mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000731 | 81 | N→G | 100% | intergenic (–/‑151) | – / → repA | –/replication protein A |
| JC | CP000731 | 6,552 | +28 bp | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| RA | CP000731 | 25,663 | Δ1 bp | 100% | coding (316/333 nt) | USA300HOU_pUSA300HOUMR0031 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 92,987 | A→G | 5.2% | intergenic (‑72/‑65) | ricR_1 ← / → glpE | Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE |
| RA | USA300TCH1516_ALE | 99,276 | G→C | 6.9% | intergenic (+70/+2) | USA300HOU_RS00465 → / ← tetA_1 | hypothetical protein/Tetracycline resistance protein, class C |
| RA | USA300TCH1516_ALE | 110,660 | T→A | 8.9% | I173I (ATT→ATA) | USA300HOU_RS00515 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 111,512 | A→G | 28.4% | S194S (TCA→TCG) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 111,516 | C→A | 26.3% | Q196K (CAA→AAA) | USA300HOU_RS00520 → | putative lipoprotein |
| RA | USA300TCH1516_ALE | 512,643 | A→G | 21.0% | intergenic (+711/‑6052) | recR → / → speA_2 | Recombination protein RecR/Arginine decarboxylase |
| RA | USA300TCH1516_ALE | 622,464 | G→A | 6.3% | S1009S (TCG→TCA) | sdrE → | Serine‑aspartate repeat‑containing protein E |
| RA | USA300TCH1516_ALE | 722,987 | C→T | 5.1% | T42I (ACA→ATA) | feuB → | Iron‑uptake system permease protein FeuB |
| RA | USA300TCH1516_ALE | 722,992 | A→G | 5.9% | I44V (ATA→GTA) | feuB → | Iron‑uptake system permease protein FeuB |
| RA | USA300TCH1516_ALE | 740,322 | G→C | 5.8% | intergenic (+549/+39) | pitA_1 → / ← sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| RA | USA300TCH1516_ALE | 740,328:1 | +G | 5.6% | intergenic (+555/+33) | pitA_1 → / ← sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| RA | USA300TCH1516_ALE | 803,539 | A→G | 6.5% | intergenic (‑239/+31) | USA300HOU_RS03920 ← / ← dtpT | Putative lipid kinase/Di‑/tripeptide transporter |
| RA | USA300TCH1516_ALE | 1,416,458 | A→T | 100% | I216N (ATT→AAT) | oppD_4 ← | Oligopeptide transport ATP‑binding protein OppD |
| RA | USA300TCH1516_ALE | 1,435,073 | G→A | 5.3% | G144S (GGT→AGT) ‡ | dapH → | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase |
| RA | USA300TCH1516_ALE | 1,435,075 | T→A | 5.8% | G144G (GGT→GGA) ‡ | dapH → | 2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑acetyltransferase |
| RA | USA300TCH1516_ALE | 1,513,930 | A→T | 100% | L413F (TTA→TTT) | USA300HOU_RS07375 → | hypothetical protein |
| RA | USA300TCH1516_ALE | 1,646,189 | G→C | 100% | A155G (GCA→GGA) | ypdF ← | Aminopeptidase YpdF |
| RA | USA300TCH1516_ALE | 2,010,363 | C→T | 100% | C146Y (TGT→TAT) | USA300HOU_RS10125 ← | Putative multidrug export ATP‑binding/permease protein |
| RA | USA300TCH1516_ALE | 2,211,248 | A→T | 6.1% | intergenic (+241/+572) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| RA | USA300TCH1516_ALE | 2,211,305 | A→G | 7.4% | intergenic (+298/+515) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| RA | USA300TCH1516_ALE | 2,279,705 | G→A | 100% | A943V (GCA→GTA) | ebh_3 ← | Extracellular matrix‑binding protein ebh |
| RA | USA300TCH1516_ALE | 2,372,413 | C→G | 5.5% | intergenic (+164/+28) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| RA | USA300TCH1516_ALE | 2,372,419 | C→T | 5.3% | intergenic (+170/+22) | USA300TCH1516_02262 → / ← pbuG | hypothetical protein/Guanine/hypoxanthine permease PbuG |
| RA | USA300TCH1516_ALE | 2,504,989 | T→C | 5.7% | intergenic (+293/+111) | USA300HOU_RS12890 → / ← gltT | hypothetical protein/Proton/sodium‑glutamate symport protein |
| RA | USA300TCH1516_ALE | 2,532,298 | A→T | 100% | T15T (ACA→ACT) | femA_3 → | Aminoacyltransferase FemA |
