mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 70,434 | C→T | 35.3% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 30.3% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 20.4% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 22.8% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 23.7% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 22.5% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 25.5% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 24.6% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 25.0% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 231,008 | T→G | 6.4% | intergenic (‑127/‑114) | yafC ← / → yafD | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| RA | 236,101 | A→C | 24.3% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 27.8% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 255,745 | A→T | 6.5% | intergenic (‑29/‑232) | pepD ← / → gpt | aminoacyl‑histidine dipeptidase/guanine‑hypoxanthine phosphoribosyltransferase |
| RA | 310,235 | C→G | 5.5% | S109T (AGC→ACC) | ykgK ← | predicted regulator |
| RA | 310,241 | T→C | 6.7% | Y107C (TAC→TGC) | ykgK ← | predicted regulator |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 2,124,804 | T→C | 9.3% | N105D (AAC→GAC) | cpsG ← | phosphomannomutase |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,587,781 | T→C | 5.8% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,809,581 | G→A | 29.6% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 3,684,513 | G→A | 100% | pseudogene (546/582 nt) pseudogene (1609/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,624 | C→A | 100% | pseudogene (435/582 nt) pseudogene (1498/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,643 | T→G | 100% | pseudogene (416/582 nt) pseudogene (1479/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,687 | A→G | 100% | pseudogene (372/582 nt) pseudogene (1435/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,705 | G→A | 100% | pseudogene (354/582 nt) pseudogene (1417/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,717 | A→G | 100% | pseudogene (342/582 nt) pseudogene (1405/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,858 | A→G | 100% | pseudogene (201/582 nt) pseudogene (1264/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,870 | C→T | 100% | pseudogene (189/582 nt) pseudogene (1252/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,885 | T→C | 100% | pseudogene (174/582 nt) pseudogene (1237/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,921 | A→G | 100% | pseudogene (138/582 nt) pseudogene (1201/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,684,927 | A→G | 100% | pseudogene (132/582 nt) pseudogene (1195/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,038 | C→T | 100% | pseudogene (21/582 nt) pseudogene (1084/1645 nt) |
ilvG ← ilvG ← |
ECK3760:JW3741:b3768; acetolactate synthase II, large subunit, C‑ter fragment ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,100 | A→C | 100% | pseudogene (1022/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,129 | T→A | 100% | pseudogene (993/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| RA | 3,685,143:1 | +AT | 100% | pseudogene (979/1645 nt) pseudogene (979/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,267 | C→T | 100% | pseudogene (855/1645 nt) pseudogene (855/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,312 | G→A | 100% | pseudogene (810/1645 nt) pseudogene (810/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,329 | G→A | 100% | pseudogene (793/1645 nt) pseudogene (793/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,333 | A→G | 100% | pseudogene (789/1645 nt) pseudogene (789/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,354 | T→C | 100% | pseudogene (768/1645 nt) pseudogene (768/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,369 | G→A | 100% | pseudogene (753/1645 nt) pseudogene (753/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| RA | 3,685,375 | C→T | 100% | pseudogene (747/1645 nt) pseudogene (747/984 nt) |
ilvG ← ilvG ← |
ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II ECK3760:JW3740:b3767; acetolactate synthase II, large subunit, N‑ter fragment |
| MC JC | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,911 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| RA | 3,822,707 | T→A | 6.1% | intergenic (‑52/+169) | dinD ← / ← yicC | DNA‑damage‑inducible protein/conserved hypothetical protein |
| RA | 3,824,278 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,324 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,360 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,366 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,372 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,378 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,408 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,512 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,522 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,531:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,781 | T→C | 100% | D45D (GAT→GAC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,814 | G→A | 100% | A56A (GCG→GCA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,826 | C→T | 100% | S60S (TCC→TCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,880 | C→G | 100% | A78A (GCC→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,886 | A→T | 100% | T80T (ACA→ACT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,892 | T→C | 100% | A82A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,898 | A→G | 100% | A84A (GCA→GCG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,913 | C→T | 100% | H89H (CAC→CAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,919 | G→T | 100% | L91L (CTG→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,824,949 | A→G | 100% | E101E (GAA→GAG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,051 | G→A | 100% | E135E (GAG→GAA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,072 | C→T | 100% | A142A (GCC→GCT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,096 | G→A | 100% | V150V (GTG→GTA) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,108 | C→T | 100% | L154L (CTC→CTT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,123 | C→G | 100% | R159R (CGC→CGG) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,204 | C→T | 100% | D186D (GAC→GAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,213 | T→C | 100% | A189A (GCT→GCC) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,825,216 | C→T | 100% | Y190Y (TAC→TAT) | pyrE → | orotate phosphoribosyltransferase |
| RA | 3,864,289 | G→C | 7.0% | S185S (TCC→TCG) | mtlR ← | DNA‑binding transcriptional repressor |
| RA | 4,271,272 | T→C | 7.6% | L190P (CTC→CCC) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,271,277 | A→G | 8.2% | N192D (AAT→GAT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,271,280 | G→C | 8.1% | D193H (GAT→CAT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,271,283 | C→T | 8.8% | Q194* (CAG→TAG) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| MC JC | 4,310,363 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,371,271 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,452,530 | G→C | 6.2% | V1247L (GTA→CTA) | ytfN → | conserved hypothetical protein |
| RA | 4,563,587 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP009048 | 573852–575008 | 575999 | 992–2148 | 15 [14] | [0] 140 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | AP009048 | 721509 | 721540 | 32 | 17 [13] | [12] 15 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | AP009048 | 907969 | 908025 | 57 | 16 [14] | [14] 17 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | AP009048 | 1928913 | 1928978 | 66 | 15 [14] | [14] 15 | ptrB | protease II |
| * | * | ÷ | AP009048 | 4213626–4216715 | 4216715 | 1–3090 | 15 [14] | [14] 17 | rrlE–[rrfE] | rrlE,[rrfE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 20390 = | NA (NA) | 9 (0.170) | 3/94 | NT | NA | coding (119/276 nt) | insA | IS1 repressor protein InsA |
| ? | AP009048 | 20407 = | NA (NA) | coding (102/276 nt) | insA | IS1 repressor protein InsA | |||||
| * | ? | AP009048 | 70061 = | 52 (0.920) | 26 (0.590) +CGCGTACAACT |
17/80 | NT | 32.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 236044 = | 88 (1.560) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | AP009048 | = 71265 | 57 (1.010) | 12 (0.290) +AGGGTCCCTAAGTC |
10/74 | NT | 27.8% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | AP009048 | 3464879 = | 29 (0.520) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | AP009048 | 71653 = | 80 (1.420) | 4 (0.090) | 4/84 | NT | 6.1% | coding (303/765 nt) | yabI | conserved inner membrane protein |
| ? | AP009048 | 71685 = | 58 (1.250) | coding (335/765 nt) | yabI | conserved inner membrane protein | |||||
| * | ? | AP009048 | 154410 = | 59 (1.050) | 4 (0.070) | 3/102 | NT | 6.7% | coding (1017/2598 nt) | htrE | predicted outer membrane usher protein |
| ? | AP009048 | 154431 = | 53 (0.940) | coding (996/2598 nt) | htrE | predicted outer membrane usher protein | |||||
| * | ? | AP009048 | = 182326 | 60 (1.070) | 3 (0.070) | 3/82 | NT | 5.1% | intergenic (+18/‑137) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator |
| ? | AP009048 | = 182334 | 64 (1.410) | intergenic (+26/‑129) | degP/cdaR | serine endoprotease (protease Do), membrane‑associated/DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | 223991 = | NA (NA) | 10 (0.200) | 5/92 | NT | NA | noncoding (221/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224012 = | NA (NA) | noncoding (242/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 224254 = | NA (NA) | 3 (0.060) | 3/94 | NT | NA | noncoding (484/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224282 = | NA (NA) | noncoding (512/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225047 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (1277/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225075 = | NA (NA) | noncoding (1305/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225078 = | NA (NA) | 6 (0.120) | 5/88 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225092 = | NA (NA) | 4 (0.080) | 3/96 | NT | NA | noncoding (1322/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225114 = | NA (NA) | noncoding (1344/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 225126 | NA (NA) | 4 (0.080) | 3/92 | NT | NA | noncoding (1356/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | = 225135 | NA (NA) | noncoding (1365/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225282 = | NA (NA) | 7 (0.140) | 3/92 | NT | 100% | noncoding (1512/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 225294 = | 0 (0.000) | noncoding (1524/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | AP009048 | 225392 = | NA (NA) | 3 (0.060) | 3/92 | NT | NA | noncoding (12/77 nt) | ileV | tRNA‑Ile |
