mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,406 | C→T | 12.1% | N304N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,424 | G→A | 12.5% | V310V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,505 | C→G | 8.9% | A337A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,559 | C→A | 29.6% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,589 | T→C | 18.9% | N365N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,595 | C→G | 5.9% | T367T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 5.8% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 31.6% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,685 | T→C | 10.1% | T397T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,706 | C→T | 5.5% | N404N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,724 | A→G | 5.7% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,732 | A→C | 14.2% | N413T (AAC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,895 | G→C | 10.7% | T467T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,979 | G→A | 8.9% | V495V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,027 | T→A | 9.5% | T511T (ACT→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,105 | C→G | 10.1% | A537A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 13.9% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 16.4% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,195 | G→C | 12.7% | T567T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,234 | T→C | 8.2% | T580T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,285 | T→C | 17.4% | T597T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 15.8% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 26.8% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 30.1% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,372 | A→G | 10.6% | K626K (AAA→AAG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 28.4% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,489 | T→C | 15.2% | N665N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,495 | G→C | 16.7% | T667T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,579 | G→A | 29.7% | V695V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,624 | G→A | 13.6% | V710V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,627 | A→C | 11.9% | T711T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,672 | G→A | 11.6% | K726K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,705 | G→C | 13.5% | A737A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,752 | A→G | 8.2% | N753S (AAC→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,759 | T→C | 20.2% | T755T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 11.6% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 31.7% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,924 | G→A | 13.9% | V810V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,927 | A→C | 19.9% | T811T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,951 | C→G | 6.7% | T819T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 15.3% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 8.7% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 8.7% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 17.1% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,128 | T→C | 6.2% | D878D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,129 | G→A | 5.8% | A879T (GCC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 9.4% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 5.2% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,479 | G→A | 6.6% | V995V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,485 | C→T | 8.2% | T997T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,496 | T→C | 11.9% | I1001T (ATC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,524 | A→G | 9.4% | V1010V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 11.6% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 17.5% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 13.3% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 17.6% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 22.2% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,715 | C→A | 12.5% | T1074N (ACC→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,834 | T→C | 7.5% | L1114L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,869 | T→C | 8.1% | G1125G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,926 | C→T | 5.6% | G1144G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 198,802 | T→C | 5.8% | A1436A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,120 | T→C | 7.8% | D1542D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,871 | A→G | 10.2% | I1793V (ATC→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,915 | T→C | 9.1% | F1807F (TTT→TTC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,113 | T→C | 8.9% | N1873N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,164 | T→C | 15.3% | D1890D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,305 | A→G | 5.4% | E1937E (GAA→GAG) | PP_0168 → | putative surface adhesion protein |
