mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | AM260479 | 160,041 | G→C | G102A (GGG→GCG) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,043 | G→C | V103L (GTA→CTA) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 160,050 | +C | coding (314/939 nt) | h16_A0146 → | conserved hypothetical protein |
| RA | AM260479 | 208,932 | A→C | H322Q (CAT→CAG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 208,953 | A→C | V315V (GTT→GTG) | h16_A0195 ← | Putative GTPase (G3E family) |
| RA | AM260479 | 245,288 | T→G | L247V (TTG→GTG) | betA2 → | choline dehydrogenase |
| RA | AM260479 | 275,969 | +C | coding (268/558 nt) | h16_A0264 ← | Hypothetical protein |
| RA | AM260479 | 342,407 | T→C | L180L (TTG→CTG) | amtB → | ammonium transporter |
| RA | AM260479 | 406,488 | G→T | L70I (CTC→ATC) | h16_A0388 ← | ABC‑type transporter, ATPase component: HAAT family |
| RA | AM260479 | 452,997 | Δ1 bp | intergenic (‑22/+116) | h16_A0432 ← / ← coxF | Uncharacterized MobA‑related protein/xanthine and CO dehydrogenase, maturation factor |
| RA | AM260479 | 500,512 | G→A | W23* (TGG→TAG) | h16_A0473 → | ABC‑type transporter, permease component: PAAT family |
| RA | AM260479 | 518,612 | G→C | intergenic (+17/‑48) | h16_A0492 → / → pgam2 | Phospholipid‑binding protein/phosphoglycerate mutase 2 protein |
| RA | AM260479 | 547,818 | +C | intergenic (‑10/+27) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,839 | Δ1 bp | intergenic (‑31/+6) | glyS ← / ← h16_A0522 | Glycyl‑tRNA synthetase beta subunit/conserved hypothetical protein |
| RA | AM260479 | 547,879 | 2 bp→GA | coding (595‑596/630 nt) | h16_A0522 ← | conserved hypothetical protein |
| RA | AM260479 | 561,006 | +G | intergenic (+9/+38) | h16_A0532 → / ← h16_A0533 | conserved hypothetical protein/universal stress protein, UspA family |
| RA | AM260479 | 564,366 | C→G | P73A (CCC→GCC) | h16_A0537 → | Uncharacterized protein conserved in bacteria |
| RA | AM260479 | 581,821 | +C | coding (117/1734 nt) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,589 | T→G | H295Q (CAT→CAG) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 582,759 | G→T | C352F (TGT→TTT) | h16_A0555 → | zinc metalloprotease |
| RA | AM260479 | 619,859 | G→T | H108N (CAC→AAC) | acrA1 ← | Cation/multidrug efflux system, mebrane‑fusion component |
| RA | AM260479 | 628,642 | Δ1 bp | coding (756/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 628,654 | +C | coding (744/1206 nt) | h16_A0595 ← | Uncharacterized Fe‑S protein |
| RA | AM260479 | 637,111 | +G | intergenic (‑164/+218) | adk ← / ← kdsB | adenylate kinase/3‑Deoxy‑manno‑octulosonate cytidylyltransferase |
| RA | AM260479 | 724,768 | +C | coding (82/669 nt) | lysE → | lysine efflux permease |
| RA | AM260479 | 735,524 | +G | intergenic (‑409/+175) | h16_A0685 ← / ← h16_A0686 | hypothetical membrane spanning protein/Predictedpermease/CBS‑domain‑containing membrane protein |
| RA | AM260479 | 782,330 | +G | intergenic (‑680/‑42) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 782,333 | +A | intergenic (‑683/‑39) | h16_A0723 ← / → h16_A0724 | hypothetical membrane protein/hypothetical membrane protein |
| RA | AM260479 | 787,769 | +T | intergenic (‑549/+743) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 787,882 | +T | intergenic (‑662/+630) | h16_A0728 ← / ← h16_A0729 | response regulator containing CheY‑like receiver, AAA‑type ATPase, and DNA‑binding domains/transcriptional regulator, LysR‑family |
| RA | AM260479 | 916,512 | T→C | V341A (GTG→GCG) | h16_A0836 → | predicted exporter of the RND superfamily |
| MC JC | AM260479 | 973,838 | Δ1,320 bp | [h16_A0881]–h16_A0882 | [h16_A0881], h16_A0882 | |
| RA | AM260479 | 1,042,407 | T→G | K131N (AAA→AAC) | h16_A0947 ← | Coproporphyrinogen III oxidase, Fe‑S oxidoreductase |
| RA | AM260479 | 1,056,947 | +G | intergenic (+211/‑15) | h16_A0964 → / → h16_A0965 | conserved hypothetical protein/conserved hypothetical protein |
| RA | AM260479 | 1,071,935 | +G | coding (626/627 nt) | h16_A0979 → | Hypothetical protein |
| RA | AM260479 | 1,071,996 | +G | intergenic (+60/‑123) | h16_A0979 → / → h16_A0980 | Hypothetical protein/Hypothetical protein |
| RA | AM260479 | 1,076,499 | C→T | P267L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,076,517 | C→T | P273L (CCG→CTG) | cpaF3 → | flp pilus assembly ATPase CpaF |
| RA | AM260479 | 1,081,436 | +C | coding (437/447 nt) | h16_A0989 → | Hypothetical protein |
| RA | AM260479 | 1,081,530 | T→C | L30L (TTG→CTG) | h16_A0990 → | outer membrane protein and related peptidoglycan‑associated (lipo)proteins |
| RA | AM260479 | 1,089,440 | Δ1 bp | intergenic (+115/‑17) | h16_A0996 → / → h16_A0997 | FAD/FMN‑containing dehydrogenase/conserved hypothetical protein |
| RA | AM260479 | 1,112,158 | Δ1 bp | coding (2295/2469 nt) | xdhB1 ← | xanthine dehydrogenase, subunit B |
| RA | AM260479 | 1,167,791 | T→C | intergenic (+238/‑365) | h16_A1070 → / → cyoA1 | acyl dehydratase/bo3‑type quinol oxidase, subunit II |
| RA | AM260479 | 1,191,771 | Δ1 bp | coding (5/390 nt) | h16_A1095 ← | Hypothetical protein |
| RA | AM260479 | 1,231,117 | Δ1 bp | coding (2606/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,142 | Δ1 bp | coding (2631/2652 nt) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,143 | C→G | P878A (CCC→GCC) | glnE → | glutamine synthetase adenylyltransferase |
| RA | AM260479 | 1,231,177 | Δ1 bp | intergenic (+14/‑201) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,231,226 | 2 bp→CA | intergenic (+63/‑151) | glnE → / → h16_A1128 | glutamine synthetase adenylyltransferase/Membrane protein |
