 | 979133 | 3 | 3 [0] | [0] 16 | mukB | fused chromosome partitioning proteins |
| * | * | ÷ | W3110S.gb | 979401 | 979401 | 1 | 6 [0] | [0] 7 | mukB | fused chromosome partitioning proteins |
| * | * | ÷ | W3110S.gb | 984800 | 984811 | 12 | 5 [0] | [0] 2 | ycbL/aspC | predicted metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent |
| * | * | ÷ | W3110S.gb | 1006615 | 1006635 | 21 | 21 [1] | [0] 7 | ycbW | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1009575 | 1009638 | 64 | 11 [1] | [0] 2 | ycbY | predicted methyltransferase |
| * | * | ÷ | W3110S.gb | 1011997 | 1012003 | 7 | 2 [0] | [0] 5 | uup | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| * | * | ÷ | W3110S.gb | 1021269 | 1021280 | 12 | 8 [0] | [1] 2 | sulA | SOS cell division inhibitor |
| * | * | ÷ | W3110S.gb | 1022560 | 1022560 | 1 | 5 [0] | [0] 9 | yccS | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 1054989 | 1055004 | 16 | 5 [1] | [0] 2 | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| * | * | ÷ | W3110S.gb | 1058046 | 1058054 | 9 | 3 [1] | [1] 14 | torR | DNA‑binding response regulator in two‑component regulatory system with TorS |
| * | * | ÷ | W3110S.gb | 1072349 | 1072358 | 10 | 2 [0] | [0] 6 | ycdK | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1076706 | 1076708 | 3 | 19 [0] | [0] 2 | putA | fused DNA‑binding transcriptional regulator, proline dehydrogenase, and pyrroline‑5‑carboxylate dehydrogenase |
| * | * | ÷ | W3110S.gb | 1076779 | 1076807 | 29 | 3 [1] | [0] 8 | putA | fused DNA‑binding transcriptional regulator, proline dehydrogenase, and pyrroline‑5‑carboxylate dehydrogenase |
| * | * | ÷ | W3110S.gb | 1079118 | 1079125 | 8 | 4 [0] | [0] 3 | putA | fused DNA‑binding transcriptional regulator, proline dehydrogenase, and pyrroline‑5‑carboxylate dehydrogenase |
| * | * | ÷ | W3110S.gb | 1081304 | 1081385 | 82 | 5 [0] | [0] 2 | putP/ycdN | proline:sodium symporter/ECK1007:JW5141:b1016; hypothetical protein, N‑ter fragment |
| * | * | ÷ | W3110S.gb | 1084101 | 1084104 | 4 | 13 [0] | [0] 3 | ycdB | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1097551 | 1097561 | 11 | 3 [0] | [0] 5 | ycdU/serX | predicted inner membrane protein/tRNA‑Ser |
| * | * | ÷ | W3110S.gb | 1110590 | 1110625 | 36 | 2 [0] | [0] 9 | mdoC/mdoG | membrane protein required for modification of periplasmic glucan/glucan biosynthesis protein, periplasmic |
| * | * | ÷ | W3110S.gb | 1117896 | 1117905 | 10 | 6 [0] | [0] 3 | lpxL | lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| * | * | ÷ | W3110S.gb | 1119601 | 1119612 | 12 | 6 [1] | [0] 10 | yceI | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1120270 | 1120297 | 28 | 4 [0] | [1] 11 | yceJ | predicted cytochrome b561 |
| * | * | ÷ | W3110S.gb | 1122063 | 1122068 | 6 | 6 [1] | [0] 9 | solA | N‑methyltryptophan oxidase, FAD‑binding |
| * | * | ÷ | W3110S.gb | 1124683 | 1124698 | 16 | 7 [0] | [1] 3 | yceB | predicted lipoprotein |
| * | * | ÷ | W3110S.gb | 1125235 | 1125256 | 22 | 2 [0] | [0] 2 | grxB | glutaredoxin 2 |
| * | * | ÷ | W3110S.gb | 1128480 | 1128488 | 9 | 2 [0] | [0] 12 | mviM | predicted oxidoreductase, NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | W3110S.gb | 1136961 | 1136990 | 30 | 3 [0] | [0] 9 | flgG | flagellar component of cell‑distal portion of basal‑body rod |
| * | * | ÷ | W3110S.gb | 1143798 | 1143803 | 6 | 8 [0] | [0] 9 | rne | fused ribonucleaseE endoribonuclease and scaffold for formation of degradosome |
| * | * | ÷ | W3110S.gb | 1150160 | 1150168 | 9 | 8 [0] | [0] 5 | plsX | fatty acid/phospholipid synthesis protein |
| * | * | ÷ | W3110S.gb | 1155135 | 1155138 | 4 | 7 [0] | [0] 5 | pabC | 4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| * | * | ÷ | W3110S.gb | 1164204 | 1164234 | 31 | 3 [0] | [1] 4 | [ycfM] | [ycfM] |
| * | * | ÷ | W3110S.gb | 1170265 | 1170288 | 24 | 4 [0] | [1] 2 | ycfQ | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 1172896 | 1172901 | 6 | 5 [0] | [0] 5 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | W3110S.gb | 1173162 | 1173208 | 47 | 3 [0] | [0] 6 | mfd | transcription‑repair coupling factor |
| * | * | ÷ | W3110S.gb | 1178614 | 1178626 | 13 | 5 [0] | [1] 4 | lolD | outer membrane‑specific lipoprotein transporter subunit |
| * | * | ÷ | W3110S.gb | 1187956 | 1187973 | 18 | 6 [0] | [1] 13 | pepT | peptidase T |
| * | * | ÷ | W3110S.gb | 1189488 | 1189499 | 12 | 6 [1] | [0] 4 | ycfD | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1193798 | 1193808 | 11 | 9 [0] | [0] 2 | hflD | predicted lysogenization regulator |
| * | * | ÷ | W3110S.gb | 1196097 | 1196147 | 51 | 2 [0] | [0] 3 | ymfC | 23S rRNA pseudouridine synthase |
