breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation freq annotation gene description
RA 481,301:1 +TATCATC 100% coding (85/648 nt) acrR → transcriptional repressor
RA 894,697 T→C 30.9% C242R (TGC→CGC)  rlmC → 23S rRNA m(5)U747 methyltransferase, SAM‑dependent
RA 982,271:1 +CC 100% coding (168/1089 nt) ompF ← outer membrane porin 1a (Ia;b;F)
MC JC 1,138,045 Δ123 bp 100% coding (1657‑1779/3186 nt) rne ← fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein
JC 2,305,826 +GTC 100% coding (403/1104 nt) ompC ← outer membrane porin protein C
RA 2,332,640 T→C 100% D87G (GAC→GGC)  gyrA ← DNA gyrase (type II topoisomerase), subunit A
RA 2,639,269 C→A 28.9% L472L (CTG→CTT)  pbpC ← penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain
RA 3,159,093 G→T 100% S80R (AGC→AGA)  parC ← DNA topoisomerase IV, subunit A
RA 3,379,843 C→G 12.5% A569P (GCG→CCG)  aaeB ← p‑hydroxybenzoic acid efflux system component
RA 3,476,880 T→C 15.7% M107T (ATG→ACG)  yheT → UPF0017 family putative hydrolase
RA 3,872,089 G→T 100% S464Y (TCT→TAT)  gyrB ← DNA gyrase, subunit B

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 134441 134443 3 2 [0] [1] 2 cueO multicopper oxidase (laccase)
* * ÷ CP009273 151011 151046 36 3 [1] [1] 2 htrE putative outer membrane usher protein
* * ÷ CP009273 553554 553581 28 2 [1] [1] 2 folD/sfmA bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase/FimA homolog
* * ÷ CP009273 578856 578879 24 2 [1] [1] 2 tfaX/appY pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage
* * ÷ CP009273 579917 579937 21 2 [1] [1] 3 appY/ompT global transcriptional activator; DLP12 prophage/DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)
* * ÷ CP009273 879717 879757 41 2 [1] [1] 2 mdfA multidrug efflux system protein
* * ÷ CP009273 941693 941709 17 2 [1] [0] 3 ycaD putative MFS‑type transporter
* * ÷ CP009273 995635 995714 80 2 [1] [1] 2 elfC putative outer membrane fimbrial subunit export usher protein
* * ÷ CP009273 1015848 1015860 13 2 [1] [1] 2 ompA/sulA outer membrane protein A (3a;II*;G;d)/SOS cell division inhibitor
* * ÷ CP009273 1059802 1059813 12 2 [1] [1] 2 yccE uncharacterized protein
* * ÷ CP009273 1098884 1098970 87 2 [1] [1] 2 csgD/csgB csgBAC operon transcriptional regulator/curlin nucleator protein, minor subunit in curli complex
* * ÷ CP009273 1205059 1205074 16 7 [0] [0] 14 stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* * ÷ CP009273 1207588 1207603 16 2 [1] [1] 2 iraM/ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
* * ÷ CP009273 1207670 1207690 21 2 [1] [1] 2 iraM/ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
* * ÷ CP009273 1215136 1215154 19 2 [1] [1] 2 ycgH pseudogene; putative ATP‑binding component of a transport system
* * ÷ CP009273 1225833 1225937 105 2 [1] [1] 2 [hlyE] [hlyE]
* * ÷ CP009273 1320819 1320829 11 2 [1] [1] 2 yciQ enhancer of membrane protein expression; putative inner membrane protein
* * ÷ CP009273 1327570 1327616 47 3 [1] [1] 2 topA DNA topoisomerase I, omega subunit
* * ÷ CP009273 1336001 1336026 26 2 [1] [1] 2 yciM/pyrF envelope integrity maintenance protein; EnvC‑interacting protein/orotidine‑5'‑phosphate decarboxylase
* * ÷ CP009273 1336570 1336586 17 3 [0] [1] 2 pyrF orotidine‑5'‑phosphate decarboxylase
* * ÷ CP009273 1339289 1339306 18 2 [1] [1] 2 gmr cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability
* * ÷ CP009273 1431317 1431376 60 2 [0] [1] 2 ompN/micC outer membrane pore protein N, non‑specific/sRNA antisense regulator of OmpC translation, Hfq‑dependent
* * ÷ CP009273 1445870 1445907 38 2 [1] [0] 2 paaZ fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
* * ÷ CP009273 1459529 1459540 12 2 [1] [1] 2 ynbG/ydbA uncharacterized protein/pseudogene, autotransporter homolog; interrupted by IS2 and IS30
* * ÷ CP009273 1472033 1472044 12 2 [1] [1] 2 ynbA inner membrane protein
* * ÷ CP009273 1496787 1496808 22 2 [1] [1] 3 ydcL lipoprotein
* * ÷ CP009273 1524696 1524722 27 2 [1] [1] 3 ydcD/yncI uncharacterized protein/pseudogene
* * ÷ CP009273 1539482 1539507 26 2 [1] [1] 2 yddK pseudogene, leucine‑rich protein; putative glycoportein
* * ÷ CP009273 1577950 1578003 54 2 [1] [1] 2 ydeO/safA UV‑inducible global regulator, EvgA‑, GadE‑dependent/two‑component system connector membrane protein, EvgSA to PhoQP
* * ÷ CP009273 1622446 1622466 21 3 [1] [1] 2 ydfG NADP‑dependent 3‑hydroxy acid dehydrogenase; malonic semialdehyde reductase
* * ÷ CP009273 1633770 1633792 23 2 [1] [1] 2 [rzpQ]–[rrrQ] [rzpQ],[rrrQ]
* * ÷ CP009273 1634988 1635027 40 2 [1] [1] 2 essQ/cspB Qin prophage; putative S lysis protein/Qin prophage; cold shock protein
* * ÷ CP009273 1652272 1652293 22 2 [1] [1] 2 ynfD/ynfE DUF1161 family periplasmic protein/putative selenate reductase, periplasmic
* * ÷ CP009273 1719967 1720028 62 2 [1] [1] 2 ydhL DUF1289 family protein
* * ÷ CP009273 1749042 1749097 56 2 [1] [1] 2 ydhY/ydhZ putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex/uncharacterized protein
* * ÷ CP009273 1751458 1751560 103 2 [1] [1] 2 pykF/lpp pyruvate kinase I/murein lipoprotein
* * ÷ CP009273 1891696 1891794 99 2 [1] [1] 2 sdaA L‑serine dehydratase 1
* * ÷ CP009273 1940276 1940296 21 2 [1] [1] 2 ruvA/yobI component of RuvABC resolvasome, regulatory subunit/uncharacterized protein
* * ÷ CP009273 1940363 1940408 46 2 [1] [1] 2 [yobI] [yobI]
* * ÷ CP009273 1980166 1980209 44 2 [1] [1] 2 araF/ftnB L‑arabinose transporter subunit/ferritin B, putative ferrous iron reservoir
* * ÷ CP009273 1982087 1982131 45 2 [1] [1] 2 yecR/ftnA lipoprotein, function unknown/ferritin iron storage protein (cytoplasmic)
* * ÷ CP009273 1985399 1985444 46 2 [1] [1] 2 cysT tRNA‑Cys
* * ÷ CP009273 2004725 2004749 25 2 [1] [1] 2 yedN pseudogene, IpaH/YopM family
* * ÷ CP009273 2062003 2062100 98 2 [1] [1] 2 yoeH/yoeA pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion
* * ÷ CP009273 2066455 2066485 31 2 [0] [1] 2 flu CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
* * ÷ CP009273 2080902 2080932 31 2 [0] [1] 2 yeeY LysR family putative transcriptional regulator
* * ÷ CP009273 2097484 2097521 38 2 [0] [1] 2 wbbK lipopolysaccharide biosynthesis protein
* * ÷ CP009273 2099594 2099692 99 2 [1] [1] 2 wbbH O‑antigen polymerase
* * ÷ CP009273 2101665 2101689 25 2 [1] [1] 3 glf UDP‑galactopyranose mutase, FAD/NAD(P)‑binding
* * ÷ CP009273 2131131 2131267 137 3 [1] [1] 2 wza/yegH colanic acid export protein; outer membrane auxillary lipoprotein/inner membrane protein
* * ÷ CP009273 2161790 2161822 33 2 [1] [1] 2 yegR/yegS uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent
* * ÷ CP009273 2185889 2185959 71 2 [1] [1] 2 yehD/yehE putative fimbrial‑like adhesin protein/DUF2574 family protein
* * ÷ CP009273 2270622 2270632 11 2 [1] [1] 2 yejF microcin C transporter, ATP‑binding subunit; ABC family
