mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 87,793 | A→C | 13.8% | E146A (GAG→GCG) | ilvH → | acetolactate synthase 3, small subunit, valine‑sensitive |
| RA | 120,158:1 | +A | 5.9% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 125,817 | A→G | 7.6% | K41K (AAA→AAG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 125,820 | C→T | 8.1% | A42A (GCC→GCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,093 | T→C | 7.2% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,126 | G→A | 7.4% | K144K (AAG→AAA) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 129,802 | T→G | 12.2% | K487Q (AAG→CAG) | yacH ← | DUF3300 family protein |
| RA | 129,811 | T→G | 14.4% | T484P (ACT→CCT) | yacH ← | DUF3300 family protein |
| RA | 181,274 | C→G | 6.1% | H131D (CAC→GAC) ‡ | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,276 | C→G | 6.3% | H131Q (CAC→CAG) ‡ | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 216,073 | T→A | 5.2% | intergenic (+94/+106) | nlpE → / ← yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| RA | 216,074 | T→A | 5.0% | intergenic (+95/+105) | nlpE → / ← yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| RA | 216,081 | C→T | 5.1% | intergenic (+102/+98) | nlpE → / ← yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| RA | 222,958 | Δ1 bp | 100% | coding (126/576 nt) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 265,573 | G→A | 5.5% | intergenic (‑30/+47) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,578 | C→T | 5.3% | intergenic (‑35/+42) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,579 | T→A | 7.1% | intergenic (‑36/+41) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,582 | T→A | 6.3% | intergenic (‑39/+38) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,583 | A→G | 6.4% | intergenic (‑40/+37) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,588 | T→C | 5.0% | intergenic (‑45/+32) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 290,247 | A→G | 6.0% | F20S (TTC→TCC) | argF ← | ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 304,790 | T→G | 5.5% | E139A (GAG→GCG) | ecpE ← | ECP production pilus chaperone |
| RA | 329,493 | G→A | 5.1% | D11N (GAC→AAC) | betT → | choline transporter of high affinity |
| RA | 329,512 | T→A | 5.6% | V17E (GTG→GAG) | betT → | choline transporter of high affinity |
| RA | 361,220 | A→C | 6.5% | intergenic (+74/+29) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| RA | 361,223 | G→T | 7.0% | intergenic (+77/+26) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| RA | 361,224 | C→G | 6.0% | intergenic (+78/+25) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| RA | 381,302 | A→T | 7.1% | intergenic (‑42/‑49) | yaiX ← / → insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| RA | 429,554 | A→T | 5.6% | Y17F (TAT→TTT) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 475,971 | C→G | 6.7% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 6.4% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 558,385 | T→G | 6.9% | R58R (CGT→CGG) | sfmA → | FimA homolog, function unknown |
| RA | 558,386 | A→T | 6.9% | T59S (ACC→TCC) ‡ | sfmA → | FimA homolog, function unknown |
| RA | 558,387 | C→A | 7.4% | T59N (ACC→AAC) ‡ | sfmA → | FimA homolog, function unknown |
| RA | 561,688 | G→A | 6.7% | T664T (ACG→ACA) | sfmD → | putative outer membrane export usher protein |
| RA | 603,393 | T→A | 5.2% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 824,572 | T→A | 6.2% | intergenic (‑75/‑58) | ybhP ← / → ybhQ | endo/exonuclease/phosphatase family protein/inner membrane protein |
| RA | 857,578 | C→G | 5.7% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 866,388 | A→T | 6.0% | intergenic (‑24/‑180) | moeA ← / → iaaA | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein/Isoaspartyl peptidase |
| RA | 942,080 | C→T | 5.7% | I374I (ATC→ATT) | dmsA → | dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 985,853 | C→T | 6.3% | intergenic (‑144/+41) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,854 | A→T | 5.6% | intergenic (‑145/+40) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,855 | A→T | 7.3% | intergenic (‑146/+39) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 985,856 | A→G | 6.3% | intergenic (‑147/+38) | aspC ← / ← ompF | aspartate aminotransferase, PLP‑dependent/outer membrane porin 1a (Ia;b;F) |