| RA | 200,326 | C→G | 5.3% | A1944A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 200,962 | G→A | 6.1% | E2156E (GAG→GAA) | PP_0168 → | putative surface adhesion protein |
| RA | 200,965 | G→C | 5.9% | V2157V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,007 | T→C | 7.1% | G2171G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,859 | G→C | 12.7% | A2455A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,997 | T→C | 6.4% | T2501T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,457 | A→G | 6.4% | T2655A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 203,674 | T→C | 7.9% | D3060D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 204,224 | T→C | 8.3% | L3244L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 204,976 | G→C | 7.1% | V3494V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 204,988 | T→C | 5.5% | G3498G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 205,453 | A→G | 6.4% | E3653E (GAA→GAG) | PP_0168 → | putative surface adhesion protein |
| RA | 205,465 | G→A | 5.2% | P3657P (CCG→CCA) | PP_0168 → | putative surface adhesion protein |
| RA | 205,483 | G→A | 5.1% | Q3663Q (CAG→CAA) | PP_0168 → | putative surface adhesion protein |
| RA | 205,801 | C→G | 6.0% | V3769V (GTC→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 206,311 | G→C | 5.2% | V3939V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 210,337 | C→T | 6.2% | G5281G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,388 | G→A | 10.2% | K5298K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 210,721 | T→C | 6.9% | N5409N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 210,742 | C→T | 5.7% | A5416A (GCC→GCT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,781 | C→T | 5.4% | G5429G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 210,799 | T→C | 5.5% | D5435D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,542 | G→C | 6.1% | T6016T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 214,086 | A→C | 5.9% | D6531A (GAC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 215,383 | A→G | 9.0% | E6963E (GAA→GAG) | PP_0168 → | putative surface adhesion protein |
| RA | 215,413 | A→G | 8.0% | Q6973Q (CAA→CAG) | PP_0168 → | putative surface adhesion protein |
| RA | 216,949 | T→C | 6.3% | D7485D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 699,722 | A→G | 48.1% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 757,142 | T→C | 5.2% | F115F (TTT→TTC) | PP_0647 → | conserved membrane protein of unknown function |
| RA | 961,699 | A→T | 7.3% | L239Q (CTG→CAG) | selD ← | Selenide, water dikinase |
| JC | 1,044,759 | Δ21 bp | 64.1% | coding (467‑487/702 nt) | PP_0904 → | InaA protein |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,184,561 | A→T | 5.3% | intergenic (‑177/‑235) | mltF ← / → purL | membrane‑bound lytic murein transglycosylase F/Phosphoribosylformylglycinamidine synthase |
| RA | 1,184,568 | A→G | 6.2% | intergenic (‑184/‑228) | mltF ← / → purL | membrane‑bound lytic murein transglycosylase F/Phosphoribosylformylglycinamidine synthase |
| RA | 1,327,121 | C→T | 43.5% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,497:1 | +C | 88.3% | intergenic (+74/‑90) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | T→G | 88.3% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498:1 | +G | 11.7% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,526,571 | G→T | 6.6% | C253F (TGC→TTC) | ddlB → | D‑alanine‑‑D‑alanine ligase B |
| RA | 1,526,580 | T→A | 5.2% | I256N (ATT→AAT) | ddlB → | D‑alanine‑‑D‑alanine ligase B |
