mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 74,493 | C→T | 6.8% | intergenic (+81/+17) | PP_0063 → / ← PP_0064 | putative Lipid A biosynthesis lauroyl acyltransferase/conserved protein of unknown function |
| RA | 152,157 | A→T | 13.8% | intergenic (‑51/+43) | PP_0143 ← / ← PP_0144 | conserved membrane protein of unknown function/Metalloprotease, insulinase family |
| RA | 152,158 | A→T | 13.7% | intergenic (‑52/+42) | PP_0143 ← / ← PP_0144 | conserved membrane protein of unknown function/Metalloprotease, insulinase family |
| RA | 195,559 | C→A | 29.3% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 37.8% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,766 | G→C | 11.0% | A424A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,877 | G→A | 8.7% | Q461Q (CAG→CAA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,928 | C→T | 5.5% | D478D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,979 | G→A | 10.7% | V495V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,024 | A→G | 7.6% | V510V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,027 | T→C | 14.6% | T511T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 17.0% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 12.8% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,195 | G→C | 12.1% | T567T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,234 | T→C | 18.2% | T580T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,285 | T→C | 6.7% | T597T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 16.9% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 28.5% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 21.3% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 20.2% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,438 | T→C | 24.1% | S648S (AGT→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,459 | C→A | 18.7% | T655T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,489 | T→C | 16.3% | N665N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,495 | G→C | 16.3% | T667T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,579 | G→A | 45.1% | V695V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,672 | G→A | 13.8% | K726K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 40.9% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,906 | T→C | 13.1% | N804N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,927 | A→C | 19.8% | T811T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 13.0% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 9.8% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,005 | G→C | 5.3% | A837A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 9.8% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 23.4% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,128 | T→C | 6.0% | D878D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 20.9% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 6.1% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,224 | A→G | 11.0% | V910V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,227 | C→A | 9.6% | T911T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,248 | G→A | 12.6% | Q918Q (CAG→CAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,428 | T→C | 9.6% | D978D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,429 | G→A | 8.1% | A979T (GCC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 6.2% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 11.5% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 8.9% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 26.9% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 12.6% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,834 | T→C | 10.8% | L1114L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,318 | T→G | 11.8% | T1608T (ACT→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,360 | T→C | 8.2% | A1622A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,550 | T→C | 12.3% | L1686L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,915 | T→C | 9.8% | F1807F (TTT→TTC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,032 | G→A | 8.1% | V1846V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 200,113 | T→C | 18.1% | N1873N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,373 | T→C | 12.0% | T2293T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,385 | T→C | 11.1% | N2297N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,859 | G→C | 16.6% | A2455A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,555 | T→C | 6.7% | N2687N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 202,579 | C→T | 7.5% | T2695T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 202,580 | G→A | 5.6% | E2696K (GAG→AAG) ‡ | PP_0168 → | putative surface adhesion protein |
| RA | 202,581 | A→C | 5.2% | E2696A (GAG→GCG) ‡ | PP_0168 → | putative surface adhesion protein |
| RA | 202,582 | G→C | 5.6% | E2696D (GAG→GAC) ‡ | PP_0168 → | putative surface adhesion protein |
| RA | 203,470 | T→C | 9.0% | V2992V (GTT→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 205,450 | C→T | 8.3% | G3652G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 205,465 | G→A | 7.3% | P3657P (CCG→CCA) | PP_0168 → | putative surface adhesion protein |
| RA | 205,483 | G→A | 6.3% | Q3663Q (CAG→CAA) | PP_0168 → | putative surface adhesion protein |
