mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 6.0% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 10,619 | G→T | 6.7% | intergenic (‑125/+24) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 10,620 | A→T | 6.7% | intergenic (‑126/+23) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 10,621 | A→T | 6.7% | intergenic (‑127/+22) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 10,622 | A→C | 6.7% | intergenic (‑128/+21) | satP ← / ← yaaW | succinate‑acetate transporter/UPF0174 family protein |
| RA | 11,127 | C→G | 5.5% | S77T (AGT→ACT) | yaaW ← | UPF0174 family protein |
| RA | 13,583 | T→G | 5.1% | V474G (GTT→GGT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 14,116 | A→G | 7.3% | intergenic (+37/‑52) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,119 | G→A | 7.7% | intergenic (+40/‑49) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,124 | T→A | 7.8% | intergenic (+45/‑44) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,129 | T→C | 7.2% | intergenic (+50/‑39) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,132 | C→T | 7.1% | intergenic (+53/‑36) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 51,907 | T→G | 6.0% | E175A (GAA→GCA) | rsmA ← | 16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM‑dependent |
| RA | 83,587 | A→C | 5.3% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 95,071 | T→C | 5.2% | V141A (GTA→GCA) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 126,075 | T→G | 7.5% | V127V (GTT→GTG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,081 | T→C | 5.4% | D129D (GAT→GAC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,093 | T→C | 6.7% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 165,038 | T→G | 5.1% | P103P (CCT→CCG) | mrcB → | fused glycosyl transferase and transpeptidase |
| RA | 169,748 | T→A | 5.7% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 6.1% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 203,393 | A→T | 6.4% | T16S (ACC→TCC) | lpxB → | tetraacyldisaccharide‑1‑P synthase |
| RA | 209,604 | T→C | 7.2% | intergenic (+24/‑75) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| RA | 209,608 | T→C | 7.1% | intergenic (+28/‑71) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| RA | 209,609 | T→G | 6.6% | intergenic (+29/‑70) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| RA | 209,610 | C→A | 8.7% | intergenic (+30/‑69) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| RA | 209,611 | G→A | 6.8% | intergenic (+31/‑68) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| RA | 209,615 | G→A | 6.9% | intergenic (+35/‑64) | accA → / → ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 265,573 | G→A | 5.4% | intergenic (‑30/+47) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,578 | C→T | 5.4% | intergenic (‑35/+42) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,579 | T→A | 7.0% | intergenic (‑36/+41) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,582 | T→A | 5.8% | intergenic (‑39/+38) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 265,588 | T→C | 5.7% | intergenic (‑45/+32) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 454,853 | T→C | 5.5% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 5.6% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 506,584 | T→C | 5.6% | intergenic (+18/+19) | ushA → / ← ybaK | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase |
| RA | 506,585 | T→A | 5.6% | intergenic (+19/+18) | ushA → / ← ybaK | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase |
| RA | 506,586 | T→A | 5.6% | intergenic (+20/+17) | ushA → / ← ybaK | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase |
| RA | 506,587 | G→A | 5.8% | intergenic (+21/+16) | ushA → / ← ybaK | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase/Cys‑tRNA(Pro)/Cys‑tRNA(Cys) deacylase |
| RA | 568,685 | T→A | 5.6% | intergenic (+38/‑217) | emrE → / → ybcK | DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase |
| RA | 568,690 | T→A | 6.4% | intergenic (+43/‑212) | emrE → / → ybcK | DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase |
| RA | 568,691 | T→A | 5.4% | intergenic (+44/‑211) | emrE → / → ybcK | DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase |
| RA | 568,696 | T→A | 5.4% | intergenic (+49/‑206) | emrE → / → ybcK | DLP12 prophage; multidrug resistance protein/DLP12 prophage; putative recombinase |
| RA | 595,519 | T→A | 6.3% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 6.2% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 696,782 | G→C | 11.4% | noncoding (49/75 nt) | glnW ← | tRNA‑Gln |
| RA | 696,793 | T→A | 13.0% | noncoding (38/75 nt) | glnW ← | tRNA‑Gln |
| RA | 747,895 | C→G | 6.0% | intergenic (‑126/+26) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,897 | G→C | 6.3% | intergenic (‑128/+24) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,900 | G→C | 6.7% | intergenic (‑131/+21) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 747,902 | C→G | 6.8% | intergenic (‑133/+19) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