| RA | USA300TCH1516_ALE | 2,774,855 | A→G | 5.5% | D777D (GAT→GAC) | clfB ← | Clumping factor B |
| RA | USA300TCH1516_ALE | 2,779,888 | G→A | 5.2% | A280V (GCA→GTA) | arcD_2 ← | Arginine/ornithine antiporter |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 34 = | 553 (0.420) | 36 (0.030) | 18/146 | NT | 5.1% | intergenic (–/‑198) | –/repA | –/replication protein A |
| ? | CP000731 | 65 = | 830 (0.690) | intergenic (–/‑167) | –/repA | –/replication protein A | |||||
| * | ? | CP000731 | = 64 | 914 (0.700) | 27 (0.040) +33 bp |
14/94 | NT | 9.2% | intergenic (–/‑168) | –/repA | –/replication protein A |
| ? | CP000731 | = 27041 | 0 (0.000) | intergenic (‑194/–) | USA300HOU_pUSA300HOUMR0033/– | partitioning protein/– | |||||
| * | ? | CP000731 | 12000 = | 852 (0.650) | 34 (0.030) | 20/136 | NT | 5.4% | intergenic (+163/+60) | USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 | recombinase/hypothetical protein |
| ? | CP000731 | 12030 = | 466 (0.420) | intergenic (+193/+30) | USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015 | recombinase/hypothetical protein | |||||
| * | ? | CP000731 | 12911 = | NA (NA) | 11 (0.010) | 7/148 | NT | NA | coding (405/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | CP000731 | 12926 = | NA (NA) | coding (420/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
| * | ? | CP000731 | = 12916 | NA (NA) | 18 (0.010) | 11/148 | NT | NA | coding (410/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase |
| ? | CP000731 | = 12919 | NA (NA) | coding (413/675 nt) | USA300HOU_pUSA300HOUMR0016 | IS257 transposase | |||||
| * | ? | CP000731 | = 17001 | NA (NA) | 33 (0.030) | 12/148 | NT | 100% | coding (61/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | = 17016 | 0 (0.000) | coding (46/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | CP000731 | 17008 = | NA (NA) | 29 (0.020) | 10/148 | NT | 100% | coding (54/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase |
| ? | CP000731 | 17011 = | 0 (0.000) | coding (51/675 nt) | USA300HOU_pUSA300HOUMR0021 | IS431 mec transposase | |||||
| * | ? | NC_012417 | = 997 | 4541 (0.420) | 225 (0.020) | 43/138 | NT | 5.5% | intergenic (+9/+6) | USA300HOU_RS14890/USA300HOU_RS15665 | replication protein/hypothetical protein |
| ? | NC_012417 | = 1001 | 3874 (0.420) | intergenic (+13/+2) | USA300HOU_RS14890/USA300HOU_RS15665 | replication protein/hypothetical protein | |||||
| * | ? | NC_012417 | = 1057 | 1798 (0.170) | 122 (0.010) | 29/124 | NT | 7.2% | coding (138/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | = 1071 | 1749 (0.210) | coding (124/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
| * | ? | NC_012417 | = 1992 | 3066 (0.290) | 252 (0.030) | 28/148 | NT | 9.4% | intergenic (+225/+101) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | = 2020 | 2008 (0.200) | intergenic (+253/+73) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | NC_012417 | 1993 = | NA (NA) | 128 (0.010) | 18/148 | NT | 5.8% | intergenic (+226/+100) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein |
| ? | NC_012417 | 2021 = | 2260 (0.210) | intergenic (+254/+72) | USA300HOU_RS14895/USA300HOU_RS14900 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 42564 = | 378 (1.060) | 21 (0.080) +TACATTATAAAATACATATC |
7/120 | NT | 6.9% | coding (1402/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1803072 = | NA (NA) | coding (796/807 nt) | USA300HOU_RS12765 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 92981 | 314 (0.880) | 22 (0.070) | 12/138 | NT | 6.8% | intergenic (‑66/‑71) | ricR_1/glpE | Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE |
| ? | USA300TCH1516_ALE | = 92987 | 330 (1.070) | intergenic (‑72/‑65) | ricR_1/glpE | Copper‑sensing transcriptional repressor RicR/Thiosulfate sulfurtransferase GlpE | |||||