| ? | AP009048 | 225417 = | NA (NA) | noncoding (37/77 nt) | ileV | tRNA‑Ile | |||||
| * | ? | AP009048 | 225680 = | 30 (0.530) | 4 (0.080) | 3/90 | NT | 13.1% | intergenic (+105/‑79) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA |
| ? | AP009048 | = 3468101 | NA (NA) | intergenic (‑61/+133) | rrlB/gltT | 23S ribosomal RNA/tRNA‑Glu | |||||
| * | ? | AP009048 | 225889 = | NA (NA) | 4 (0.080) | 3/88 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 225915 | NA (NA) | 5 (0.110) | 5/86 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 225926 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 226403 | NA (NA) | 3 (0.060) | 3/90 | NT | NA | noncoding (645/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 226408 | NA (NA) | noncoding (650/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 226815 = | NA (NA) | 3 (0.060) | 3/96 | NT | NA | noncoding (1057/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 226840 = | NA (NA) | noncoding (1082/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 227072 = | NA (NA) | 4 (0.080) | 4/94 | NT | NA | noncoding (1314/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 227097 = | NA (NA) | noncoding (1339/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 228057 = | NA (NA) | 5 (0.100) | 3/92 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 228278 = | NA (NA) | 4 (0.080) | 4/96 | NT | NA | noncoding (2520/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 228303 = | NA (NA) | noncoding (2545/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 228452 | NA (NA) | 5 (0.100) | 4/94 | NT | NA | noncoding (2694/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | = 228472 | NA (NA) | noncoding (2714/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 236798 | 40 (0.710) | 15 (0.570) +27 bp |
9/48 | NT | 37.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | AP009048 | 4124502 = | 67 (1.190) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | AP009048 | = 274373 | NA (NA) | 61 (1.080) | 32/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | AP009048 | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | AP009048 | 311361 = | 58 (1.030) | 3 (0.060) | 3/88 | NT | 6.4% | coding (26/228 nt) | ykgL | hypothetical protein |
| ? | AP009048 | 311384 = | 37 (0.760) | coding (49/228 nt) | ykgL | hypothetical protein | |||||
| * | ? | AP009048 | 314453 = | 60 (1.070) | 56 (1.040) +TC |
42/98 | NT | 66.0% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | 3932928 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | 314454 = | NA (NA) | 4 (0.080) | 3/94 | NT | NA | coding (874/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | 314485 = | NA (NA) | intergenic (+17/‑21) | eaeH/insE | attaching and effacing protein, pathogenesis factor/IS3 element protein | |||||
| * | ? | AP009048 | = 315707 | NA (NA) | 66 (1.170) | 44/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | = 318236 | 70 (1.240) | 4 (0.080) | 3/92 | NT | 5.4% | coding (990/1326 nt) | ykgC | predicted oxidoreductase with FAD/NAD(P)‑binding domain and dimerization domain |
| ? | AP009048 | = 318248 | 78 (1.540) | coding (978/1326 nt) | ykgC | predicted oxidoreductase with FAD/NAD(P)‑binding domain and dimerization domain | |||||
| * | ? | AP009048 | 381056 = | NA (NA) | 4 (0.080) | 4/90 | NT | NA | coding (159/906 nt) | insD | IS2 insertion element transposase InsAB' |
| ? | AP009048 | 381083 = | NA (NA) | coding (186/906 nt) | insD | IS2 insertion element transposase InsAB' | |||||
| * | ? | AP009048 | = 427841 | 56 (1.000) | 3 (0.060) | 3/90 | NT | 5.5% | coding (971/1848 nt) | secD | SecYEG protein translocase auxillary subunit |
| ? | AP009048 | = 427846 | 54 (1.090) | coding (976/1848 nt) | secD | SecYEG protein translocase auxillary subunit | |||||
| * | ? | AP009048 | = 443799 | 37 (0.660) | 3 (0.080) | 3/66 | NT | 9.0% | intergenic (‑60/‑108) | panE/yajQ | 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein |
| ? | AP009048 | = 443811 | 37 (1.020) | intergenic (‑72/‑96) | panE/yajQ | 2‑dehydropantoate reductase, NADPH‑specific/predicted nucleotide binding protein | |||||
| * | ? | AP009048 | 533287 = | 75 (1.330) | 3 (0.060) | 3/90 | NT | 5.3% | coding (148/1782 nt) | gcl | glyoxylate carboligase |
| ? | AP009048 | 533311 = | 42 (0.850) | coding (172/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | AP009048 | 566000 = | NA (NA) | 68 (1.210) | 42/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | AP009048 | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | AP009048 | = 578470 | 49 (0.870) | 5 (0.100) | 5/94 | NT | 9.8% | coding (348/411 nt) | ybcV | hypothetical protein |
| ? | AP009048 | = 578482 | 47 (0.910) | coding (336/411 nt) | ybcV | hypothetical protein | |||||
| * | ? | AP009048 | 597762 = | 50 (0.890) | 5 (0.090) | 4/96 | NT | 9.1% | coding (1061/1224 nt) | cusB | copper/silver efflux system, membrane fusion protein |
| ? | AP009048 | 597786 = | 53 (1.000) | coding (1085/1224 nt) | cusB | copper/silver efflux system, membrane fusion protein | |||||
| * | ? | AP009048 | 655242 = | NA (NA) | 4 (0.080) | 4/94 | NT | NA | coding (962/981 nt) | insH | IS5 element protein |