| * | * | ÷ | W3110S.gb | 1198743 | 1198751 | 9 | 17 [0] | [1] 5 | ymfD | predicted SAM‑dependent methyltransferase |
| * | * | ÷ | W3110S.gb | 1225385 | 1225392 | 8 | 2 [0] | [0] 10 | ycgI | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1229907 | 1229961 | 55 | 3 [0] | [0] 2 | ycgM | predicted isomerase/hydrolase |
| * | * | ÷ | W3110S.gb | 1234431 | 1234433 | 3 | 10 [0] | [0] 7 | dsbB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| * | * | ÷ | W3110S.gb | 1250338 | 1250353 | 16 | 16 [0] | [0] 3 | dhaH | fused predicted dihydroxyacetone‑specific PTS enzyme HPr component and EI component |
| * | * | ÷ | W3110S.gb | 1251359 | 1251410 | 52 | 14 [0] | [0] 6 | dhaK | dihydroxyacetone kinase, N‑terminal domain |
| * | * | ÷ | W3110S.gb | 1252267 | 1252274 | 8 | 3 [0] | [0] 7 | dhaK | dihydroxyacetone kinase, N‑terminal domain |
| * | * | ÷ | W3110S.gb | 1258042 | 1258062 | 21 | 2 [0] | [0] 5 | ycgV/ychF | predicted adhesin/predicted GTP‑binding protein |
| * | * | ÷ | W3110S.gb | 1272972 | 1272985 | 14 | 8 [1] | [0] 5 | chaA | calcium/sodium:proton antiporter |
| * | * | ÷ | W3110S.gb | 1274358 | 1274402 | 45 | 4 [0] | [1] 4 | chaC | regulatory protein for cation transport |
| * | * | ÷ | W3110S.gb | 1277129 | 1277143 | 15 | 4 [0] | [0] 3 | narL | DNA‑binding response regulator in two‑component regulatory system with NarX (or NarQ) |
| * | * | ÷ | W3110S.gb | 1284291 | 1284298 | 8 | 7 [0] | [0] 3 | narG | nitrate reductase 1, alpha subunit |
| * | * | ÷ | W3110S.gb | 1293972 | 1294049 | 78 | 16 [0] | [0] 4 | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| * | * | ÷ | W3110S.gb | 1312327 | 1312345 | 19 | 6 [0] | [0] 2 | yciI | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1312986 | 1313067 | 82 | 6 [1] | [0] 3 | tonB | membrane spanning protein in TonB‑ExbB‑ExbD complex |
| * | * | ÷ | W3110S.gb | 1322460 | 1322473 | 14 | 8 [0] | [0] 3 | trpD | fused glutamine amidotransferase (component II) of anthranilate synthase and anthranilate phosphoribosyl transferase |
| * | * | ÷ | W3110S.gb | 1324967 | 1324969 | 3 | 6 [0] | [0] 3 | yciV | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1328329 | 1328337 | 9 | 5 [0] | [0] 4 | yciQ | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 1338214 | 1338219 | 6 | 13 [0] | [0] 8 | acnA | aconitate hydratase 1 |
| * | * | ÷ | W3110S.gb | 1341615 | 1341631 | 17 | 8 [0] | [0] 6 | pgpB | phosphatidylglycerophosphate phosphatase B |
| * | * | ÷ | W3110S.gb | 1341859 | 1341865 | 7 | 14 [0] | [0] 2 | pgpB/yciS | phosphatidylglycerophosphate phosphatase B/conserved inner membrane protein |
| * | * | ÷ | W3110S.gb | 1351363 | 1351372 | 10 | 5 [0] | [0] 3 | yciW | predicted oxidoreductase |
| * | * | ÷ | W3110S.gb | 1363109 | 1363111 | 3 | 5 [0] | [0] 4 | puuD | gamma‑Glu‑GABA hydrolase |
| * | * | ÷ | W3110S.gb | 1367137 | 1367167 | 31 | 15 [0] | [0] 2 | puuB | gamma‑Glu‑putrescine oxidase, FAD/NAD(P)‑binding |
| * | * | ÷ | W3110S.gb | 1370289 | 1370291 | 3 | 8 [0] | [0] 10 | pspA | regulatory protein for phage‑shock‑protein operon |
| * | * | ÷ | W3110S.gb | 1371196 | 1371233 | 38 | 6 [0] | [0] 12 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | W3110S.gb | 1371300 | 1371302 | 3 | 11 [0] | [0] 9 | pspD | peripheral inner membrane phage‑shock protein |
| * | * | ÷ | W3110S.gb | 1374693 | 1374716 | 24 | 11 [0] | [0] 2 | ycjN | predicted sugar transporter subunit |
| * | * | ÷ | W3110S.gb | 1410206 | 1410211 | 6 | 9 [0] | [0] 5 | ydaN | predicted Zn(II) transporter |
| * | * | ÷ | W3110S.gb | 1411573 | 1411585 | 13 | 2 [0] | [0] 10 | dbpA | ATP‑dependent RNA helicase specific for 23S rRNA |
| * | * | ÷ | W3110S.gb | 1416398 | 1416405 | 8 | 15 [0] | [0] 5 | recT | recombination and repair protein |
| * | * | ÷ | W3110S.gb | 1420969 | 1420986 | 18 | 5 [0] | [0] 8 | ydaF | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1421256 | 1421332 | 77 | 4 [1] | [1] 17 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 1441712 | 1441712 | 1 | 11 [0] | [0] 2 | ydbK | fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase |
| * | * | ÷ | W3110S.gb | 1457618 | 1457632 | 15 | 7 [1] | [0] 10 | [paaC] | [paaC] |
| * | * | ÷ | W3110S.gb | 1463113 | 1463114 | 2 | 3 [0] | [0] 12 | paaJ | predicted beta‑ketoadipyl CoA thiolase |
| * | * | ÷ | W3110S.gb | 1469555 | 1469556 | 2 | 2 [0] | [0] 3 | ydbA ydbA |
ECK1398:JW5802:b1401; predicted outer membrane protein, N‑ter fragment ECK1398:JW5802+JW1402:b4492; predicted outer membrane protein |
| * | * | ÷ | W3110S.gb | 1480827 | 1480830 | 4 | 5 [0] | [1] 7 | ynbB | predicted CDP‑diglyceride synthase |
| * | * | ÷ | W3110S.gb | 1486211 | 1486214 | 4 | 14 [0] | [0] 13 | hrpA | ATP‑dependent helicase |