| * | ? | USA300TCH1516_ALE | 133002 = | 356 (1.000) | 21 (0.060) | 11/152 | NT | 5.8% | coding (118/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ |
| ? | USA300TCH1516_ALE | 133036 = | 340 (1.000) | coding (84/996 nt) | yfiZ_1 | putative siderophore transport system permease protein YfiZ | |||||
| * | ? | USA300TCH1516_ALE | = 161203 | 321 (0.900) | 18 (0.050) | 11/150 | NT | 5.3% | coding (730/816 nt) | phnE_1 | Phosphate‑import permease protein PhnE |
| ? | USA300TCH1516_ALE | = 161213 | 338 (1.010) | coding (720/816 nt) | phnE_1 | Phosphate‑import permease protein PhnE | |||||
| * | ? | USA300TCH1516_ALE | 221178 = | 293 (0.820) | 16 (0.050) | 11/146 | NT | 5.6% | intergenic (‑224/+50) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | 221218 = | 268 (0.820) | intergenic (‑264/+10) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
| * | ? | USA300TCH1516_ALE | = 431147 | 290 (0.810) | 16 (0.050) | 11/140 | NT | 5.9% | intergenic (+25/+56) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP |
| ? | USA300TCH1516_ALE | = 431177 | 260 (0.830) | intergenic (+55/+26) | nfrA/tcyP | NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP | |||||
| * | ? | USA300TCH1516_ALE | 441295 = | 328 (0.920) | 18 (0.060) | 12/142 | NT | 6.3% | intergenic (+12/+101) | guaA/USA300HOU_RS02075 | GMP synthase [glutamine‑hydrolyzing]/hypothetical protein |
| ? | USA300TCH1516_ALE | 441323 = | 243 (0.770) | intergenic (+40/+73) | guaA/USA300HOU_RS02075 | GMP synthase [glutamine‑hydrolyzing]/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 512969 = | NA (NA) | 19 (0.060) | 11/142 | NT | NA | intergenic (+1037/‑5726) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 512991 = | NA (NA) | intergenic (+1059/‑5704) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 513404 = | NA (NA) | 17 (0.050) | 14/148 | NT | NA | intergenic (+1472/‑5291) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 513421 = | NA (NA) | intergenic (+1489/‑5274) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 513645 = | NA (NA) | 13 (0.040) | 11/148 | NT | NA | intergenic (+1713/‑5050) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 513672 = | NA (NA) | intergenic (+1740/‑5023) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 514600 = | NA (NA) | 11 (0.030) | 7/146 | NT | NA | intergenic (+2668/‑4095) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 514618 = | NA (NA) | intergenic (+2686/‑4077) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 514606 | NA (NA) | 32 (0.100) | 21/146 | NT | NA | intergenic (+2674/‑4089) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 514610 | NA (NA) | intergenic (+2678/‑4085) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 515130 | NA (NA) | 42 (0.130) | 17/146 | NT | NA | intergenic (+3198/‑3565) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515141 | NA (NA) | intergenic (+3209/‑3554) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 515911 = | NA (NA) | 17 (0.050) | 12/146 | NT | NA | intergenic (+3979/‑2784) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 515928 = | NA (NA) | intergenic (+3996/‑2767) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 515946 | NA (NA) | 8 (0.020) | 5/146 | NT | NA | intergenic (+4014/‑2749) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 515981 | NA (NA) | intergenic (+4049/‑2714) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 516059 | NA (NA) | 18 (0.050) | 12/148 | NT | NA | intergenic (+4127/‑2636) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 516072 | NA (NA) | intergenic (+4140/‑2623) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | = 517213 | NA (NA) | 10 (0.030) | 7/152 | NT | NA | intergenic (+5281/‑1482) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517234 | NA (NA) | intergenic (+5302/‑1461) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 517440 = | NA (NA) | 28 (0.090) | 13/146 | NT | NA | intergenic (+5508/‑1255) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | 517458 = | NA (NA) | intergenic (+5526/‑1237) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| * | ? | USA300TCH1516_ALE | 556088 = | 389 (1.090) | 82 (0.240) +TA |