| RA | 1,530,160 | C→T | 100% | R395C (CGT→TGT) noncoding (49/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| RA | 1,530,173 | A→C | 7.1% | *399S (TAA→TCA) noncoding (62/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| JC | 1,780,067 | Δ62 bp | 17.1% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,844,166 | T→A | 87.9% | K210* (AAG→TAG) | gacS ← | Sensor protein GacS |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,087,422 | C→T | 6.9% | intergenic (+235/+683) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,428 | G→A | 7.9% | intergenic (+241/+677) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,297,015 | G→A | 8.9% | A1036V (GCG→GTG) | sbcC ← | Exonuclease SbcC |
| JC | 2,297,016 | Δ7 bp | 9.0% | coding (3100‑3106/3645 nt) | sbcC ← | Exonuclease SbcC |
| RA | 2,297,027 | Δ1 bp | 8.8% | coding (3095/3645 nt) | sbcC ← | Exonuclease SbcC |
| RA | 2,297,028 | Δ1 bp | 8.8% | coding (3094/3645 nt) | sbcC ← | Exonuclease SbcC |
| RA | 2,297,030 | T→A | 8.8% | Q1031L (CAG→CTG) ‡ | sbcC ← | Exonuclease SbcC |
| RA | 2,297,031 | G→C | 9.1% | Q1031E (CAG→GAG) ‡ | sbcC ← | Exonuclease SbcC |
| RA | 2,297,032 | G→C | 9.3% | R1030R (CGC→CGG) ‡ | sbcC ← | Exonuclease SbcC |
| RA | 2,297,033 | C→A | 9.3% | R1030L (CGC→CTC) ‡ | sbcC ← | Exonuclease SbcC |
| RA | 2,414,854 | Δ1 bp | 9.3% | coding (52/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,414,855 | Δ1 bp | 9.3% | coding (53/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,414,856 | Δ1 bp | 9.3% | coding (54/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,414,857 | Δ1 bp | 9.3% | coding (55/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,414,858 | Δ1 bp | 9.3% | coding (56/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,414,859 | Δ1 bp | 9.3% | coding (57/198 nt) | PP_2115 → | conserved protein of unknown function |
| RA | 2,550,125 | G→A | 48.1% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 2,564,427 | C→T | 9.1% | Q176* (CAA→TAA) | PP_2248 → | putative transporter |
| RA | 3,142,272 | C→T | 73.7% | A74V (GCG→GTG) | PP_2758 → | putative Ribose ABC transporter, periplasmic ribose‑binding protein |
| JC | 3,718,088 | Δ28 bp | 6.2% | coding (478‑505/792 nt) | paaG ← | 1,2‑epoxyphenylacetyl‑CoA isomerase |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,348,705 | A→G | 56.0% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,705,424 | A→G | 12.5% | intergenic (‑162/+15) | kdpF ← / ← PP_4162 | potassium‑transporting ATPase F/conserved membrane protein of unknown function |
| RA | 4,705,425 | G→A | 12.5% | intergenic (‑163/+14) | kdpF ← / ← PP_4162 | potassium‑transporting ATPase F/conserved membrane protein of unknown function |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,228:1 | +C | 12.7% | intergenic (+465/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 87.3% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,230 | A→G | 12.7% | intergenic (+467/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,231 | C→G | 85.4% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,232 | C→T | 14.6% | intergenic (+469/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,234 | C→T | 85.5% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,235 | C→T | 14.5% | intergenic (+472/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,236 | G→T | 81.8% | intergenic (+473/+280) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,237 | C→G | 81.8% | intergenic (+474/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,238 | C→G | 18.2% | intergenic (+475/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,239 | A→G | 81.8% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,240 | A→C | 18.2% | intergenic (+477/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,241 | C→T | 18.2% | intergenic (+478/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,243 | G→T | 81.8% | intergenic (+480/+273) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,244 | C→G | 81.8% | intergenic (+481/+272) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 81.8% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,808,175 | Δ14 bp | 100% | intergenic (‑284/‑258) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| JC | 4,808,177 | Δ103 bp | 78.9% | intergenic (‑286/‑167) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,950,972 | T→G | 5.5% | intergenic (‑122/+35) | fliL ← / ← fliK | Flagellar protein FliL/Flagellar hook‑length control protein FliK |
| RA | 4,964,454 | C→T | 100% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| JC | 5,201,568 | Δ98 bp | 39.5% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,680,584 | C→G | 5.1% | L214V (CTT→GTT) ‡ | rsmE → | 16S rRNA m3U1498 methyltransferase |
| RA | 5,680,585 | T→C | 5.1% | L214P (CTT→CCT) ‡ | rsmE → | 16S rRNA m3U1498 methyltransferase |