| * | * | ÷ | W3110S.gb | 1502069 | 1502069 | 1 | 9 [0] | [0] 8 | ydcK | hypothetical protein |
| * | * | ÷ | W3110S.gb | 1503832 | 1503859 | 28 | 4 [1] | [1] 3 | tehB | predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| * | * | ÷ | W3110S.gb | 1505885 | 1505887 | 3 | 4 [0] | [0] 7 | ydcM | predicted transposase |
| * | * | ÷ | W3110S.gb | 1509988 | 1510003 | 16 | 8 [1] | [0] 3 | ydcP | predicted peptidase |
| * | * | ÷ | W3110S.gb | 1516964 | 1516973 | 10 | 2 [0] | [0] 11 | ydcV | predicted spermidine/putrescine transporter subunit |
| * | * | ÷ | W3110S.gb | 1541274 | 1541274 | 1 | 9 [0] | [0] 5 | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| * | * | ÷ | W3110S.gb | 1569306 | 1569311 | 6 | 5 [0] | [1] 21 | yddW | predicted liprotein |
| * | * | ÷ | W3110S.gb | 1570282 | 1570289 | 8 | 9 [0] | [0] 2 | yddW | predicted liprotein |
| * | * | ÷ | W3110S.gb | 1588013 | 1588016 | 4 | 5 [1] | [0] 12 | ydeP | predicted oxidoreductase |
| * | * | ÷ | W3110S.gb | 1608179 | 1608182 | 4 | 4 [0] | [0] 8 | lsrF | predicted aldolase |
| * | * | ÷ | W3110S.gb | 1614179 | 1614218 | 40 | 13 [0] | [1] 2 | yneH | predicted glutaminase |
| * | * | ÷ | W3110S.gb | 1622789 | 1622792 | 4 | 6 [0] | [0] 2 | eamA | cysteine and O‑acetyl‑L‑serine efflux system |
| * | * | ÷ | W3110S.gb | 1641703 | 1641710 | 8 | 7 [1] | [0] 13 | ydfQ | predicted lysozyme |
| * | * | ÷ | W3110S.gb | 1642363 | 1642367 | 5 | 2 [0] | [0] 9 | essQ/cspB | predicted S lysis protein/cold shock protein |
| * | * | ÷ | W3110S.gb | 1646322 | 1646335 | 14 | 3 [0] | [0] 7 | ydfU/rem | hypothetical protein/hypothetical protein |
| * | * | ÷ | W3110S.gb | 1668334 | 1668337 | 4 | 13 [0] | [0] 3 | ynfK | predicted dethiobiotin synthetase |
| * | * | ÷ | W3110S.gb | 1671246 | 1671257 | 12 | 3 [0] | [0] 12 | ynfL | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 1676862 | 1676877 | 16 | 14 [0] | [0] 7 | pntB | pyridine nucleotide transhydrogenase, beta subunit |
| * | * | ÷ | W3110S.gb | 1683447 | 1683453 | 7 | 7 [1] | [0] 11 | ydgC | conserved inner membrane protein associated with alginate biosynthesis |
| * | * | ÷ | W3110S.gb | 1699085 | 1699108 | 24 | 8 [0] | [0] 7 | hdhA | 7alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| * | * | ÷ | W3110S.gb | 1704261 | 1704263 | 3 | 12 [0] | [0] 5 | add | adenosine deaminase |
| * | * | ÷ | W3110S.gb | 1705936 | 1705954 | 19 | 5 [1] | [0] 14 | ydgJ | predicted oxidoreductase |
| * | * | ÷ | W3110S.gb | 1707702 | 1707702 | 1 | 3 [0] | [0] 11 | rsxA | predicted inner membrane subunit |
| * | * | ÷ | W3110S.gb | 1708759 | 1708783 | 25 | 6 [0] | [1] 8 | rsxC | fused predicted 4Fe‑4S ferredoxin‑type protein |
| * | * | ÷ | W3110S.gb | 1709987 | 1709995 | 9 | 2 [0] | [0] 3 | rsxC | fused predicted 4Fe‑4S ferredoxin‑type protein |
| * | * | ÷ | W3110S.gb | 1710115 | 1710132 | 18 | 3 [0] | [0] 5 | rsxC | fused predicted 4Fe‑4S ferredoxin‑type protein |
| * | * | ÷ | W3110S.gb | 1722078 | 1722087 | 10 | 15 [1] | [0] 5 | slyB/slyA | outer membrane lipoprotein/DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 1732250 | 1732259 | 10 | 2 [0] | [0] 7 | lhr | predicted ATP‑dependent helicase |
| * | * | ÷ | W3110S.gb | 1733164 | 1733191 | 28 | 4 [0] | [0] 6 | lhr | predicted ATP‑dependent helicase |
| * | * | ÷ | W3110S.gb | 1735276 | 1735287 | 12 | 2 [0] | [0] 4 | lhr | predicted ATP‑dependent helicase |
| * | * | ÷ | W3110S.gb | 1754069 | 1754071 | 3 | 13 [0] | [1] 3 | ydhV | predicted oxidoreductase |
| * | * | ÷ | W3110S.gb | 1762731 | 1762735 | 5 | 12 [0] | [0] 6 | sufD | component of SufBCD complex |
| * | * | ÷ | W3110S.gb | 1775113 | 1775118 | 6 | 7 [0] | [0] 14 | ydiN | predicted transporter |
| * | * | ÷ | W3110S.gb | 1783285 | 1783289 | 5 | 8 [0] | [0] 7 | ydiS | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| * | * | ÷ | W3110S.gb | 1783404 | 1783413 | 10 | 5 [0] | [0] 12 | ydiS | predicted oxidoreductase, FAD/NAD(P)‑binding domain |
| * | * | ÷ | W3110S.gb | 1786628 | 1786635 | 8 | 8 [0] | [0] 3 | pps | phosphoenolpyruvate synthase |
| * | * | ÷ | W3110S.gb | 1817834 | 1817849 | 16 | 4 [0] | [0] 2 | [katE] | [katE] |
| * | * | ÷ | W3110S.gb | 1822239 | 1822269 | 31 | 2 [0] | [0] 4 | chbC | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
| * | * | ÷ | W3110S.gb | 1823061 | 1823072 | 12 | 2 [0] | [0] 2 | chbB | N,N'‑diacetylchitobiose‑specific enzyme IIB component of PTS |
| * | * | ÷ | W3110S.gb | 1831395 | 1831395 | 1 | 11 [0] | [0] 8 | astD | succinylglutamic semialdehyde dehydrogenase |