| ? | AP009048 | 655260 = | NA (NA) | coding (980/981 nt) | insH | IS5 element protein | |||||
| * | ? | AP009048 | 713380 = | 51 (0.910) | 16 (0.310) | 16/94 | NT | 26.9% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | AP009048 | = 4125338 | 40 (0.770) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | AP009048 | = 713954 | 66 (1.170) | 28 (0.500) | 26/102 | NT | 29.2% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | AP009048 | 2809398 = | 70 (1.240) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | AP009048 | = 827256 | 48 (0.850) | 3 (0.060) | 3/92 | NT | 6.0% | coding (419/1134 nt) | ybhS | predicted transporter subunit |
| ? | AP009048 | = 827272 | 50 (0.990) | coding (403/1134 nt) | ybhS | predicted transporter subunit | |||||
| * | ? | AP009048 | = 925128 | 43 (0.760) | 3 (0.060) | 3/90 | NT | 7.1% | coding (1443/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| ? | AP009048 | = 925139 | 41 (0.830) | coding (1454/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity | |||||
| * | ? | AP009048 | = 950019 | 62 (1.100) | 4 (0.080) | 3/90 | NT | 8.0% | intergenic (‑29/‑71) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein |
| ? | AP009048 | = 950033 | 37 (0.750) | intergenic (‑43/‑57) | ycaN/ycaK | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein | |||||
| * | ? | AP009048 | 952526 = | 66 (1.170) | 4 (0.090) | 4/82 | NT | 7.3% | coding (1451/2283 nt) | pflB | pyruvate formate lyase I |
| ? | AP009048 | 952557 = | 48 (1.060) | coding (1420/2283 nt) | pflB | pyruvate formate lyase I | |||||
| * | ? | AP009048 | = 958005 | 48 (0.850) | 3 (0.060) | 3/88 | NT | 6.0% | intergenic (+129/‑70) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase |
| ? | AP009048 | = 958017 | 52 (1.070) | intergenic (+141/‑58) | ycaP/serC | conserved inner membrane protein/3‑phosphoserine/phosphohydroxythreonine aminotransferase | |||||
| * | ? | AP009048 | 1209367 = | 23 (0.410) | 28 (0.730) | 20/70 | NT | 66.8% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | 1211196 = | 12 (0.310) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | = 1209382 | 24 (0.430) | 31 (0.800) | 23/70 | NT | 68.5% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | AP009048 | = 1211179 | 12 (0.310) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | AP009048 | = 1220342 | 66 (1.170) | 3 (0.060) | 3/94 | NT | 5.2% | coding (1438/1524 nt) | ycgG | conserved inner membrane protein |
| ? | AP009048 | = 1220359 | 49 (0.940) | coding (1455/1524 nt) | ycgG | conserved inner membrane protein | |||||
| * | ? | AP009048 | 1289322 = | 31 (0.550) | 4 (0.080) | 4/94 | NT | 12.6% | intergenic (‑123/+37) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase |
| ? | AP009048 | 1289346 = | 27 (0.520) | intergenic (‑147/+13) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase | |||||
| * | ? | AP009048 | = 1293974 | 32 (0.570) | 3 (0.060) | 3/84 | NT | 11.2% | intergenic (+32/+112) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| ? | AP009048 | = 1293984 | 21 (0.450) | intergenic (+42/+102) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS | |||||
| * | ? | AP009048 | = 1414562 | 46 (0.820) | 3 (0.060) | 3/90 | NT | 6.9% | coding (388/1236 nt) | intR | integrase |
| ? | AP009048 | = 1414578 | 41 (0.830) | coding (372/1236 nt) | intR | integrase | |||||
| * | ? | AP009048 | = 1435237 | NA (NA) | 3 (0.060) | 3/90 | NT | NA | coding (152/591 nt) | pinR | predicted site‑specific recombinase |
| ? | AP009048 | = 1435245 | NA (NA) | coding (144/591 nt) | pinR | predicted site‑specific recombinase | |||||
| * | ? | AP009048 | = 1455472 | 57 (1.010) | 4 (0.080) | 3/96 | NT | 7.6% | intergenic (‑116/‑169) | maoC/paaA | fused aldehyde dehydrogenase and enoyl‑CoA hydratase/predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation |
| ? | AP009048 | = 1455497 | 43 (0.810) | intergenic (‑141/‑144) | maoC/paaA | fused aldehyde dehydrogenase and enoyl‑CoA hydratase/predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation | |||||
| * | ? | AP009048 | = 1632687 | 20 (0.360) | 3 (0.060) | 3/90 | NT | 12.6% | intergenic (‑60/+29) | ydfI/ydfJ | predicted mannonate dehydrogenase/predicted transporter |
| ? | AP009048 | = 1632703 | 24 (0.480) | intergenic (‑76/+13) | ydfI/ydfJ | predicted mannonate dehydrogenase/predicted transporter | |||||
| * | ? | AP009048 | 1636657 = | NA (NA) | 5 (0.100) | 3/92 | NT | 100% | coding (905/963 nt) | stfQ | predicted side tail fibre assembly protein |
| ? | AP009048 | 1636667 = | 0 (0.000) | coding (895/963 nt) | stfQ | predicted side tail fibre assembly protein | |||||
| * | ? | AP009048 | = 1818339 | 67 (1.190) | 5 (0.100) | 3/92 | NT | 6.9% | coding (511/750 nt) | chbG | conserved hypothetical protein |
| ? | AP009048 | = 1818354 | 75 (1.480) | coding (496/750 nt) | chbG | conserved hypothetical protein | |||||
| * | ? | AP009048 | = 1899549 | 48 (0.850) | 3 (0.060) | 3/92 | NT | 7.0% | coding (904/1365 nt) | sdaA | L‑serine deaminase I |
| ? | AP009048 | = 1899562 | 37 (0.730) | coding (917/1365 nt) | sdaA | L‑serine deaminase I | |||||
| * | ? | AP009048 | 1933441 = | 53 (0.940) | 3 (0.060) | 3/94 | NT | 5.1% | coding (847/1179 nt) | purT | phosphoribosylglycinamide formyltransferase 2 |
| ? | AP009048 | 1933468 = | 63 (1.210) | coding (874/1179 nt) | purT | phosphoribosylglycinamide formyltransferase 2 | |||||