| RA | 5,680,586 | T→G | 5.1% | L214L (CTT→CTG) ‡ | rsmE → | 16S rRNA m3U1498 methyltransferase |
| RA | 5,680,593 | C→G | 5.6% | R217G (CGC→GGC) | rsmE → | 16S rRNA m3U1498 methyltransferase |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,988,760 | C→G | 10.9% | intergenic (+54/‑492) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,763 | C→G | 12.1% | intergenic (+57/‑489) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,809 | G→A | 37.1% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,819 | T→C | 34.5% | intergenic (+113/‑433) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| RA | 6,132,525 | T→C | 17.8% | E443G (GAG→GGG) | copA‑II ← | copper resistance protein A |
| RA | 6,132,542 | A→G | 13.6% | D437D (GAT→GAC) | copA‑II ← | copper resistance protein A |
| RA | 6,132,601 | T→C | 12.8% | T418A (ACC→GCC) | copA‑II ← | copper resistance protein A |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486287 | 486469 | 183 | 24 [22] | [22] 24 | [apaG] | [apaG] |
| * | * | ÷ | AE015451 | 1367504 | 1367925 | 422 | 24 [23] | [22] 24 | [PP_1193] | [PP_1193] |
| * | * | ÷ | AE015451 | 1421685 | 1422109 | 425 | 25 [23] | [22] 24 | PP_1246 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 1544243 | 1544494 | 252 | 24 [23] | [20] 30 | [mdfA] | [mdfA] |
| * | * | ÷ | AE015451 | 1691005 | 1691303 | 299 | 26 [21] | [23] 24 | [PP_1487] | [PP_1487] |
| * | * | ÷ | AE015451 | 2027364 | 2027642 | 279 | 25 [23] | [23] 25 | wbpL | Glycosyl transferase WbpL |
| * | * | ÷ | AE015451 | 2038136 | 2038427 | 292 | 24 [22] | [23] 27 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2039490 | 2039724 | 235 | 24 [23] | [23] 24 | [PP_1812] | [PP_1812] |
| * | * | ÷ | AE015451 | 2142275 | 2142563 | 289 | 25 [23] | [22] 24 | [PP_1897]–[PP_1898] | [PP_1897],[PP_1898] |
| * | * | ÷ | AE015451 | 2478320 | 2478504 | 185 | 27 [20] | [21] 24 | PP_2172 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 3287009 | 3287369 | 361 | 24 [23] | [23] 24 | [PP_2889]–[xthA] | [PP_2889],[xthA] |
| * | * | ÷ | AE015451 | 3579904 | 3580166 | 263 | 26 [23] | [23] 24 | benR | BenABC operon transcriptional activator |
| * | * | ÷ | AE015451 | 3985549 | 3985759 | 211 | 24 [22] | [23] 25 | [PP_3513]–[oplB] | [PP_3513],[oplB] |
| * | * | ÷ | AE015451 | 4839178 | 4839425 | 248 | 24 [23] | [23] 24 | [ccoP‑I]–[PP_4254] | [ccoP‑I],[PP_4254] |
| * | * | ÷ | AE015451 | 5660087 | 5660696 | 610 | 24 [23] | [23] 24 | [metK]–[ligB] | [metK],[ligB] |
| * | * | ÷ | AE015451 | 5696575 | 5696753 | 179 | 25 [18] | [23] 24 | pyrC'/hslV | dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease |
| * | * | ÷ | AE015451 | 5816895 | 5817231 | 337 | 29 [23] | [21] 24 | [pilT] | [pilT] |
| * | * | ÷ | AE015451 | 5835129 | 5835398 | 270 | 24 [23] | [23] 24 | [PP_5113]–[PP_5114] | [PP_5113],[PP_5114] |
| * | * | ÷ | AE015451 | 5858236 | 5858602 | 367 | 24 [23] | [23] 25 | PP_5134 | conserved protein of unknown function |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 222190 | 49 (0.690) | 5 (0.070) | 5/328 | NT | 8.6% | coding (45/1020 nt) | PP_0170 | ABC transporter, periplasmic binding protein |
| ? | AE015451 | = 222229 | 60 (0.900) | coding (84/1020 nt) | PP_0170 | ABC transporter, periplasmic binding protein | |||||
| * | ? | AE015451 | = 313870 | 92 (1.290) | 6 (0.090) | 5/310 | NT | 7.6% | intergenic (+43/+8) | ygaU/yrfG | regulator of murein cross‑linking/purine nucleotidase |
| ? | AE015451 | = 313850 | 65 (1.030) | intergenic (+23/+28) | ygaU/yrfG | regulator of murein cross‑linking/purine nucleotidase | |||||
| * | ? | AE015451 | 388714 = | 51 (0.710) | 7 (0.100) | 7/334 | NT | 12.7% | coding (585/1251 nt) | soxB | sarcosine oxidase subunit beta |
| ? | AE015451 | 388731 = | 48 (0.700) | coding (602/1251 nt) | soxB | sarcosine oxidase subunit beta | |||||
| * | ? | AE015451 | 449163 = | 50 (0.700) | 3 (0.040) | 3/330 | NT | 6.0% | coding (334/1779 nt) | PP_0370 | Acyl‑CoA dehydrogenase family protein |
| ? | AE015451 | 449358 = | 47 (0.700) | coding (529/1779 nt) | PP_0370 | Acyl‑CoA dehydrogenase family protein | |||||
| * | ? | AE015451 | 495066 = | 78 (1.090) | 8 (0.120) | 7/328 | NT | 9.7% | coding (968/999 nt) | PP_0408 | conserved exported protein of unknown function |