| * | * | ÷ | W3110S.gb | 1870957 | 1871004 | 48 | 5 [1] | [1] 12 | yeaH | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 1876756 | 1876763 | 8 | 2 [1] | [0] 2 | yeaM | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 1906488 | 1906532 | 45 | 10 [1] | [0] 4 | [yobD] | [yobD] |
| * | * | ÷ | W3110S.gb | 1926107 | 1926116 | 10 | 2 [0] | [0] 2 | yebZ | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 1928957 | 1928966 | 10 | 3 [0] | [0] 7 | ptrB | protease II |
| * | * | ÷ | W3110S.gb | 1933691 | 1933697 | 7 | 5 [1] | [0] 2 | purT | phosphoribosylglycinamide formyltransferase 2 |
| * | * | ÷ | W3110S.gb | 1941728 | 1941737 | 10 | 3 [0] | [0] 10 | lpxM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| * | * | ÷ | W3110S.gb | 1942063 | 1942095 | 33 | 3 [1] | [1] 3 | yebA | predicted peptidase |
| * | * | ÷ | W3110S.gb | 1966434 | 1966438 | 5 | 9 [0] | [0] 12 | flhA | predicted flagellar export pore protein |
| * | * | ÷ | W3110S.gb | 1971752 | 1971756 | 5 | 2 [0] | [0] 7 | tap | methyl‑accepting protein IV |
| * | * | ÷ | W3110S.gb | 1973397 | 1973409 | 13 | 15 [1] | [0] 2 | tar | methyl‑accepting chemotaxis protein II |
| * | * | ÷ | W3110S.gb | 1975369 | 1975409 | 41 | 10 [0] | [1] 3 | cheA | fused chemotactic sensory histidine kinase (soluble) in two‑component regulatory system with CheB and CheY |
| * | * | ÷ | W3110S.gb | 1993334 | 1993367 | 34 | 6 [0] | [1] 5 | yecA | conserved metal‑binding protein |
| * | * | ÷ | W3110S.gb | 1998125 | 1998126 | 2 | 8 [0] | [0] 5 | yecF | hypothetical protein |
| * | * | ÷ | W3110S.gb | 2005809 | 2005819 | 11 | 8 [1] | [0] 6 | fliC/fliD | flagellar filament structural protein/flagellar filament capping protein |
| * | * | ÷ | W3110S.gb | 2013150 | 2013154 | 5 | 6 [0] | [0] 6 | yedL | predicted acyltransferase |
| * | * | ÷ | W3110S.gb | 2015652 | 2015660 | 9 | 4 [0] | [0] 2 | fliF | flagellar basal‑body MS‑ring and collar protein |
| * | * | ÷ | W3110S.gb | 2019095 | 2019096 | 2 | 2 [0] | [0] 9 | fliI | flagellum‑specific ATP synthase |
| * | * | ÷ | W3110S.gb | 2033384 | 2033385 | 2 | 8 [0] | [0] 6 | dcm | DNA cytosine methylase |
| * | * | ÷ | W3110S.gb | 2035900 | 2035911 | 12 | 3 [0] | [0] 3 | yedR/yedS | predicted inner membrane protein/ECK1962:JW5319:b1964; hypothetical protein, N‑ter fragment |
| * | * | ÷ | W3110S.gb | 2041741 | 2041820 | 80 | 5 [0] | [0] 8 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2042419 | 2042421 | 3 | 4 [0] | [0] 15 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2054999 | 2055003 | 5 | 14 [1] | [0] 3 | yeeL yeeL |
ECK1975:JW1961+JW5325:b4497; hypothetical protein ECK1975:JW1961:b1980; hypothetical protein, N‑ter fragment |
| * | * | ÷ | W3110S.gb | 2056070 | 2056072 | 3 | 18 [0] | [0] 10 | shiA | shikimate transporter |
| * | * | ÷ | W3110S.gb | 2073813 | 2073832 | 20 | 9 [0] | [0] 4 | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| * | * | ÷ | W3110S.gb | 2089279 | 2089282 | 4 | 5 [0] | [0] 4 | yeeF/yeeY | predicted amino‑acid transporter/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2106231 | 2106236 | 6 | 11 [0] | [1] 3 | wbbK | lipopolysaccharide biosynthesis protein |
| * | * | ÷ | W3110S.gb | 2120669 | 2120687 | 19 | 3 [0] | [0] 3 | wcaK/wzxC | predicted pyruvyl transferase/colanic acid exporter |
| * | * | ÷ | W3110S.gb | 2120758 | 2120780 | 23 | 3 [0] | [0] 6 | wcaK/wzxC | predicted pyruvyl transferase/colanic acid exporter |
| * | * | ÷ | W3110S.gb | 2151726 | 2151726 | 1 | 4 [0] | [0] 4 | yegI | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2151804 | 2151809 | 6 | 10 [0] | [0] 7 | yegI | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2160597 | 2160615 | 19 | 8 [0] | [0] 4 | mdtC | multidrug efflux system, subunit C |
| * | * | ÷ | W3110S.gb | 2173675 | 2173688 | 14 | 2 [0] | [0] 2 | gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| * | * | ÷ | W3110S.gb | 2193317 | 2193328 | 12 | 4 [0] | [0] 2 | yehB | predicted outer membrane protein |
| * | * | ÷ | W3110S.gb | 2202987 | 2203011 | 25 | 13 [1] | [0] 11 | molR molR |
DNA‑binding transcriptional regulator; ECK2108:JW2102+JW5915+JW5916:b4499 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2108:JW5916:b2117 |
| * | * | ÷ | W3110S.gb | 2223313 | 2223315 | 3 | 12 [0] | [0] 10 | bglX | beta‑D‑glucoside glucohydrolase, periplasmic |
| * | * | ÷ | W3110S.gb | 2232504 | 2232525 | 22 | 3 [0] | [0] 8 | yohH/dusC | conserved hypothetical protein/tRNA‑dihydrouridine synthase C |
| * | * | ÷ | W3110S.gb | 2252447 | 2252447 | 1 | 6 [0] | [0] 8 | yeiE | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2271575 | 2271591 | 17 | 4 [0] | [0] 5 | yeiR | hypothetical protein |
| * | * | ÷ | W3110S.gb | 2278944 | 2278945 | 2 | 10 [1] | [0] 4 | yejE | predicted oligopeptide transporter subunit |