* * ÷ CP009273 2420060 2420074 15 2 [1] [1] 2 hisJ histidine/lysine/arginine/ornithine transporter subunit
* * ÷ CP009273 2456384 2456466 83 2 [1] [1] 3 fadL/yfdF long‑chain fatty acid outer membrane transporter/uncharacterized protein
* * ÷ CP009273 2463177 2463260 84 2 [1] [1] 2 gtrS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
* * ÷ CP009273 2463670 2463824 155 2 [1] [1] 2 gtrS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
* * ÷ CP009273 2463863 2463873 11 2 [1] [1] 2 gtrS serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage
* * ÷ CP009273 2622956 2623080 125 2 [1] [1] 2 yfgG/yfgH uncharacterized protein/outer membrane integrity lipoprotein
* * ÷ CP009273 2753641 2753771 131 2 [1] [1] 2 [yfjI] [yfjI]
* * ÷ CP009273 2779610 2779664 55 2 [1] [1] 2 ileY/ygaQ tRNA‑Ile/uncharacterized protein; putative enzyme
* * ÷ CP009273 2897193 2897219 27 2 [1] [1] 2 ygcE/queE putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis
* * ÷ CP009273 2898911 2898931 21 2 [1] [1] 2 [yqcG] [yqcG]
* * ÷ CP009273 2982706 2982741 36 2 [1] [1] 3 yqeJ uncharacterized protein
* * ÷ CP009273 2983147 2983211 65 2 [1] [1] 2 [yqeL] [yqeL]
* * ÷ CP009273 2984485 2984620 136 2 [1] [1] 2 ygeF/ygeG pseudogene/SycD‑like chaperone family TPR‑repeat‑containing protein
* * ÷ CP009273 2988198 2988301 104 2 [1] [1] 2 ygeK pseudogene; putative 2‑component transcriptional regulator
* * ÷ CP009273 2988495 2988549 55 2 [1] [1] 2 ygeK/ygeN pseudogene; putative 2‑component transcriptional regulator/pseudogene
* * ÷ CP009273 2988633 2988715 83 2 [1] [1] 2 [ygeN] [ygeN]
* * ÷ CP009273 3072823 3072881 59 2 [0] [1] 2 cmtB/tktA putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding
* * ÷ CP009273 3262558 3262618 61 2 [0] [1] 2 yhaC pentapetide repeats‑related protein
* * ÷ CP009273 3280518 3280529 12 3 [1] [1] 2 agaI/yraH galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein
* * ÷ CP009273 3354431 3354474 44 2 [1] [0] 2 gltD/gltF glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein
* * ÷ CP009273 3378662 3378677 16 2 [1] [1] 2 argR/yhcN l‑arginine‑responsive arginine metabolism regulon transcriptional regulator/cadmium and peroxide resistance protein, stress‑induced
* * ÷ CP009273 3403439 3403471 33 2 [1] [1] 2 prmA/dusB methyltransferase for 50S ribosomal subunit protein L11/tRNA‑dihydrouridine synthase B
* * ÷ CP009273 3463347 3463454 108 2 [1] [1] 2 chiA/tufA periplasmic endochitinase/translation elongation factor EF‑Tu 1
* * ÷ CP009273 3792528 3792556 29 2 [1] [1] 2 waaU lipopolysaccharide core biosynthesis
* * ÷ CP009273 3793130 3793170 41 2 [1] [1] 2 waaZ lipopolysaccharide core biosynthesis protein
* * ÷ CP009273 4531505 4531515 11 2 [1] [1] 2 fimB/fimE tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1225 =22 (1.270)3 (0.180) 3/286 NT 12.3% coding (889/2463 nt) thrA Bifunctional aspartokinase/homoserine dehydrogenase 1
?CP009273 1527 = 22 (1.350)coding (1191/2463 nt) thrA Bifunctional aspartokinase/homoserine dehydrogenase 1
* ? CP009273 48485 =12 (0.690)3 (0.190) 3/284 NT 21.3% coding (717/1863 nt) kefC potassium:proton antiporter
?CP009273 49185 = 11 (0.680)coding (1417/1863 nt) kefC potassium:proton antiporter
* ? CP009273 = 11978933 (1.910)4 (0.240) 4/298 NT 12.1% coding (286/2664 nt) aceE pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding
?CP009273 = 119884 26 (1.530)coding (381/2664 nt) aceE pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding
* ? CP009273 227836 =15 (0.870)4 (0.240) 4/288 NT 20.9% coding (228/801 nt) yafD endo/exonuclease/phosphatase family protein
?CP009273 228359 = 16 (0.980)coding (751/801 nt) yafD endo/exonuclease/phosphatase family protein
* ? CP009273 = 270014NA (NA)6 (0.360) 5/292 NT NA noncoding (847/1195 nt) IS5 repeat region
?CP009273 = 270092 NA (NA)noncoding (769/1195 nt) IS5 repeat region
* ? CP009273 = 270098NA (NA)6 (0.360) 4/292 NT NA noncoding (763/1195 nt) IS5 repeat region
?CP009273 = 270197 NA (NA)noncoding (664/1195 nt) IS5 repeat region
* ? CP009273 = 35494711 (0.640)5 (0.320) 4/274 NT 34.6% coding (438/660 nt) cynT carbonic anhydrase
?CP009273 = 355075 9 (0.580)coding (566/660 nt) cynT carbonic anhydrase
* ? CP009273 356557 =22 (1.270)7 (0.420) 5/292 NT 19.4% coding (855/1155 nt) cynX putative cyanate transporter
?CP009273 356650 = 37 (2.230)coding (948/1155 nt) cynX putative cyanate transporter
* ? CP009273 = 35954219 (1.100)4 (0.240) 4/288 NT 17.8% pseudogene (525/1125 nt) lacZ pseudogene, truncated
?CP009273 = 359651 19 (1.160)pseudogene (416/1125 nt) lacZ pseudogene, truncated
* ? CP009273 360104 =8 (0.460)8 (0.460) 8/304 NT 42.1% intergenic (‑38/+557) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
?CP009273 = 360286 14 (0.810)intergenic (‑220/+375) lacZ/lacI pseudogene, truncated/DNA‑binding transcriptional repressor
* ? CP009273 490033 =25 (1.440)4 (0.240) 4/294 NT 14.2% coding (173/606 nt) recR gap repair protein
?CP009273 490217 = 24 (1.430)coding (357/606 nt) recR gap repair protein
* ? CP009273 = 54021114 (0.810)4 (0.250) 3/286 NT 25.7% coding (538/1236 nt) allC allantoate amidohydrolase
?CP009273 = 540303 10 (0.610)coding (446/1236 nt) allC allantoate amidohydrolase
* ? CP009273 757572 =10 (0.580)6 (0.380) 5/276 NT 32.4% coding (595/1218 nt) sucB dihydrolipoyltranssuccinase
?CP009273 757796 = 16 (1.020)coding (819/1218 nt) sucB dihydrolipoyltranssuccinase
* ? CP009273 = 8321077 (0.400)7 (0.430) 6/284 NT 37.3% coding (301/1086 nt) ybiC putative dehydrogenase
?CP009273 = 832353 17 (1.050)coding (547/1086 nt) ybiC putative dehydrogenase
* ? CP009273 928048 =20 (1.160)4 (0.240) 3/290 NT 20.5% intergenic (‑542/‑3) trxB/lrp thioredoxin reductase, FAD/NAD(P)‑binding/leucine‑responsive global transcriptional regulator
?CP009273 928258 = 12 (0.730)coding (208/495 nt) lrp leucine‑responsive global transcriptional regulator
* ? CP009273 = 104675315 (0.870)6 (0.370) 5/288 NT 31.4% intergenic (‑122/‑164) cspH/cspG stress protein, member of the CspA‑family/cold shock protein homolog, cold‑inducible
?CP009273 = 1046950 12 (0.730)coding (34/213 nt) cspG cold shock protein homolog, cold‑inducible
* ? CP009273 1092774 =1 (0.060)6 (0.370) 4/288 NT 46.2% intergenic (+489/+247) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 1093039 = 13 (0.790)noncoding (70/88 nt) serX tRNA‑Ser
* ? CP009273 1203246 =0 (0.000)13 (0.840) 13/272 NT 100% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 1205075 = 0 (0.000)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? CP009273 = 12032610 (0.000)7 (0.450) 7/272 NT 100% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?CP009273 = 1205058 0 (0.000)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
* ? CP009273 1413126 =10 (0.580)6 (0.360) 3/292 NT 40.5% coding (199/489 nt) sieB Rac prophage; phage superinfection exclusion protein