| ? | AE015451 | 495094 = | 76 (1.140) | coding (940/999 nt) | PP_0408 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 15 (0.220) | 11/336 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | 682075 = | 56 (0.780) | 5 (0.080) | 5/322 | NT | 9.4% | coding (1198/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 682089 = | 45 (0.690) | coding (1184/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | = 981334 | 101 (1.410) | 8 (0.120) | 7/330 | NT | 7.9% | coding (211/1863 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| ? | AE015451 | = 981392 | 91 (1.350) | coding (269/1863 nt) | hscA | DnaK‑like molecular chaperone specific for IscU | |||||
| * | ? | AE015451 | = 1031127 | 104 (1.460) | 6 (0.090) | 6/332 | NT | 5.7% | coding (1185/1353 nt) | PP_0887 | Sensor histidine kinase |
| ? | AE015451 | = 1031160 | 99 (1.460) | coding (1218/1353 nt) | PP_0887 | Sensor histidine kinase | |||||
| * | ? | AE015451 | 1042953 = | 69 (0.970) | 4 (0.060) | 4/330 | NT | 6.0% | coding (763/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
| ? | AE015451 | 1043012 = | 61 (0.910) | coding (822/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase | |||||
| * | ? | AE015451 | = 1187295 | 70 (0.980) | 7 (0.100) | 6/328 | NT | 8.6% | coding (2500/3900 nt) | purL | Phosphoribosylformylglycinamidine synthase |
| ? | AE015451 | = 1187344 | 83 (1.240) | coding (2549/3900 nt) | purL | Phosphoribosylformylglycinamidine synthase | |||||
| * | ? | AE015451 | 1737987 = | 81 (1.130) | 11 (0.170) | 10/316 | NT | 12.8% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 77 (1.200) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | 1870524 = | 69 (0.970) | 4 (0.060) | 4/332 | NT | 6.0% | coding (714/924 nt) | cobD | Subunit of adenosylcobinamide‑phosphate synthase beta component |
| ? | AE015451 | 1870585 = | 60 (0.890) | coding (775/924 nt) | cobD | Subunit of adenosylcobinamide‑phosphate synthase beta component | |||||
| * | ? | AE015451 | = 1892525 | 76 (1.060) | 6 (0.090) | 5/330 | NT | 7.5% | intergenic (+35/‑60) | PP_1697/PP_1698 | transcriptional regulator, GntR family/Major facilitator family transporter |
| ? | AE015451 | = 1892529 | 76 (1.130) | intergenic (+39/‑56) | PP_1697/PP_1698 | transcriptional regulator, GntR family/Major facilitator family transporter | |||||
| * | ? | AE015451 | 1920720 = | 41 (0.570) | 3 (0.040) | 3/336 | NT | 7.9% | coding (158/963 nt) | PP_1720 | Alcohol dehydrogenase, zinc‑containing |
| ? | AE015451 | 1920741 = | 31 (0.450) | coding (179/963 nt) | PP_1720 | Alcohol dehydrogenase, zinc‑containing | |||||
| * | ? | AE015451 | = 2055637 | 46 (0.640) | 4 (0.060) | 4/332 | NT | 6.5% | coding (778/1092 nt) | aroC | Chorismate synthase |
| ? | AE015451 | = 2055929 | 71 (1.050) | coding (1070/1092 nt) | aroC | Chorismate synthase | |||||
| * | ? | AE015451 | 2084102 = | 51 (0.710) | 6 (0.090) | 6/332 | NT | 11.1% | intergenic (+6/+23) | PP_1862/PP_1863 | conserved membrane protein of unknown function/Transcriptional regulator, LysR family |
| ? | AE015451 | 2084123 = | 48 (0.710) | intergenic (+27/+2) | PP_1862/PP_1863 | conserved membrane protein of unknown function/Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | 2120561 = | 45 (0.630) | 3 (0.040) | 3/336 | NT | 6.6% | coding (1712/2355 nt) | PP_1885 | conserved protein of unknown function |
| ? | AE015451 | 2120579 = | 42 (0.610) | coding (1730/2355 nt) | PP_1885 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 2130415 = | 86 (1.200) | 4 (0.060) | 3/332 | NT | 5.1% | coding (1784/2496 nt) | fimD | Type 1 pili subunit FimD |
| ? | AE015451 | 2130513 = | 68 (1.000) | coding (1686/2496 nt) | fimD | Type 1 pili subunit FimD | |||||
| * | ? | AE015451 | = 2183822 | 74 (1.040) | 5 (0.070) | 5/328 | NT | 6.6% | intergenic (+53/‑121) | PP_5489/PP_5490 | conserved protein of unknown function/site‑specific DNA recombinase |
| ? | AE015451 | = 2183830 | 72 (1.080) | intergenic (+61/‑113) | PP_5489/PP_5490 | conserved protein of unknown function/site‑specific DNA recombinase | |||||
| * | ? | AE015451 | = 2250804 | 76 (1.060) | 7 (0.110) | 7/314 | NT | 9.5% | coding (135/1434 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | AE015451 | = 2250786 | 65 (1.020) | coding (117/1434 nt) | leuC | 3‑isopropylmalate dehydratase large subunit | |||||
| * | ? | AE015451 | = 2256209 | 52 (0.730) | 5 (0.070) | 4/330 | NT | 11.1% | intergenic (+269/‑435) | asd/PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| ? | AE015451 | 2258136 = | 31 (0.460) | intergenic (+191/‑201) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
| * | ? | AE015451 | 2378115 = | 44 (0.620) | 4 (0.060) | 4/334 | NT | 8.8% | coding (756/999 nt) | cmaX | CmaX protein |