| * | ? | AP009048 | = 1941618 | 41 (0.730) | 4 (0.080) | 3/90 | NT | 7.8% | coding (290/972 nt) | lpxM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | AP009048 | = 1941633 | 59 (1.190) | coding (275/972 nt) | lpxM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
| * | ? | AP009048 | 2018571 = | 6 (0.110) | 39 (0.740) | 27/96 | NT | 87.4% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | AP009048 | = 2018583 | 0 (0.000) | 56 (1.040) | 42/98 | NT | 100% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | AP009048 | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | AP009048 | = 2037434 | 56 (1.000) | 3 (0.070) | 3/78 | NT | 6.4% | intergenic (+54/‑538) | yedS/hchA | ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone |
| ? | AP009048 | = 2037442 | 45 (1.050) | intergenic (+62/‑530) | yedS/hchA | ECK1962:JW5319+JW1948+JW1949:b4496; hypothetical protein/Hsp31 molecular chaperone | |||||
| * | ? | AP009048 | 2044974 = | 48 (0.850) | 3 (0.060) | 3/90 | NT | 6.9% | coding (470/531 nt) | yodB | predicted cytochrome |
| ? | AP009048 | 2044999 = | 38 (0.770) | coding (495/531 nt) | yodB | predicted cytochrome | |||||
| * | ? | AP009048 | = 2108326 | 20 (0.360) | 3 (0.060) | 3/88 | NT | 12.7% | coding (1038/1167 nt) | wbbH | O‑antigen polymerase |
| ? | AP009048 | = 2108333 | 24 (0.490) | coding (1031/1167 nt) | wbbH | O‑antigen polymerase | |||||
| * | ? | AP009048 | 2109295 = | 40 (0.710) | 4 (0.080) | 3/90 | NT | 9.4% | coding (69/1167 nt) | wbbH | O‑antigen polymerase |
| ? | AP009048 | 2109315 = | 42 (0.850) | coding (49/1167 nt) | wbbH | O‑antigen polymerase | |||||
| * | ? | AP009048 | 2124135 = | 43 (0.760) | 3 (0.060) | 3/92 | NT | 6.5% | coding (982/1371 nt) | cpsG | phosphomannomutase |
| ? | AP009048 | 2124152 = | 48 (0.950) | coding (965/1371 nt) | cpsG | phosphomannomutase | |||||
| * | ? | AP009048 | = 2139625 | 52 (0.920) | 4 (0.080) | 4/92 | NT | 8.3% | intergenic (‑245/‑414) | wza/yegH | lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins |
| ? | AP009048 | = 2139640 | 42 (0.830) | intergenic (‑260/‑399) | wza/yegH | lipoprotein required for capsular polysaccharide translocation through the outer membrane/fused predicted membrane proteins | |||||
| * | ? | AP009048 | 2155855 = | 47 (0.840) | 7 (0.140) | 6/88 | NT | 14.5% | intergenic (‑590/‑298) | yegL/mdtA | conserved hypothetical protein/multidrug efflux system, subunit A |
| ? | AP009048 | 2155875 = | 42 (0.870) | intergenic (‑610/‑278) | yegL/mdtA | conserved hypothetical protein/multidrug efflux system, subunit A | |||||
| * | ? | AP009048 | = 2168450 | 51 (0.910) | 3 (0.060) | 3/90 | NT | 6.2% | coding (646/1362 nt) | yegQ | predicted peptidase |
| ? | AP009048 | = 2168454 | 45 (0.910) | coding (650/1362 nt) | yegQ | predicted peptidase | |||||
| * | ? | AP009048 | 2172308 = | NA (NA) | 69 (1.250) | 41/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | AP009048 | = 3920279 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | = 2173564 | NA (NA) | 84 (1.520) | 51/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | 3920276 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | AP009048 | = 2173565 | NA (NA) | 43 (0.760) | 36/102 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | = 3932931 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | AP009048 | 2175760 = | 34 (0.600) | 3 (0.060) | 3/90 | NT | 9.0% | coding (654/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS |
| ? | AP009048 | 2175793 = | 31 (0.620) | coding (621/1356 nt) | gatC | galactitol‑specific enzyme IIC component of PTS | |||||
| * | ? | AP009048 | 2222066 = | 64 (1.140) | 3 (0.060) | 3/94 | NT | 5.2% | coding (750/918 nt) | yehZ | predicted transporter subunit |
| ? | AP009048 | 2222089 = | 51 (0.980) | coding (727/918 nt) | yehZ | predicted transporter subunit | |||||
| * | ? | AP009048 | = 2263908 | 40 (0.710) | 3 (0.060) | 3/92 | NT | 6.7% | coding (837/1692 nt) | fruA | fused fructose‑specific PTS enzyme IIB'BC components |
| ? | AP009048 | = 2263914 | 47 (0.930) | coding (831/1692 nt) | fruA | fused fructose‑specific PTS enzyme IIB'BC components | |||||
| * | ? | AP009048 | 2273885 = | 47 (0.840) | 3 (0.060) | 3/96 | NT | 6.2% | intergenic (+6/‑175) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein |
| ? | AP009048 | 2273917 = | 47 (0.890) | intergenic (+38/‑143) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein | |||||
| * | ? | AP009048 | = 2348802 | 40 (0.710) | 5 (0.100) | 3/90 | NT | 11.5% | coding (38/3753 nt) | yfaL | adhesin |
| ? | AP009048 | = 2348810 | 42 (0.850) | coding (30/3753 nt) | yfaL | adhesin | |||||
| * | ? | AP009048 | 2358808 = | 64 (1.140) | 3 (0.060) | 3/88 | NT | 5.7% | coding (1492/1629 nt) | glpA | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding |
| ? | AP009048 | 2358839 = | 44 (0.910) | coding (1523/1629 nt) | glpA | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)‑binding | |||||
| * | ? | AP009048 | = 2361972 | 68 (1.210) | 4 (0.080) | 3/92 | NT | 5.7% | coding (399/900 nt) | yfaD | conserved hypothetical protein |
| ? | AP009048 | = 2361986 | 70 (1.380) | coding (413/900 nt) | yfaD | conserved hypothetical protein | |||||
| * | ? | AP009048 | = 2365086 | 49 (0.870) | 3 (0.060) | 3/92 | NT | 6.0% | coding (1011/1218 nt) | yfaW | predicted enolase |
| ? | AP009048 | = 2365110 | 50 (0.990) | coding (987/1218 nt) | yfaW | predicted enolase | |||||