| * | * | ÷ | W3110S.gb | 2296383 | 2296402 | 20 | 6 [0] | [0] 4 | ccmF | heme lyase, CcmF subunit |
| * | * | ÷ | W3110S.gb | 2307913–2308115 | 2308131 | 17–219 | 3 [0] | [1] 3 | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| * | * | ÷ | W3110S.gb | 2326772 | 2326786 | 15 | 5 [0] | [0] 2 | atoC | fused response regulator of ato opeon, in two‑component system with AtoS |
| * | * | ÷ | W3110S.gb | 2359375 | 2359375 | 1 | 4 [0] | [0] 11 | glpB | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
| * | * | ÷ | W3110S.gb | 2366443 | 2366454 | 12 | 9 [1] | [1] 16 | yfaX | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2367415 | 2367431 | 17 | 5 [0] | [1] 5 | yfaY | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2381928 | 2381981 | 54 | 2 [0] | [1] 6 | yfbB | predicted peptidase |
| * | * | ÷ | W3110S.gb | 2405986 | 2406011 | 26 | 6 [1] | [0] 3 | nuoF | NADH:ubiquinone oxidoreductase, chain F |
| * | * | ÷ | W3110S.gb | 2424340 | 2424342 | 3 | 4 [0] | [0] 2 | yfcD | predicted NUDIX hydrolase |
| * | * | ÷ | W3110S.gb | 2432009 | 2432024 | 16 | 10 [0] | [1] 2 | hisJ | histidine/lysine/arginine/ornithine transporter subunit |
| * | * | ÷ | W3110S.gb | 2437594 | 2437620 | 27 | 3 [1] | [0] 13 | folC | bifunctional folylpolyglutamate synthase and dihydrofolate synthase |
| * | * | ÷ | W3110S.gb | 2443703 | 2443711 | 9 | 11 [0] | [0] 5 | flk | predicted flagella assembly protein |
| * | * | ÷ | W3110S.gb | 2446614 | 2446638 | 25 | 2 [1] | [0] 8 | fabB | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| * | * | ÷ | W3110S.gb | 2477446 | 2477453 | 8 | 3 [0] | [0] 11 | yfdL | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2515278 | 2515288 | 11 | 7 [1] | [1] 3 | yfeO | predicted ion channel protein |
| * | * | ÷ | W3110S.gb | 2516573 | 2516576 | 4 | 9 [0] | [0] 2 | ypeC | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2521093 | 2521102 | 10 | 5 [0] | [0] 17 | yfeA | predicted diguanylate cyclase |
| * | * | ÷ | W3110S.gb | 2521477 | 2521486 | 10 | 6 [0] | [0] 2 | yfeA | predicted diguanylate cyclase |
| * | * | ÷ | W3110S.gb | 2536223 | 2536225 | 3 | 5 [0] | [0] 2 | zipA | cell division protein involved in Z ring assembly |
| * | * | ÷ | W3110S.gb | 2544250 | 2544263 | 14 | 5 [0] | [0] 6 | cysM | cysteine synthase B |
| * | * | ÷ | W3110S.gb | 2545611 | 2545641 | 31 | 8 [0] | [0] 2 | cysA | sulfate/thiosulfate transporter subunit |
| * | * | ÷ | W3110S.gb | 2546585 | 2546587 | 3 | 9 [0] | [0] 14 | cysW | sulfate/thiosulfate transporter subunit |
| * | * | ÷ | W3110S.gb | 2552656 | 2552661 | 6 | 13 [0] | [0] 4 | murP | fused predicted enzyme IIBC components of PTS |
| * | * | ÷ | W3110S.gb | 2558956 | 2558970 | 15 | 7 [1] | [1] 5 | hemF | coproporphyrinogen III oxidase |
| * | * | ÷ | W3110S.gb | 2562490 | 2562522 | 33 | 12 [1] | [0] 12 | eutC | ethanolamine ammonia‑lyase, small subunit (light chain) |
| * | * | ÷ | W3110S.gb | 2564128 | 2564144 | 17 | 23 [0] | [0] 6 | [eutA] | [eutA] |
| * | * | ÷ | W3110S.gb | 2569107 | 2569143 | 37 | 16 [0] | [0] 2 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 2590463 | 2590466 | 4 | 6 [1] | [0] 4 | dapE | N‑succinyl‑diaminopimelate deacylase |
| * | * | ÷ | W3110S.gb | 2591653 | 2591659 | 7 | 2 [0] | [0] 2 | ypfN/ypfH | hypothetical protein/predicted hydrolase |
| * | * | ÷ | W3110S.gb | 2606497 | 2606516 | 20 | 3 [0] | [0] 3 | hyfF | hydrogenase 4, membrane subunit |
| * | * | ÷ | W3110S.gb | 2617256 | 2617268 | 13 | 16 [0] | [0] 11 | hda | ATPase regulatory factor involved in DnaA inactivation |
| * | * | ÷ | W3110S.gb | 2619826 | 2619831 | 6 | 5 [0] | [0] 2 | upp/purM | uracil phosphoribosyltransferase/phosphoribosylaminoimidazole synthetase |
| * | * | ÷ | W3110S.gb | 2640816 | 2640913 | 98 | 4 [1] | [1] 6 | yfgA | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2655109 | 2655119 | 11 | 16 [0] | [0] 8 | pepB/yfhJ | aminopeptidase B/conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2657466 | 2657474 | 9 | 6 [0] | [0] 2 | hscA | DnaK‑like molecular chaperone specific for IscU |
| * | * | ÷ | W3110S.gb | 2665802 | 2665805 | 4 | 3 [0] | [1] 4 | hcaT | predicted 3‑phenylpropionic transporter |
| * | * | ÷ | W3110S.gb | 2678234 | 2678244 | 11 | 6 [0] | [0] 3 | yphG | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2679322 | 2679325 | 4 | 9 [0] | [0] 5 | yphG | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2700179 | 2700190 | 12 | 11 [0] | [0] 16 | pdxJ | pyridoxine 5'‑phosphate synthase |
| * | * | ÷ | W3110S.gb | 2709808 | 2709830 | 23 | 6 [1] | [0] 2 | nadB | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| * | * | ÷ | W3110S.gb | 2739947 | 2739950 | 4 | 2 [0] | [0] 6 | aroF/yfiL | 3‑deoxy‑D‑arabinoheptulosonate‑7‑phosphate synthase, tyrosine‑repressible/hypothetical protein |