| ? | AE015451 | 2378156 = | 41 (0.600) | coding (797/999 nt) | cmaX | CmaX protein | |||||
| * | ? | AE015451 | = 2410329 | 79 (1.110) | 5 (0.070) | 5/328 | NT | 6.2% | coding (1119/2742 nt) | acnA‑I | aconitate hydratase 1 |
| ? | AE015451 | = 2410381 | 77 (1.150) | coding (1067/2742 nt) | acnA‑I | aconitate hydratase 1 | |||||
| * | ? | AE015451 | = 2412887 | 54 (0.760) | 10 (0.150) | 7/330 | NT | 19.1% | intergenic (+151/‑270) | rlmM/PP_2114 | Ribosomal RNA large subunit methyltransferase M/transposase |
| ? | AE015451 | 2414813 = | 34 (0.510) | coding (11/198 nt) | PP_2115 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 2472115 | 56 (0.780) | 16 (0.230) | 14/336 | NT | 26.1% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 37 (0.540) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | = 2528999 | 56 (0.780) | 3 (0.040) | 3/330 | NT | 6.8% | intergenic (+126/‑281) | PP_2217/PP_2218 | enoyl‑CoA hydratase/transposase |
| ? | AE015451 | = 4022307 | 30 (0.450) | intergenic (‑2/+666) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 2824258 | 58 (0.810) | 5 (0.070) | 5/334 | NT | 8.2% | coding (334/462 nt) | iorA‑I | isoquinoline 1‑oxidoreductase subunit alpha |
| ? | AE015451 | = 2824259 | 57 (0.840) | coding (335/462 nt) | iorA‑I | isoquinoline 1‑oxidoreductase subunit alpha | |||||
| * | ? | AE015451 | 2827964 = | 62 (0.870) | 5 (0.070) | 5/332 | NT | 8.9% | coding (140/1209 nt) | PP_2480 | putative Xanthine dehydrogenase accessory factor |
| ? | AE015451 | 2828049 = | 44 (0.650) | coding (225/1209 nt) | PP_2480 | putative Xanthine dehydrogenase accessory factor | |||||
| * | ? | AE015451 | 2986915 = | NA (NA) | 5 (0.070) | 4/334 | NT | 10.4% | coding (1484/2991 nt) | PP_2612 | conserved membrane protein of unknown function |
| ? | AE015451 | 2986959 = | 45 (0.630) | coding (1440/2991 nt) | PP_2612 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 3026480 | 27 (0.380) | 49 (0.690) | 36/346 | NT | 71.2% | coding (156/1800 nt) | PP_2641 | Iron‑sulfur cluster‑binding protein |
| ? | AE015451 | 3149709 = | 13 (0.180) | coding (916/1092 nt) | PP_2765 | putative Sulfonate monooxygenase MsuD | |||||
| * | ? | AE015451 | 3283418 = | 58 (0.810) | 4 (0.060) | 4/336 | NT | 7.1% | coding (807/1230 nt) | PP_2885 | putative Transporter |
| ? | AE015451 | 3283442 = | 49 (0.720) | coding (783/1230 nt) | PP_2885 | putative Transporter | |||||
| * | ? | AE015451 | = 3292785 | 34 (0.480) | 3 (0.040) | 3/330 | NT | 7.3% | coding (2069/3675 nt) | PP_2893 | conserved exported protein of unknown function |
| ? | AE015451 | = 3293168 | 44 (0.650) | coding (2452/3675 nt) | PP_2893 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 3409687 = | 67 (0.940) | 4 (0.060) | 4/322 | NT | 5.9% | intergenic (‑253/‑283) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
| ? | AE015451 | 3409701 = | 66 (1.010) | intergenic (‑267/‑269) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function | |||||
| * | ? | AE015451 | 3409928 = | 55 (0.770) | 6 (0.090) | 6/340 | NT | 8.3% | intergenic (‑494/‑42) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
| ? | AE015451 | = 3450711 | 80 (1.150) | intergenic (‑125/+258) | PP_5558/PP_3069 | putative transcriptional xre family of phage origin/Outer membrane autotransporter | |||||
| * | ? | AE015451 | 3475322 = | 43 (0.600) | 4 (0.060) | 4/332 | NT | 8.9% | coding (1391/2517 nt) | PP_3087 | putative excinuclease ABC subunit A |
| ? | AE015451 | 3475368 = | 41 (0.610) | coding (1345/2517 nt) | PP_3087 | putative excinuclease ABC subunit A | |||||
| * | ? | AE015451 | = 3561096 | 57 (0.800) | 4 (0.060) | 4/334 | NT | 6.9% | coding (851/1377 nt) | tdcG‑III | L‑serine dehydratase |
| ? | AE015451 | = 3561107 | 54 (0.790) | coding (862/1377 nt) | tdcG‑III | L‑serine dehydratase | |||||
| * | ? | AE015451 | 3875611 = | 73 (1.020) | 4 (0.060) | 4/332 | NT | 5.9% | coding (103/1212 nt) | xcpS | Type II secretion pathway protein XcpS |
| ? | AE015451 | 3875688 = | 58 (0.860) | coding (180/1212 nt) | xcpS | Type II secretion pathway protein XcpS | |||||
| * | ? | AE015451 | = 4022305 | 32 (0.450) | 5 (0.070) | 5/330 | NT | 10.4% | coding (1/942 nt) | PP_3547 | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | AE015451 | 4022806 = | 56 (0.830) | intergenic (‑501/+167) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4022317 | 32 (0.450) | 10 (0.150) | 10/330 | NT | 18.3% | intergenic (‑12/+656) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | 4022818 = | 59 (0.880) | intergenic (‑513/+155) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4022445 | 47 (0.660) | 4 (0.060) | 4/330 | NT | 8.9% | intergenic (‑140/+528) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | 4022664 = | 38 (0.560) | intergenic (‑359/+309) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4051375 | 63 (0.880) | 4 (0.060) | 4/334 | NT | 6.0% | coding (1080/1176 nt) | PP_3571 | putative Acetylornithine deacetylase |