| * | ? | AP009048 | = 2412225 | NA (NA) | 68 (1.210) | 46/102 | NT | 94.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 4 (0.070) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | AP009048 | 2507021 = | 49 (0.870) | 4 (0.080) | 3/90 | NT | 8.5% | coding (446/858 nt) | ypdC | predicted DNA‑binding protein |
| ? | AP009048 | 2507058 = | 43 (0.870) | coding (483/858 nt) | ypdC | predicted DNA‑binding protein | |||||
| * | ? | AP009048 | 2535433 = | 46 (0.820) | 3 (0.060) | 3/88 | NT | 7.6% | coding (190/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent |
| ? | AP009048 | 2535454 = | 33 (0.680) | coding (169/2016 nt) | ligA | DNA ligase, NAD(+)‑dependent | |||||
| * | ? | AP009048 | 2634886 = | 75 (1.330) | 7 (0.130) | 5/96 | NT | 7.9% | coding (1127/1473 nt) | der | predicted GTP‑binding protein |
| ? | AP009048 | 2634908 = | 93 (1.760) | coding (1105/1473 nt) | der | predicted GTP‑binding protein | |||||
| * | ? | AP009048 | 2675410 = | 60 (1.070) | 3 (0.060) | 3/96 | NT | 5.3% | coding (72/999 nt) | yphD | predicted sugar transporter subunit |
| ? | AP009048 | 2675430 = | 50 (0.940) | coding (52/999 nt) | yphD | predicted sugar transporter subunit | |||||
| * | ? | AP009048 | 2724856 = | NA (NA) | 3 (0.060) | 3/90 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA |
| ? | AP009048 | 2724880 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | AP009048 | 2727225 = | NA (NA) | 5 (0.100) | 5/92 | NT | NA | noncoding (616/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727251 = | NA (NA) | noncoding (590/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | AP009048 | 2727295 = | NA (NA) | 4 (0.080) | 4/94 | NT | NA | noncoding (546/2904 nt) | rrlG | 23S ribosomal RNA |
| ? | AP009048 | 2727314 = | NA (NA) | noncoding (527/2904 nt) | rrlG | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 2728864 | NA (NA) | 5 (0.100) | 4/94 | NT | NA | noncoding (950/1542 nt) | rrsG | 16S ribosomal RNA |
| ? | AP009048 | = 2728876 | NA (NA) | noncoding (938/1542 nt) | rrsG | 16S ribosomal RNA | |||||
| * | ? | AP009048 | = 2729852 | NA (NA) | 5 (0.100) | 3/88 | NT | NA | intergenic (‑39/+404) | rrsG/clpB | 16S ribosomal RNA/protein disaggregation chaperone |
| ? | AP009048 | = 2729877 | NA (NA) | intergenic (‑64/+379) | rrsG/clpB | 16S ribosomal RNA/protein disaggregation chaperone | |||||
| * | ? | AP009048 | 2750759 = | 55 (0.980) | 3 (0.060) | 3/94 | NT | 5.7% | coding (309/1662 nt) | recN | recombination and repair protein |
| ? | AP009048 | 2750777 = | 48 (0.930) | coding (327/1662 nt) | recN | recombination and repair protein | |||||
| * | ? | AP009048 | 2751068 = | 58 (1.030) | 3 (0.060) | 3/92 | NT | 5.7% | coding (618/1662 nt) | recN | recombination and repair protein |
| ? | AP009048 | 2751097 = | 47 (0.930) | coding (647/1662 nt) | recN | recombination and repair protein | |||||
| * | ? | AP009048 | 2764547 = | 45 (0.800) | 3 (0.060) | 3/90 | NT | 6.8% | intergenic (‑115/‑27) | yfjM/yfjN | hypothetical protein/hypothetical protein |
| ? | AP009048 | 2764565 = | 43 (0.870) | intergenic (‑133/‑9) | yfjM/yfjN | hypothetical protein/hypothetical protein | |||||
| * | ? | AP009048 | 2859968 = | 88 (1.560) | 3 (0.070) | 3/82 | NT | 5.1% | intergenic (‑48/‑118) | ygbI/ygbJ | predicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain |
| ? | AP009048 | 2860005 = | 40 (0.880) | intergenic (‑85/‑81) | ygbI/ygbJ | predicted DNA‑binding transcriptional regulator/predicted dehydrogenase, with NAD(P)‑binding Rossmann‑fold domain | |||||
| * | ? | AP009048 | = 2885791 | 66 (1.170) | 8 (0.160) | 7/88 | NT | 12.2% | coding (85/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family |
| ? | AP009048 | = 2885805 | 58 (1.190) | coding (71/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family | |||||
| * | ? | AP009048 | = 2923137 | 89 (1.580) | 5 (0.100) | 4/90 | NT | 5.2% | intergenic (‑368/+254) | yqcC/syd | conserved hypothetical protein/hypothetical protein |
| ? | AP009048 | = 2923153 | 102 (2.050) | intergenic (‑384/+238) | yqcC/syd | conserved hypothetical protein/hypothetical protein | |||||
| * | ? | AP009048 | = 2934673 | 67 (1.190) | 4 (0.080) | 3/92 | NT | 6.3% | coding (434/1776 nt) | fucI | L‑fucose isomerase |
| ? | AP009048 | = 2934691 | 59 (1.160) | coding (452/1776 nt) | fucI | L‑fucose isomerase | |||||
| * | ? | AP009048 | 2963582 = | 71 (1.260) | 4 (0.080) | 3/90 | NT | 6.8% | coding (230/795 nt) | thyA | thymidylate synthetase |
| ? | AP009048 | 2963610 = | 47 (0.950) | coding (202/795 nt) | thyA | thymidylate synthetase | |||||
| * | ? | AP009048 | = 2970629 | 45 (0.800) | 4 (0.080) | 3/94 | NT | 9.1% | coding (377/1041 nt) | tas | predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase |
| ? | AP009048 | = 2970640 | 38 (0.730) | coding (388/1041 nt) | tas | predicted oxidoreductase, NADP(H)‑dependent aldo‑keto reductase | |||||
| * | ? | AP009048 | 3008847 = | 62 (1.100) | 4 (0.080) | 3/94 | NT | 6.8% | coding (164/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase |
| ? | AP009048 | 3008865 = | 52 (1.000) | coding (182/1386 nt) | hyuA | D‑stereospecific phenylhydantoinase | |||||
| * | ? | AP009048 | = 3037146 | 48 (0.850) | 5 (0.100) | 4/88 | NT | 10.8% | coding (333/711 nt) | dsbC | protein disulfide isomerase II |
| ? | AP009048 | = 3037153 | 41 (0.840) | coding (326/711 nt) | dsbC | protein disulfide isomerase II | |||||