| RA | 756,968 | C→G | 6.6% | H354Q (CAC→CAG) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 759,250 | G→T | 93.4% | R182L (CGC→CTC) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 794,938 | C→A | 6.9% | intergenic (+16/‑151) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,939 | T→C | 7.0% | intergenic (+17/‑150) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,942 | G→A | 7.1% | intergenic (+20/‑147) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,943 | T→G | 6.9% | intergenic (+21/‑146) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 850,993 | T→C | 6.0% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 5.9% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 5.6% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 6.0% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 869,724 | A→C | 5.2% | N105T (AAC→ACC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 935,584 | A→T | 12.5% | P787P (CCA→CCT) | ftsK → | DNA translocase at septal ring sorting daughter chromsomes |
| RA | 1,052,257 | C→T | 6.0% | intergenic (+17/+32) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,260 | T→C | 5.8% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 5.6% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 5.7% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,104,931 | G→T | 6.5% | intergenic (+29/‑30) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,932 | C→T | 5.4% | intergenic (+30/‑29) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,933 | A→G | 5.3% | intergenic (+31/‑28) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,104,934 | A→C | 5.4% | intergenic (+32/‑27) | csgA → / → csgC | curlin subunit, amyloid curli fibers, cryptic/curli assembly protein |
| RA | 1,129,394 | G→C | 5.4% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,211,610 | A→G | 6.9% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 6.7% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 6.6% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,232,481 | C→T | 6.8% | intergenic (+27/+19) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,232,484 | A→G | 6.9% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,286,793 | A→G | 11.9% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,965 | A→G | 16.4% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,974 | C→T | 11.7% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,324,837 | A→C | 5.7% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 6.0% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 6.2% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,351,228 | G→C | 5.5% | intergenic (‑189/+179) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase, NADH‑dependent/DUF559 family endonuclease‑related protein |
| RA | 1,462,028 | G→A | 5.3% | G379D (GGT→GAT) | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,517,055 | C→A | 5.3% | intergenic (+53/+44) | patD → / ← yncL | gamma‑aminobutyraldehyde dehydrogenase/stress‑induced small inner membrane enterobacterial protein |
| RA | 1,534,904 | T→G | 5.3% | intergenic (+35/+61) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,536,867 | T→A | 5.2% | Y148F (TAC→TTC) ‡ | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,868 | A→G | 5.8% | Y148H (TAC→CAC) ‡ | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,869 | C→G | 5.7% | W147C (TGG→TGC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,873 | G→C | 5.9% | P146R (CCG→CGG) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,877 | C→G | 6.0% | A145P (GCA→CCA) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,878 | C→T | 5.9% | E144E (GAG→GAA) ‡ | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,536,879 | T→A | 5.5% | E144V (GAG→GTG) ‡ | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,552,191 | C→A | 16.5% | intergenic (+200/+207) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,263 | G→T | 6.3% | intergenic (+272/+135) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,555,781 | G→C | 6.5% | intergenic (‑112/+45) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,555,782 | C→T | 6.2% | intergenic (‑113/+44) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,555,783 | A→G | 5.9% | intergenic (‑114/+43) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,555,784 | G→C | 6.1% | intergenic (‑115/+42) | maeA ← / ← sra | malate dehydrogenase, decarboxylating, NAD‑requiring; malic enzyme/stationary‑phase‑induced ribosome‑associated protein |
| RA | 1,560,199 | A→C | 5.0% | L244W (TTG→TGG) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,560,207 | G→T | 5.1% | A241A (GCC→GCA) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,568,915 | G→A | 5.0% | intergenic (‑92/+39) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,602,236 | A→T | 5.7% | Q249H (CAA→CAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,239 | A→T | 7.3% | K250N (AAA→AAT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,602,242 | A→T | 6.2% | L251F (TTA→TTT) | lsrA → | autoinducer 2 import ATP‑binding protein |
| RA | 1,603,724 | A→C | 7.8% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,629,435 | G→A | 7.1% | intergenic (+17/+18) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,436 | A→T | 6.7% | intergenic (+18/+17) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,437 | T→C | 7.1% | intergenic (+19/+16) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,703,251 | A→T | 5.2% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 6.8% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,708,751 | A→G | 20.4% | E611E (GAA→GAG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,720,364 | G→T | 7.5% | intergenic (+21/+26) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,720,366 | T→A | 9.1% | intergenic (+23/+24) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,720,367 | A→C | 5.5% | intergenic (+24/+23) | slyB → / ← slyA | outer membrane lipoprotein/global transcriptional regulator |