| * | * | ÷ | W3110S.gb | 2751827 | 2751837 | 11 | 3 [1] | [1] 2 | recN | recombination and repair protein |
| * | * | ÷ | W3110S.gb | 2768694 | 2768722 | 29 | 6 [1] | [0] 7 | yfjR | predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2776519 | 2776521 | 3 | 4 [0] | [0] 5 | ypjF/ypjA | toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| * | * | ÷ | W3110S.gb | 2777827 | 2777853 | 27 | 8 [0] | [0] 17 | ypjA | adhesin‑like autotransporter |
| * | * | ÷ | W3110S.gb | 2778711 | 2778712 | 2 | 8 [0] | [0] 3 | ypjA | adhesin‑like autotransporter |
| * | * | ÷ | W3110S.gb | 2790474 | 2790545 | 72 | 2 [1] | [0] 12 | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| * | * | ÷ | W3110S.gb | 2827389 | 2827398 | 10 | 3 [0] | [1] 2 | gutM | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 2829646 | 2829649 | 4 | 2 [0] | [0] 7 | norR | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 2845997 | 2846005 | 9 | 5 [0] | [0] 5 | hycD | hydrogenase 3, membrane subunit |
| * | * | ÷ | W3110S.gb | 2861763 | 2861769 | 7 | 4 [0] | [0] 3 | ygbK | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2862979 | 2862985 | 7 | 16 [0] | [0] 2 | ygbM | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 2894053 | 2894105 | 53 | 10 [0] | [1] 3 | ygcQ | predicted flavoprotein |
| * | * | ÷ | W3110S.gb | 2911342 | 2911343 | 2 | 2 [0] | [0] 4 | relA | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| * | * | ÷ | W3110S.gb | 2915732 | 2915732 | 1 | 14 [0] | [0] 3 | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| * | * | ÷ | W3110S.gb | 2957007 | 2957007 | 1 | 6 [0] | [0] 6 | ptr | protease III |
| * | * | ÷ | W3110S.gb | 3091215 | 3091224 | 10 | 2 [0] | [0] 14 | gshB | glutathione synthetase |
| * | * | ÷ | W3110S.gb | 3110854 | 3110857 | 4 | 3 [0] | [0] 18 | yghF | predicted secretion pathway protein, C‑type protein |
| * | * | ÷ | W3110S.gb | 3124905 | 3124927 | 23 | 2 [1] | [0] 9 | glcE | glycolate oxidase FAD binding subunit |
| * | * | ÷ | W3110S.gb | 3208943 | 3208961 | 19 | 6 [1] | [0] 3 | ygjD | predicted peptidase |
| * | * | ÷ | W3110S.gb | 3238270 | 3238334 | 65 | 4 [1] | [1] 2 | alx/sstT | predicted inner membrane protein, part of terminus/sodium:serine/threonine symporter |
| * | * | ÷ | W3110S.gb | 3261134–3262327 | 3262328 | 2–1195 | 14 [0] | [0] 3 | insH–[tdcD] | insH,[tdcD] |
| * | * | ÷ | W3110S.gb | 3301394 | 3301446 | 53 | 4 [1] | [1] 7 | yhbU | predicted peptidase, collagenase‑like |
| * | * | ÷ | W3110S.gb | 3309111 | 3309147 | 37 | 7 [0] | [1] 9 | pnp | polynucleotide phosphorylase/polyadenylase |
| * | * | ÷ | W3110S.gb | 3315495 | 3315498 | 4 | 4 [0] | [0] 9 | infB | fused protein chain initiation factor 2, IF2 |
| * | * | ÷ | W3110S.gb | 3327327 | 3327339 | 13 | 10 [1] | [0] 2 | rrmJ | 23S rRNA methyltransferase |
| * | * | ÷ | W3110S.gb | 3336947 | 3336951 | 5 | 12 [0] | [0] 6 | yrbB | hypothetical protein |
| * | * | ÷ | W3110S.gb | 3376811 | 3376818 | 8 | 4 [0] | [0] 7 | sspA | stringent starvation protein A |
| * | * | ÷ | W3110S.gb | 3417041 | 3417041 | 1 | 11 [0] | [0] 3 | acrF | multidrug efflux system protein |
| * | * | ÷ | W3110S.gb | 3439126 | 3439153 | 28 | 10 [1] | [1] 2 | nudC | NADH pyrophosphatase |
| * | * | ÷ | W3110S.gb | 3444801 | 3444812 | 12 | 4 [0] | [0] 8 | thiG | thiamin biosynthesis ThiGH complex subunit |
| * | * | ÷ | W3110S.gb | 3505621 | 3505627 | 7 | 3 [0] | [0] 3 | metL | fused aspartokinase II and homoserine dehydrogenase II |
| * | * | ÷ | W3110S.gb | 3510189 | 3510215 | 27 | 11 [0] | [0] 4 | priA | primosome factor n' |
| * | * | ÷ | W3110S.gb | 3510273 | 3510281 | 9 | 5 [0] | [1] 6 | priA | primosome factor n' |
| * | * | ÷ | W3110S.gb | 3513982 | 3514003 | 22 | 4 [1] | [0] 7 | ftsN | essential cell division protein |
| * | * | ÷ | W3110S.gb | 3537978 | 3537991 | 14 | 11 [1] | [0] 2 | rhaR | DNA‑binding transcriptional activator, L‑rhamnose‑binding |
| * | * | ÷ | W3110S.gb | 3541970 | 3542048–3542000 | 31–79 | 5 [0] | [0] 3 | rhaA/rhaD | L‑rhamnose isomerase/rhamnulose‑1‑phosphate aldolase |
| * | * | ÷ | W3110S.gb | 3543575 | 3543576 | 2 | 15 [0] | [0] 7 | yiiL/frvA | L‑rhamnose mutarotase/predicted enzyme IIA component of PTS |
| * | * | ÷ | W3110S.gb | 3544527 | 3544541 | 15 | 3 [0] | [0] 5 | frvB | fused predicted PTS enzyme IIBC components |
| * | * | ÷ | W3110S.gb | 3579604 | 3579605 | 2 | 11 [0] | [0] 8 | glnA | glutamine synthetase |