| * | ? | AP009048 | 3057720 = | 46 (0.820) | 4 (0.080) | 3/88 | NT | 8.7% | coding (262/660 nt) | rpiA | ribosephosphate isomerase, constitutive |
| ? | AP009048 | 3057746 = | 44 (0.910) | coding (236/660 nt) | rpiA | ribosephosphate isomerase, constitutive | |||||
| * | ? | AP009048 | = 3124567 | 62 (1.100) | 5 (0.100) | 3/92 | NT | 8.0% | coding (612/1053 nt) | glcE | glycolate oxidase FAD binding subunit |
| ? | AP009048 | = 3124578 | 59 (1.160) | coding (601/1053 nt) | glcE | glycolate oxidase FAD binding subunit | |||||
| * | ? | AP009048 | = 3261133 | 0 (0.000) | 42 (0.810) | 30/94 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | AP009048 | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
| * | ? | AP009048 | = 3265510 | 72 (1.280) | 4 (0.080) | 3/90 | NT | 6.1% | coding (374/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | AP009048 | = 3265514 | 60 (1.210) | coding (370/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
| * | ? | AP009048 | 3307000 = | 53 (0.940) | 4 (0.080) | 3/92 | NT | 8.1% | coding (716/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | AP009048 | 3307021 = | 43 (0.850) | coding (695/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | AP009048 | = 3316062 | 67 (1.190) | 3 (0.060) | 3/88 | NT | 5.1% | coding (1320/1488 nt) | nusA | transcription termination/antitermination L factor |
| ? | AP009048 | = 3316080 | 54 (1.110) | coding (1302/1488 nt) | nusA | transcription termination/antitermination L factor | |||||
| * | ? | AP009048 | 3325155 = | 81 (1.440) | 4 (0.080) | 3/90 | NT | 5.3% | coding (1636/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo |
| ? | AP009048 | 3325178 = | 71 (1.430) | coding (1613/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | AP009048 | = 3325160 | 81 (1.440) | 6 (0.120) | 4/90 | NT | 7.8% | coding (1631/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo |
| ? | AP009048 | = 3325171 | 71 (1.430) | coding (1620/1935 nt) | ftsH | protease, ATP‑dependent zinc‑metallo | |||||
| * | ? | AP009048 | = 3332647 | 29 (0.520) | 3 (0.060) | 3/88 | NT | 10.2% | intergenic (‑57/+70) | yhbE/rpmA | conserved inner membrane protein/50S ribosomal subunit protein L27 |
| ? | AP009048 | = 3332659 | 28 (0.580) | intergenic (‑69/+58) | yhbE/rpmA | conserved inner membrane protein/50S ribosomal subunit protein L27 | |||||
| * | ? | AP009048 | 3340916 = | 74 (1.320) | 4 (0.080) | 3/88 | NT | 6.2% | coding (787/978 nt) | yrbG | predicted calcium/sodium:proton antiporter |
| ? | AP009048 | 3340944 = | 58 (1.190) | coding (815/978 nt) | yrbG | predicted calcium/sodium:proton antiporter | |||||
| * | ? | AP009048 | = 3354886 | 47 (0.840) | 3 (0.060) | 3/92 | NT | 6.0% | coding (400/4554 nt) | gltB | glutamate synthase, large subunit |
| ? | AP009048 | = 3354897 | 51 (1.000) | coding (411/4554 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | AP009048 | = 3468051 | NA (NA) | 3 (0.060) | 3/96 | NT | NA | intergenic (‑11/+183) | rrlB/gltT | 23S ribosomal RNA/tRNA‑Glu |
| ? | AP009048 | = 3468073 | NA (NA) | intergenic (‑33/+161) | rrlB/gltT | 23S ribosomal RNA/tRNA‑Glu | |||||
| * | ? | AP009048 | = 3568734 | 29 (0.520) | 3 (0.060) | 3/90 | NT | 10.4% | coding (1330/2037 nt) | yihQ | alpha‑glucosidase |
| ? | AP009048 | = 3568756 | 26 (0.520) | coding (1352/2037 nt) | yihQ | alpha‑glucosidase | |||||
| * | ? | AP009048 | 3599312 = | NA (NA) | 4 (0.080) | 4/92 | NT | NA | intergenic (‑150/+34) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala |
| ? | AP009048 | 3599345 = | NA (NA) | intergenic (‑183/+1) | rrlA/alaT | 23S ribosomal RNA/tRNA‑Ala | |||||
| * | ? | AP009048 | 3634827 = | 82 (1.460) | 4 (0.080) | 4/86 | NT | 6.7% | coding (429/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | AP009048 | 3634851 = | 43 (0.910) | coding (405/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
| * | ? | AP009048 | 3674466 = | 104 (1.850) | 5 (0.100) | 3/92 | NT | 5.8% | coding (1539/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| ? | AP009048 | 3674494 = | 69 (1.360) | coding (1511/2022 nt) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase | |||||
| * | ? | AP009048 | = 3676814 | 74 (1.320) | 4 (0.080) | 3/88 | NT | 5.4% | intergenic (+145/‑54) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C |
| ? | AP009048 | = 3676823 | 76 (1.570) | intergenic (+154/‑45) | yifO/ppiC | conserved hypothetical protein/peptidyl‑prolyl cis‑trans isomerase C | |||||
| * | ? | AP009048 | 3690776 = | NA (NA) | 4 (0.070) | 4/100 | NT | NA | noncoding (2202/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | AP009048 | 3690795 = | NA (NA) | noncoding (2183/2904 nt) | rrlC | 23S ribosomal RNA | |||||
| * | ? | AP009048 | = 3711929 | 79 (1.400) | 4 (0.080) | 3/94 | NT | 5.4% | coding (882/1890 nt) | gidA | glucose‑inhibited cell‑division protein |
| ? | AP009048 | = 3711950 | 68 (1.310) | coding (903/1890 nt) | gidA | glucose‑inhibited cell‑division protein | |||||
| * | ? | AP009048 | 3740267 = | 45 (0.800) | 3 (0.060) | 3/96 | NT | 5.6% | coding (196/1338 nt) | yieG | predicted inner membrane protein |
| ? | AP009048 | 3740297 = | 58 (1.100) | coding (226/1338 nt) | yieG | predicted inner membrane protein | |||||