| RA | 1,030,081 | A→G | 6.0% | I6M (ATA→ATG) | yccX → | weak acylphosphatase |
| RA | 1,088,633 | C→T | 5.4% | D409N (GAT→AAT) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,134,668 | T→A | 6.9% | intergenic (+111/‑61) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,147,980 | G→T | 7.6% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 7.6% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 7.3% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 7.6% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,159,335 | G→T | 6.0% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 5.6% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 5.7% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 6.4% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 5.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,232,481 | C→T | 5.8% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 5.7% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,286,793 | A→G | 8.2% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,344,033 | A→G | 7.5% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 7.3% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 7.3% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,429,021 | T→A | 7.6% | intergenic (+37/‑28) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,703,251 | A→T | 6.0% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,747,155 | G→T | 14.8% | A9S (GCC→TCC) | ydhS → | putative oxidoreductase |
| RA | 1,823,335 | G→C | 7.0% | intergenic (+50/‑180) | nadE → / → cho | NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair |
| RA | 1,823,338 | G→C | 6.3% | intergenic (+53/‑177) | nadE → / → cho | NAD synthetase, NH3/glutamine‑dependent/endonuclease of nucleotide excision repair |
| RA | 1,856,333 | T→G | 7.0% | E199A (GAG→GCG) | ydjH ← | putative kinase |
| RA | 1,892,358 | C→T | 6.1% | G293D (GGT→GAT) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,892,363 | A→G | 6.4% | Y291Y (TAT→TAC) | yoaA ← | putative ATP‑dependent helicase, DinG family |
| RA | 1,906,229 | T→G | 5.3% | I181S (ATC→AGC) | mntP → | putative Mn(2+) efflux pump, mntR‑regulated |
| RA | 1,932,095 | T→A | 5.3% | intergenic (+36/+20) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,096 | C→G | 5.5% | intergenic (+37/+19) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,966,023 | A→T | 6.2% | S57T (TCG→ACG) | flhB ← | flagellin export apparatus, substrate specificity protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,993,582 | G→A | 5.9% | T375T (ACC→ACT) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 1,996,373 | T→A | 6.3% | M154L (ATG→TTG) | sdiA ← | quorum‑sensing transcriptional activator |
| RA | 1,996,376 | T→A | 5.4% | K153* (AAA→TAA) | sdiA ← | quorum‑sensing transcriptional activator |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,081,688 | A→T | 9.2% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,126,155 | A→T | 5.1% | I23N (ATT→AAT) | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,126,158 | A→T | 5.8% | F22Y (TTT→TAT) | wcaH ← | GDP‑mannose mannosyl hydrolase |
| RA | 2,165,264 | A→G | 5.5% | T26A (ACT→GCT) ‡ | yegP → | UPF0339 family protein |
| RA | 2,165,265 | C→A | 5.8% | T26N (ACT→AAT) ‡ | yegP → | UPF0339 family protein |
| RA | 2,165,269 | C→T | 5.6% | I27I (ATC→ATT) | yegP → | UPF0339 family protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,242,571 | T→A | 5.8% | N133Y (AAT→TAT) | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,272,016 | T→A | 6.0% | F431I (TTT→ATT) | rtn → | resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,311,616 | C→T | 5.2% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 5.1% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,354,318 | C→T | 5.7% | G18G (GGC→GGT) | glpB → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase membrane anchor subunit |
| RA | 2,357,653 | A→G | 8.9% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| RA | 2,357,665 | G→A | 7.7% | G254G (GGG→GGA) | yfaD → | transposase_31 family protein |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,399,842 | C→A | 5.7% | E108D (GAG→GAT) | nuoG ← | NADH:ubiquinone oxidoreductase, chain G |