| RA | 1,747,149 | G→T | 9.9% | V7L (GTG→TTG) | ydhS → | putative oxidoreductase |
| RA | 1,764,687 | T→C | 5.9% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 5.8% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 5.8% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 7.4% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 5.6% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,807,319 | T→C | 5.2% | intergenic (+20/‑81) | pfkB → / → ydiZ | 6‑phosphofructokinase II/uncharacterized protein |
| RA | 1,822,071 | G→A | 6.6% | I62I (ATC→ATT) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,822,072 | A→T | 7.1% | I62N (ATC→AAC) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,822,073 | T→C | 6.7% | I62V (ATC→GTC) ‡ | osmE ← | osmotically‑inducible lipoprotein |
| RA | 1,864,758 | G→A | 7.4% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 7.1% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 7.3% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 7.0% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,929,012 | C→T | 6.9% | intergenic (‑173/+36) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,016 | A→G | 6.0% | intergenic (‑177/+32) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,018 | A→T | 6.0% | intergenic (‑179/+30) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,020 | T→A | 6.5% | intergenic (‑181/+28) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,022 | A→T | 6.8% | intergenic (‑183/+26) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,929,024 | C→T | 5.9% | intergenic (‑185/+24) | ptrB ← / ← yebE | protease II/DUF533 family inner membrane protein |
| RA | 1,932,094 | C→G | 5.9% | intergenic (+35/+21) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,932,096 | C→G | 5.8% | intergenic (+37/+19) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase; 2‑dehydro‑3‑deoxy‑phosphogluconate/4‑hydroxy‑2‑ oxoglutarate aldolase |
| RA | 1,950,292 | C→G | 5.4% | A77A (GCG→GCC) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,295:1 | +C | 5.5% | coding (228/1773 nt) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,301 | Δ1 bp | 5.8% | coding (222/1773 nt) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,306 | C→G | 5.5% | G73R (GGC→CGC) | aspS ← | aspartyl‑tRNA synthetase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,993,949 | T→G | 9.1% | D253A (GAC→GCC) | uvrC ← | excinuclease UvrABC, endonuclease subunit |
| RA | 1,996,376 | T→A | 5.4% | K153* (AAA→TAA) | sdiA ← | quorum‑sensing transcriptional activator |
| RA | 2,009,731 | A→G | 5.7% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 5.2% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 5.5% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,057,595 | T→C | 6.1% | intergenic (+21/+432) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,597 | T→G | 6.5% | intergenic (+23/+430) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,599 | T→A | 7.6% | intergenic (+25/+428) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,601 | C→A | 8.8% | intergenic (+27/+426) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,603 | G→A | 6.7% | intergenic (+29/+424) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,113,359 | A→G | 5.1% | intergenic (‑298/+75) | rfbB ← / ← wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU |
| RA | 2,113,364 | T→A | 5.4% | intergenic (‑303/+70) | rfbB ← / ← wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU |
| RA | 2,113,368 | T→A | 5.1% | intergenic (‑307/+66) | rfbB ← / ← wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU |
| RA | 2,113,373 | C→T | 5.0% | intergenic (‑312/+61) | rfbB ← / ← wcaN | dTDP‑glucose 4,6 dehydratase, NAD(P)‑binding/putative regulatory subunit for GalU |
| RA | 2,115,847 | G→T | 5.7% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 5.6% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 8.4% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,139,710 | C→A | 5.1% | intergenic (+225/+49) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,716 | T→G | 5.5% | intergenic (+231/+43) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,718 | T→A | 6.1% | intergenic (+233/+41) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,720 | C→A | 5.2% | intergenic (+235/+39) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,726 | T→G | 5.5% | intergenic (+241/+33) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,139,727 | T→C | 5.5% | intergenic (+242/+32) | yegH → / ← asmA | inner membrane protein/suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,165,626 | T→C | 5.0% | intergenic (+105/‑42) | yegP → / → yegQ | UPF0339 family protein/putative peptidase |
| RA | 2,165,628 | A→T | 5.5% | intergenic (+107/‑40) | yegP → / → yegQ | UPF0339 family protein/putative peptidase |
| RA | 2,173,151 | C→T | 5.3% | pseudogene (212/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,153 | A→T | 6.8% | pseudogene (210/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,155 | A→G | 5.2% | pseudogene (208/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,229,322 | C→G | 5.6% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,230,415 | T→A | 5.2% | intergenic (‑30/‑209) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,230,416 | G→C | 5.8% | intergenic (‑31/‑208) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,230,417 | T→A | 6.0% | intergenic (‑32/‑207) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,242,213 | T→C | 5.6% | Q252R (CAA→CGA) | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,242,216 | A→C | 5.1% | L251R (CTG→CGG) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,242,217 | G→C | 5.2% | L251V (CTG→GTG) ‡ | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,242,218 | G→T | 5.6% | A250A (GCC→GCA) | yeiB ← | DUF418 family putative inner membrane protein |