| * | ? | AP009048 | 3748797 = | 2 (0.040) | 55 (0.980) | 41/102 | NT | 96.5% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | AP009048 | 4056220 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | AP009048 | = 3750590 | 0 (0.000) | 46 (0.890) | 34/94 | NT | 100% | intergenic (‑104/‑69) | tnaA/insH | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent/IS5 element protein |
| ? | AP009048 | 3751790 = | 0 (0.000) | intergenic (+151/+116) | insH/tnaC | IS5 element protein/tryptophanase leader peptide | |||||
| * | ? | AP009048 | 3836342 = | 79 (1.400) | 4 (0.080) | 3/92 | NT | 5.6% | coding (95/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| ? | AP009048 | 3836371 = | 64 (1.260) | coding (124/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
| * | ? | AP009048 | 3842122 = | 73 (1.300) | 6 (0.120) | 3/88 | NT | 10.0% | coding (1020/1074 nt) | rfaK | lipopolysaccharide core biosynthesis |
| ? | AP009048 | 3842147 = | 45 (0.930) | coding (1045/1074 nt) | rfaK | lipopolysaccharide core biosynthesis | |||||
| * | ? | AP009048 | 3847603 = | 60 (1.070) | 4 (0.080) | 3/96 | NT | 6.5% | intergenic (+14/‑261) | htrL/kbl | hypothetical protein/glycine C‑acetyltransferase |
| ? | AP009048 | 3847628 = | 58 (1.100) | intergenic (+39/‑236) | htrL/kbl | hypothetical protein/glycine C‑acetyltransferase | |||||
| * | ? | AP009048 | 3873992 = | 86 (1.530) | 4 (0.080) | 4/94 | NT | 5.2% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | AP009048 | 4016461 = | 66 (1.270) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
| * | ? | AP009048 | 3885565 = | 44 (0.780) | 5 (0.110) | 4/86 | NT | 11.0% | intergenic (+123/‑422) | aldB/yiaW | aldehyde dehydrogenase B/conserved inner membrane protein |
| ? | AP009048 | 3885605 = | 44 (0.930) | intergenic (+163/‑382) | aldB/yiaW | aldehyde dehydrogenase B/conserved inner membrane protein | |||||
| * | ? | AP009048 | 3985585 = | 80 (1.420) | 5 (0.100) | 5/90 | NT | 7.5% | coding (148/531 nt) | yhiF | predicted DNA‑binding ranscriptional regulator |
| ? | AP009048 | 3985606 = | 52 (1.050) | coding (127/531 nt) | yhiF | predicted DNA‑binding ranscriptional regulator | |||||
| * | ? | AP009048 | 4006292 = | 58 (1.030) | 3 (0.060) | 3/94 | NT | 5.9% | coding (336/1239 nt) | yhiL | hypothetical protein |
| ? | AP009048 | 4006323 = | 42 (0.810) | coding (367/1239 nt) | yhiL | hypothetical protein | |||||
| * | ? | AP009048 | = 4010764 | 52 (0.920) | 3 (0.060) | 3/92 | NT | 5.5% | coding (952/1068 nt) | yhiI | predicted HlyD family secretion protein |
| ? | AP009048 | = 4010797 | 57 (1.120) | coding (985/1068 nt) | yhiI | predicted HlyD family secretion protein | |||||
| * | ? | AP009048 | 4140905 = | 77 (1.370) | 6 (0.120) | 4/90 | NT | 8.7% | coding (64/168 nt) | yhfL | conserved secreted peptide |
| ? | AP009048 | 4140935 = | 58 (1.170) | coding (34/168 nt) | yhfL | conserved secreted peptide | |||||
| * | ? | AP009048 | = 4194825 | 65 (1.160) | 3 (0.060) | 3/92 | NT | 5.1% | coding (7/354 nt) | rplR | 50S ribosomal subunit protein L18 |
| ? | AP009048 | = 4194838 | 53 (1.040) | coding (20/354 nt) | rplR | 50S ribosomal subunit protein L18 | |||||
| * | ? | AP009048 | 4205005 = | 48 (0.850) | 3 (0.060) | 3/96 | NT | 6.1% | coding (205/1290 nt) | rsmB | 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent |
| ? | AP009048 | 4205036 = | 47 (0.890) | coding (174/1290 nt) | rsmB | 16S rRNA m5C967 methyltransferase, S‑adenosyl‑L‑methionine‑dependent | |||||
| * | ? | AP009048 | = 4281451 | 34 (0.600) | 4 (0.080) | 3/92 | NT | 10.9% | coding (393/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| ? | AP009048 | = 4281461 | 35 (0.690) | coding (403/465 nt) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing | |||||
| * | ? | AP009048 | = 4341777 | 57 (1.010) | 3 (0.060) | 3/90 | NT | 5.2% | intergenic (‑68/+69) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator |
| ? | AP009048 | = 4341787 | 59 (1.190) | intergenic (‑78/+59) | adiC/adiY | arginine:agmatin/DNA‑binding transcriptional activator | |||||
| * | ? | AP009048 | 4357240 = | 63 (1.120) | 5 (0.100) | 5/90 | NT | 8.5% | intergenic (+205/‑22) | yjdJ/yjdK | predicted acyltransferase with acyl‑CoA N‑acyltransferase domain/hypothetical protein |
| ? | AP009048 | 4357263 = | 52 (1.050) | coding (2/297 nt) | yjdK | hypothetical protein | |||||
| * | ? | AP009048 | 4434708 = | 51 (0.910) | 3 (0.060) | 3/90 | NT | 6.8% | coding (165/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter |
| ? | AP009048 | 4434730 = | 37 (0.750) | coding (187/1413 nt) | cycA | D‑alanine/D‑serine/glycine transporter | |||||
| * | ? | AP009048 | 4528143 = | 40 (0.710) | 3 (0.060) | 3/84 | NT | 8.3% | coding (632/1968 nt) | yjhG | predicted dehydratase |
| ? | AP009048 | 4528168 = | 33 (0.710) | coding (607/1968 nt) | yjhG | predicted dehydratase | |||||
| * | ? | AP009048 | 4547362 = | 25 (0.440) | 9 (0.190) | 9/84 | NT | 26.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | 4547676 = | 29 (0.630) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | = 4547370 | 28 (0.500) | 9 (0.190) | 8/84 | NT | 25.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | AP009048 | = 4547666 | 29 (0.630) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | AP009048 | = 4561104 | 69 (1.230) | 6 (0.120) | 4/92 | NT | 8.4% | intergenic (‑104/‑569) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein |
| ? | AP009048 | = 4561115 | 69 (1.360) | intergenic (‑115/‑558) | yjiC/yjiD | hypothetical protein/DNA replication/recombination/repair protein | |||||