| RA | 2,462,677 | A→T | 5.5% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,503,519 | C→T | 5.7% | A323T (GCC→ACC) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,522 | A→G | 5.8% | Y322H (TAT→CAT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,523 | A→C | 6.8% | R321R (CGT→CGG) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,561,205 | A→T | 5.7% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,596,878:1 | +G | 5.1% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,691,171 | T→A | 5.9% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,700,862 | G→A | 5.8% | P46L (CCG→CTG) | acpS ← | holo‑[acyl‑carrier‑protein] synthase 1 |
| RA | 2,731,581 | G→T | 8.5% | intergenic (‑424/+19) | rrsG ← / ← clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone |
| RA | 2,754,944 | A→G | 6.6% | N17D (AAC→GAC) ‡ | smpB → | tmRNA‑binding trans‑translation protein |
| RA | 2,754,945 | A→T | 6.7% | N17I (AAC→ATC) ‡ | smpB → | tmRNA‑binding trans‑translation protein |
| RA | 2,754,946 | C→T | 6.5% | N17N (AAC→AAT) ‡ | smpB → | tmRNA‑binding trans‑translation protein |
| RA | 2,768,609 | T→C | 9.7% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 10.4% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 9.0% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 8.3% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,801,056 | A→T | 6.1% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,802,654 | A→T | 5.1% | E436V (GAG→GTG) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,804,528 | C→A | 11.9% | intergenic (+67/‑287) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,842,438 | A→C | 5.4% | intergenic (+24/+135) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,904,212 | G→A | 100% | intergenic (+838/+535) | ygcE → / ← queE | putative kinase/7‑carboxy‑7‑deazaguanine synthase; queosine biosynthesis |
| RA | 2,906,609 | G→C | 5.1% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,960,928 | C→G | 6.0% | G501R (GGC→CGC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,930 | G→C | 5.2% | S500C (TCC→TGC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,962,963 | G→C | 5.3% | T65R (ACG→AGG) ‡ | ygdB ← | DUF2509 family protein |
| RA | 2,962,964 | T→G | 7.2% | T65P (ACG→CCG) ‡ | ygdB ← | DUF2509 family protein |
| RA | 2,962,966 | T→A | 5.7% | Q64L (CAG→CTG) | ygdB ← | DUF2509 family protein |
| RA | 2,976,321 | C→A | 6.5% | noncoding (65/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 3,059,703 | A→T | 6.2% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 6.0% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,061,817 | G→C | 7.7% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 8.3% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,066,310 | A→T | 5.2% | H288Q (CAT→CAA) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,092,774:1 | +A | 7.8% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,092,779 | Δ1 bp | 7.8% | coding (902/951 nt) | gshB → | glutathione synthetase |
| RA | 3,139,639 | T→G | 5.1% | intergenic (+46/+77) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,156,591 | T→G | 6.2% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,181,298 | A→T | 5.4% | H293L (CAT→CTT) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,234,507 | A→T | 5.9% | intergenic (‑52/+232) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,250,989 | G→C | 7.9% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.4% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 7.7% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,324,952 | A→G | 5.5% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.7% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 5.6% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 5.5% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,368,982 | G→C | 7.5% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,390,512 | A→G | 5.2% | intergenic (+63/+71) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,390,517 | A→T | 5.5% | intergenic (+68/+66) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,390,518 | A→T | 5.3% | intergenic (+69/+65) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,390,519 | A→T | 5.1% | intergenic (+70/+64) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,390,524 | C→T | 5.4% | intergenic (+75/+59) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,407,293 | T→A | 6.1% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,423,540 | A→G | 7.5% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,469,041 | A→G | 5.9% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,469,050 | G→A | 5.8% | N268N (AAC→AAT) | chiA ← | periplasmic endochitinase |