15/156 | NT | 17.8% | intergenic (+556/‑129) | lysS/USA300TCH1516_00497 | Lysine‑‑tRNA ligase/tRNA‑Val |
| ? | USA300TCH1516_ALE | 561925 = | NA (NA) | intergenic (+3138/+664) | USA300TCH1516_00505/gabR | tRNA‑Ile/HTH‑type transcriptional regulatory protein GabR | |||||
| * | ? | USA300TCH1516_ALE | = 557240 | NA (NA) | 5 (0.010) | 3/152 | NT | NA | intergenic (+298/‑1471) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile |
| ? | USA300TCH1516_ALE | = 557277 | NA (NA) | intergenic (+335/‑1434) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | USA300TCH1516_ALE | = 557256 | NA (NA) | 26 (0.080) | 9/142 | NT | NA | intergenic (+314/‑1455) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile |
| ? | USA300TCH1516_ALE | = 557260 | NA (NA) | intergenic (+318/‑1451) | USA300TCH1516_00504/USA300TCH1516_00505 | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | USA300TCH1516_ALE | = 775565 | 276 (0.770) | 16 (0.050) | 9/142 | NT | 5.8% | coding (549/1182 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase |
| ? | USA300TCH1516_ALE | = 775573 | 278 (0.880) | coding (557/1182 nt) | nagA | N‑acetylglucosamine‑6‑phosphate deacetylase | |||||
| * | ? | USA300TCH1516_ALE | = 805375 | 241 (0.670) | 15 (0.050) | 10/126 | NT | 6.7% | intergenic (‑300/+41) | dtpT/queF | Di‑/tripeptide transporter/NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase |
| ? | USA300TCH1516_ALE | = 805384 | 230 (0.820) | intergenic (‑309/+32) | dtpT/queF | Di‑/tripeptide transporter/NADPH‑dependent 7‑cyano‑7‑deazaguanine reductase | |||||
| * | ? | USA300TCH1516_ALE | 854380 = | 329 (0.920) | 21 (0.060) | 13/148 | NT | 6.6% | intergenic (‑275/‑460) | USA300HOU_RS04170/zipA_1 | Epimerase family protein/Cell division protein ZipA |
| ? | USA300TCH1516_ALE | 854405 = | 295 (0.890) | intergenic (‑300/‑435) | USA300HOU_RS04170/zipA_1 | Epimerase family protein/Cell division protein ZipA | |||||
| * | ? | USA300TCH1516_ALE | 885377 = | 265 (0.740) | 12 (0.040) | 8/134 | NT | 5.3% | intergenic (+6/+67) | pspB/argO | Putative phosphoserine phosphatase 2/Arginine exporter protein ArgO |
| ? | USA300TCH1516_ALE | 885422 = | 211 (0.710) | intergenic (+51/+22) | pspB/argO | Putative phosphoserine phosphatase 2/Arginine exporter protein ArgO | |||||
| * | ? | USA300TCH1516_ALE | = 891727 | 207 (0.580) | 14 (0.040) | 8/152 | NT | 5.3% | intergenic (+145/‑594) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1695091 | 303 (0.890) | intergenic (‑297/+233) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 | |||||
| * | ? | USA300TCH1516_ALE | = 891741 | NA (NA) | 34 (0.110) +CGCCGGCAAG |
6/140 | NT | 16.9% | intergenic (+159/‑580) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1072278 | 192 (0.540) | intergenic (‑750/+55) | USA300HOU_RS05290/folD | Pesticidal crystal protein Cry22Aa/Bifunctional protein FolD protein | |||||
| * | ? | USA300TCH1516_ALE | 1058102 = | 262 (0.730) | 18 (0.060) | 12/144 | NT | 6.9% | intergenic (+143/+64) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1058152 = | 250 (0.780) | intergenic (+193/+14) | slyA_2/atl_1 | Transcriptional regulator SlyA/Bifunctional autolysin | |||||