?CP009273 1413206 = 8 (0.480)coding (279/489 nt) sieB Rac prophage; phage superinfection exclusion protein
* ? CP009273 = 16379307 (0.400)4 (0.240) 3/294 NT 31.0% coding (632/1050 nt) ydfU Qin prophage; uncharacterized protein
?CP009273 = 1638035 11 (0.660)coding (527/1050 nt) ydfU Qin prophage; uncharacterized protein
* ? CP009273 1685314 =9 (0.520)3 (0.180) 3/294 NT 22.5% coding (1206/1509 nt) ydgA DUF945 family protein
?CP009273 1685886 = 12 (0.720)coding (1223/1266 nt) uidC putative outer membrane porin for beta‑glucuronides porin protein
* ? CP009273 = 169223614 (0.810)3 (0.180) 3/290 NT 17.0% coding (62/768 nt) hdhA 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent
?CP009273 = 1692384 16 (0.970)intergenic (‑87/+25) hdhA/malI 7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent/transcriptional repressor of Mal regulon
* ? CP009273 = 174365714 (0.810)3 (0.180) 3/292 NT 25.6% coding (160/813 nt) ydhT FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex
?CP009273 = 1743735 4 (0.240)coding (82/813 nt) ydhT FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex
* ? CP009273 = 177517417 (0.980)3 (0.180) 3/298 NT 18.4% coding (517/939 nt) ydiR putative electron transfer flavoprotein, FAD‑binding subunit
?CP009273 = 1775370 10 (0.590)coding (713/939 nt) ydiR putative electron transfer flavoprotein, FAD‑binding subunit
* ? CP009273 = 17983488 (0.460)4 (0.250) 3/284 NT 26.3% pseudogene (574/1476 nt) arpB pseudogene, ankyrin repeats
?CP009273 = 1798532 15 (0.930)pseudogene (758/1476 nt) arpB pseudogene, ankyrin repeats
* ? CP009273 = 183741011 (0.640)4 (0.240) 3/294 NT 18.8% coding (783/1344 nt) gdhA glutamate dehydrogenase, NADP‑specific
?CP009273 = 1837954 24 (1.430)coding (1327/1344 nt) gdhA glutamate dehydrogenase, NADP‑specific
* ? CP009273 1846333 =7 (0.400)4 (0.250) 4/286 NT 33.9% coding (190/642 nt) pncA nicotinamidase/pyrazinamidase
?CP009273 1846630 = 9 (0.550)coding (487/642 nt) pncA nicotinamidase/pyrazinamidase
* ? CP009273 = 193792220 (1.160)4 (0.240) 4/294 NT 16.9% coding (252/786 nt) znuB zinc transporter subunit: membrane component of ABC superfamily
?CP009273 = 1937991 20 (1.200)coding (321/786 nt) znuB zinc transporter subunit: membrane component of ABC superfamily
* ? CP009273 = 194079519 (1.100)4 (0.240) 4/288 NT 22.9% coding (288/603 nt) yebB DUF830 family protein
?CP009273 = 1940857 9 (0.550)coding (350/603 nt) yebB DUF830 family protein
* ? CP009273 2127296 =7 (0.400)4 (0.240) 3/292 NT 31.1% coding (1838/2163 nt) wzc colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase
?CP009273 2129302 = 11 (0.660)coding (278/444 nt) wzb colanic acid production protein‑tyrosine‑phosphatase; Wzc‑P dephosphorylase
* ? CP009273 2460054 =25 (1.440)4 (0.240) 4/296 NT 18.9% coding (31/1158 nt) intS CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase
?CP009273 2460141 = 10 (0.590)coding (118/1158 nt) intS CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase
* ? CP009273 = 249158723 (1.330)3 (0.190) 3/282 NT 14.5% coding (188/1239 nt) alaC valine‑pyruvate aminotransferase 3
?CP009273 = 2491794 14 (0.870)intergenic (‑20/‑356) alaC/ypdA valine‑pyruvate aminotransferase 3/sensor kinase regulating yhjX; pyruvate‑responsive YpdAB two‑component system
* ? CP009273 = 251933615 (0.870)4 (0.240) 3/288 NT 18.1% coding (880/927 nt) yfeR transcriptional regulator of yefH
?CP009273 = 2519435 22 (1.340)coding (781/927 nt) yfeR transcriptional regulator of yefH