| RA | 2,312,170 | G→C | 6.8% | L194V (CTG→GTG) | ompC ← | outer membrane porin protein C |
| RA | 2,319,581 | A→G | 6.5% | V99A (GTG→GCG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,582 | C→G | 6.3% | V99L (GTG→CTG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,585 | C→G | 6.3% | D98H (GAT→CAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,586 | C→T | 6.2% | A97A (GCG→GCA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,323,275 | T→A | 6.5% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 6.9% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 6.7% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 6.9% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 6.7% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,325,037:1 | +T | 6.3% | coding (282/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,325,042 | Δ1 bp | 6.3% | coding (287/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,356,734 | G→C | 7.6% | intergenic (+23/‑170) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,737 | T→C | 7.6% | intergenic (+26/‑167) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,738 | G→A | 7.7% | intergenic (+27/‑166) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| RA | 2,356,741 | G→C | 7.4% | intergenic (+30/‑163) | glpC → / → yfaD | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase, C subunit, 4Fe‑4S iron‑sulfur cluster/transposase_31 family protein |
| JC | 2,357,874 | Δ12 bp | 9.7% | pseudogene (71‑82/198 nt) | ypaA → | pseudogene, C‑terminal fragment, Transposase_31 family |
| RA | 2,364,998 | C→A | 5.2% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,383,956 | A→T | 5.2% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 5.3% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,405,227 | Δ1 bp | 100% | intergenic (‑155/+476) | nuoA ← / ← lrhA | NADH:ubiquinone oxidoreductase, membrane subunit A/transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,414,689 | C→G | 5.3% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,438,871 | A→T | 5.8% | N308Y (AAT→TAT) | flk → | putative flagella assembly protein |
| RA | 2,438,874 | A→T | 5.0% | M309L (ATG→TTG) | flk → | putative flagella assembly protein |
| RA | 2,477,014 | C→A | 5.4% | A206S (GCA→TCA) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,016 | T→A | 9.3% | Q205L (CAG→CTG) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,018 | T→A | 5.0% | R204S (AGA→AGT) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,020 | T→A | 6.6% | R204* (AGA→TGA) ‡ | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,477,022 | T→G | 7.0% | D203A (GAC→GCC) | dsdC ← | dsd operon activator; autorepressor |
| RA | 2,482,839 | C→G | 6.4% | L167F (TTG→TTC) | emrK ← | multidrug resistance efflux pump membrane fusion protein |
| RA | 2,503,518 | G→T | 5.0% | A323D (GCC→GAC) ‡ | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,519 | C→T | 5.0% | A323T (GCC→ACC) ‡ | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,522 | A→G | 5.6% | Y322H (TAT→CAT) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,503,523 | A→C | 5.9% | R321R (CGT→CGG) | fryA ← | putative PTS enzyme: Hpr, enzyme I and IIA components |
| RA | 2,507,106 | A→G | 5.6% | G263G (GGT→GGC) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,109 | T→G | 5.3% | A262A (GCA→GCC) ‡ | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,110 | G→C | 5.0% | A262G (GCA→GGA) ‡ | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,111 | C→A | 5.4% | A262S (GCA→TCA) ‡ | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,507,114 | C→T | 5.4% | A261T (GCC→ACC) | fryC ← | putative enzyme IIC component of PTS |
| RA | 2,512,728 | C→A | 6.0% | intergenic (‑22/‑314) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,512,729 | T→A | 5.5% | intergenic (‑23/‑313) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,512,730 | T→A | 5.5% | intergenic (‑24/‑312) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,512,731 | T→G | 5.1% | intergenic (‑25/‑311) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,525,907 | G→A | 6.2% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 6.2% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,555,201 | T→C | 5.6% | intergenic (‑19/+27) | eutR ← / ← eutK | eut operon transcriptional activator, AraC family/putative ethanol utilization carboxysome structural protein |