| * | * | ÷ | W3110S.gb | 3592420 | 3592426 | 7 | 2 [0] | [0] 2 | yihF | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 3607220 | 3607237 | 18 | 9 [1] | [0] 2 | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase and 3‑hydroxyacyl‑CoA dehydrogenase |
| * | * | ÷ | W3110S.gb | 3637960 | 3637961 | 2 | 7 [1] | [0] 5 | uvrD | DNA‑dependent ATPase I and helicase II |
| * | * | ÷ | W3110S.gb | 3675047 | 3675073 | 27 | 5 [1] | [0] 6 | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| * | * | ÷ | W3110S.gb | 3727438 | 3727444 | 7 | 3 [0] | [0] 2 | pstA | phosphate transporter subunit |
| * | * | ÷ | W3110S.gb | 3742291 | 3742308 | 18 | 4 [0] | [0] 2 | yieE | predicted phosphopantetheinyl transferase |
| * | * | ÷ | W3110S.gb | 3795429 | 3795453 | 25 | 5 [0] | [0] 11 | ade | cryptic adenine deaminase |
| * | * | ÷ | W3110S.gb | 3799027 | 3799087 | 61 | 13 [0] | [1] 2 | yicM | predicted transporter |
| * | * | ÷ | W3110S.gb | 3811470 | 3811471 | 2 | 6 [0] | [0] 9 | yicE | predicted transporter |
| * | * | ÷ | W3110S.gb | 3821960 | 3821965 | 6 | 3 [0] | [0] 2 | dinD | DNA‑damage‑inducible protein |
| * | * | ÷ | W3110S.gb | 3843302 | 3843312 | 11 | 7 [1] | [0] 11 | rfaL | O‑antigen ligase |
| * | * | ÷ | W3110S.gb | 3859267 | 3859279 | 13 | 6 [0] | [0] 9 | yibK/lldD | predicted rRNA methylase/L‑lactate dehydrogenase, FMN‑linked |
| * | * | ÷ | W3110S.gb | 3912308 | 3912309 | 2 | 12 [0] | [0] 5 | xylB | xylulokinase |
| * | * | ÷ | W3110S.gb | 3916194 | 3916224 | 31 | 2 [1] | [0] 3 | glyS | glycine tRNA synthetase, beta subunit |
| * | * | ÷ | W3110S.gb | 4011088 | 4011114 | 27 | 6 [0] | [1] 6 | rbbA | fused ribosome‑associated ATPases |
| * | * | ÷ | W3110S.gb | 4060691 | 4060702 | 12 | 4 [0] | [0] 5 | yhhX/yhhW | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/hypothetical protein |
| * | * | ÷ | W3110S.gb | 4071001 | 4071005 | 5 | 9 [0] | [0] 4 | glgX | glycogen debranching enzyme |
| * | * | ÷ | W3110S.gb | 4099559 | 4099562 | 4 | 7 [0] | [0] 3 | feoB | fused ferrous iron transporter, protein B |
| * | * | ÷ | W3110S.gb | 4106102 | 4106109 | 8 | 9 [0] | [1] 5 | pck | phosphoenolpyruvate carboxykinase |
| * | * | ÷ | W3110S.gb | 4114933 | 4114939 | 7 | 5 [0] | [1] 2 | nudE/mrcA | ADP‑ribose diphosphatase/fused penicillin‑binding protein 1a murein transglycosylase and murein transpeptidase |
| * | * | ÷ | W3110S.gb | 4135547 | 4135574 | 28 | 6 [0] | [0] 6 | yhfS/frlR | conserved hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 4171781 | 4171788 | 8 | 3 [0] | [0] 2 | chiA | periplasmic endochitinase |
| * | * | ÷ | W3110S.gb | 4175763 | 4175766 | 4 | 3 [0] | [0] 15 | gspL | general secretory pathway component, cryptic |
| * | * | ÷ | W3110S.gb | 4180422 | 4180430 | 9 | 6 [0] | [0] 4 | gspF | general secretory pathway component, cryptic |
| * | * | ÷ | W3110S.gb | 4181294 | 4181307 | 14 | 3 [0] | [0] 3 | gspE | general secretory pathway component, cryptic |
| * | * | ÷ | W3110S.gb | 4213642–4215888 | 4216692–4215891 | 4–3051 | 2 [0] | [0] 2 | [rrlE]–[rrfE] | [rrlE],[rrfE] |
| * | * | ÷ | W3110S.gb | 4282643 | 4282649 | 7 | 13 [0] | [0] 3 | yjcD | predicted permease |
| * | * | ÷ | W3110S.gb | 4289289 | 4289299 | 11 | 12 [0] | [0] 7 | acs | bifunctional acetyl‑CoA synthetase and propionyl‑CoA synthetase |
| * | * | ÷ | W3110S.gb | 4295106 | 4295122 | 17 | 4 [0] | [1] 2 | nrfE | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| * | * | ÷ | W3110S.gb | 4322174 | 4322211 | 38 | 6 [1] | [0] 7 | phnL | carbon‑phosphorus lyase complex subunit |
| * | * | ÷ | W3110S.gb | 4325662 | 4325670 | 9 | 7 [0] | [0] 11 | phnH | carbon‑phosphorus lyase complex subunit |
| * | * | ÷ | W3110S.gb | 4326890 | 4326898 | 9 | 5 [0] | [0] 3 | phnF | transcriptional regulator of phosphonate uptake and biodegradation |
| * | * | ÷ | W3110S.gb | 4327818 | 4327848 | 31 | 6 [1] | [0] 3 | phnE | phosphonate/organophosphate ester transporter subunit |
| * | * | ÷ | W3110S.gb | 4329958 | 4329977 | 20 | 12 [0] | [1] 3 | phnC/phnB | phosphonate/organophosphate ester transporter subunit/conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 4332824 | 4332824 | 1 | 3 [0] | [0] 7 | yjdA | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| * | * | ÷ | W3110S.gb | 4335430 | 4335430 | 1 | 9 [0] | [0] 6 | proP | proline/glycine betaine transporter |
| * | * | ÷ | W3110S.gb | 4339393 | 4339395 | 3 | 3 [0] | [0] 6 | eptA | predicted metal dependent hydrolase |
| * | * | ÷ | W3110S.gb | 4344251 | 4344257 | 7 | 7 [0] | [0] 5 | adiA | biodegradative arginine decarboxylase |
| * | * | ÷ | W3110S.gb | 4354304 | 4354312 | 9 | 8 [0] | [0] 10 | dcuR | DNA‑binding response regulator in two‑component regulatory system with DcuS |