| ? | AE015451 | = 4051384 | 65 (0.950) | coding (1071/1176 nt) | PP_3571 | putative Acetylornithine deacetylase | |||||
| * | ? | AE015451 | = 4192478 | 104 (1.460) | 5 (0.080) | 5/310 | NT | 5.3% | intergenic (+84/‑565) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | = 4192458 | 88 (1.390) | intergenic (+64/‑585) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | = 4282722 | 46 (0.640) | 5 (0.070) | 4/332 | NT | 9.9% | coding (508/1089 nt) | PP_3753 | Transcriptional regulator, AraC family |
| ? | AE015451 | = 4282759 | 47 (0.690) | coding (471/1089 nt) | PP_3753 | Transcriptional regulator, AraC family | |||||
| * | ? | AE015451 | 4417589 = | 100 (1.400) | 8 (0.120) | 7/322 | NT | 8.0% | coding (482/552 nt) | PP_3905 | Transcriptional regulator, LuxR family |
| ? | AE015451 | 4417603 = | 93 (1.420) | coding (496/552 nt) | PP_3905 | Transcriptional regulator, LuxR family | |||||
| * | ? | AE015451 | 4418726 = | 85 (1.190) | 8 (0.120) | 7/326 | NT | 9.0% | coding (242/351 nt) | PP_3908 | conserved protein of unknown function |
| ? | AE015451 | 4418770 = | 82 (1.230) | coding (286/351 nt) | PP_3908 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 4647493 | 77 (1.080) | 5 (0.070) | 5/332 | NT | 7.3% | coding (2058/2112 nt) | fusB | Elongation factor G 2 |
| ? | AE015451 | = 4647758 | 54 (0.800) | coding (1381/1461 nt) | PP_4112 | Sulphate transporter | |||||
| * | ? | AE015451 | = 4711816 | 62 (0.870) | 4 (0.060) | 4/334 | NT | 6.1% | coding (48/2115 nt) | PP_4171 | conserved exported protein of unknown function |
| ? | AE015451 | = 4711822 | 63 (0.920) | coding (54/2115 nt) | PP_4171 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 4792906 | 76 (1.060) | 4 (0.060) | 4/332 | NT | 5.4% | coding (934/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) |
| ? | AE015451 | = 4792930 | 69 (1.020) | coding (910/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) | |||||
| * | ? | AE015451 | = 4802287 | 55 (0.770) | 3 (0.040) | 3/336 | NT | 5.4% | coding (59/567 nt) | PP_4230 | conserved exported protein of unknown function |
| ? | AE015451 | = 4802291 | 53 (0.770) | coding (55/567 nt) | PP_4230 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 4808174 = | 0 (0.000) | 13 (0.230) | 9/280 | NT | 52.0% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 24 (0.420) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808179 | 0 (0.000) | 29 (0.440) | 18/326 | NT | 53.2% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5988765 = | 51 (0.770) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4908036 | 54 (0.760) | 5 (0.070) | 5/330 | NT | 7.9% | intergenic (‑12/‑270) | PP_4317/PP_4318 | conserved protein of unknown function/transposase |
| ? | AE015451 | 4909961 = | 66 (0.980) | intergenic (+354/+125) | PP_4318/PP_4319 | transposase/conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 4913709 = | 53 (0.740) | 5 (0.070) | 5/330 | NT | 9.8% | coding (990/1989 nt) | ccmF | holocytochrome c synthetase |
| ? | AE015451 | 4913769 = | 42 (0.620) | coding (930/1989 nt) | ccmF | holocytochrome c synthetase | |||||
| * | ? | AE015451 | = 4945197 | 70 (0.980) | 10 (0.150) | 9/336 | NT | 14.8% | intergenic (+557/+241) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945389 = | 48 (0.700) | intergenic (+749/+49) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945203 | 71 (0.990) | 6 (0.090) | 6/332 | NT | 8.9% | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945621 = | 56 (0.830) | coding (960/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945209 | 71 (0.990) | 16 (0.240) | 16/332 | NT | 21.9% | intergenic (+569/+229) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945455 = | 47 (0.690) | coding (1126/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | 5128868 = | 84 (1.180) | 5 (0.070) | 5/342 | NT | 5.8% | coding (237/438 nt) | PP_4515 | Transcriptional regulator, MarR family |
| ? | AE015451 | 5128906 = | 79 (1.130) | coding (199/438 nt) | PP_4515 | Transcriptional regulator, MarR family | |||||