| * | ? | USA300TCH1516_ALE | 1205029 = | 279 (0.780) | 14 (0.040) | 6/148 | NT | 5.2% | coding (91/195 nt) | USA300HOU_RS15290 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1427013 | NA (NA) | intergenic (‑744/+228) | pstS/cvfB | Phosphate‑binding protein PstS/Conserved virulence factor B | |||||
| * | ? | USA300TCH1516_ALE | = 1205323 | NA (NA) | 46 (0.140) +AGCGAA |
11/148 | NT | 24.9% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | = 2071901 | 150 (0.420) | intergenic (+396/+177) | USA300HOU_RS10445/USA300HOU_RS10450 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1430185 = | 323 (0.900) | 15 (0.050) | 9/140 | NT | 5.6% | intergenic (+294/‑566) | ybiT/lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase |
| ? | USA300TCH1516_ALE | 1430212 = | 228 (0.730) | intergenic (+321/‑539) | ybiT/lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase | |||||
| * | ? | USA300TCH1516_ALE | 1456948 = | 283 (0.790) | 33 (0.100) +GTTTT |
7/150 | NT | 11.0% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918540 | 287 (0.800) | intergenic (‑258/+240) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1456995 = | 237 (0.660) | 34 (0.100) +TTAAA |
9/150 | NT | 11.4% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 328 (0.920) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1662000 = | 341 (0.950) | 16 (0.050) | 15/136 | NT | 5.7% | intergenic (‑87/+68) | USA300HOU_RS08275/rpmG2_2 | 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2 |
| ? | USA300TCH1516_ALE | 1662039 = | 240 (0.790) | intergenic (‑126/+29) | USA300HOU_RS08275/rpmG2_2 | 5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2 | |||||
| * | ? | USA300TCH1516_ALE | 1765719 = | 322 (0.900) | 19 (0.060) | 15/146 | NT | 6.5% | intergenic (‑26/‑377) | valS/tag | Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1 |
| ? | USA300TCH1516_ALE | 1765753 = | 250 (0.770) | intergenic (‑60/‑343) | valS/tag | Valine‑‑tRNA ligase/DNA‑3‑methyladenine glycosylase 1 | |||||
| * | ? | USA300TCH1516_ALE | = 1804868 | 132 (0.370) | 19 (0.060) | 6/146 | NT | 11.5% | intergenic (‑156/+485) | USA300TCH1516_01684/pyk | hypothetical protein/Pyruvate kinase |
| ? | USA300TCH1516_ALE | = 1893298 | 172 (0.530) | intergenic (‑159/+188) | USA300TCH1516_01750/ytpA | hypothetical protein/Phospholipase YtpA | |||||
| * | ? | USA300TCH1516_ALE | 1836934 = | 248 (0.690) | 15 (0.050) | 8/132 | NT | 6.5% | intergenic (+18/+132) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase |
| ? | USA300TCH1516_ALE | 1836982 = | 224 (0.760) | intergenic (+66/+84) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase | |||||
| * | ? | USA300TCH1516_ALE | = 1901318 | 299 (0.840) | 20 (0.060) | 12/142 | NT | 6.6% | intergenic (‑314/‑209) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR |
| ? | USA300TCH1516_ALE | = 1901341 | 305 (0.960) | intergenic (‑337/‑186) | USA300HOU_RS09405/sdpR | hypothetical protein/Transcriptional repressor SdpR | |||||
| * | ? | USA300TCH1516_ALE | 1910766 = | NA (NA) | 39 (0.120) | 11/150 | NT | 56.5% | intergenic (+299/‑256) | crcB_2/USA300TCH1516_01771 | Putative fluoride ion transporter CrcB/hypothetical protein |
| ? | USA300TCH1516_ALE | 1910788 = | 32 (0.090) | intergenic (+321/‑234) | crcB_2/USA300TCH1516_01771 | Putative fluoride ion transporter CrcB/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 1954767 = | 287 (0.800) | 17 (0.060) | 8/138 | NT | 7.0% | intergenic (‑29/+36) | nisB/gdmA | Nisin biosynthesis protein NisB/Lantibiotic gallidermin |
| ? | USA300TCH1516_ALE | 1954795 = | 206 (0.670) | intergenic (‑57/+8) | nisB/gdmA | Nisin biosynthesis protein NisB/Lantibiotic gallidermin | |||||
| * | ? | USA300TCH1516_ALE | 2001795 = | NA (NA) | 31 (0.100) | 14/140 | NT | NA | intergenic (‑18/+2366) | USA300TCH1516_01884/perR | tRNA‑Ile/Peroxide‑responsive repressor PerR |