| * | * | ÷ | W3110S.gb | 4401147 | 4401160 | 14 | 7 [1] | [0] 3 | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| * | * | ÷ | W3110S.gb | 4443626 | 4443638 | 13 | 4 [0] | [0] 2 | ytfJ | predicted transcriptional regulator |
| * | * | ÷ | W3110S.gb | 4450231 | 4450234 | 4 | 3 [0] | [0] 5 | ytfN | conserved hypothetical protein |
| * | * | ÷ | W3110S.gb | 4482949 | 4482956 | 8 | 9 [0] | [1] 6 | argI | ornithine carbamoyltransferase 1 |
| * | * | ÷ | W3110S.gb | 4518349 | 4518361 | 13 | 6 [0] | [0] 11 | fecB | iron‑dicitrate transporter subunit |
| * | * | ÷ | W3110S.gb | 4522002 | 4522009 | 8 | 4 [0] | [0] 3 | fecR | transmembrane signal transducer for ferric citrate transport |
| * | * | ÷ | W3110S.gb | 4565308 | 4565322 | 15 | 6 [1] | [0] 2 | yjiH | conserved inner membrane protein |
| * | * | ÷ | W3110S.gb | 4571231 | 4571258 | 28 | 10 [1] | [1] 9 | yjiN | conserved inner membrane protein |
| * | * | ÷ | W3110S.gb | 4572047 | 4572069 | 23 | 3 [1] | [1] 5 | yjiO | multidrug efflux system protein |
| * | * | ÷ | W3110S.gb | 4587054 | 4587071 | 18 | 2 [1] | [1] 2 | hsdM | DNA methylase M |
| * | * | ÷ | W3110S.gb | 4589492 | 4589496 | 5 | 7 [0] | [1] 5 | hsdR | endonuclease R |
| * | * | ÷ | W3110S.gb | 4622256 | 4622271 | 16 | 17 [0] | [1] 16 | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| * | * | ÷ | W3110S.gb | 4622760 | 4622764 | 5 | 2 [0] | [0] 18 | deoC | 2‑deoxyribose‑5‑phosphate aldolase, NAD(P)‑linked |
| * | * | ÷ | W3110S.gb | 4636374 | 4636377 | 4 | 2 [0] | [0] 3 | slt | lytic murein transglycosylase, soluble |
| * | * | ÷ | W3110S.gb | 4645726 | 4645728 | 3 | 8 [0] | [0] 10 | yjtD | predicted rRNA methyltransferase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 46 (1.310) | 482 (17.260) +CGCGTACAACT |
37/86 | NT | 92.3% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 56 (1.590) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 35 (0.990) | 183 (7.060) +AGGGTCCCTAAGTC |
28/80 | NT | 89.6% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 23 (0.650) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | 205097 = | 23 (0.650) | 10 (0.330) +TTATAACA |
4/92 | NT | 30.4% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | = 467579 | 31 (0.880) | intergenic (+125/‑28) | cof/ybaO | thiamin pyrimidine pyrophosphate hydrolase/predicted DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | = 236798 | 13 (0.370) | 206 (11.910) +27 bp |
26/54 | NT | 94.8% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 33 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 31 (0.880) | 7/108 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 346427 = | 37 (1.050) | 40 (1.470) +CAGAGAGCATTT |
5/84 | NT | 55.2% | coding (1241/1587 nt) | prpR | DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 3071050 = | 47 (1.330) | coding (229/1164 nt) | pgk | phosphoglycerate kinase | |||||
| * | ? | W3110S.gb | 713380 = | 9 (0.260) | 503 (15.440) | 45/100 | NT | 95.0% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 45 (1.380) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 48 (1.360) | 839 (23.800) | 48/108 | NT | 95.4% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 32 (0.910) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | = 1114187 | 66 (1.870) | 11 (0.360) +TCCCTCA |
3/94 | NT | 23.2% | coding (1748/2544 nt) | mdoH | glucan biosynthesis: glycosyl transferase |
| ? | W3110S.gb | 2403101 = | 18 (0.510) | coding (1741/2733 nt) | nuoG | NADH:ubiquinone oxidoreductase, chain G | |||||
| * | ? | W3110S.gb | 1209367 = | 30 (0.850) | 26 (1.060) | 5/76 | NT | 46.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 40 (1.630) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | 2018571 = | 0 (0.000) | 35 (1.050) | 7/102 | NT | 100% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 0 (0.000) | 12 (0.350) | 3/104 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 61 (1.760) | 9/106 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 39 (1.150) | 10/104 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 49 (1.420) | 6/106 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 56 (1.590) | 10/108 | NT | 93.3% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 4 (0.110) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 3748799 = | 1 (0.030) | 33 (0.940) | 8/108 | NT | 97.1% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | = 3750592 | 0 (0.000) | 35 (1.070) | 6/100 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | W3110S.gb | 3751792 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | W3110S.gb | = 4547372 | 0 (0.000) | 23 (0.790) | 5/90 | NT | 90.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 5 (0.170) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||