| RA | 2,560,996 | G→T | 21.6% | intergenic (+98/‑372) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,589,122 | G→A | 5.2% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,638,584 | A→T | 5.6% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,692 | A→T | 5.0% | intergenic (+353/‑163) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,697 | C→T | 5.3% | intergenic (+358/‑158) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,698 | A→T | 6.5% | intergenic (+359/‑157) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,673,790 | G→T | 6.0% | intergenic (+22/+26) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,791 | A→C | 5.7% | intergenic (+23/+25) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 5.3% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,798 | T→C | 5.3% | intergenic (+30/+18) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,737,711 | G→A | 5.2% | intergenic (+65/‑34) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,779,756 | T→A | 5.0% | S991C (AGC→TGC) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,800,519 | T→G | 5.9% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,804,535 | A→T | 10.1% | intergenic (+74/‑280) | nrdF → / → proV | ribonucleoside‑diphosphate reductase 2, beta subunit, ferritin‑like protein/glycine betaine/proline ABC transporter periplasmic binding protein |
| RA | 2,810,872 | C→T | 5.9% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 5.9% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 7.8% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 7.3% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,818,046 | A→G | 7.3% | intergenic (‑186/+13) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,838,222 | A→T | 8.0% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,838,231 | A→T | 8.0% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,839,321 | C→G | 6.6% | intergenic (‑57/‑203) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,323 | T→A | 7.3% | intergenic (‑59/‑201) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,324 | T→A | 6.6% | intergenic (‑60/‑200) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,839,326 | C→G | 6.8% | intergenic (‑62/‑198) | ascG ← / → ascF | asc operon transcriptional repressor; prpBC operon repressor/cellobiose/arbutin/salicin‑specific PTS enzymes, IIB and IC components |
| RA | 2,884,578 | C→A | 5.6% | R881I (AGA→ATA) | ygcB ← | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3 |
| RA | 2,906,607 | C→T | 7.2% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,608 | G→C | 7.3% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,609 | G→C | 6.9% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,926,036 | A→C | 5.4% | E230A (GAA→GCA) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,039 | A→T | 5.4% | Q231L (CAG→CTG) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,042 | G→T | 5.2% | C232F (TGC→TTC) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 3,045,124 | T→C | 7.6% | intergenic (+23/+34) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,126 | C→A | 7.7% | intergenic (+25/+32) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,127 | T→G | 8.6% | intergenic (+26/+31) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,045,129 | G→A | 7.9% | intergenic (+28/+29) | bglA → / ← ygfF | 6‑phospho‑beta‑glucosidase A/putative NAD(P)‑dependent oxidoreductase |
| RA | 3,052,886 | C→G | 5.1% | A211A (GCG→GCC) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,052,893 | G→T | 5.1% | P209Q (CCG→CAG) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,107,875 | A→G | 5.2% | I427I (ATT→ATC) | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,107,879 | G→T | 5.6% | A426D (GCT→GAT) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,107,880 | C→T | 5.3% | A426T (GCT→ACT) ‡ | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,110,399 | G→T | 6.0% | noncoding (34/76 nt) | pheV → | tRNA‑Phe |
| RA | 3,110,400 | A→T | 5.4% | noncoding (35/76 nt) | pheV → | tRNA‑Phe |
| RA | 3,110,401 | A→C | 6.0% | noncoding (36/76 nt) | pheV → | tRNA‑Phe |
| RA | 3,156,590 | C→A | 5.2% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 5.5% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,250,989 | G→C | 5.6% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 5.4% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,316,890 | C→G | 7.7% | V213L (GTG→CTG) | nusA ← | transcription termination/antitermination L factor |
| RA | 3,324,952 | A→G | 6.5% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 6.5% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 6.5% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 6.6% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,334,704 | G→C | 7.3% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 5.1% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,350,682:1 | +A | 5.3% | noncoding (106/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,354,537 | C→G | 5.7% | intergenic (‑487/‑188) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,407,295 | T→A | 5.9% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,423,620 | A→G | 6.0% | noncoding (36/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,621 | C→G | 6.1% | noncoding (35/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,622 | C→T | 6.0% | noncoding (34/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,424,646 | C→A | 5.2% | noncoding (2138/2904 nt) | rrlD ← | 23S ribosomal RNA of rrnD operon |
| RA | 3,448,275 | T→G | 5.5% | intergenic (‑126/+39) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,276 | T→A | 5.5% | intergenic (‑127/+38) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,277 | T→A | 5.9% | intergenic (‑128/+37) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,448,278 | C→A | 5.3% | intergenic (‑129/+36) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,458,110 | C→A | 100% | T578T (ACC→ACA) | gspD → | general secretory pathway component, cryptic |
| RA | 3,482,325 | G→A | 100% | R346H (CGC→CAC) | yheS → | ABC‑F family protein predicted regulatory ATPase |
| RA | 3,510,357 | G→T | 5.9% | P207Q (CCG→CAG) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
| RA | 3,515,785 | G→T | 6.1% | L43L (CTC→CTA) ‡ | dam ← | DNA adenine methyltransferase |
| RA | 3,515,786 | A→C | 5.5% | L43R (CTC→CGC) ‡ | dam ← | DNA adenine methyltransferase |
| RA | 3,515,787 | G→T | 7.7% | L43I (CTC→ATC) ‡ | dam ← | DNA adenine methyltransferase |
| RA | 3,515,788 | A→C | 5.9% | F42L (TTT→TTG) | dam ← | DNA adenine methyltransferase |
| RA | 3,525,436 | T→C | 5.2% | intergenic (+13/+153) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,525,437 | T→G | 5.2% | intergenic (+14/+152) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,525,439 | G→A | 5.9% | intergenic (+16/+150) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,530,671 | A→C | 7.6% | intergenic (+19/+44) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,672 | G→C | 7.9% | intergenic (+20/+43) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,673 | G→C | 7.3% | intergenic (+21/+42) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,674 | G→T | 8.2% | intergenic (+22/+41) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,537,323 | T→A | 5.8% | intergenic (+35/‑62) | greB → / → yhgF | transcript cleavage factor/putative transcriptional accessory protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,613,178 | C→G | 5.3% | N70K (AAC→AAG) | acpT → | 4'‑phosphopantetheinyl transferase |
| RA | 3,636,008 | G→T | 5.0% | intergenic (+115/+200) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| RA | 3,636,747 | T→C | 5.8% | T222A (ACC→GCC) | yhiN ← | putative oxidoreductase |
| RA | 3,648,128 | G→T | 6.1% | noncoding (66/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,129 | C→T | 5.6% | noncoding (67/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,130 | A→T | 5.4% | noncoding (68/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,131 | A→G | 5.4% | noncoding (69/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,648,132 | A→C | 5.4% | noncoding (70/84 nt) | agrA → | inactive antisense sRNA |
| RA | 3,657,601 | G→C | 5.4% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 5.3% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,663,547 | T→C | 6.5% | intergenic (+20/+343) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,553 | A→C | 6.2% | intergenic (+26/+337) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,555 | G→T | 6.3% | intergenic (+28/+335) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,556 | A→C | 6.6% | intergenic (+29/+334) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,558 | G→T | 6.3% | intergenic (+31/+332) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,564 | G→A | 6.3% | intergenic (+37/+326) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,710,635 | G→T | 6.2% | intergenic (‑160/+164) | eptB ← / ← yhjX | KDO phosphoethanolamine transferase, Ca(2+)‑inducible/pyruvate‑inducible inner membrane protein, putative transporter |
| RA | 3,781,131 | T→G | 7.7% | intergenic (+114/‑84) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,792,765 | C→T | 5.4% | intergenic (‑214/+61) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,766 | A→T | 5.2% | intergenic (‑215/+60) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,767 | A→T | 5.2% | intergenic (‑216/+59) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,768 | A→G | 5.2% | intergenic (‑217/+58) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,817,948 | G→T | 5.3% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 5.0% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,923,717 | G→A | 8.6% | intergenic (‑37/+27) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,718 | G→C | 8.7% | intergenic (‑38/+26) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,719 | G→C | 8.6% | intergenic (‑39/+25) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,720 | T→C | 8.8% | intergenic (‑40/+24) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,945,841 | G→T | 9.4% | noncoding (2138/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,976,399 | C→A | 8.1% | A41E (GCA→GAA) | wzxE → | O‑antigen translocase |
| RA | 3,976,402 | A→T | 7.7% | N42I (AAT→ATT) | wzxE → | O‑antigen translocase |
| RA | 3,976,405 | T→G | 7.4% | F43C (TTC→TGC) | wzxE → | O‑antigen translocase |
| RA | 3,989,195 | A→T | 5.7% | L212M (TTG→ATG) | hemD ← | uroporphyrinogen III synthase |
| RA | 4,015,333 | A→T | 8.1% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,031,004 | C→A | 5.0% | intergenic (‑33/‑157) | fadB ← / → pepQ | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase/proline dipeptidase |
| RA | 4,031,006 | T→G | 5.0% | intergenic (‑35/‑155) | fadB ← / → pepQ | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase/proline dipeptidase |
| RA | 4,082,696 | G→C | 5.0% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,121,622 | T→A | 5.1% | E42D (GAA→GAT) | hslU ← | molecular chaperone and ATPase component of HslUV protease |
| RA | 4,121,626 | T→A | 5.8% | N41I (AAC→ATC) ‡ | hslU ← | molecular chaperone and ATPase component of HslUV protease |
| RA | 4,121,627 | T→A | 5.5% | N41Y (AAC→TAC) ‡ | hslU ← | molecular chaperone and ATPase component of HslUV protease |
| RA | 4,130,005 | G→A | 6.6% | L57L (TTG→TTA) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,130,008 | T→C | 6.7% | I58I (ATT→ATC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,177,172 | T→A | 5.3% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,184,497 | A→C | 23.5% | M1085L (ATG→CTG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,231,006 | T→C | 5.4% | L218P (CTG→CCG) ‡ | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,231,007 | G→A | 5.6% | L218L (CTG→CTA) ‡ | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,231,009 | G→C | 5.4% | G219A (GGG→GCG) | rluF → | 23S rRNA pseudouridine(2604) synthase |
| RA | 4,270,142 | G→A | 5.5% | intergenic (+15/‑96) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,144 | G→C | 5.4% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,146 | T→C | 5.5% | intergenic (+19/‑92) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,279,854 | T→C | 6.3% | intergenic (+26/‑126) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,279,855 | G→A | 6.4% | intergenic (+27/‑125) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,279,858 | A→C | 6.1% | intergenic (+30/‑122) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,279,861 | G→T | 6.3% | intergenic (+33/‑119) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,279,864 | T→C | 6.0% | intergenic (+36/‑116) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,279,865 | G→A | 6.1% | intergenic (+37/‑115) | ghxP → / → yjcE | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter/putative cation/proton antiporter |
| RA | 4,296,060 | C→T | 45.5% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,336,974 | A→T | 5.4% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,979 | A→C | 6.2% | M18R (ATG→AGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,981 | C→G | 5.4% | L17L (CTG→CTC) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,983 | G→T | 5.6% | L17M (CTG→ATG) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,988 | A→T | 5.3% | V15D (GTC→GAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,353,170 | G→A | 5.5% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 5.4% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 5.4% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 5.6% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,378,976 | A→T | 6.5% | intergenic (‑32/+31) | ampC ← / ← frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| RA | 4,378,977 | T→A | 6.9% | intergenic (‑33/+30) | ampC ← / ← frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| RA | 4,378,978 | A→T | 6.0% | intergenic (‑34/+29) | ampC ← / ← frdD | penicillin‑binding protein; beta‑lactamase, intrinsically weak/fumarate reductase (anaerobic), membrane anchor subunit |
| RA | 4,470,951 | A→C | 6.7% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 6.5% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 6.7% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 6.7% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,473,927 | C→A | 100% | A43S (GCC→TCC) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,479,012 | A→T | 5.6% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 5.2% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,512,350:1 | +G | 5.3% | coding (65/957 nt) | fecD ← | ferric citrate ABC transporter permease |
| RA | 4,520,500 | Δ1 bp | 5.7% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 5.6% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 448624 | 450709 | 2086 | 79 [77] | [76] 78 | [cyoC]–[cyoA] | [cyoC],cyoB,[cyoA] |
| * | * | ÷ | NC_000913 | 1166023 | 1167437 | 1415 | 79 [76] | [77] 78 | ndh | ndh |
| * | * | ÷ | NC_000913 | 3423664–3424579 | 3424579 | 1–916 | 78 [77] | [77] 79 | rrfD–[rrlD] | rrfD,[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 16653 | NA (NA) | 9 (0.070) | 7/264 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 211775 | 97 (0.750) | 5 (0.040) | 3/268 | NT | 5.1% | coding (2097/2142 nt) | ldcC | lysine decarboxylase 2, constitutive |
| ? | NC_000913 | = 211799 | 94 (0.750) | coding (2121/2142 nt) | ldcC | lysine decarboxylase 2, constitutive | |||||
| * | ? | NC_000913 | = 225915 | NA (NA) | 4 (0.030) | 4/262 | NT | NA | noncoding (157/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225926 | NA (NA) | noncoding (168/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 9 (0.070) | 5/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274384 = | NA (NA) | 3 (0.020) | 3/272 | NT | NA | noncoding (766/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274422 = | NA (NA) | noncoding (728/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 12 (0.100) | 6/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 5 (0.040) | 5/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 315563 = | NA (NA) | 3 (0.020) | 3/258 | NT | NA | noncoding (335/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315599 = | NA (NA) | noncoding (371/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 9 (0.070) | 7/268 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 3 (0.020) | 3/260 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 381663 = | NA (NA) | 5 (0.040) | 4/264 | NT | NA | noncoding (404/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381703 = | NA (NA) | noncoding (444/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 7 (0.060) | 7/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 3 (0.020) | 3/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 474269 = | NA (NA) | 4 (0.030) | 3/266 | NT | NA | intergenic (+17/+32) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 |
| ? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonium transporter/acyl‑CoA thioesterase 2 | |||||
| * | ? | NC_000913 | 716906 = | 90 (0.690) | 6 (0.050) | 6/258 | NT | 6.8% | intergenic (‑36/+40) | ybfI/potE | pseudogene/putrescine/proton symporter: putrescine/ornithine antiporter |
| ? | NC_000913 | 716932 = | 80 (0.660) | intergenic (‑62/+14) | ybfI/potE | pseudogene/putrescine/proton symporter: putrescine/ornithine antiporter | |||||
| * | ? | NC_000913 | 781369 = | 79 (0.610) | 19 (0.150) +GAG |
11/272 | NT | 26.1% | noncoding (1/76 nt) | lysZ | tRNA‑Lys |
| ? | NC_000913 | = 2521006 | 31 (0.240) | noncoding (76/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781577 = | 57 (0.440) | 45 (0.350) +G |
8/276 | NT | 50.5% | noncoding (1/76 nt) | lysQ | tRNA‑Lys |
| ? | NC_000913 | = 2521129 | 32 (0.250) | intergenic (+3/‑44) | valX/valY | tRNA‑Val/tRNA‑Val | |||||
| * | ? | NC_000913 | 1187036 = | NA (NA) | 4 (0.030) | 4/268 | NT | NA | coding (1193/1227 nt) | pepT | peptidase T |
| ? | NC_000913 | 1187066 = | NA (NA) | coding (1223/1227 nt) | pepT | peptidase T | |||||
| * | ? | NC_000913 | 1207790 = | 36 (0.280) | 52 (0.450) | 44/246 | NT | 59.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 40 (0.350) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 36 (0.280) | 58 (0.510) | 46/246 | NT | 61.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 40 (0.350) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 156 (1.240) | 109/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 12 (0.100) | 6/266 | NT | 8.4% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 137 (1.060) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1463445 | 122 (0.940) | 6 (0.050) | 5/264 | NT | 5.2% | intergenic (+7/‑94) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | = 1463482 | 102 (0.830) | intergenic (+44/‑57) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 1465092 = | 125 (0.960) | 8 (0.070) | 7/256 | NT | 6.5% | intergenic (+31/+73) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein |
| ? | NC_000913 | 1465125 = | 116 (0.970) | intergenic (+64/+40) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein | |||||
| * | ? | NC_000913 | 1612526 = | 95 (0.730) | 6 (0.050) | 4/270 | NT | 6.2% | coding (726/927 nt) | glsB | glutaminase 2 |
| ? | NC_000913 | 1612584 = | 89 (0.710) | coding (668/927 nt) | glsB | glutaminase 2 | |||||
| * | ? | NC_000913 | 2240649 = | 140 (1.080) | 7 (0.060) | 5/264 | NT | 5.1% | coding (1020/1041 nt) | galS | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| ? | NC_000913 | 2240704 = | 127 (1.030) | coding (965/1041 nt) | galS | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | 2393131 = | NA (NA) | 5 (0.040) | 3/264 | NT | NA | noncoding (1/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2393163 = | NA (NA) | noncoding (33/36 nt) | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2596863 = | 110 (0.850) | 5 (0.040) | 5/256 | NT | 5.3% | intergenic (‑126/+42) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| ? | NC_000913 | 2596890 = | 79 (0.660) | intergenic (‑153/+15) | ypfJ/purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase | |||||
| * | ? | NC_000913 | = 2729452 | 48 (0.370) | 5 (0.040) | 4/258 | NT | 8.7% | intergenic (‑8/+164) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 2729474 | 60 (0.500) | intergenic (‑30/+142) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2822046 = | 125 (0.960) | 10 (0.080) | 6/266 | NT | 7.8% | intergenic (‑35/+93) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA |
| ? | NC_000913 | 2822080 = | 117 (0.940) | intergenic (‑69/+59) | alaS/recX | alanyl‑tRNA synthetase/regulatory protein for RecA | |||||
| * | ? | NC_000913 | = 3060667 | NA (NA) | 4 (0.030) | 4/262 | NT | NA | noncoding (8/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 3060672 | NA (NA) | noncoding (13/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3539757 = | NA (NA) | 3 (0.020) | 3/260 | NT | NA | noncoding (12/34 nt) | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3539792 = | NA (NA) | intergenic (+86/‑371) | yhgF/feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A | |||||
| * | ? | NC_000913 | 3620119 = | NA (NA) | 5 (0.040) | 3/266 | NT | 100% | coding (928/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620146 = | 0 (0.000) | coding (955/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620220 | NA (NA) | 5 (0.040) | 5/266 | NT | 100% | coding (1029/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620255 | 0 (0.000) | coding (1064/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3667192 = | 0 (0.000) | 3 (0.020) | 3/266 | NT | 20.0% | coding (389/1401 nt) | gadA | glutamate decarboxylase A, PLP‑dependent |
| ? | NC_000913 | 3667233 = | 24 (0.190) | coding (348/1401 nt) | gadA | glutamate decarboxylase A, PLP‑dependent | |||||
| * | ? | NC_000913 | 3714505 = | 110 (0.850) | 6 (0.050) | 4/260 | NT | 5.7% | coding (1890/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | NC_000913 | 3714555 = | 96 (0.790) | coding (1840/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| * | ? | NC_000913 | 4542682 = | 145 (1.120) | 9 (0.070) | 8/260 | NT | 6.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 130 (1.070) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 146 (1.130) | 8 (0.070) | 8/260 | NT | 5.7% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 130 (1.070) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||