| ? | USA300TCH1516_ALE | 2179784 = | NA (NA) | intergenic (+3546/+1749) | ilvA/USA300TCH1516_02069 | L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly | |||||
| * | ? | USA300TCH1516_ALE | = 2087015 | 348 (0.970) | 22 (0.070) | 14/142 | NT | 6.3% | intergenic (‑166/‑519) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein |
| ? | USA300TCH1516_ALE | = 2087021 | 350 (1.110) | intergenic (‑172/‑513) | scn_3/chp | Staphylococcal complement inhibitor/Chemotaxis inhibitory protein | |||||
| * | ? | USA300TCH1516_ALE | = 2143383 | 214 (0.600) | 11 (0.040) | 8/132 | NT | 5.8% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 183 (0.620) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2150647 = | 286 (0.800) | 16 (0.050) | 11/136 | NT | 6.0% | intergenic (+310/+57) | agrA/scrK | Accessory gene regulator A/Fructokinase |
| ? | USA300TCH1516_ALE | 2150691 = | 257 (0.850) | intergenic (+354/+13) | agrA/scrK | Accessory gene regulator A/Fructokinase | |||||
| * | ? | USA300TCH1516_ALE | = 2218228 | 235 (0.660) | 13 (0.050) | 6/124 | NT | 6.4% | intergenic (+21/+38) | USA300HOU_RS11330/fabZ | hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ |
| ? | USA300TCH1516_ALE | = 2218242 | 197 (0.710) | intergenic (+35/+24) | USA300HOU_RS11330/fabZ | hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ | |||||
| * | ? | USA300TCH1516_ALE | = 2444885 | 289 (0.810) | 15 (0.050) | 10/140 | NT | 5.4% | intergenic (‑38/+187) | mleN_2/USA300HOU_RS12595 | Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2444897 | 276 (0.880) | intergenic (‑50/+175) | mleN_2/USA300HOU_RS12595 | Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2687481 | 233 (0.650) | 14 (0.050) | 9/138 | NT | 6.2% | intergenic (+35/+34) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2687499 | 222 (0.720) | intergenic (+53/+16) | clpL/USA300HOU_RS13835 | ATP‑dependent Clp protease ATP‑binding subunit ClpL/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2699315 | 183 (0.510) | 12 (0.040) | 8/144 | NT | 6.8% | intergenic (+219/‑72) | copA/copZ | Copper‑exporting P‑type ATPase A/Copper chaperone CopZ |
| ? | USA300TCH1516_ALE | = 2699322 | NA (NA) | intergenic (+226/‑65) | copA/copZ | Copper‑exporting P‑type ATPase A/Copper chaperone CopZ | |||||
| * | ? | USA300TCH1516_ALE | 2731249 = | 346 (0.970) | 17 (0.060) | 11/138 | NT | 5.8% | intergenic (+45/+36) | USA300HOU_RS14055/USA300HOU_RS14060 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2731282 = | 254 (0.830) | intergenic (+78/+3) | USA300HOU_RS14055/USA300HOU_RS14060 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2740979 | 316 (0.880) | 18 (0.060) | 12/132 | NT | 5.8% | intergenic (+21/+60) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase |
| ? | USA300TCH1516_ALE | = 2741001 | 321 (1.090) | intergenic (+43/+38) | yhdG_2/USA300HOU_RS14115 | putative amino acid permease YhdG/Isoleucine 2‑epimerase | |||||
| * | ? | USA300TCH1516_ALE | 2772633 = | 408 (1.140) | 21 (0.070) | 7/134 | NT | 6.7% | intergenic (+7/+53) | phoB/USA300TCH1516_02632 | Alkaline phosphatase 3/hypothetical protein |
| ? | USA300TCH1516_ALE | 2772676 = | 240 (0.800) | intergenic (+50/+10) | phoB/USA300TCH1516_02632 | Alkaline phosphatase 3/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2797807 = | 326 (0.910) | 16 (0.050) | 12/142 | NT | 5.1% | intergenic (+95/+172) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase |
| ? | USA300TCH1516_ALE | 2797838 = | 304 (0.960) | intergenic (+126/+141) | USA300HOU_RS14370/USA300HOU_RS14375 | N‑acetylmuramoyl‑L‑alanine amidase domain‑containing protein/N‑carbamoylsarcosine amidase | |||||