* ? CP009273 2772394 =16 (0.920)3 (0.180) 3/286 NT 15.0% coding (3692/4581 nt) ypjA adhesin‑like autotransporter
?CP009273 2772993 = 19 (1.170)coding (3093/4581 nt) ypjA adhesin‑like autotransporter
* ? CP009273 = 312702110 (0.580)4 (0.240) 3/294 NT 21.8% coding (296/714 nt) yghS putative ATP‑binding protein
?CP009273 = 3127787 19 (1.140)coding (298/693 nt) yghT putative ATP‑binding protein
* ? CP009273 = 321360523 (1.330)4 (0.250) 3/284 NT 14.4% coding (753/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
?CP009273 = 3213757 26 (1.610)coding (905/1380 nt) patA putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent
* ? CP009273 3283074 =11 (0.640)4 (0.250) 3/282 NT 27.4% coding (902/2517 nt) yraJ putative outer membrane protein
?CP009273 3283194 = 11 (0.690)coding (1022/2517 nt) yraJ putative outer membrane protein
* ? CP009273 3379834 =17 (0.980)5 (0.310) 4/286 NT 28.6% coding (1714/1968 nt) aaeB p‑hydroxybenzoic acid efflux system component
?CP009273 3380046 = 9 (0.550)coding (1502/1968 nt) aaeB p‑hydroxybenzoic acid efflux system component
* ? CP009273 = 350319418 (1.040)4 (0.240) 3/298 NT 16.8% coding (1142/1164 nt) yhfX putative pyridoxal 5'‑phosphate binding protein
?CP009273 = 3503367 22 (1.300)coding (969/1164 nt) yhfX putative pyridoxal 5'‑phosphate binding protein
* ? CP009273 = 352887423 (1.330)3 (0.190) 3/284 NT 10.4% coding (354/1353 nt) envZ sensory histidine kinase in two‑component regulatory system with OmpR
?CP009273 = 3528992 30 (1.860)coding (236/1353 nt) envZ sensory histidine kinase in two‑component regulatory system with OmpR
* ? CP009273 = 354605024 (1.390)3 (0.180) 3/296 NT 12.2% intergenic (‑218/‑394) malP/malT maltodextrin phosphorylase/mal regulon transcriptional activator
?CP009273 = 3546940 20 (1.190)coding (497/2706 nt) malT mal regulon transcriptional activator
* ? CP009273 = 3615324NA (NA)5 (0.310) 4/286 NT 100% coding (2773/4236 nt) rhsB Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
?CP009273 = 3615424 0 (0.000)coding (2873/4236 nt) rhsB Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
* ? CP009273 3735261 =15 (0.870)6 (0.380) 4/278 NT 26.8% coding (632/849 nt) yiaJ transcriptional repressor of yiaK‑S operon
?CP009273 3735587 = 19 (1.200)coding (306/849 nt) yiaJ transcriptional repressor of yiaK‑S operon
* ? CP009273 = 377126027 (1.560)4 (0.250) 4/284 NT 13.3% coding (502/1656 nt) lldP L‑lactate permease
?CP009273 = 3771405 27 (1.670)coding (647/1656 nt) lldP L‑lactate permease
* ? CP009273 3789695 =14 (0.810)5 (0.300) 3/294 NT 23.5% coding (357/960 nt) waaC ADP‑heptose:LPS heptosyl transferase I
?CP009273 3789776 = 19 (1.140)coding (438/960 nt) waaC ADP‑heptose:LPS heptosyl transferase I
* ? CP009273 = 380115824 (1.390)6 (0.370) 4/288 NT 21.9% coding (301/1035 nt) waaQ lipopolysaccharide core biosynthesis protein
?CP009273 = 3801449 20 (1.220)coding (10/1035 nt) waaQ lipopolysaccharide core biosynthesis protein
* ? CP009273 = 382440412 (0.690)6 (0.370) 3/282 NT 24.9% coding (588/1710 nt) yicH putative inner membrane‑anchored periplasmic AsmA family protein
?CP009273 = 3824452 25 (1.560)coding (636/1710 nt) yicH putative inner membrane‑anchored periplasmic AsmA family protein
* ? CP009273 3965635 =20 (1.160)4 (0.250) 3/286 NT 17.9% coding (1016/1263 nt) wecC UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