| RA | AM260479 | 1,240,057 | +T | intergenic (‑57/‑218) | h16_A1136 ← / → grpE | conserved hypothetical protein/molecular chaperone GrpE |
| RA | AM260479 | 1,354,645 | +C | intergenic (+98/‑15) | h16_A1248 → / → h16_A1249 | predicted signal transduction protein containingCHASE, PAS, GGDEF and EAL domains/Hypothetical protein |
| RA | AM260479 | 1,402,540 | C→G | G893A (GGC→GCC) | h16_A1292 ← | ATP‑dependent transcriptional regulator,MalT‑family |
| RA | AM260479 | 1,464,365 | Δ1 bp | coding (49/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,433 | A→G | Q39Q (CAA→CAG) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,464,435 | T→C | L40P (CTG→CCG) | h16_A1354 → | conserved hypothetical protein |
| MC JC | AM260479 | 1,464,441 | Δ37 bp | coding (125‑161/552 nt) | h16_A1354 → | conserved hypothetical protein |
| RA | AM260479 | 1,492,923 | T→C | L191L (TTG→CTG) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,492,953 | T→G | S201A (TCA→GCA) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,493,307 | T→G | F319V (TTC→GTC) | pdhB → | dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex |
| RA | AM260479 | 1,744,688 | G→C | G211A (GGC→GCC) | h16_A1608 → | conserved hypothetical protein containing von Willebrand factor (vWF) type A |
| RA | AM260479 | 1,841,200 | +G | intergenic (‑2736/‑2680) | h16_A1684 ← / → ycaC | conserved hypothetical protein/YcaC related amidohydrolase |
| RA | AM260479 | 2,016,501 | T→C | V678V (GTT→GTC) | h16_A1857 → | Uncharacterized protein involved in exopolysaccharide biosynthesis |
| RA | AM260479 | 2,111,013 | +G | coding (553/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,111,023 | +G | coding (563/1089 nt) | h16_A1942 → | Hypothetical protein |
| RA | AM260479 | 2,253,193 | +C | coding (243/258 nt) | h16_A2071 → | Hypothetical protein |
| RA | AM260479 | 2,274,430 | C→G | G565G (GGG→GGC) | h16_A2092 ← | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| RA | AM260479 | 2,303,559 | A→C | S217R (AGT→AGG) | h16_A2116 ← | Putative DNA polymerase bacteriophage‑type,uracil‑DNA glycosylase superfamily |
| RA | AM260479 | 2,517,378 | T→G | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,380 | G→C | P77A (CCA→GCC) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,517,386 | A→G | Y75H (TAT→CAT) | zntA ← | putative heavy metal transporting P‑type ATPase |
| RA | AM260479 | 2,579,212 | G→C | A121A (GCC→GCG) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,579,243 | A→G | I111T (ATT→ACT) | h16_A2374 ← | Metallopeptidase, M23B subfamily |
| RA | AM260479 | 2,580,039 | A→G | R155R (CGT→CGC) | h16_A2375 ← | Protein‑L‑isoaspartate carboxylmethyltransferase |
| RA | AM260479 | 2,594,082 | T→C | Q124Q (CAA→CAG) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,594,128 | Δ1 bp | coding (326/957 nt) | cR ← | Recombinational DNA repair protein (RecF pathway) |
| RA | AM260479 | 2,608,803 | T→C | W365R (TGG→CGG) | rho → | transcription termination factor Rho |
| RA | AM260479 | 2,616,505 | C→G | A45G (GCC→GGC) | h16_A2404 → | predicted esterase of the alpha‑beta hydrolase superfamily |
| RA | AM260479 | 2,787,923 | +C | intergenic (+165/‑55) | cafA2 → / → moaA1 | Ribonuclease G and E/molybdopterin biosynthesis protein |
| RA | AM260479 | 2,907,305 | 2 bp→AT | coding (181‑182/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,313 | Δ1 bp | coding (189/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,329 | Δ1 bp | coding (205/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,907,333 | Δ1 bp | coding (209/1221 nt) | h16_A2693 → | conserved hypothetical protein |
| RA | AM260479 | 2,955,197 | Δ1 bp | coding (1034/1071 nt) | h16_A2735 → | phenylpropionate dioxygenase or related ring‑hydroxylating dioxygenase, large terminal subunit |
| RA | AM260479 | 3,247,959 | 2 bp→CA | coding (723‑724/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,987 | Δ1 bp | coding (751/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,992 | Δ1 bp | coding (756/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,247,999 | Δ1 bp | coding (763/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,007 | Δ1 bp | coding (771/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,010 | C→G | A258A (GCC→GCG) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,045 | Δ1 bp | coding (809/813 nt) | h16_A3001 → | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,248,064 | +A | intergenic (+15/‑203) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,248,092 | G→C | intergenic (+43/‑175) | h16_A3001 → / → hemK1 | transcriptional regulator, LysR‑family/methylase of polypeptide chain release factors |
| RA | AM260479 | 3,285,635 | G→C | G181R (GGC→CGC) | nadB → | L‑Aspartate oxidase |
| RA | AM260479 | 3,301,576 | +G | intergenic (+45/‑146) | lspA → / → dfp | lipoprotein signal peptidase II/phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,302,920 | +C | coding (1199/1251 nt) | dfp → | phosphopantothenoylcysteine synthetase/decarboxylase |
| RA | AM260479 | 3,333,763 | +G | coding (5/615 nt) | serB2 → | phosphoserine phosphatase |
| MC JC | AM260479 | 3,399,144 | Δ1,321 bp | [leuS]–h16_A3140 | [leuS], h16_A3140 | |
| RA | AM260479 | 3,403,755 | +C | coding (63/996 nt) | phcA ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,461,712 | +G | coding (823/969 nt) | h16_A3204 ← | transcriptional regulator, LysR‑family |
| RA | AM260479 | 3,515,018 | C→G | noncoding (32/75 nt) | tRNA‑Pro (CGG) → | tRNA‑Pro |
| RA | AM260479 | 3,515,314 | Δ1 bp | intergenic (+253/‑570) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,515,428 | +C | intergenic (+367/‑456) | tRNA‑Pro (CGG) → / → pilB | tRNA‑Pro/Type IV pilus assembly protein PilB |
| RA | AM260479 | 3,529,526 | +G | intergenic (‑40/‑264) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,529,607 | +C | intergenic (‑121/‑183) | secA ← / → h16_A3265 | preprotein translocase subunit SecA/Hypothetical protein |
| RA | AM260479 | 3,602,642 | +A | intergenic (‑39/+87) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,602,688 | (G)6→5 | intergenic (‑85/+41) | h16_A3328 ← / ← h16_A3329 | conserved hypothetical membrane protein/unassigned peptidase, M61 subfamily (glycyl aminopeptidase) |
| RA | AM260479 | 3,615,716 | +C | intergenic (+42/‑147) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,615,722 | +A | intergenic (+48/‑141) | prfA → / → h16_A3341 | protein chain release factor A (RF‑1)/Hypothetical protein |
| RA | AM260479 | 3,720,402 | G→T | D170Y (GAC→TAC) | h16_A3441 → | periplasmic multimodular transpeptidase/transglycosylase |
| RA | AM260479 | 3,905,524 | G→C | A1285G (GCC→GGC) | putA ← | bifunctional proline dehydrogenase and proline oxidase |
| RA | AM260479 | 3,972,184 | +C | intergenic (‑136/‑395) | h16_A3682 ← / → h16_A3683 | putative methyltransferase/Hypothetical protein |
| RA | AM260479 | 3,983,831 | C→T | D23N (GAC→AAC) | ntrX ← | response regulator containing a Fis‑type DNA‑binding domain, NtrX |
| RA | AM260479 | 3,998,635 | +C | intergenic (‑221/+527) | h16_A3705 ← / ← h16_A3706 | transcriptional regulator, LysR‑family/conserved hypothetical protein |
| RA | AM260480 | 69,908 | +G | intergenic (+89/‑184) | h16_B0060 → / → h16_B0061 | conserved hypothetical membrane protein/ABC‑type transporter, periplasmic component |
| RA | AM260480 | 153,689 | +G | intergenic (‑67/+93) | h16_B0133 ← / ← h16_B0134 | conserved hypothetical protein/outer membrane protein (porin) |
| RA | AM260480 | 157,096 | +G | intergenic (‑26/+41) | h16_B0136 ← / ← h16_B0137 | cysteine desulfurase/conserved hypothetical membrane protein |
| RA | AM260480 | 159,381 | +G | intergenic (‑13/‑342) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 159,389 | +G | intergenic (‑21/‑334) | h16_B0138 ← / → h16_B0139 | transcriptional regulator, IclR‑family/conserved hypothetical transmembrane protein |
| RA | AM260480 | 164,760 | C→T | A15V (GCC→GTC) | acoR → | transcriptional regulator of acetoin catabolism,PspF‑family |
| RA | AM260480 | 274,470 | (G)10→9 | intergenic (+18/‑626) | h16_B0246 → / → fhaB | Hypothetical protein/filamentous hemagglutinin / adhesin |
| RA | AM260480 | 293,407 | T→A | Y759N (TAC→AAC) | flhF → | Flagellar GTP‑binding protein |
| RA | AM260480 | 433,189 | A→C | R133R (CGA→CGC) | h16_B0381 → | Acetyl‑CoA acetyltransferase |
| RA | AM260480 | 507,425 | +A | coding (27/564 nt) | h16_B0448 → | fragment of ABC‑type transport system,periplasmic component: APC family |
| RA | AM260480 | 635,877 | T→C | E259E (GAA→GAG) | fliM ← | flagellar motor switch protein |
| RA | AM260480 | 753,133 | T→C | K37E (AAG→GAG) | h16_B0675 ← | Acyl‑CoA dehydrogenase,short‑chain specific |
| RA | AM260480 | 919,006 | T→G | C159G (TGC→GGC) | h16_B0812 → | hydrolase or acyltransferase (alpha/beta hydrolase superfamily) |
| RA | AM260480 | 951,073 | +G | intergenic (‑29/+230) | h16_B0838 ← / ← h16_B0839 | conserved hypothetical protein/transcriptional regulator, CRP‑family |
| RA | AM260480 | 963,917 | Δ1 bp | intergenic (+84/‑3) | h16_B0849 → / → h16_B0850 | Acyl‑CoA dehydrogenase/Acyl‑CoA dehydrogenase, short‑chain specific |
| RA | AM260480 | 978,518 | A→G | S117G (AGC→GGC) | h16_B0862 → | cytosine deaminase or related metal‑dependent hydrolase |
| RA | AM260480 | 1,020,478 | A→G | L254L (TTG→CTG) | h16_B0899 ← | transporter of the major facilitator superfamily(MFS) |
| RA | AM260480 | 1,166,676 | +G | intergenic (+150/‑109) | h16_B1032 → / → h16_B1033 | conserved hypothetical protein/probable extra‑cytoplasmic solute receptor |
| RA | AM260480 | 1,192,562 | +C | coding (163/594 nt) | cccA → | cytochrome c, mono‑or diheme variant |
| RA | AM260480 | 1,326,746 | +G | intergenic (+47/‑123) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,751 | +G | intergenic (+52/‑118) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 1,326,761 | +G | intergenic (+62/‑108) | h16_B1172 → / → h16_B1173 | Amidase/MFS transporter |
| RA | AM260480 | 2,018,102 | +C | intergenic (+111/+98) | h16_B1778 → / ← h16_B1779 | putative peptidase/putative peptidase, S33 family |
| RA | AM260480 | 2,135,859 | +C | intergenic (‑237/‑97) | h16_B1889 ← / → h16_B1890 | transcriptional regulator, IclR‑family/APC transporter, AAT family |
| RA | AM260480 | 2,308,233 | (C)5→4 | intergenic (+176/‑161) | h16_B2050 → / → h16_B2051 | response regulator containing a GGDEF effector domain/conserved hypothetical protein |
| RA | AM260480 | 2,431,093 | Δ1 bp | coding (2380/2469 nt) | h16_B2148 → | membrane carboxypeptidase |
| RA | AM260480 | 2,737,499 | A→G | intergenic (‑216/+28) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,505 | Δ1 bp | intergenic (‑222/+22) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,737,510 | T→G | intergenic (‑227/+17) | h16_B2423 ← / ← h16_B2424 | periplasmic solute binding protein/Hypothetical protein |
| RA | AM260480 | 2,843,580 | +G | intergenic (‑1/+68) | pip ← / ← h16_B2516 | prolyl aminopeptidase/transcriptional regulator, LysR‑family |
| MC JC | AM260480 | 2,912,452 | Δ39 bp | intergenic (+243/–) | h16_B2579 → / – | cold shock protein, DNA‑binding/– |
| RA | AY305378 | 682 | C→A | P190T (CCG→ACG) | hoxK → | membrane‑bound [NiFe] hydrogenase small subunit |
| JC JC | AY305378 | 84,810 | ISAE1 (+) +8 bp | [hoxW] | [hoxW] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AM260479 | 55295 | 55326 | 32 | 2 [0] | [0] 2 | h16_A0040 | predicted membrane protein |
| * | * | ÷ | AM260479 | 89777 | 89827 | 51 | 2 [1] | [1] 4 | h16_A0074 | transcriptional regulator, AraC‑family |
| * | * | ÷ | AM260479 | 156394 | 156433 | 40 | 2 [0] | [1] 3 | [h16_A0142] | [h16_A0142] |
| * | * | ÷ | AM260479 | 254009 | 254014 | 6 | 4 [0] | [0] 2 | h16_A0240 | Acetyltransferase (GNAT) family |
| * | * | ÷ | AM260479 | 254318 | 254341 | 24 | 2 [0] | [1] 3 | [h16_A0241] | [h16_A0241] |
| * | * | ÷ | AM260479 | 326745 | 326759 | 15 | 3 [1] | [1] 2 | h16_A0308 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 381527 | 381645 | 119 | 3 [0] | [1] 2 | ftsY | signal recognition particle receptor FtsY |
| * | * | ÷ | AM260479 | 442972 | 443003 | 32 | 3 [1] | [0] 2 | h16_A0423 | multidrug resistance efflux pump |
| * | * | ÷ | AM260479 | 545052 | 545062 | 11 | 2 [0] | [0] 2 | plsC1/h16_A0520 | 1‑Acylglycerol‑3‑phosphate O‑acyltransferase/histidinol phosphatase or related phosphatase |
| * | * | ÷ | AM260479 | 580565 | 580585 | 21 | 2 [0] | [0] 2 | h16_A0553 | Hypothetical protein |
| * | * | ÷ | AM260479 | 602912 | 602959 | 48 | 2 [1] | [0] 2 | [sua] | [sua] |
| * | * | ÷ | AM260479 | 660636 | 660640 | 5 | 4 [0] | [0] 2 | h16_A0623 | predicted metal‑dependent hydrolase with the TIM‑barrel fold |
| * | * | ÷ | AM260479 | 663328 | 663348 | 21 | 5 [0] | [0] 2 | h16_A0625 | outer membrane protein (porin) |
| * | * | ÷ | AM260479 | 718138 | 718165 | 28 | 3 [0] | [0] 2 | h16_A0667 | Sodium:sulfate symporter transmembrane region |
| * | * | ÷ | AM260479 | 780150 | 780192 | 43 | 4 [0] | [0] 6 | [h16_A0723] | [h16_A0723] |
| * | * | ÷ | AM260479 | 789447 | 789478 | 32 | 2 [0] | [0] 2 | h16_A0729 | transcriptional regulator, LysR‑family |
| * | * | ÷ | AM260479 | 805358 | 805394 | 37 | 3 [1] | [0] 2 | h16_A0741 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 805472 | 805492 | 21 | 4 [0] | [0] 4 | h16_A0741 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1017300 | 1017316 | 17 | 2 [1] | [0] 2 | h16_A0921 | Aerobic‑type carbon monoxide dehydrogenase homolog, small subunit |
| * | * | ÷ | AM260479 | 1035273 | 1035313 | 41 | 4 [1] | [0] 3 | h16_A0939 | Pirin‑related protein |
| * | * | ÷ | AM260479 | 1129299 | 1129363 | 65 | 2 [0] | [0] 2 | h16_A1031 | membrane spanning protein, RDD family |
| * | * | ÷ | AM260479 | 1184316 | 1184321 | 6 | 2 [0] | [0] 2 | ureG | urea amidohydrolase (urease) regulatory and maturation protein UreG |
| * | * | ÷ | AM260479 | 1206084 | 1206178 | 95 | 2 [1] | [1] 2 | h16_A1108 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1228098 | 1228128 | 31 | 2 [0] | [0] 2 | [h16_A1126] | [h16_A1126] |
| * | * | ÷ | AM260479 | 1266368 | 1266415 | 48 | 2 [0] | [1] 2 | h16_A1166 | hypothetical membrane spanning protein |
| * | * | ÷ | AM260479 | 1319158 | 1319188 | 31 | 2 [0] | [0] 2 | h16_A1213/suhB | conserved hypothetical protein/inositol monophosphatase |
| * | * | ÷ | AM260479 | 1329328 | 1329330 | 3 | 2 [0] | [0] 3 | mesJ | Predicted ATPase of the PP‑loop superfamily implicated in cell cycle control |
| * | * | ÷ | AM260479 | 1344398 | 1344418 | 21 | 3 [1] | [0] 5 | h16_A1239 | 3‑Hydroxyisobutyrate dehydrogenase |
| * | * | ÷ | AM260479 | 1365460 | 1365464 | 5 | 2 [0] | [0] 2 | h16_A1255 | two domain protein: Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit |
| * | * | ÷ | AM260479 | 1380639 | 1380643 | 5 | 2 [0] | [0] 3 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1380850 | 1380921 | 72 | 5 [1] | [0] 3 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1381080 | 1381091 | 12 | 3 [0] | [0] 2 | h16_A1272 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 1578865 | 1578947 | 83 | 2 [1] | [0] 2 | [mfd] | [mfd] |
| * | * | ÷ | AM260479 | 1589847 | 1589914 | 68 | 3 [1] | [0] 4 | acrA3 | Cation/multidrug efflux system, mebrane‑fusion component |
| * | * | ÷ | AM260479 | 1639412 | 1639434 | 23 | 2 [1] | [0] 2 | gatA3/h16_A1510 | Glutamyl/Aspartyl‑tRNA(Gln/Asp) amidotransferasesubunit A/predicted transcription regulator, contains HTH domain (MarR family) |
| * | * | ÷ | AM260479 | 1641637 | 1641770 | 134 | 2 [1] | [1] 2 | purL | Phosphoribosyl‑formylglycinamidine synthase |
| * | * | ÷ | AM260479 | 1713744 | 1713809 | 66 | 2 [1] | [0] 2 | h16_A1582 | DNA segregation ATPase FtsK/SpoIIIE related protein |
| * | * | ÷ | AM260479 | 1723472 | 1723522 | 51 | 2 [0] | [1] 4 | [h16_A1589] | [h16_A1589] |
| * | * | ÷ | AM260479 | 1741050 | 1741087 | 38 | 2 [1] | [0] 4 | h16_A1604 | MoxR‑like ATPase |
| * | * | ÷ | AM260479 | 1746663 | 1746683 | 21 | 2 [1] | [1] 2 | h16_A1609 | hypothetical membrane spanning protein |
| * | * | ÷ | AM260479 | 1847995 | 1848026 | 32 | 2 [0] | [0] 2 | h16_A1692/h16_A1693 | conserved hypothetical protein/transcriptional regulator, LacI‑family |
| * | * | ÷ | AM260479 | 1854892 | 1854955 | 64 | 2 [0] | [0] 2 | h16_A1698 | MFS transporter, Sugar (and other) family |
| * | * | ÷ | AM260479 | 1953139 | 1953169 | 31 | 2 [0] | [0] 2 | h16_A1789/h16_A1791 | glycerol trinitrate reductase/predicted redox protein, regulator of disulfide bond formation |
| * | * | ÷ | AM260479 | 1993399 | 1993411 | 13 | 2 [0] | [0] 2 | h16_A1831 | Hypothetical protein |
| * | * | ÷ | AM260479 | 2081643 | 2081662 | 20 | 2 [0] | [0] 2 | h16_A1915 | Predicted Fe‑S protein |
| * | * | ÷ | AM260479 | 2208788 | 2208832 | 45 | 2 [0] | [1] 2 | h16_A2032 | hypothetical membrane associated protein |
| * | * | ÷ | AM260479 | 2273209 | 2273212 | 4 | 2 [0] | [0] 2 | h16_A2091 | Membrane‑associated Ser/Thr and Tyr protein phosphatase (dual specificity) |
| * | * | ÷ | AM260479 | 2320595 | 2320608 | 14 | 2 [0] | [1] 2 | h16_A2134/h16_A2135 | transcriptional regulator, LysR‑family/response regulator, NarL‑family |
| * | * | ÷ | AM260479 | 2358644 | 2358665 | 22 | 2 [1] | [0] 3 | czrB | Cation/multidrug efflux pump |
| * | * | ÷ | AM260479 | 2449848 | 2449881 | 34 | 5 [1] | [0] 2 | h16_A2254 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260479 | 2463476 | 2463554 | 79 | 2 [0] | [1] 6 | h16_A2268/h16_A2269 | uncharacterized conserved protein/bacterioferritin comigratory protein |
| * | * | ÷ | AM260479 | 2546041 | 2546158 | 118 | 3 [1] | [1] 3 | argAB | acetylglutamate kinase and acetyltransferase |
| * | * | ÷ | AM260479 | 2595287 | 2595312 | 26 | 2 [0] | [0] 2 | dnaX | DNA polymerase III tau/gamma subunit |
| * | * | ÷ | AM260479 | 2603701 | 2603721 | 21 | 2 [0] | [1] 3 | addB | two domain protein: Inactivated superfamily I helicase and RecB family exonuclease |
| * | * | ÷ | AM260479 | 2651982 | 2651996 | 15 | 2 [0] | [0] 2 | ppk1 | polyphosphate kinase |
| * | * | ÷ | AM260479 | 3032764 | 3032777 | 14 | 2 [0] | [0] 4 | h16_A2804 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3071465 | 3071485 | 21 | 2 [0] | [1] 3 | pilX3 | Type IV pilus assembly protein PilX |
| * | * | ÷ | AM260479 | 3154686 | 3154708 | 23 | 2 [0] | [1] 3 | ppc | phosphoenolpyruvate carboxylase |
| * | * | ÷ | AM260479 | 3179200 | 3179230 | 31 | 3 [1] | [0] 2 | h16_A2942/mrp | conserved hypothetical protein/ATPase involved in chromosome partitioning |
| * | * | ÷ | AM260479 | 3207534 | 3207555 | 22 | 5 [0] | [1] 3 | cobU | Adenosylcobinamide‑phosphate guanylyltransferase(CobU) |
| * | * | ÷ | AM260479 | 3341360 | 3341410 | 51 | 2 [0] | [0] 2 | h16_A3087 | Anthranilate/para‑aminobenzoate synthase component I |
| * | * | ÷ | AM260479 | 3360887 | 3360920 | 34 | 3 [1] | [1] 3 | h16_A3107 | 4‑Hydroxybenzoate octaprenyltransferase |
| * | * | ÷ | AM260479 | 3365813 | 3365846 | 34 | 2 [0] | [0] 2 | cG | ATP‑dependent DNA helicase |
| * | * | ÷ | AM260479 | 3472990 | 3473006 | 17 | 2 [0] | [0] 2 | h16_A3218/h16_A3219 | transcriptional regulator, TetR/AcrR‑family/Hypothetical protein |
| * | * | ÷ | AM260479 | 3482480 | 3482525 | 46 | 3 [1] | [0] 2 | h16_A3225/h16_A3226 | ABC‑type transporter, ATPase and permease components/Hypothetical protein |
| * | * | ÷ | AM260479 | 3548171 | 3548201 | 31 | 2 [0] | [0] 2 | ftsI1 | peptidoglycan glycosyltransferase |
| * | * | ÷ | AM260479 | 3554487 | 3554514 | 28 | 3 [1] | [0] 4 | h16_A3287 | Hypothetical protein |
| * | * | ÷ | AM260479 | 3609145 | 3609166 | 22 | 2 [0] | [0] 2 | h16_A3334 | conserved hypothetical protein |
| * | * | ÷ | AM260479 | 3614549 | 3614575 | 27 | 2 [0] | [0] 2 | hemA/prfA | Glutamyl‑tRNA reductase/protein chain release factor A (RF‑1) |
| * | * | ÷ | AM260479 | 3671719 | 3671726 | 8 | 2 [1] | [0] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3671777 | 3671797 | 21 | 2 [0] | [0] 2 | h16_A3390/h16_A3391 | signal transduction histidine kinase/Hypothetical protein related to helicases |
| * | * | ÷ | AM260479 | 3844298 | 3844312 | 15 | 3 [0] | [0] 3 | h16_A3574 | Cysteine/acetylserine efflux protein |
| * | * | ÷ | AM260479 | 3857099 | 3857135 | 37 | 6 [0] | [0] 2 | h16_A3590 | C4‑dicarboxylate transport protein |
| * | * | ÷ | AM260479 | 3909977 | 3910036 | 60 | 2 [1] | [0] 2 | priA | Primosomal protein N' |
| * | * | ÷ | AM260479 | 3979075 | 3979121 | 47 | 2 [0] | [0] 2 | lamB | Maltoporin‑like channel (LamB porin) |
| * | * | ÷ | AM260479 | 4004553 | 4004572 | 20 | 3 [1] | [0] 2 | h16_A3710 | response regulator, NarL‑family |
| * | * | ÷ | AM260479 | 4015947 | 4015977 | 31 | 3 [1] | [0] 4 | phuW | uncharacterized iron‑regulated protein |
| * | * | ÷ | AM260480 | 81707 | 81738 | 32 | 2 [0] | [0] 2 | fmdA1/h16_B0073 | Formamidase/ABC‑type transporter |
| * | * | ÷ | AM260480 | 159896 | 159899 | 4 | 2 [0] | [0] 2 | h16_B0139 | conserved hypothetical transmembrane protein |
| * | * | ÷ | AM260480 | 174692–175127 | 180000–175130 | 4–5309 | 2 [1] | [1] 2 | rrsD–[rrfD] | rrsD,tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlD,[rrfD] |
| * | * | ÷ | AM260480 | 193566 | 193589 | 24 | 2 [0] | [0] 2 | h16_B0168 | putative multidrug resistance protein |
| * | * | ÷ | AM260480 | 237930 | 237935 | 6 | 2 [0] | [1] 2 | h16_B0210/h16_B0211 | phosphohistidine phosphatase SixA/transcriptional regulator, LysR‑family |
| * | * | ÷ | AM260480 | 329555 | 329579 | 25 | 2 [1] | [1] 2 | phnC2 | ABC‑type transporter, ATPase component: PhnT family |
| * | * | ÷ | AM260480 | 481505 | 481551 | 47 | 3 [1] | [0] 4 | h16_B0421 | aldehyde dehydrogenase, NAD(P)‑dependent |
| * | * | ÷ | AM260480 | 571266 | 571296 | 31 | 2 [0] | [0] 2 | h16_B0507 | Hypothetical protein |
| * | * | ÷ | AM260480 | 633609 | 633623 | 15 | 2 [0] | [0] 2 | fliR/fliQ | flagellar biosynthesis protein/flagellar biosynthesis protein |
| * | * | ÷ | AM260480 | 665298 | 665298 | 1 | 2 [0] | [0] 2 | h16_B0592 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 686620 | 686633 | 14 | 2 [0] | [0] 2 | h16_B0616 | predicted acyl‑CoA transferase/carnitine dehydratase |
| * | * | ÷ | AM260480 | 751997 | 752045 | 49 | 5 [0] | [0] 3 | h16_B0674/h16_B0675 | conserved hypothetical protein/Acyl‑CoA dehydrogenase,short‑chain specific |
| * | * | ÷ | AM260480 | 792779 | 792807 | 29 | 2 [0] | [0] 2 | h16_B0703 | Acyl‑CoA dehydrogenase |
| * | * | ÷ | AM260480 | 867702–869614 | 872729–869619 | 6–5028 | 3 [1] | [0] 2 | [rrsE]–[rrfE] | [rrsE],tRNA‑Ile (GAT),tRNA‑Ala (TGC),rrlE,[rrfE] |
| * | * | ÷ | AM260480 | 1041177 | 1041199 | 23 | 2 [0] | [0] 2 | h16_B0920 | Flavodoxin |
| * | * | ÷ | AM260480 | 1208409 | 1208437 | 29 | 2 [0] | [1] 3 | h16_B1068 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1222279 | 1222282 | 4 | 2 [0] | [0] 2 | h16_B1080/tyrB2 | Hypothetical protein/tyrosine aminotransferase |
| * | * | ÷ | AM260480 | 1311207 | 1311209 | 3 | 2 [0] | [0] 2 | h16_B1159 | transcriptional regulator |
| * | * | ÷ | AM260480 | 1319240 | 1319249 | 10 | 4 [0] | [1] 2 | h16_B1167/h16_B1168 | Hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 1336958 | 1336971 | 14 | 3 [0] | [1] 3 | h16_B1182 | Metallo‑beta‑lactamase |
| * | * | ÷ | AM260480 | 1416958 | 1416990 | 33 | 2 [0] | [0] 2 | h16_B1257 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1432533 | 1432621 | 89 | 3 [1] | [0] 3 | h16_B1275 | predicted membrane protein |
| * | * | ÷ | AM260480 | 1434861 | 1434867 | 7 | 2 [0] | [0] 2 | h16_B1277 | hypothetical membrane associated protein |
| * | * | ÷ | AM260480 | 1445328 | 1445354 | 27 | 2 [0] | [1] 2 | phnH1 | bacterial phosphonate metabolism protein |
| * | * | ÷ | AM260480 | 1482243 | 1482288 | 46 | 3 [1] | [0] 2 | h16_B1335 | Acyl‑CoA synthetase (AMP‑forming)/AMP‑acid ligase II |
| * | * | ÷ | AM260480 | 1521337 | 1521346 | 10 | 2 [0] | [1] 3 | paaK2 | phenylacetic acid degradation protein K,phenylacetaldehyde dehydrogenase |
| * | * | ÷ | AM260480 | 1551778 | 1551844–1551822 | 45–67 | 3 [0] | [1] 3 | cbbK2 | phosphoglycerate kinase |
| * | * | ÷ | AM260480 | 1632970 | 1632985 | 16 | 3 [0] | [0] 2 | h16_B1458 | signal transduction histidine kinase |
| * | * | ÷ | AM260480 | 1748464 | 1748519 | 56 | 3 [1] | [0] 2 | h16_B1557 | Glycosidase‑like protein |
| * | * | ÷ | AM260480 | 1808135 | 1808170 | 36 | 2 [0] | [0] 2 | h16_B1604 | predicted phosphohydrolase |
| * | * | ÷ | AM260480 | 1861299 | 1861311 | 13 | 2 [0] | [0] 2 | h16_B1648 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1861529 | 1861549 | 21 | 4 [0] | [0] 7 | h16_B1648 | Hypothetical protein |
| * | * | ÷ | AM260480 | 1894836 | 1894845 | 10 | 2 [0] | [0] 3 | h16_B1682 | ABC‑type transporter, ATPase and permease components: Pep3E family |
| * | * | ÷ | AM260480 | 1908382 | 1908394 | 13 | 2 [0] | [1] 2 | nrpB | Non‑ribosomal peptide synthetase |
| * | * | ÷ | AM260480 | 1935961 | 1935974 | 14 | 6 [0] | [0] 2 | oxlT | Oxalate / formate antiporter, MFS‑type, OFA family |
| * | * | ÷ | AM260480 | 2297966 | 2298023 | 58 | 2 [1] | [1] 3 | h16_B2042/h16_B2043 | Hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2302562 | 2302634 | 73 | 2 [1] | [1] 3 | cheR2 | methylase of chemotaxis methyl‑accepting proteins |
| * | * | ÷ | AM260480 | 2311317 | 2311317 | 1 | 28 [0] | [0] 23 | h16_B2054 | putative transporter |
| * | * | ÷ | AM260480 | 2394070 | 2394083 | 14 | 2 [1] | [0] 2 | h16_B2118 | hypothetical membrane spanning protein |
| * | * | ÷ | AM260480 | 2431250 | 2431279 | 30 | 3 [1] | [0] 2 | h16_B2148/h16_B2149 | membrane carboxypeptidase/conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2431334 | 2431367 | 34 | 2 [0] | [0] 2 | h16_B2149 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2459121 | 2459159 | 39 | 3 [1] | [1] 3 | h16_B2171 | Glycosyltransferase, probably involved in cell wall biogenesis |
| * | * | ÷ | AM260480 | 2465946 | 2465966 | 21 | 2 [0] | [0] 3 | h16_B2176 | predicted transmembrane exporter protein |
| * | * | ÷ | AM260480 | 2515847 | 2515863 | 17 | 2 [0] | [0] 2 | h16_B2217 | ABC‑type transporter, permease component |
| * | * | ÷ | AM260480 | 2532184 | 2532206 | 23 | 2 [0] | [0] 3 | bkdA1 | 2‑Oxoisovalerate dehydrogenase E1 component,alpha subunit |
| * | * | ÷ | AM260480 | 2645555 | 2645698 | 144 | 2 [1] | [1] 2 | [narX2]–[narL2] | [narX2],[narL2] |
| * | * | ÷ | AM260480 | 2647121 | 2647180 | 60 | 2 [0] | [1] 3 | h16_B2337 | conserved hypothetical protein |
| * | * | ÷ | AM260480 | 2677902 | 2677905 | 4 | 2 [0] | [0] 2 | fliK1 | flagellar hook‑length control protein |
| * | * | ÷ | AM260480 | 2734206 | 2734225 | 20 | 3 [0] | [1] 3 | gltP4 | Proton/sodium‑dicarboxylate symporter |
| * | * | ÷ | AM260480 | 2866433 | 2866457 | 25 | 2 [0] | [0] 2 | h16_B2539 | conserved hypothetical protein |
| * | * | ÷ | AY305378 | 85313 | 85341 | 29 | 2 [0] | [0] 2 | [hoxI] | [hoxI] |
| * | * | ÷ | AY305378 | 92665 | 92702 | 38 | 3 [1] | [0] 2 | [PHG099] | [PHG099] |
| * | * | ÷ | AY305378 | 151837 | 151890 | 54 | 2 [0] | [1] 3 | PHG152/PHG153 | conserved hypothetical protein/conserved hypothetical protein |
| * | * | ÷ | AY305378 | 156533 | 156619 | 87 | 3 [1] | [0] 2 | kfrA2 | putative KfrA‑like protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AM260479 | = 315882 | 20 (0.790) | 7 (0.420) +35 bp |
7/134 | 0.8 | 34.2% | coding (1082/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system |
| ? | AM260479 | 315918 = | 21 (0.830) | coding (1046/1998 nt) | gltS1 | signal transduction histidine kinase regulating C4‑dicarboxylate transport system | |||||
| * | ? | AM260479 | 332818 = | 28 (1.110) | 6 (0.250) | 5/190 | 1.6 | 20.7% | coding (1126/1710 nt) | nagE | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC, N‑acetylglucosamine‑specific |
| ? | AM260479 | 332850 = | 20 (0.850) | coding (1158/1710 nt) | nagE | Protein‑N(pi)‑phosphohistidine‑sugar phosphotransferase II ABC, N‑acetylglucosamine‑specific | |||||
| * | ? | AM260479 | 505004 = | 8 (0.320) | 3 (0.130) | 3/186 | 2.1 | 28.2% | coding (307/1308 nt) | ldhA | dehydrogenase related to lactate dehydrogenases |
| ? | AM260479 | 505082 = | 8 (0.350) | coding (385/1308 nt) | ldhA | dehydrogenase related to lactate dehydrogenases | |||||
| * | ? | AM260479 | = 684259 | 24 (0.950) | 10 (0.470) | 8/172 | 0.9 | 31.6% | coding (48/867 nt) | fdsC | Uncharacterized protein required for formate dehydrogenase activity |
| ? | AM260479 | = 684243 | 23 (1.080) | coding (32/867 nt) | fdsC | Uncharacterized protein required for formate dehydrogenase activity | |||||
| * | ? | AM260479 | = 726069 | 8 (0.320) | 6 (0.250) | 4/190 | 1.8 | 34.8% | coding (537/723 nt) | modC | ABC‑type transporter, ATPase component: MolT family |
| ? | AM260479 | 726153 = | 15 (0.640) | coding (453/723 nt) | modC | ABC‑type transporter, ATPase component: MolT family | |||||
| * | ? | AM260479 | 735914 = | 31 (1.230) | 7 (0.290) | 7/194 | 1.2 | 20.4% | coding (925/1140 nt) | h16_A0686 | CBS‑domain‑containing membrane protein |
| ? | AM260479 | 735936 = | 25 (1.040) | coding (903/1140 nt) | h16_A0686 | CBS‑domain‑containing membrane protein | |||||
| * | ? | AM260479 | 820072 = | 24 (0.950) | 12 (0.510) | 11/188 | 0.7 | 36.9% | coding (1934/2340 nt) | ftsK | DNA segregation ATPase ftsk/spoIIIE proteins |
| ? | AM260479 | 820090 = | 19 (0.810) | coding (1952/2340 nt) | ftsK | DNA segregation ATPase ftsk/spoIIIE proteins | |||||
| * | ? | AM260479 | 872790 = | 23 (0.910) | 7 (0.300) | 5/186 | 1.6 | 26.4% | coding (366/423 nt) | ihfB | integration host factor beta subunit |
| ? | AM260479 | 872809 = | 18 (0.780) | coding (385/423 nt) | ihfB | integration host factor beta subunit | |||||
| * | ? | AM260479 | = 982724 | 12 (0.470) | 4 (0.170) +ATGTCT |
3/192 | 2.1 | 28.8% | coding (327/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family |
| ? | AM260479 | 982748 = | 9 (0.360) | coding (303/909 nt) | h16_A0889 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | = 1191335 | 7 (0.280) | 4 (0.160) +TGG |
3/198 | 2.2 | 30.3% | intergenic (‑17/+51) | h16_A1094/h16_A1095 | Hypothetical protein/Hypothetical protein |
| ? | AM260479 | = 1191425 | 12 (0.470) | coding (351/390 nt) | h16_A1095 | Hypothetical protein | |||||
| * | ? | AM260479 | = 1213915 | 12 (0.470) | 4 (0.180) | 4/188 | 1.6 | 22.2% | coding (257/990 nt) | h16_A1115 | probable extra‑cytoplasmic solute receptor |
| ? | AM260480 | 409851 = | 17 (0.840) | coding (47/975 nt) | h16_B0363 | probable extra‑cytoplasmic solute receptor | |||||
| * | ? | AM260479 | = 1417204 | 11 (0.430) | 3 (0.130) | 3/186 | 2.1 | 21.4% | coding (243/963 nt) | h16_A1303 | ABC‑type transporter, ATPase component: PepT family |
| ? | AM260479 | = 1417218 | 12 (0.520) | coding (257/963 nt) | h16_A1303 | ABC‑type transporter, ATPase component: PepT family | |||||
| * | ? | AM260479 | = 1475922 | 13 (0.510) | 4 (0.170) | 4/190 | 1.8 | 24.9% | coding (820/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family |
| ? | AM260479 | = 1475944 | 12 (0.510) | coding (842/939 nt) | h16_A1362 | transcriptional regulator, LysR‑family | |||||
| * | ? | AM260479 | 2042478 = | 13 (0.510) | 4 (0.160) | 4/202 | 1.9 | 25.9% | coding (224/2805 nt) | mnhAB | Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits |
| ? | AM260479 | = 2042956 | 10 (0.400) | intergenic (‑255/‑384) | mnhAB/h16_A1882 | Multisubunit Na+/H+ antiporter, MnhA and MhnB subunits/Asp‑tRNA Asn / Glu‑tRNA Gln amidotransferase A subunit or related amidase | |||||
| * | ? | AM260479 | 2269737 = | 16 (0.630) | 4 (0.170) | 4/186 | 1.8 | 23.1% | coding (1148/1386 nt) | h16_A2086 | Amidase |
| ? | AM260479 | 2269768 = | 12 (0.520) | coding (1179/1386 nt) | h16_A2086 | Amidase | |||||
| * | ? | AM260479 | 2274515 = | 19 (0.750) | 6 (0.260) | 5/186 | 1.6 | 31.3% | coding (1610/1770 nt) | h16_A2092 | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain |
| ? | AM260479 | 2274595 = | 9 (0.390) | coding (1530/1770 nt) | h16_A2092 | Lysophospholipase, contains weak SAM‑dependent methyltransferase domain | |||||
| * | ? | AM260479 | 2538231 = | 15 (0.590) | 4 (0.170) | 4/192 | 1.8 | 23.4% | coding (552/900 nt) | h16_A2338 | conserved hypothetical protein |
| ? | AM260479 | 2538284 = | 12 (0.500) | coding (499/900 nt) | h16_A2338 | conserved hypothetical protein | |||||
| * | ? | AM260479 | 2549508 = | 15 (0.590) | 4 (0.170) | 4/194 | 1.8 | 22.1% | coding (756/957 nt) | tal | Transaldolase |
| ? | AM260479 | 2549558 = | 14 (0.580) | coding (806/957 nt) | tal | Transaldolase | |||||
| * | ? | AM260479 | = 3025466 | 11 (0.430) | 4 (0.170) | 4/194 | 1.8 | 32.7% | coding (556/579 nt) | h16_A2798 | conserved hypothetical protein |
| ? | AM260479 | = 3025492 | 6 (0.250) | intergenic (+3/+13) | h16_A2798/h16_A2799 | conserved hypothetical protein/Dinucleotide‑utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 | |||||
| * | ? | AM260479 | = 3099949 | 15 (0.590) | 5 (0.210) | 4/188 | 1.8 | 28.7% | coding (587/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component |
| ? | AM260479 | 3100058 = | 11 (0.470) | coding (696/1113 nt) | acrA5 | Cation/multidrug efflux system, mebrane‑fusion component | |||||
| * | ? | AM260479 | = 3178510 | 14 (0.550) | 4 (0.170) | 4/186 | 1.8 | 27.8% | coding (169/591 nt) | h16_A2941 | conserved hypothetical protein |
| ? | AM260479 | = 3178559 | 8 (0.350) | coding (120/591 nt) | h16_A2941 | conserved hypothetical protein | |||||
| * | ? | AM260479 | = 3257320 | 26 (1.030) | 4 (0.200) | 4/164 | 1.6 | 22.3% | coding (1345/1626 nt) | asdA | L‑Aspartate decarboxylase |
| ? | AM260479 | = 3257300 | 7 (0.340) | coding (1325/1626 nt) | asdA | L‑Aspartate decarboxylase | |||||
| * | ? | AM260479 | = 3596842 | 9 (0.360) | 4 (0.170) | 4/188 | 1.8 | 31.6% | coding (128/279 nt) | acyP | Acylphosphatase |
| ? | AM260479 | = 3596844 | 9 (0.390) | coding (126/279 nt) | acyP | Acylphosphatase | |||||
| * | ? | AM260479 | 3753484 = | 7 (0.280) | 5 (0.220) | 5/186 | 1.6 | 41.0% | coding (254/501 nt) | h16_A3485 | putative flavin reductase |
| ? | AM260479 | 3753521 = | 8 (0.350) | coding (217/501 nt) | h16_A3485 | putative flavin reductase | |||||
| * | ? | AM260479 | = 3787147 | 30 (1.190) | 8 (0.360) | 6/180 | 1.3 | 22.7% | coding (821/1674 nt) | h16_A3514 | Long‑chain‑fatty‑acid‑CoA ligase |
| ? | AM260479 | = 3787178 | 28 (1.250) | coding (852/1674 nt) | h16_A3514 | Long‑chain‑fatty‑acid‑CoA ligase | |||||
| * | ? | AM260479 | 3906712 = | 13 (0.510) | 4 (0.170) | 4/190 | 1.8 | 23.5% | coding (2666/3966 nt) | putA | bifunctional proline dehydrogenase and proline oxidase |
| ? | AM260479 | 3906752 = | 14 (0.590) | coding (2626/3966 nt) | putA | bifunctional proline dehydrogenase and proline oxidase | |||||
| * | ? | AM260480 | = 780293 | 13 (0.590) | 3 (0.150) | 3/188 | 1.8 | 22.2% | coding (194/1173 nt) | h16_B0694 | transcriptional regulator, AraC‑family |
| ? | AM260480 | = 780337 | 9 (0.440) | coding (150/1173 nt) | h16_B0694 | transcriptional regulator, AraC‑family | |||||
| * | ? | AM260480 | = 1179700 | 7 (0.320) | 3 (0.150) | 3/188 | 1.8 | 26.7% | coding (961/1206 nt) | h16_B1043 | conserved hypothetical protein |
| ? | AM260480 | = 1179725 | 10 (0.490) | coding (986/1206 nt) | h16_B1043 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 1197838 | 9 (0.410) | 4 (0.200) | 4/186 | 1.6 | 30.5% | coding (970/1437 nt) | h16_B1061 | Nucleotidyltransferase/DNA polymerase involved in DNA repair |
| ? | AM260480 | = 1197865 | 10 (0.500) | coding (997/1437 nt) | h16_B1061 | Nucleotidyltransferase/DNA polymerase involved in DNA repair | |||||
| * | ? | AM260480 | = 1199163 | 16 (0.730) | 4 (0.200) | 4/188 | 1.6 | 25.2% | coding (862/3411 nt) | dnaE2 | DNA polymerase III alpha subunit |
| ? | AM260480 | 1199191 = | 9 (0.440) | coding (890/3411 nt) | dnaE2 | DNA polymerase III alpha subunit | |||||
| * | ? | AM260480 | = 1447185 | 12 (0.550) | 4 (0.180) | 4/202 | 1.7 | 25.1% | coding (113/726 nt) | h16_B1290 | conserved hypothetical protein |
| ? | AM260480 | 1447230 = | 12 (0.550) | coding (158/726 nt) | h16_B1290 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 1635550 | 7 (0.320) | 4 (0.200) | 4/190 | 1.6 | 37.2% | coding (845/1404 nt) | h16_B1459 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains |
| ? | AM260480 | = 1635552 | 7 (0.340) | coding (843/1404 nt) | h16_B1459 | response regulator containing sigma54 activator and Fis‑type DNA‑binding domains | |||||
| * | ? | AM260480 | 1752148 = | 6 (0.270) | 4 (0.200) | 4/188 | 1.6 | 45.6% | coding (228/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme |
| ? | AM260480 | 1752165 = | 4 (0.200) | coding (245/2271 nt) | glgB | 1,4‑Alpha‑glucan branching enzyme | |||||
| * | ? | AM260480 | 1842445 = | 9 (0.410) | 4 (0.200) | 4/184 | 1.5 | 41.9% | coding (2275/2322 nt) | h16_B1632 | conserved hypothetical protein |
| ? | AM260480 | 1842516 = | 3 (0.150) | coding (2204/2322 nt) | h16_B1632 | conserved hypothetical protein | |||||
| * | ? | AM260480 | = 2024415 | 12 (0.550) | 4 (0.200) | 4/188 | 1.6 | 24.9% | coding (1400/1479 nt) | h16_B1783 | outer membrane protein |
| ? | AM260480 | = 2024449 | 13 (0.640) | coding (1434/1479 nt) | h16_B1783 | outer membrane protein | |||||
| * | ? | AM260480 | = 2192077 | 16 (0.730) | 4 (0.180) | 4/204 | 1.7 | 20.0% | coding (368/822 nt) | h16_B1943 | putative non‑heme chloroperoxidase |
| ? | AM260480 | 2192114 = | 16 (0.730) | coding (331/822 nt) | h16_B1943 | putative non‑heme chloroperoxidase | |||||
| * | ? | AM260480 | = 2311316 | 0 (0.000) | 28 (1.230) | 24/200 | 0.1 | 100% | coding (452/462 nt) | h16_B2054 | putative transporter |
| ? | AY305378 | 436316 = | NA (NA) | noncoding (1/2 nt) | direct | target site duplication | |||||
| * | ? | AM260480 | 2311318 = | 0 (0.000) | 21 (0.940) | 17/198 | 0.3 | 100% | coding (450/462 nt) | h16_B2054 | putative transporter |
| ? | AY305378 | = 437418 | NA (NA) | noncoding (1/2 nt) | direct | target site duplication | |||||
| * | ? | AM260480 | = 2465193 | 9 (0.410) | 3 (0.150) | 3/188 | 1.8 | 22.8% | coding (1158/2637 nt) | h16_B2176 | predicted transmembrane exporter protein |
| ? | AM260480 | = 2465234 | 12 (0.590) | coding (1199/2637 nt) | h16_B2176 | predicted transmembrane exporter protein | |||||
| * | ? | AM260480 | = 2637763 | 15 (0.680) | 4 (0.200) | 4/188 | 1.6 | 23.6% | coding (1347/1575 nt) | h16_B2327 | GGDEF domain protein |
| ? | AM260480 | = 2637780 | 12 (0.590) | coding (1364/1575 nt) | h16_B2327 | GGDEF domain protein | |||||
| * | ? | AM260480 | = 2714076 | 9 (0.410) | 4 (0.200) | 4/186 | 1.6 | 31.7% | coding (282/756 nt) | h16_B2404 | hypothetical membrane spanning protein |
| ? | AM260480 | = 2714093 | 9 (0.450) | coding (265/756 nt) | h16_B2404 | hypothetical membrane spanning protein | |||||
| * | ? | AM260480 | = 2899943 | 15 (0.680) | 3 (0.150) | 3/186 | 1.8 | 20.2% | coding (553/1281 nt) | h16_B2569 | Putative MFS transporter |
| ? | AM260480 | = 2899965 | 10 (0.500) | coding (531/1281 nt) | h16_B2569 | Putative MFS transporter | |||||
| * | ? | AY305378 | = 40663 | NA (NA) | 39 (1.610) | 25/204 | 0.1 | 95.1% | noncoding (43/43 nt) | inverted | repeat region |
| ? | AY305378 | 450595 = | 2 (0.080) | intergenic (‑72/–) | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– | |||||
| * | ? | AY305378 | = 94337 | NA (NA) | 24 (0.990) | 23/204 | 0.2 | 100% | noncoding (1313/1313 nt) | ISAE1 | repeat region |
| ? | AY305378 | = 450602 | 0 (0.000) | intergenic (‑79/–) | cbbLp/– | ribulose‑1,5‑bisphosphate carboxylase/oxygenase large subunit/– | |||||
| * | ? | AY305378 | = 242209 | 22 (0.910) | 5 (0.230) | 5/186 | 1.5 | 20.8% | intergenic (‑124/+142) | PHG224/PHG225 | hypothetical protein/conserved hypothetical protein |
| ? | AY305378 | = 242219 | 18 (0.810) | intergenic (‑134/+132) | PHG224/PHG225 | hypothetical protein/conserved hypothetical protein | |||||