| RA | 3,544,689 | A→T | 5.4% | R52R (CGT→CGA) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,548,507 | A→G | 6.2% | F522L (TTC→CTC) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,570,878 | A→G | 7.1% | W148R (TGG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,880 | G→C | 7.2% | P147R (CCG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,884 | T→C | 7.3% | T146A (ACG→GCG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,885 | G→A | 7.4% | R145R (CGC→CGT) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,889 | G→C | 7.3% | P144R (CCG→CGG) | glgX ← | glycogen debranching enzyme |
| RA | 3,570,891 | C→T | 7.7% | P143P (CCG→CCA) | glgX ← | glycogen debranching enzyme |
| RA | 3,642,358 | T→A | 5.5% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,798,234 | A→T | 5.2% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 5.1% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,809,354 | A→G | 5.8% | E272G (GAA→GGA) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| JC | 3,815,859 | Δ82 bp | 35.8% | [rph]–[rph] | [rph], [rph] | |
| JC | 3,815,899 | Δ8 bp | 19.8% | pseudogene (644‑651/669 nt) | rph ← | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,891,502 | C→G | 5.1% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 5.3% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,897,613 | G→A | 7.2% | P36P (CCG→CCA) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,614 | C→G | 6.4% | L37V (CTG→GTG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,615 | T→C | 6.4% | L37P (CTG→CCG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,915,514 | C→T | 6.1% | intergenic (‑314/+39) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,915,519 | T→A | 6.0% | intergenic (‑319/+34) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,915,520 | T→A | 5.6% | intergenic (‑320/+33) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,959,515 | T→A | 6.9% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,924 | A→T | 5.1% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,969,429 | A→C | 5.8% | K133N (AAA→AAC) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,969,434 | A→C | 5.8% | D135A (GAT→GCT) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,969,436 | G→T | 5.5% | A136S (GCG→TCG) | wzzE → | Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein |
| RA | 3,998,147 | C→A | 5.3% | Y55* (TAC→TAA) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,041,221 | G→A | 5.0% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,056,038 | T→G | 8.1% | D101A (GAC→GCC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,118,829 | T→C | 5.2% | intergenic (+69/+16) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,118,830 | G→A | 5.1% | intergenic (+70/+15) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,118,831 | C→A | 5.4% | intergenic (+71/+14) | zapB → / ← rraA | FtsZ stabilizer, septal ring assembly factor, cell division stimulator/ribonuclease E (RNase E) inhibitor protein |
| RA | 4,148,049 | C→G | 5.1% | G90A (GGC→GCC) | yijO ← | AraC family putative transcriptional activator |
| JC | 4,183,399 | Δ3 bp | 9.4% | coding (2155‑2157/4029 nt) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,193,286 | G→C | 5.8% | D97E (GAC→GAG) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
| RA | 4,277,223 | A→T | 6.3% | I54N (ATT→AAT) | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,277,225 | G→A | 5.7% | Y53Y (TAC→TAT) ‡ | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,277,226 | T→C | 5.9% | Y53C (TAC→TGC) ‡ | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,296,060 | C→T | 38.9% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,196 | A→C | 6.6% | intergenic (‑71/+23) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,317,985 | T→A | 5.2% | intergenic (‑90/+21) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,326,058 | G→A | 7.6% | intergenic (‑317/+341) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,059 | C→A | 6.7% | intergenic (‑318/+340) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,065 | A→T | 8.8% | intergenic (‑324/+334) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,066 | A→T | 6.5% | intergenic (‑325/+333) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,072 | T→G | 7.6% | intergenic (‑331/+327) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,326,073 | T→C | 7.3% | intergenic (‑332/+326) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,339,802 | A→G | 5.4% | A240A (GCT→GCC) | adiA ← | arginine decarboxylase |