?CP009273 3965743 = 18 (1.110)coding (1124/1263 nt) wecC UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
* ? CP009273 = 399345628 (1.620)3 (0.180) 3/286 NT 10.3% coding (2114/2163 nt) uvrD DNA‑dependent ATPase I and helicase II
?CP009273 = 3993936 26 (1.600)coding (481/765 nt) yigE DUF2233 family protein
* ? CP009273 = 409232818 (1.040)4 (0.240) 4/290 NT 22.1% coding (711/984 nt) kdgT 2‑keto‑3‑deoxy‑D‑gluconate transporter
?CP009273 = 4092542 11 (0.670)coding (925/984 nt) kdgT 2‑keto‑3‑deoxy‑D‑gluconate transporter
* ? CP009273 4143640 =20 (1.160)4 (0.240) 4/290 NT 19.5% coding (1136/1152 nt) argE acetylornithine deacetylase
?CP009273 4143797 = 14 (0.850)coding (979/1152 nt) argE acetylornithine deacetylase
* ? CP009273 4269828 =24 (1.390)4 (0.240) 3/288 NT 16.4% intergenic (+72/‑80) yjcD/yjcE inner membrane putative guanine permease/putative cation/proton antiporter
?CP009273 4269898 = 18 (1.100)intergenic (+142/‑10) yjcD/yjcE inner membrane putative guanine permease/putative cation/proton antiporter
* ? CP009273 4282211 =14 (0.810)3 (0.180) 3/288 NT 11.7% coding (772/1659 nt) nrfE heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
?CP009273 4283692 = 32 (1.950)coding (222/597 nt) nrfG heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG
* ? CP009273 = 428849817 (0.980)5 (0.310) 5/286 NT 20.0% coding (686/2148 nt) fdhF formate dehydrogenase‑H, selenopolypeptide subunit
?CP009273 = 4288751 24 (1.470)coding (433/2148 nt) fdhF formate dehydrogenase‑H, selenopolypeptide subunit
* ? CP009273 4306454 =14 (0.810)5 (0.310) 5/280 NT 25.1% coding (582/1137 nt) phnM ribophosphonate triphosphate hydrolase
?CP009273 4306640 = 17 (1.070)coding (396/1137 nt) phnM ribophosphonate triphosphate hydrolase
* ? CP009273 4307226 =25 (1.440)6 (0.370) 6/286 NT 25.3% coding (487/681 nt) phnL ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP‑binding protein
?CP009273 4307618 = 12 (0.740)coding (95/681 nt) phnL ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP‑binding protein
* ? CP009273 = 431079622 (1.270)5 (0.310) 4/284 NT 17.7% coding (269/585 nt) phnH ribophosphonate triphosphate synthase subunit
?CP009273 = 4310999 26 (1.610)coding (66/585 nt) phnH ribophosphonate triphosphate synthase subunit
* ? CP009273 4368615 =16 (0.920)4 (0.250) 3/284 NT 20.5% coding (147/1134 nt) ampC penicillin‑binding protein; beta‑lactamase, intrinsically weak
?CP009273 4368733 = 16 (0.990)coding (29/1134 nt) ampC penicillin‑binding protein; beta‑lactamase, intrinsically weak
* ? CP009273 4521187 =20 (1.160)4 (0.240) 3/298 NT 16.1% coding (282/1122 nt) sgcX putative endoglucanase with Zn‑dependent exopeptidase domain
?CP009273 4521459 = 22 (1.300)coding (10/1122 nt) sgcX putative endoglucanase with Zn‑dependent exopeptidase domain
* ? CP009273 = 454107426 (1.500)4 (0.240) 4/292 NT 13.3% coding (40/1344 nt) gntP fructuronate transporter
?CP009273 = 4541365 27 (1.620)intergenic (‑252/‑88) gntP/uxuA fructuronate transporter/mannonate hydrolase
* ? CP009273 = 460307320 (1.160)4 (0.250) 3/284 NT 21.2% coding (846/1074 nt) yjjU putative patatin‑like family phospholipase
?CP009273 = 4603185 11 (0.680)coding (958/1074 nt) yjjU putative patatin‑like family phospholipase
* ? CP009273 = 460407322 (1.330)3 (0.180) 3/290 NT 12.0% coding (776/780 nt) yjjV putative DNase
?CP009273 = 4604461 NA (NA)noncoding (388/388 nt) REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences