mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 5,144 | G→A | 100% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
| RA | 10,444 | G→T | 94.6% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
| RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
| RA | 23,203 | G→T | 6.3% | V271V (GTG→GTT) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 25,013 | G→T | 25.2% | D875Y (GAC→TAC) | ileS → | isoleucyl‑tRNA synthetase |
| RA | 25,546 | G→T | 54.2% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
| RA | 29,139 | G→T | 94.8% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
| RA | 49,840 | G→T | 79.9% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
| RA | 55,590 | G→T | 62.2% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 56,677 | G→T | 92.6% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 61,087 | G→T | 7.8% | I726I (ATC→ATA) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 79,882 | G→T | 10.8% | V45V (GTC→GTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 80,123 | C→T | 46.3% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
| RA | 81,562 | C→A | 55.8% | I236I (ATC→ATA) | leuO → | global transcription factor |
| RA | 97,521 | C→A | 90.4% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
| RA | 103,467 | G→T | 92.6% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 104,561 | G→T | 93.6% | A124S (GCG→TCG) | secM → | regulator of secA translation |
| RA | 109,800 | A→T | 8.5% | intergenic (‑94/‑131) | coaE ← / → guaC | dephospho‑CoA kinase/GMP reductase |
| RA | 118,873 | G→T | 94.3% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
| RA | 132,632 | A→T | 12.4% | V107E (GTG→GAG) | speE ← | spermidine synthase (putrescine aminopropyltransferase) |
| RA | 142,460 | T→A | 100% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
| RA | 153,472 | G→T | 92.9% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
| RA | 158,287 | C→A | 94.2% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
| RA | 161,068 | A→C | 27.7% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 186,810 | T→A | 7.9% | G150G (GGT→GGA) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 210,546 | C→A | 7.9% | V23F (GTT→TTT) | yaeP ← | UPF0253 family protein |
| RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
| RA | 232,860 | G→T | 92.3% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 234,984 | G→T | 18.7% | I80I (ATC→ATA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 234,994 | G→T | 28.1% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,006 | G→T | 14.0% | T73K (ACG→AAG) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,010 | G→T | 24.7% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,019 | C→A | 32.8% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,022 | G→T | 25.0% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 235,036 | G→T | 23.1% | S63Y (TCC→TAC) | ykfM ← | lethality reduction protein, putative inner membrane protein |
| RA | 238,195 | G→T | 93.7% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 255,882 | A→T | 11.0% | intergenic (‑71/‑217) | phoE ← / → proB | outer membrane phosphoporin protein E/gamma‑glutamate kinase |
| RA | 260,931 | T→A | 5.4% | intergenic (‑14/+84) | yafX ← / ← ykfF | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 274,735 | A→T | 55.4% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
| RA | 280,433 | G→T | 9.6% | G508C (GGC→TGC) | yagF → | CP4‑6 prophage; dehydratase family protein |
| RA | 308,217 | A→T | 6.5% | V3V (GTT→GTA) | ykgO ← | RpmJ‑like protein |
| RA | 312,532 | G→A | 90.9% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
| RA | 320,920 | G→A | 93.5% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
| RA | 321,223 | C→A | 62.6% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
| RA | 327,515 | G→T | 19.2% | intergenic (+308/‑567) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 344,800 | G→T | 32.6% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
| RA | 345,384 | G→C | 5.0% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 345,428 | T→C | 5.8% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 353,486 | A→T | 7.7% | intergenic (+321/+16) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 353,489 | C→T | 7.3% | intergenic (+324/+13) | codA → / ← cynR | cytosine/isoguanine deaminase/transcriptional activator of cyn operon; autorepressor |
| RA | 353,517 | T→C | 5.4% | G295G (GGA→GGG) | cynR ← | transcriptional activator of cyn operon; autorepressor |
| RA | 360,114 | A→T | 6.3% | intergenic (‑48/+547) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| RA | 360,157 | T→G | 6.3% | intergenic (‑91/+504) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
| RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
| RA | 362,159 | G→T | 93.5% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
| RA | 363,890 | G→T | 7.4% | M349I (ATG→ATT) | mhpA → | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 369,273 | G→T | 5.5% | A299A (GCG→GCT) | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| RA | 396,883 | A→G | 46.4% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
| RA | 400,819 | A→C | 12.5% | V94V (GTT→GTG) | proC ← | pyrroline‑5‑carboxylate reductase, NAD(P)‑binding |
| RA | 402,340 | G→T | 91.1% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
| RA | 406,075 | C→A | 94.3% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
| RA | 411,027 | G→T | 100% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
| RA | 421,799 | C→A | 49.1% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
| RA | 433,551 | G→T | 89.9% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 434,663 | A→C | 100% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 435,336 | G→T | 100% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| RA | 437,672 | T→A | 92.7% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
| RA | 442,849 | C→A | 10.0% | A105S (GCG→TCG) | cyoE ← | protoheme IX farnesyltransferase |
| RA | 444,489 | G→A | 90.8% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
| RA | 456,298 | T→A | 94.2% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 456,588 | G→T | 93.4% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
| RA | 474,138 | G→T | 100% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
| RA | 475,805 | C→A | 91.6% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
| RA | 479,244 | C→A | 93.5% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
| RA | 480,820 | C→T | 92.8% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
| RA | 481,667 | G→A | 87.1% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
| RA | 507,331 | G→A | 14.2% | D79N (GAT→AAT) | glsA → | glutaminase 1 |
| RA | 510,357 | A→T | 9.2% | I291I (ATT→ATA) | qmcA ← | PHB domain membrane‑anchored putative protease |
| RA | 523,244 | G→T | 10.7% | E70* (GAA→TAA) | ybbC → | putative immunity protein |
| RA | 530,466 | C→A | 93.2% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
| RA | 534,666 | G→A | 12.2% | D22N (GAT→AAT) | allB → | allantoinase |
| RA | 542,200 | Δ1 bp | 100% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 544,713 | G→T | 14.9% | D301Y (GAT→TAT) | ylbE → | NO‑induced DUF1116 protein |
| RA | 546,491 | G→T | 94.1% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
| RA | 549,397 | G→T | 93.4% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
| RA | 550,786 | G→T | 14.2% | A240A (GCG→GCT) | cysS → | cysteinyl‑tRNA synthetase |
| RA | 568,099 | G→T | 8.0% | E60* (GAA→TAA) | ybcN → | DLP12 prophage; uncharacterized protein |
| RA | 576,998 | G→T | 53.6% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| RA | 581,203 | A→T | 94.2% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
| RA | 583,341 | T→G | 94.7% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
| RA | 607,931 | G→A | 93.7% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
| RA | 625,364 | G→T | 82.9% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 630,088 | G→T | 18.0% | A349A (GCG→GCT) | ybdL → | methionine aminotransferase, PLP‑dependent |
| RA | 631,333 | G→A | 5.1% | N231N (AAC→AAT) | ybdN ← | PAPS reductase‑like domain protein |
| RA | 637,236 | C→T | 8.4% | D30N (GAT→AAT) | uspG ← | universal stress protein UP12 |
| RA | 639,231 | G→A | 93.9% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
| RA | 647,422 | G→T | 92.8% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 647,509 | T→C | 92.8% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 648,056 | C→A | 91.5% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
| RA | 652,865 | Δ1 bp | 89.1% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
| RA | 654,624 | T→G | 5.6% | intergenic (+18/+83) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 662,108 | A→T | 82.8% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 704,018 | G→T | 7.5% | D77Y (GAT→TAT) | chiP → | chitoporin, uptake of chitosugars |
| RA | 705,588 | C→A | 93.6% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 708,114 | C→A | 5.0% | D49Y (GAT→TAT) | ybfF ← | acyl‑CoA esterase |
| RA | 724,497 | A→G | 8.1% | intergenic (‑220/‑93) | kdpF ← / → ybfA | potassium ion accessory transporter subunit/DUF2517 family protein |
| RA | 724,813 | A→T | 91.4% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
| RA | 725,270 | T→A | 5.5% | Y78N (TAC→AAC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 733,004 | G→T | 5.6% | pseudogene (724/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 745,893 | G→T | 6.0% | S578* (TCG→TAG) | ybgQ ← | putative outer membrane protein |
| RA | 754,572 | G→T | 90.7% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 758,030 | C→A | 7.2% | I351I (ATC→ATA) | sucB → | dihydrolipoyltranssuccinase |
| RA | 759,000 | C→A | 100% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
| RA | 764,517 | G→A | 5.2% | D362N (GAC→AAC) | mngB → | alpha‑mannosidase |
| RA | 776,694 | T→A | 5.3% | intergenic (+16/‑131) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 788,902 | G→T | 93.3% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 800,488 | G→T | 49.1% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
| RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
| RA | 816,078 | C→G | 12.2% | intergenic (+34/‑171) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
| RA | 828,374 | G→T | 92.6% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
| RA | 832,445 | G→T | 63.8% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
| RA | 833,505 | G→T | 8.0% | intergenic (‑124/+141) | ybiJ ← / ← ybiI | DUF1471 family putative periplasmic protein/DksA‑type zinc finger protein |
| RA | 837,110 | C→T | 8.2% | intergenic (‑123/+142) | fiu ← / ← mcbA | catecholate siderophore receptor Fiu/colanic acid mucoidy stimulation protein |
| RA | 842,546 | A→C | 8.8% | P10P (CCT→CCG) | glnP ← | glutamine transporter subunit |
| RA | 843,299 | C→A | 41.1% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
| RA | 876,447 | G→A | 100% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
| RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
| RA | 895,180 | G→T | 10.4% | intergenic (+79/+120) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine binding protein, periplasmic |
| RA | 916,133 | G→T | 5.9% | A111S (GCC→TCC) | macB → | fused macrolide transporter subunits of ABC superfamily: ATP‑binding component/membrane component |
| RA | 918,501 | G→A | 6.8% | D45N (GAC→AAC) | clpS → | regulatory protein for ClpA substrate specificity |
| RA | 924,905 | G→T | 11.6% | S505* (TCG→TAG) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 925,160 | G→T | 47.7% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 939,763 | C→A | 8.2% | S92* (TCG→TAG) | dmsC → | dimethyl sulfoxide reductase, anaerobic, subunit C |
| RA | 941,177 | G→A | 10.8% | intergenic (‑164/‑150) | ycaC ← / → ycaD | putative isochorismatase family hydrolase/putative MFS‑type transporter |
| RA | 943,573 | G→T | 42.4% | A297S (GCC→TCC) | ycaM → | putative transporter |
| RA | 954,475 | C→A | 14.4% | R70S (CGT→AGT) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 960,043 | G→T | 15.3% | G90C (GGC→TGC) | ycaI → | ComEC family inner membrane protein |
| RA | 968,415 | G→T | 100% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
| RA | 975,610 | G→T | 6.7% | V1277L (GTG→TTG) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 982,997 | G→T | 5.6% | intergenic (‑559/+44) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,035,483 | G→T | 5.1% | M244I (ATG→ATT) | cbdB → | cytochrome bd‑II oxidase, subunit II |
| RA | 1,048,928 | C→A | 39.2% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,049,407 | G→T | 51.1% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,055,901 | A→T | 6.6% | Q397L (CAA→CTA) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,077,911 | A→C | 100% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
| RA | 1,084,103 | A→T | 44.8% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,116,964 | A→G | 100% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
| RA | 1,118,506 | A→T | 8.3% | L75Q (CTA→CAA) | yceB ← | lipoprotein, DUF1439 family |
| RA | 1,144,835 | G→A | 13.2% | M207I (ATG→ATA) | fabH → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase III |
| RA | 1,147,750 | A→T | 7.0% | H119L (CAC→CTC) | fabF → | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,711 | C→A | 6.3% | A165E (GCG→GAG) | holB → | DNA polymerase III, delta prime subunit |
| RA | 1,151,750 | G→T | 91.2% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
| RA | 1,152,278 | G→T | 93.9% | E16* (GAA→TAA) | ycfH → | putative DNase |
| RA | 1,193,873 | G→T | 100% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
| RA | 1,197,734 | C→T | 5.1% | R219K (AGA→AAA) | cohE ← | e14 prophage; repressor protein phage e14 |
| RA | 1,211,169 | C→A | 58.5% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
| RA | 1,219,533 | A→G | 90.8% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
| RA | 1,224,292 | G→A | 92.6% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
| RA | 1,226,292 | T→A | 82.8% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
| RA | 1,228,591 | G→T | 93.6% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
| RA | 1,266,181 | C→G | 9.8% | intergenic (+265/+24) | rdlC → / ← chaA | sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR‑C repeat, with toxic peptide LdrC/calcium/sodium:proton antiporter |
| RA | 1,277,786 | G→A | 64.0% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,282,421 | A→G | 7.1% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,305,621 | G→A | 5.7% | P92P (CCG→CCA) | tonB → | membrane spanning protein in TonB‑ExbB‑ExbD transport complex |
| RA | 1,309,158 | G→A | 12.4% | I108I (ATC→ATT) | yciE ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,317,200 | G→T | 11.1% | Q2K (CAA→AAA) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,140 | T→A | 100% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
| RA | 1,337,533 | G→T | 64.0% | A18E (GCA→GAA) | osmB ← | lipoprotein |
| RA | 1,339,148 | C→T | 7.4% | G618S (GGT→AGT) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
| RA | 1,345,918 | C→A | 5.4% | D34Y (GAT→TAT) | ycjD ← | DUF559 family endonuclease‑related protein |
| RA | 1,355,349 | T→A | 6.4% | intergenic (‑184/‑28) | puuA ← / → puuD | glutamate‑‑putrescine ligase/gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| RA | 1,365,283 | G→T | 100% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
| RA | 1,374,303 | T→C | 5.7% | R721R (CGT→CGC) | ycjT → | putative family 65 glycosyl hydrolase |
| JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
| RA | 1,377,394 | C→T | 100% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
| RA | 1,386,008 | G→T | 93.6% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
| RA | 1,388,406 | G→T | 94.8% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| RA | 1,389,205 | G→A | 5.2% | A325A (GCC→GCT) | ynaI ← | mechanosensitive channel protein, very small conductance |
| RA | 1,403,313 | C→T | 14.0% | intergenic (+23/‑73) | ydaN → / → fnrS | putative Zn(II) transporter/FNR‑activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq‑dependent; mediates negative FNR regulation |
| RA | 1,424,234 | C→A | 61.4% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
| JC JC | 1,428,894 | IS2 (–) +5 bp | 69.8% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,439,518 | C→A | 40.4% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,454,724 | G→T | 44.6% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
| RA | 1,460,752 | C→T | 5.1% | pseudogene (1104/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,472,138 | G→T | 8.6% | A87A (GCG→GCT) | ynbA → | inner membrane protein |
| RA | 1,495,078 | G→T | 9.3% | V83V (GTG→GTT) | tehA → | potassium‑tellurite ethidium and proflavin transporter |
| RA | 1,501,734 | G→T | 13.4% | D233Y (GAT→TAT) | ydcP → | putative peptidase |
| RA | 1,519,349 | T→A | 100% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
| RA | 1,521,540 | T→C | 9.7% | intergenic (+131/‑619) | yncH → / → rhsE | IPR020099 family protein/pseudogene, Rhs family protein |
| RA | 1,534,850 | G→T | 6.6% | L666L (CTC→CTA) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,548,144 | G→T | 94.7% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
| RA | 1,555,079 | C→T | 5.3% | P36P (CCG→CCA) | ddpB ← | D‑ala‑D‑ala transporter subunit |
| RA | 1,563,276 | G→T | 100% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,565,497 | G→A | 100% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
| RA | 1,575,339 | G→T | 58.9% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
| RA | 1,589,490 | C→T | 5.7% | pseudogene (2755/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,603,440 | G→A | 61.1% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
| RA | 1,620,961 | T→G | 52.7% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,623,755 | T→G | 8.3% | L472F (TTA→TTC) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
| RA | 1,633,239 | A→G | 6.7% | intergenic (‑315/+48) | cspI ← / ← rzpQ | Qin prophage; cold shock protein/Rz‑like protein, Qin prophage |
| RA | 1,640,634 | G→T | 15.1% | intergenic (+175/‑28) | ydfV → / → flxA | Qin prophage; uncharacterized protein/Qin prophage; uncharacterized protein |
| RA | 1,653,713 | T→A | 18.7% | V463E (GTG→GAG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
| RA | 1,670,108 | A→C | 5.8% | V170V (GTT→GTG) | pntB ← | pyridine nucleotide transhydrogenase, beta subunit |
| RA | 1,679,816 | C→A | 6.8% | D344Y (GAC→TAC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,696,612 | A→T | 89.8% | E41D (GAA→GAT) | add → | adenosine deaminase |
| RA | 1,703,062 | T→A | 10.7% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,071 | A→T | 7.2% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,101 | C→G | 8.0% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,711,397 | C→T | 92.1% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
| RA | 1,732,014 | C→A | 8.3% | intergenic (‑212/‑87) | ynhF ← / → purR | stress response membrane/transcriptional repressor, hypoxanthine‑binding |
| RA | 1,754,950 | T→A | 46.4% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,770,281 | T→A | 100% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
| RA | 1,802,047 | G→A | 93.3% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
| RA | 1,823,835 | A→C | 7.9% | W53G (TGG→GGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,823,843 | A→C | 8.5% | F50C (TTT→TGT) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,825,763 | C→A | 44.3% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
| RA | 1,832,413 | C→A | 91.0% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
| RA | 1,833,730 | C→A | 100% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
| RA | 1,859,009 | T→G | 8.3% | intergenic (+18/+30) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,861,773 | T→A | 13.6% | I203I (ATT→ATA) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,865,422 | C→A | 100% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
| RA | 1,872,520 | G→T | 92.4% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
| RA | 1,897,318 | T→A | 5.9% | intergenic (+42/‑21) | manX → / → manY | fused mannose‑specific PTS enzymes: IIA component/IIB component/mannose‑specific enzyme IIC component of PTS |
| RA | 1,899,442 | C→T | 10.5% | R129C (CGT→TGT) | yobD → | UPF0266 family inner membrane protein |
| RA | 1,902,474 | T→A | 16.4% | intergenic (‑626/+44) | yobF ← / ← yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
| RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
| RA | 1,931,363 | G→T | 9.2% | R152L (CGT→CTT) | yebK → | putative DNA‑binding transcriptional regulator |
| RA | 1,944,177 | C→A | 94.4% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,948,689 | G→A | 10.5% | intergenic (+19/+146) | cmoB → / ← torZ | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit |
| RA | 1,969,291 | G→T | 90.1% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
| RA | 1,986,289 | T→A | 61.1% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
| RA | 1,997,314 | G→T | 39.7% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
| RA | 1,999,632 | G→T | 36.6% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
| RA | 2,020,166 | C→A | 93.5% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
| RA | 2,035,090 | C→A | 44.5% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,035,236 | A→T | 20.5% | K127N (AAA→AAT) | zinT → | zinc and cadmium binding protein, periplasmic |
| RA | 2,050,206 | A→G | 13.5% | intergenic (+210/‑133) | amn → / → yeeN | AMP nucleosidase/UPF0082 family protein |
| RA | 2,067,248 | C→A | 5.5% | S743R (AGC→AGA) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,074,680 | A→T | 60.3% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
| RA | 2,098,995 | C→A | 100% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
| RA | 2,100,755 | C→T | 6.1% | V352V (GTG→GTA) | glf ← | UDP‑galactopyranose mutase, FAD/NAD(P)‑binding |
| RA | 2,104,927 | C→A | 13.6% | A177A (GCG→GCT) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase subunit, NAD(P)‑binding, of dTDP‑L‑rhamnose synthase |
| RA | 2,107,730 | C→A | 7.1% | E27* (GAG→TAG) | wcaN ← | putative regulatory subunit for GalU |
| RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,114,911 | A→T | 94.4% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
| RA | 2,124,159 | C→A | 12.0% | A67A (GCG→GCT) | wcaD ← | putative colanic acid polymerase |
| RA | 2,139,910 | G→T | 94.8% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
| RA | 2,144,474 | C→A | 100% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
| RA | 2,149,603 | A→T | 45.3% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
| RA | 2,154,191 | G→T | 11.9% | A775A (GCG→GCT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,168,487 | A→T | 30.8% | D14E (GAT→GAA) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
| RA | 2,168,795 | C→A | 89.6% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| RA | 2,169,117 | A→T | 7.1% | D228E (GAT→GAA) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| RA | 2,170,713 | C→A | 30.3% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,170,724 | G→T | 26.7% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,170,757 | T→A | 13.4% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,173,594 | C→A | 8.3% | L7L (CTC→CTA) | yegU → | ADP‑ribosylglycohydrolase family protein |
| RA | 2,179,205 | G→T | 86.4% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
| RA | 2,181,645 | A→G | 53.7% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
| RA | 2,185,860 | G→A | 15.0% | intergenic (‑159/+134) | yehD ← / ← yehE | putative fimbrial‑like adhesin protein/DUF2574 family protein |
| RA | 2,194,695 | T→A | 93.3% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
| RA | 2,195,449 | A→T | 100% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
| RA | 2,206,521 | C→A | 6.9% | D535Y (GAT→TAT) | yehU ← | inner membrane putative sensory kinase in two‑component system with YehT |
| RA | 2,216,296 | C→A | 100% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| RA | 2,222,684 | G→C | 7.5% | intergenic (+140/+233) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,225,190 | C→T | 54.7% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
| RA | 2,237,098 | G→T | 88.0% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
| RA | 2,264,143 | G→A | 92.9% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,289,374 | C→A | 94.3% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
| RA | 2,292,972 | C→A | 5.0% | R29L (CGC→CTC) | napH ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
| RA | 2,298,128 | C→T | 7.1% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,393 | A→G | 7.1% | intergenic (+521/+194) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,303,070 | T→G | 95.0% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
| RA | 2,305,116 | C→A | 93.6% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,305,135 | T→C | 90.7% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
| RA | 2,306,584 | T→A | 15.2% | noncoding (22/93 nt) | micF → | sRNA antisense regulator affecting ompF expression, Hfq‑dependent |
| RA | 2,319,874 | C→A | 6.9% | A96E (GCG→GAG) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,330,502 | C→A | 41.7% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
| RA | 2,352,573 | C→A | 94.2% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,352,965 | C→A | 11.9% | E223* (GAA→TAA) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,359,673 | G→T | 93.4% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
| RA | 2,362,338 | T→A | 100% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
| RA | 2,370,361:1 | +G | 100% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,370,987 | C→A | 93.6% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| RA | 2,372,716 | C→A | 5.2% | R8L (CGA→CTA) | menD ← | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase; SEPHCHC synthase |
| RA | 2,379,310 | C→A | 14.1% | intergenic (‑109/‑29) | yfbK ← / → yfbL | Von Willebrand factor domain putative lipoprotein/putative peptidase |
| RA | 2,381,180 | G→A | 11.4% | intergenic (+264/+9) | yfbM → / ← yfbN | DUF1877 family protein/uncharacterized protein |
| RA | 2,399,210 | G→T | 92.0% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,405,946 | T→G | 94.3% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
| RA | 2,416,101 | C→A | 90.3% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
| RA | 2,422,841 | C→A | 100% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
| RA | 2,424,074 | C→T | 93.7% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
| RA | 2,447,536 | C→A | 7.4% | pseudogene (945/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,450,335 | C→T | 93.2% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,450,346 | G→T | 91.9% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,451,874 | T→A | 7.7% | E255D (GAA→GAT) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,452,454 | G→T | 89.8% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,454,297 | T→G | 91.6% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
| RA | 2,457,708 | G→T | 23.0% | intergenic (+159/+23) | yfdF → / ← mlaA | uncharacterized protein/ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,463,906 | C→A | 16.9% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,463,915 | C→A | 8.9% | Q436K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,466,589 | T→G | 6.3% | pseudogene (476/708 nt) | oweS ← | pseudogene, CPS‑53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related |
| RA | 2,474,418 | G→T | 100% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
| RA | 2,520,652 | C→A | 88.6% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
| RA | 2,525,538 | G→T | 7.6% | A239A (GCG→GCT) | cysZ → | EI24 family inner membrane protein; putative sulfate transporter |
| RA | 2,549,676 | C→A | 91.4% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,568,720 | C→T | 93.9% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
| RA | 2,570,299 | C→A | 5.7% | E480* (GAA→TAA) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| RA | 2,576,325 | C→A | 94.3% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
| RA | 2,580,597 | C→A | 7.4% | T503K (ACG→AAG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP (NarL) |
| RA | 2,587,029:1 | +G | 94.0% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
| RA | 2,589,933 | G→A | 93.2% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
| RA | 2,602,418 | C→A | 8.8% | I191I (ATC→ATA) | hyfG → | hydrogenase 4, subunit |
| RA | 2,606,516 | G→T | 100% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,610,919 | C→A | 87.6% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
| RA | 2,611,370 | T→A | 11.3% | intergenic (+74/+64) | yfgD → / ← hda | putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation |
| RA | 2,614,168 | C→A | 93.9% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
| RA | 2,649,384 | C→A | 7.7% | D112Y (GAC→TAC) | pepB ← | aminopeptidase B |
| RA | 2,651,665 | G→T | 100% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,664,779 | G→T | 8.5% | D66Y (GAT→TAT) | hcaB → | 2,3‑dihydroxy‑2,3‑dihydrophenylpropionate dehydrogenase |
| RA | 2,665,754 | T→G | 8.4% | L117V (TTG→GTG) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
| RA | 2,671,274 | C→A | 94.0% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
| RA | 2,681,873 | T→A | 100% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| RA | 2,683,829 | C→A | 85.1% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
| RA | 2,685,077 | T→A | 5.3% | N1276Y (AAC→TAC) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,689,722 | T→G | 13.2% | L188* (TTA→TGA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
| RA | 2,702,530 | G→T | 7.6% | A78A (GCC→GCA) | rseA ← | anti‑sigma factor |
| RA | 2,711,673 | A→C | 7.3% | V72G (GTT→GGT) | yfiF ← | putative methyltransferase |
| RA | 2,715,643 | G→T | 92.3% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
| RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,726,786 | C→A | 91.1% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
| RA | 2,730,313 | G→A | 23.9% | intergenic (+71/‑200) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
| RA | 2,744,009 | T→A | 5.2% | D20V (GAT→GTT) | grpE ← | heat shock protein |
| RA | 2,757,516 | C→A | 10.2% | V333F (GTC→TTC) | yfjL ← | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
| RA | 2,771,358 | G→A | 92.2% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,779,067 | C→A | 93.2% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
| RA | 2,808,200 | G→T | 7.7% | noncoding (40/78 nt) | micA → | sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq‑dependent |
| RA | 2,809,621 | C→A | 15.6% | D60Y (GAT→TAT) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
| RA | 2,828,952 | C→A | 87.4% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
| RA | 2,841,044 | C→A | 60.6% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
| RA | 2,846,898 | T→A | 8.8% | C96S (TGT→AGT) | hypE → | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein |
| RA | 2,850,790 | C→A | 92.6% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,873,087 | G→T | 100% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
| RA | 2,876,760 | C→T | 94.3% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,878,668 | G→T | 100% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,879,449 | G→T | 46.6% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,888,584 | G→T | 93.3% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
| RA | 2,901,394 | C→A | 27.7% | A544A (GCG→GCT) | pyrG ← | CTP synthetase |
| RA | 2,908,575 | G→T | 9.6% | V54F (GTT→TTT) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,921,151 | C→T | 8.7% | intergenic (+120/‑437) | ygdH → / → sdaC | UPF0717 family protein/putative serine transporter |
| RA | 2,931,717 | C→A | 100% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
| RA | 2,934,843 | G→T | 94.8% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
| RA | 2,950,690 | C→A | 6.1% | K518N (AAG→AAT) | ptrA ← | protease III |
| RA | 2,959,004 | G→A | 84.8% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,970,289 | T→G | 5.8% | L111R (CTG→CGG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 2,985,221 | G→A | 5.4% | intergenic (+103/‑232) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,989,295 | C→A | 100% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
| RA | 2,989,350 | T→C | 11.2% | pseudogene (30/261 nt) pseudogene (370/399 nt) |
ygeN ← ygeO ← |
pseudogene pseudogene, orgA homolog, part of T3SS PAI ETT2 remnant |
| RA | 2,993,211 | C→A | 91.0% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
| RA | 2,993,699 | C→A | 88.9% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
| RA | 3,017,285 | G→T | 82.1% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,024,983 | C→G | 90.4% | G86G (GGC→GGG) | uacT → | uric acid permease |
| RA | 3,034,205 | G→T | 5.1% | L75L (CTC→CTA) | sdhE ← | flavinator of succinate dehydrogenase; antitoxin of CptAB toxin‑antitoxin pair |
| RA | 3,039,409 | T→G | 15.8% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| RA | 3,044,464 | G→A | 89.6% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
| RA | 3,051,973 | C→T | 14.6% | intergenic (‑204/+52) | serA ← / ← rpiA | D‑3‑phosphoglycerate dehydrogenase/ribose 5‑phosphate isomerase, constitutive |
| RA | 3,055,546 | C→A | 10.3% | I446I (ATC→ATA) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,064,914 | G→T | 38.2% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
| RA | 3,075,114 | C→A | 100% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
| RA | 3,076,526 | C→A | 93.6% | D211Y (GAC→TAC) | speB ← | agmatinase |
| RA | 3,080,618 | T→A | 100% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
| RA | 3,080,755 | T→G | 23.0% | F231V (TTC→GTC) | metK → | S‑adenosylmethionine synthetase |
| RA | 3,080,759 | T→G | 7.0% | V232G (GTT→GGT) | metK → | S‑adenosylmethionine synthetase |
| RA | 3,110,751 | C→A | 90.1% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,111,434 | C→A | 91.6% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
| RA | 3,116,290 | C→G | 8.1% | G292A (GGC→GCC) | glcB ← | malate synthase G |
| RA | 3,120,216 | C→A | 100% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
| RA | 3,144,158 | C→A | 55.3% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
| RA | 3,167,181 | C→A | 10.0% | P525P (CCG→CCT) | parE ← | DNA topoisomerase IV, subunit B |
| RA | 3,173,669 | G→T | 90.4% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
| RA | 3,212,034 | G→T | 9.3% | N134K (AAC→AAA) | aer ← | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| RA | 3,224,927 | C→A | 88.7% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,225,516 | G→T | 7.2% | E165* (GAA→TAA) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| RA | 3,245,848 | G→T | 84.8% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
| RA | 3,247,576 | C→T | 9.3% | intergenic (‑3/‑102) | yhaJ ← / → yhaK | LysR family putative transcriptional regulator/redox‑sensitive bicupin |
| RA | 3,252,258 | C→A | 92.9% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,263,502 | C→T | 5.0% | intergenic (+541/+73) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,266,646 | C→A | 53.9% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
| RA | 3,302,027 | G→T | 94.6% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
| RA | 3,311,918 | C→T | 12.7% | intergenic (‑270/‑78) | metY ← / → argG | tRNA‑Met/argininosuccinate synthetase |
| RA | 3,314,870 | C→A | 62.7% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 3,324,218 | G→T | 6.2% | A299E (GCG→GAG) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,326,092 | C→A | 7.4% | M1M (ATG→ATT) † | yhbE ← | EamA family inner membrane putative transporter |
| RA | 3,347,778 | G→A | 92.2% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,354,405 | C→T | 94.4% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,365,607 | G→T | 91.5% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
| RA | 3,366,537 | C→A | 16.0% | P133P (CCG→CCT) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,373,985 | C→A | 100% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
| RA | 3,375,260 | G→T | 100% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
| RA | 3,385,487 | A→T | 5.5% | intergenic (‑100/+330) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,385,516 | A→T | 7.1% | intergenic (‑129/+301) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| RA | 3,396,082 | G→T | 100% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
| RA | 3,396,554 | C→A | 6.6% | A46A (GCG→GCT) | csrD ← | targeting factor for csrBC sRNA degradation |
| RA | 3,409,403 | C→A | 16.0% | H338N (CAC→AAC) | acrF → | multidrug efflux system protein |
| RA | 3,411,456 | C→A | 10.5% | P1022Q (CCG→CAG) | acrF → | multidrug efflux system protein |
| RA | 3,439,422 | G→T | 11.0% | I26I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| RA | 3,439,443 | G→T | 11.9% | I19I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
| RA | 3,440,151 | G→T | 89.7% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
| RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
| RA | 3,440,832 | T→C | 54.7% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
| RA | 3,441,606 | G→T | 15.3% | intergenic (‑98/+67) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,455,867 | C→A | 92.7% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
| RA | 3,469,906 | T→A | 7.0% | intergenic (‑107/+60) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,473,139 | G→T | 100% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
| RA | 3,476,264 | C→A | 6.0% | S539R (AGC→AGA) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 3,479,537 | A→T | 7.4% | H20L (CAC→CTC) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,479,542 | C→A | 12.5% | H22N (CAT→AAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,479,769 | A→T | 65.2% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,488,966 | G→C | 62.0% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,489,397 | C→A | 42.0% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
| RA | 3,501,571 | C→A | 48.1% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
| RA | 3,504,362 | A→G | 7.1% | intergenic (‑27/+57) | yhfX ← / ← yhfY | putative pyridoxal 5'‑phosphate binding protein/PRD domain protein |
| RA | 3,507,749 | G→T | 47.6% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
| RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
| RA | 3,520,764 | G→T | 7.3% | D313Y (GAC→TAC) | yrfF → | inner membrane protein |
| RA | 3,520,789 | G→T | 9.3% | R321L (CGA→CTA) | yrfF → | inner membrane protein |
| RA | 3,522,558 | G→T | 5.1% | A177A (GCG→GCT) | yrfG → | GMP/IMP nucleotidase |
| RA | 3,525,232 | T→A | 10.4% | L189F (TTA→TTT) | yhgE ← | DUF4153 family putative inner membrane protein |
| RA | 3,525,943 | G→A | 11.1% | intergenic (‑145/‑234) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase |
| RA | 3,543,959 | G→T | 100% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
| RA | 3,559,196 | T→G | 10.9% | Q249P (CAG→CCG) | glgP ← | glycogen phosphorylase |
| RA | 3,559,239 | T→A | 8.7% | S235C (AGT→TGT) | glgP ← | glycogen phosphorylase |
| RA | 3,561,574 | C→A | 100% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,595,522 | C→A | 18.6% | D196Y (GAC→TAC) | ftsE ← | putative ABC superfamily transporter ATP‑binding subunit |
| RA | 3,602,383 | C→A | 16.6% | intergenic (‑27/‑194) | tusA ← / → yhhQ | mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase/DUF165 family inner membrane protein |
| RA | 3,617,026 | A→G | 11.0% | T90A (ACA→GCA) | yhhH → | putative immunity protein for putative polymorphic toxin RhsB |
| RA | 3,629,436 | T→A | 5.7% | intergenic (+183/+132) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| RA | 3,630,907 | G→A | 5.2% | intergenic (‑137/‑95) | yhiN ← / → pitA | putative oxidoreductase/phosphate transporter, low‑affinity; tellurite importer |
| RA | 3,632,965 | A→G | 8.6% | L39S (TTG→TCG) | uspB ← | universal stress (ethanol tolerance) protein B |
| RA | 3,641,809 | A→G | 5.4% | intergenic (+72/‑79) | agrB → / → arsR | Antisense sRNA antitoxin for the DinQ toxin/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,654,444 | A→T | 5.0% | Q224L (CAG→CTG) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,662,660 | T→C | 64.3% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| RA | 3,679,301 | T→G | 93.0% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
| RA | 3,679,324 | C→A | 93.8% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
| RA | 3,680,910 | G→T | 57.6% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
| RA | 3,682,184 | T→G | 9.9% | Q117P (CAA→CCA) | bcsC ← | cellulose synthase subunit |
| RA | 3,696,812 | C→A | 6.7% | D133Y (GAC→TAC) | dppD ← | dipeptide/heme transporter |
| RA | 3,717,788 | C→A | 93.4% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
| RA | 3,721,469 | A→C | 8.3% | D421E (GAT→GAG) | xylB ← | xylulokinase |
| RA | 3,721,480 | T→G | 9.2% | T418P (ACG→CCG) | xylB ← | xylulokinase |
| RA | 3,738,431 | C→A | 92.2% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
| RA | 3,744,506 | C→A | 7.8% | G241G (GGG→GGT) | yiaT ← | putative outer membrane protein |
| RA | 3,774,382 | T→G | 13.9% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,779,281 | C→G | 7.2% | A221G (GCT→GGT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,779,319 | G→T | 12.3% | E234* (GAA→TAA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,785,915 | G→T | 100% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,801,112 | C→T | 11.0% | S116N (AGC→AAC) | waaQ ← | lipopolysaccharide core biosynthesis protein |
| RA | 3,810,195 | C→A | 100% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
| RA | 3,816,601 | A→T | 100% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,818,010 | C→A | 100% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,822,339 | A→C | 14.4% | Q12P (CAA→CCA) ‡ | xanP → | xanthine permease |
| RA | 3,822,340 | A→C | 8.6% | Q12H (CAA→CAC) ‡ | xanP → | xanthine permease |
| RA | 3,825,702 | C→A | 94.9% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
| RA | 3,830,197 | C→A | 94.3% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
| RA | 3,830,311 | G→T | 93.4% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
| RA | 3,832,001 | G→T | 10.1% | A132S (GCT→TCT) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,849,854 | A→T | 7.7% | H27L (CAC→CTC) | yidI → | inner membrane protein |
| RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
| RA | 3,870,977 | T→A | 8.0% | intergenic (‑152/+88) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| RA | 3,904,487 | G→T | 21.7% | I133I (ATC→ATA) | pstS ← | periplasmic phosphate binding protein, high‑affinity |
| RA | 3,907,456 | C→A | 9.9% | D369Y (GAT→TAT) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | 3,907,559 | A→T | 19.5% | P334P (CCT→CCA) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | 3,910,894 | C→A | 100% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,911,608 | C→A | 7.0% | E6D (GAG→GAT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| RA | 3,916,830 | C→A | 91.0% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,917,233 | G→T | 10.1% | I587I (ATC→ATA) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,921,982 | T→A | 10.8% | T328S (ACT→TCT) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,926,496 | A→C | 5.4% | E607D (GAA→GAC) | kup → | potassium transporter |
| RA | 3,926,831 | G→T | 46.4% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
| RA | 3,927,123 | C→A | 8.7% | T138K (ACG→AAG) | rbsD → | putative cytoplasmic sugar‑binding protein |
| RA | 3,930,339 | G→T | 6.4% | V234V (GTG→GTT) | rbsB → | D‑ribose transporter subunit |
| RA | 3,932,727 | C→A | 17.2% | V416F (GTT→TTT) | hsrA ← | putative multidrug or homocysteine efflux system |
| RA | 3,933,988 | C→A | 6.8% | intergenic (‑16/+7) | hsrA ← / ← yieP | putative multidrug or homocysteine efflux system/putative transcriptional regulator |
| RA | 3,944,267 | A→T | 11.2% | pseudogene (348/984 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| RA | 3,944,734 | G→T | 9.9% | pseudogene (815/984 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| RA | 3,951,770 | C→A | 10.6% | I147I (ATC→ATA) | ilvC → | ketol‑acid reductoisomerase, NAD(P)‑binding |
| RA | 3,960,036 | G→A | 100% | R87H (CGC→CAC) | rho → | transcription termination factor |
| RA | 3,966,854 | C→A | 61.0% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,969,710 | G→T | 45.6% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
| RA | 3,971,254 | C→T | 5.6% | L124F (CTT→TTT) | wecF → | TDP‑Fuc4NAc:lipidIIFuc4NAc transferase |
| RA | 3,988,075 | T→A | 62.6% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
| RA | 3,994,076 | A→T | 100% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
| RA | 3,994,247 | A→T | 100% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
| RA | 4,009,705 | G→A | 100% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
| RA | 4,056,018 | T→A | 94.2% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
| RA | 4,062,424 | G→T | 93.3% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
| RA | 4,066,133 | T→G | 94.9% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
| RA | 4,068,208 | C→A | 93.9% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
| RA | 4,085,145 | A→C | 5.9% | A194A (GCT→GCG) | frvB ← | putative PTS enzyme, IIB component/IIC component |
| RA | 4,085,600 | G→T | 12.0% | Q43K (CAA→AAA) | frvB ← | putative PTS enzyme, IIB component/IIC component |
| RA | 4,094,362 | C→A | 100% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,097,822 | G→T | 92.3% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,127,022 | T→G | 100% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
| RA | 4,143,375 | A→G | 5.3% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| RA | 4,172,714 | T→A | 6.8% | F514L (TTT→TTA) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,176,823 | G→T | 92.9% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,177,037 | T→A | 9.2% | L587Q (CTG→CAG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,177,592 | A→T | 6.5% | Y772F (TAC→TTC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,187,518 | G→T | 13.4% | D230Y (GAT→TAT) | nudC → | NADH pyrophosphatase |
| RA | 4,211,576 | G→T | 94.0% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
| RA | 4,211,803 | G→A | 93.3% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
| RA | 4,212,560 | G→T | 8.0% | intergenic (‑145/+172) | arpA ← / ← iclR | ankyrin repeat protein/transcriptional repressor |
| RA | 4,218,688 | G→T | 7.8% | D344Y (GAC→TAC) | yjbB → | putative Na+/Pi‑cotransporter |
| RA | 4,226,640 | G→T | 9.1% | D151Y (GAT→TAT) | yjbF → | extracellular polysaccharide production lipoprotein |
| RA | 4,230,913 | A→T | 100% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
| RA | 4,241,411 | A→G | 8.7% | pseudogene (523/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| RA | 4,242,023 | G→T | 11.2% | pseudogene (1135/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| RA | 4,250,324 | G→A | 19.7% | A26T (GCA→ACA) | yjbL → | uncharacterized protein |
| RA | 4,265,064 | C→A | 61.9% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 4,274,926 | A→C | 94.1% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
| RA | 4,280,688 | G→T | 7.1% | S95S (TCG→TCT) | nrfD → | formate‑dependent nitrite reductase, membrane subunit |
| RA | 4,285,892 | A→G | 7.9% | intergenic (+170/+361) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,285,893 | A→C | 8.7% | intergenic (+171/+360) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,286,118 | A→G | 7.6% | intergenic (+396/+135) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,286,119 | A→C | 7.5% | intergenic (+397/+134) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,290,080 | G→T | 93.3% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
| RA | 4,297,846 | C→A | 100% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
| RA | 4,300,732 | C→T | 6.4% | K22K (AAG→AAA) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 4,303,614 | T→A | 100% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| RA | 4,312,726 | G→T | 11.9% | pseudogene (322/426 nt) | phnE ← | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| RA | 4,315,765 | A→G | 6.0% | intergenic (‑207/+451) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
| RA | 4,341,023 | A→T | 49.3% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| RA | 4,341,110 | C→A | 10.5% | D124Y (GAC→TAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
| RA | 4,356,174 | A→T | 10.9% | I139I (ATT→ATA) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,361,651 | C→A | 6.9% | I270I (ATC→ATA) | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,375,503 | T→A | 6.4% | I98I (ATT→ATA) | yjeN → | uncharacterized protein |
| RA | 4,376,532 | C→T | 5.6% | G886R (GGG→AGG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,388,902 | G→T | 100% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,396,598 | A→T | 100% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
| RA | 4,411,145 | T→G | 8.6% | L450R (CTG→CGG) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
| RA | 4,417,551 | A→C | 66.6% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
| RA | 4,432,682 | G→T | 9.0% | E162* (GAA→TAA) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,433,194 | C→A | 7.9% | G332G (GGC→GGA) | tamA → | translocation and assembly module for autotransporter export, outer membrane subunit |
| RA | 4,458,254 | T→A | 100% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
| RA | 4,458,609 | G→T | 100% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
| RA | 4,466,283 | A→T | 5.7% | N344Y (AAC→TAC) | yjgL → | uncharacterized protein |
| RA | 4,468,165 | A→G | 83.6% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
| RA | 4,468,750 | G→T | 8.6% | intergenic (+44/+101) | rraB → / ← yjgM | protein inhibitor of RNase E/putative acetyltransferase |
| RA | 4,469,550 | G→A | 94.6% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,470,017 | G→A | 100% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,497,208 | C→A | 19.6% | pseudogene (195/255 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,500,728 | C→A | 6.5% | E183* (GAA→TAA) | fecE ← | iron‑dicitrate transporter subunit |
| RA | 4,506,430 | A→T | 8.3% | L22Q (CTG→CAG) | fecA ← | ferric citrate outer membrane transporter |
| RA | 4,506,776 | C→A | 5.3% | P253P (CCG→CCT) | fecR ← | FecI pro‑sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| RA | 4,510,428 | G→T | 5.2% | intergenic (‑287/+60) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,512,693 | T→A | 100% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
| RA | 4,515,264 | C→A | 12.7% | P119P (CCG→CCT) | yjhI ← | putative DNA‑binding transcriptional regulator |
| RA | 4,516,734 | G→T | 17.3% | F207L (TTC→TTA) | sgcE ← | putative epimerase |
| RA | 4,525,234 | G→A | 92.9% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
| RA | 4,527,381 | A→T | 8.4% | Y11N (TAT→AAT) | nanS ← | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
| RA | 4,529,829 | T→C | 11.2% | intergenic (‑511/‑945) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,555,156 | G→T | 55.5% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,556,947 | G→C | 7.8% | G39G (GGC→GGG) | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,562,043 | C→A | 100% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
| RA | 4,562,157 | C→T | 6.1% | intergenic (+425/‑74) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
| RA | 4,571,551 | C→A | 12.3% | D439Y (GAC→TAC) | hsdM ← | DNA methyltransferase M |
| RA | 4,577,795 | C→A | 6.1% | T296T (ACG→ACT) | yjiA ← | GTP‑binding protein, putative GTPase |
| RA | 4,584,381 | G→T | 100% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
| RA | 4,585,338 | A→T | 54.3% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
| RA | 4,596,127 | G→T | 5.7% | intergenic (‑24/+5) | leuP ← / ← leuQ | tRNA‑Leu/tRNA‑Leu |
| RA | 4,600,859 | A→T | 10.2% | intergenic (+39/‑354) | prfC → / → osmY | peptide chain release factor RF‑3/periplasmic protein |
| RA | 4,604,195 | A→G | 5.3% | intergenic (+118/+302) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,604,261 | A→G | 6.1% | intergenic (+184/+236) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,605,290 | A→T | 5.8% | L24Q (CTG→CAG) | yjjW ← | putative pyruvate formate lyase activating enzyme |
| RA | 4,619,126 | C→A | 6.4% | W405L (TGG→TTG) | yjjK ← | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 4,625,288 | T→C | 47.6% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 373899 | 375070 | 1172 | 111 [109] | [109] 110 | frmA–[frmR] | frmA,[frmR] |
| * | * | ÷ | CP009273 | 4100634 | 4101474 | 841 | 112 [109] | [107] 114 | tpiA | tpiA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 244 (0.910) | 189 (0.710) | 111/278 | NT | 43.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 360278 | NA (NA) | 7221 (28.610) +TTAATTAA |
195/262 | NT | 96.6% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 361823 | 268 (1.000) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
| * | ? | CP009273 | 360652 = | 389 (1.450) | 7150 (40.020) +46 bp |
186/186 | NT | 97.1% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 1317577 | 256 (0.960) | coding (101/882 nt) | yciV | PHP domain protein | |||||
| * | ? | CP009273 | 376716 = | NA (NA) | 215 (0.800) | 123/278 | NT | 99.5% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 566411 = | 1 (0.000) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
| * | ? | CP009273 | = 378046 | NA (NA) | 200 (0.750) | 104/278 | NT | 99.5% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
| ? | CP009273 | = 566415 | 1 (0.000) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
| * | ? | CP009273 | 1203246 = | 23 (0.090) | 168 (0.710) | 95/246 | NT | 91.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 13 (0.050) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 22 (0.080) | 263 (1.110) | 122/246 | NT | 94.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 13 (0.050) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1635219 = | 4 (0.020) | 186 (0.700) | 106/274 | NT | 97.9% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
| ? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 1635223 | 8 (0.030) | 198 (0.740) | 113/278 | NT | 96.1% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
| ? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 2164908 | NA (NA) | 7 (0.030) | 6/276 | NT | 7.0% | intergenic (+29/+2) | insF1/gatR | IS3 transposase B/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| ? | CP009273 | 3763272 = | 94 (0.350) | intergenic (+129/‑36) | yibV/yibU | pseudogene/pseudogene, H repeat‑associated protein | |||||