| * | ? | AE015451 | 5334991 = | 61 (0.850) | 7 (0.100) | 7/332 | NT | 11.2% | coding (1421/2976 nt) | PP_4695 | Sensory box histidine kinase |
| ? | AE015451 | 5335018 = | 53 (0.780) | coding (1448/2976 nt) | PP_4695 | Sensory box histidine kinase | |||||
| * | ? | AE015451 | 5365051 = | 88 (1.230) | 6 (0.090) | 6/334 | NT | 7.2% | coding (1505/1914 nt) | ftsH | integral membrane ATP‑dependent zinc metallopeptidase |
| ? | AE015451 | 5365082 = | 71 (1.040) | coding (1474/1914 nt) | ftsH | integral membrane ATP‑dependent zinc metallopeptidase | |||||
| * | ? | AE015451 | = 5384862 | 81 (1.130) | 6 (0.090) | 6/326 | NT | 7.5% | coding (1326/1671 nt) | lldP | L‑lactate permease |
| ? | AE015451 | = 5384850 | 73 (1.100) | coding (1314/1671 nt) | lldP | L‑lactate permease | |||||
| * | ? | AE015451 | 5405602 = | 68 (0.950) | 7 (0.100) | 7/342 | NT | 8.7% | coding (368/660 nt) | PP_4749 | Amino acid ABC transporter, permease protein |
| ? | AE015451 | 5405634 = | 80 (1.150) | coding (336/660 nt) | PP_4749 | Amino acid ABC transporter, permease protein | |||||
| * | ? | AE015451 | = 5408009 | 56 (0.780) | 4 (0.060) | 4/334 | NT | 6.5% | coding (729/1308 nt) | PP_4752 | putative Xaa‑Pro aminopeptidase |
| ? | AE015451 | = 5408044 | 61 (0.900) | coding (694/1308 nt) | PP_4752 | putative Xaa‑Pro aminopeptidase | |||||
| * | ? | AE015451 | = 5509910 | 60 (0.840) | 6 (0.090) | 6/310 | NT | 10.4% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
| ? | AE015451 | = 5509890 | 50 (0.790) | coding (89/1488 nt) | urtB | putative Urea ABC transporter | |||||
| * | ? | AE015451 | = 5545081 | 80 (1.120) | 17 (0.240) | 4/346 | NT | 17.7% | intergenic (‑221/+656) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB |
| ? | AE015451 | 5545321 = | NA (NA) | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB | |||||
| * | ? | AE015451 | 5545321 = | NA (NA) | 88 (1.250) | 57/346 | NT | 84.0% | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB |
| ? | AE015451 | = 5621245 | 17 (0.240) | coding (19/774 nt) | PP_4939 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5545666 | NA (NA) | 65 (0.930) | 54/344 | NT | 79.6% | intergenic (‑806/+71) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB |
| ? | AE015451 | 5621244 = | 17 (0.240) | coding (20/774 nt) | PP_4939 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 5575228 = | 69 (0.970) | 5 (0.080) | 5/322 | NT | 7.2% | coding (66/1041 nt) | motB | Flagellar motor rotation protein |
| ? | AE015451 | 5575242 = | 66 (1.010) | coding (52/1041 nt) | motB | Flagellar motor rotation protein | |||||
| * | ? | AE015451 | = 5685899 | 42 (0.590) | 4 (0.060) | 4/330 | NT | 8.8% | coding (994/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| ? | AE015451 | = 5685911 | 43 (0.640) | coding (982/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
| * | ? | AE015451 | = 5822903 | 77 (1.080) | 5 (0.080) | 5/326 | NT | 6.5% | coding (432/597 nt) | rdgB | dITP/XTP pyrophosphatase |
| ? | AE015451 | = 5823021 | 73 (1.100) | coding (550/597 nt) | rdgB | dITP/XTP pyrophosphatase | |||||
| * | ? | AE015451 | = 5988668 | 61 (0.850) | 13 (0.190) | 13/336 | NT | 22.9% | coding (1750/1788 nt) | kefB‑III | glutathione‑regulated potassium/H+ antiporter |
| ? | AE015451 | 5988956 = | 29 (0.420) | intergenic (+250/‑296) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988757 | 52 (0.730) | 16 (0.230) | 13/334 | NT | 29.2% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988979 = | 28 (0.410) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988771 | 51 (0.710) | 27 (0.400) | 19/334 | NT | 40.7% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 30 (0.440) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | 6029225 = | 96 (1.340) | 7 (0.110) | 7/324 | NT | 7.7% | coding (236/1494 nt) | kauB | 4‑guanidinobutyraldehyde dehydrogenase |
| ? | AE015451 | 6029308 = | 78 (1.180) | coding (153/1494 nt) | kauB | 4‑guanidinobutyraldehyde dehydrogenase | |||||
| * | ? | AE015451 | 6071413 = | 91 (1.270) | 5 (0.070) | 4/330 | NT | 5.6% | coding (165/771 nt) | phoU | phosphate transport‑associated protein |
| ? | AE015451 | 6071506 = | 82 (1.220) | coding (72/771 nt) | phoU | phosphate transport‑associated protein | |||||
| * | ? | AE015451 | = 6138053 | 80 (1.120) | 6 (0.090) | 6/338 | NT | 7.0% | coding (508/1254 nt) | czcC | metal RND efflux outer membrane protein, CzcC family |
| ? | AE015451 | = 6138068 | 81 (1.180) | coding (523/1254 nt) | czcC | metal RND efflux outer membrane protein, CzcC family | |||||