| RA | 4,339,805 | C→T | 5.3% | Q239Q (CAG→CAA) | adiA ← | arginine decarboxylase |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,470,958 | G→T | 5.7% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,476,080 | G→T | 6.7% | G215V (GGG→GTG) | yjgL → | SopA‑central‑domain‑like hexapeptide repeat protein |
| RA | 4,484,461 | A→C | 5.7% | A497A (GCT→GCG) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
| RA | 4,499,885 | C→G | 5.1% | pseudogene (650/942 nt) | yjgX ← | pseudogene fragment |
| RA | 4,499,887 | G→C | 5.0% | pseudogene (648/942 nt) | yjgX ← | pseudogene fragment |
| RA | 4,520,500 | Δ1 bp | 5.3% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 5.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,593,431 | A→G | 5.2% | V431A (GTC→GCC) | lgoT ← | putative L‑galactonate:H+ symporter |
| RA | 4,593,434 | C→T | 5.4% | C430Y (TGC→TAC) | lgoT ← | putative L‑galactonate:H+ symporter |
| RA | 4,633,634 | C→T | 100% | E38K (GAG→AAG) | yjjX ← | non‑canonical purine NTP phosphatase, ITPase/XTPase |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772991 | 774198 | 1208 | 41 [38] | [38] 39 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037678 | 1039354 | 1677 | 39 [38] | [38] 39 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 1166053 | 1167428 | 1376 | 39 [38] | [37] 39 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423738–3424234 | 3424577–3424238 | 5–840 | 39 [38] | [38] 39 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 5565 = | NA (NA) | 3 (0.030) | 3/262 | NT | NA | noncoding (1/105 nt) | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 5597 = | NA (NA) | noncoding (33/105 nt) | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 16653 | NA (NA) | 7 (0.080) | 6/262 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 93199 | 93 (1.030) | 5 (0.060) | 3/266 | NT | 5.1% | coding (34/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| ? | NC_000913 | = 93223 | 96 (1.100) | coding (58/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 4 (0.050) | 4/262 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 3 (0.040) | 3/258 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 4 (0.050) | 3/268 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 6 (0.070) | 4/262 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 6 (0.070) | 5/262 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 412077 = | 103 (1.140) | 5 (0.060) | 4/260 | NT | 5.2% | coding (405/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family |
| ? | NC_000913 | 412119 = | 87 (1.020) | coding (363/1185 nt) | araJ | L‑arabinose‑inducible putative transporter, MFS family | |||||
| * | ? | NC_000913 | = 521828 | 87 (0.960) | 5 (0.060) | 5/258 | NT | 5.5% | coding (1413/2415 nt) | ybbP | putative ABC transporter permease |
| ? | NC_000913 | = 521858 | 90 (1.060) | coding (1443/2415 nt) | ybbP | putative ABC transporter permease | |||||
| * | ? | NC_000913 | = 535514 | 85 (0.940) | 5 (0.060) | 5/252 | NT | 5.8% | coding (1599/1782 nt) | gcl | glyoxylate carboligase |
| ? | NC_000913 | = 535539 | 86 (1.040) | coding (1624/1782 nt) | gcl | glyoxylate carboligase | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 3 (0.030) | 3/266 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 864470 = | 110 (1.210) | 6 (0.070) | 4/264 | NT | 5.6% | coding (660/750 nt) | moeB | molybdopterin synthase sulfurylase |
| ? | NC_000913 | 864498 = | 97 (1.120) | coding (632/750 nt) | moeB | molybdopterin synthase sulfurylase | |||||
| * | ? | NC_000913 | 1207790 = | 27 (0.300) | 21 (0.260) | 19/244 | NT | 49.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 19 (0.240) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 24 (0.270) | 41 (0.510) | 35/244 | NT | 67.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 19 (0.240) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 129 (1.470) | 100/268 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1440443 | 90 (0.990) | 6 (0.070) | 5/262 | NT | 6.6% | coding (342/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase |
| ? | NC_000913 | = 1440464 | 85 (0.990) | coding (321/3525 nt) | pfo | pyruvate‑flavodoxin oxidoreductase | |||||
| * | ? | NC_000913 | = 1484967 | 69 (0.760) | 4 (0.050) | 4/258 | NT | 5.7% | coding (1907/3903 nt) | hrpA | putative ATP‑dependent helicase |
| ? | NC_000913 | = 1484972 | 69 (0.820) | coding (1912/3903 nt) | hrpA | putative ATP‑dependent helicase | |||||
| * | ? | NC_000913 | = 1553950 | 76 (0.840) | 5 (0.060) | 5/258 | NT | 6.6% | intergenic (‑112/+22) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme |
| ? | NC_000913 | = 1553956 | 71 (0.840) | intergenic (‑118/+16) | adhP/maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme | |||||
| * | ? | NC_000913 | 1841735 = | 72 (0.800) | 4 (0.050) | 3/264 | NT | 5.2% | coding (246/408 nt) | nudG | CTP pyrophosphohydrolase; also hydrolyzes 2‑hydroxy‑dATP, 8‑hydroxy‑dGTP, 5‑hydroxy‑CTP, dCTP and 5‑methyl‑dCTP |
| ? | NC_000913 | 1841775 = | 77 (0.890) | coding (286/408 nt) | nudG | CTP pyrophosphohydrolase; also hydrolyzes 2‑hydroxy‑dATP, 8‑hydroxy‑dGTP, 5‑hydroxy‑CTP, dCTP and 5‑methyl‑dCTP | |||||
| * | ? | NC_000913 | = 1909276 | 82 (0.910) | 5 (0.060) | 4/254 | NT | 6.0% | intergenic (+112/+32) | yobH/kdgR | uncharacterized protein/KDG regulon transcriptional repressor |
| ? | NC_000913 | = 1909289 | 80 (0.960) | intergenic (+125/+19) | yobH/kdgR | uncharacterized protein/KDG regulon transcriptional repressor | |||||
| * | ? | NC_000913 | = 1993087 | 64 (0.710) | 5 (0.060) | 4/266 | NT | 7.4% | coding (1620/1833 nt) | uvrC | excinuclease UvrABC, endonuclease subunit |
| ? | NC_000913 | = 1993103 | 64 (0.730) | coding (1604/1833 nt) | uvrC | excinuclease UvrABC, endonuclease subunit | |||||
| * | ? | NC_000913 | = 2021654 | 100 (1.100) | 6 (0.070) | 5/258 | NT | 6.0% | coding (151/366 nt) | fliO | flagellar biosynthesis protein |
| ? | NC_000913 | = 2021673 | 95 (1.120) | coding (170/366 nt) | fliO | flagellar biosynthesis protein | |||||
| * | ? | NC_000913 | 2250781 = | 70 (0.770) | 5 (0.060) | 4/256 | NT | 7.3% | intergenic (+15/‑59) | yeiH/nfo | UPF0324 family inner membrane protein/endonuclease IV with intrinsic 3'‑5' exonuclease activity |
| ? | NC_000913 | 2250833 = | 62 (0.740) | intergenic (+67/‑7) | yeiH/nfo | UPF0324 family inner membrane protein/endonuclease IV with intrinsic 3'‑5' exonuclease activity | |||||
| * | ? | NC_000913 | 2440343 = | NA (NA) | 3 (0.030) | 3/264 | NT | NA | noncoding (1/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2440375 = | NA (NA) | noncoding (33/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 6 (0.070) | 6/264 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3423554 | 92 (1.020) | 7 (0.080) | 6/274 | NT | 7.1% | intergenic (‑12/+26) | rrfF/thrV | 5S ribosomal RNA of rrnD operon/tRNA‑Thr |
| ? | NC_000913 | 4171603 = | NA (NA) | intergenic (+59/‑34) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 4 (0.050) | 4/264 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620363 | NA (NA) | 3 (0.030) | 3/266 | NT | 100% | coding (1172/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620412 | 0 (0.000) | coding (1221/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3700159 | 122 (1.350) | 7 (0.080) | 5/264 | NT | 5.5% | noncoding (24/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD |
| ? | NC_000913 | = 3700189 | 124 (1.430) | noncoding (54/66 nt) | rdlD | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD | |||||
| * | ? | NC_000913 | 3910443 = | NA (NA) | 4 (0.050) | 3/266 | NT | NA | noncoding (1/35 nt) | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3910474 = | NA (NA) | noncoding (32/35 nt) | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP284 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 4040481 | NA (NA) | 8 (0.090) | 6/264 | NT | 22.4% | intergenic (+58/‑36) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4040505 | 29 (0.320) | intergenic (+82/‑12) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 4166230 | 69 (0.760) | 6 (0.070) | 4/268 | NT | 7.8% | coding (803/858 nt) | murI | glutamate racemase |
| ? | NC_000913 | = 4166269 | 75 (0.850) | coding (842/858 nt) | murI | glutamate racemase | |||||
| * | ? | NC_000913 | 4284390 = | 54 (0.600) | 6 (0.070) | 5/262 | NT | 10.8% | coding (513/1650 nt) | actP | acetate transporter |
| ? | NC_000913 | 4284425 = | 48 (0.560) | coding (478/1650 nt) | actP | acetate transporter | |||||