| RA | 205,504 | T→C | 7.3% | D3670D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 206,311 | G→C | 7.3% | V3939V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| RA | 207,343 | T→C | 17.0% | A4283A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 211,003 | A→G | 8.6% | P5503P (CCA→CCG) | PP_0168 → | putative surface adhesion protein |
| RA | 212,134 | T→C | 10.1% | D5880D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,542 | G→C | 6.9% | T6016T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,617 | C→G | 8.3% | T6041T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 213,808 | T→A | 9.8% | A6438A (GCT→GCA) | PP_0168 → | putative surface adhesion protein |
| RA | 213,820 | T→C | 8.6% | G6442G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 213,874 | T→G | 11.0% | T6460T (ACT→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 226,907 | C→G | 8.0% | A61G (GCC→GGC) | PP_0175 → | putative transcriptional regulator |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 388,722 | T→A | 8.0% | L198Q (CTG→CAG) | soxB → | sarcosine oxidase subunit beta |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 653,157 | Δ1 bp | 8.2% | coding (1586/1962 nt) | ctpL ← | Methyl‑accepting chemotaxis protein CtpL |
| RA | 699,722 | A→G | 55.8% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 951,297 | Δ1 bp | 5.6% | coding (128/2019 nt) | cyoB → | cytochrome bo terminal oxidase subunit I |
| RA | 1,070,246:1 | +G | 92.6% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,070,246:2 | +A | 91.4% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,129,431 | A→T | 6.8% | A40A (GCT→GCA) | gcvP‑I ← | glycine dehydrogenase |
| RA | 1,142,138 | A→G | 6.8% | S97S (AGT→AGC) | arcD‑I ← | arginine/ornithine antiporter |
| RA | 1,142,159 | T→C | 5.3% | S90S (TCA→TCG) | arcD‑I ← | arginine/ornithine antiporter |
| RA | 1,327,121 | C→T | 48.7% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,530,173 | A→C | 93.4% | *399S (TAA→TCA) noncoding (62/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| JC | 1,531,732 | Δ107 bp | 22.4% | coding (38‑144/630 nt) | PP_1344 ← | conserved protein of unknown function |
| RA | 1,637,325 | A→T | 20.0% | intergenic (+34/+32) | pdxJ → / ← PP_1437 | Pyridoxine 5'‑phosphate synthase/Heavy metal sensor histidine kinase |
| RA | 1,637,326 | A→T | 20.0% | intergenic (+35/+31) | pdxJ → / ← PP_1437 | Pyridoxine 5'‑phosphate synthase/Heavy metal sensor histidine kinase |
| JC | 1,780,067 | Δ62 bp | 20.3% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,926,514 | C→A | 5.6% | D118Y (GAC→TAC) | PP_1726 ← | ABC transporter, periplasmic binding protein |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,087,274 | G→A | 12.3% | intergenic (+87/+831) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,670 | C→T | 11.9% | intergenic (+483/+435) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,672 | C→G | 11.9% | intergenic (+485/+433) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,676 | G→C | 11.4% | intergenic (+489/+429) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,677 | C→A | 11.7% | intergenic (+490/+428) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,690 | G→A | 14.7% | intergenic (+503/+415) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,256,290 | C→T | 9.3% | intergenic (+350/‑354) | asd → / → PP_1990 | Aspartate‑semialdehyde dehydrogenase/transposase |
| RA | 2,414,820 | T→C | 12.6% | L6L (CTT→CTC) | PP_2115 → | conserved protein of unknown function |
| RA | 2,550,125 | G→A | 57.8% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 3,029,290 | A→G | 7.4% | T315A (ACC→GCC) ‡ | pcaY → | aromatic acid chemoreceptor |
| RA | 3,029,291 | C→T | 7.4% | T315I (ACC→ATC) ‡ | pcaY → | aromatic acid chemoreceptor |
| RA | 3,029,295 | A→T | 7.0% | E316D (GAA→GAT) | pcaY → | aromatic acid chemoreceptor |
| RA | 3,029,296 | A→T | 7.0% | M317L (ATG→TTG) | pcaY → | aromatic acid chemoreceptor |
| RA | 3,029,299 | A→G | 6.9% | T318A (ACC→GCC) ‡ | pcaY → | aromatic acid chemoreceptor |
| RA | 3,029,300 | C→T | 7.0% | T318I (ACC→ATC) ‡ | pcaY → | aromatic acid chemoreceptor |
| RA | 3,782,598 | G→C | 6.7% | A179P (GCC→CCC) | nikC → | nickel ABC transporter permease subunit |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,022,306 | G→C | 9.8% | intergenic (‑1/+667) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,022,307 | G→C | 10.0% | intergenic (‑2/+666) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,022,806 | C→G | 14.0% | intergenic (‑501/+167) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,022,807 | C→G | 13.9% | intergenic (‑502/+166) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,146,136 | C→A | 6.6% | P73P (CCC→CCA) | PP_3651 → | Sensor histidine kinase/response regulator |
| RA | 4,348,705 | A→G | 49.3% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,475,554 | G→C | 6.1% | intergenic (‑19/+45) | PP_3964 ← / ← PP_3965 | transposase/transposase |
| RA | 4,475,563 | G→A | 6.2% | intergenic (‑28/+36) | PP_3964 ← / ← PP_3965 | transposase/transposase |
| RA | 4,475,564 | G→T | 6.2% | intergenic (‑29/+35) | PP_3964 ← / ← PP_3965 | transposase/transposase |
| RA | 4,475,598 | T→A | 7.6% | intergenic (‑63/+1) | PP_3964 ← / ← PP_3965 | transposase/transposase |
| RA | 4,475,611 | A→G | 8.3% | I108I (ATT→ATC) | PP_3965 ← | transposase |
| RA | 4,475,617 | A→G | 8.5% | G106G (GGT→GGC) | PP_3965 ← | transposase |
| RA | 4,475,620 | G→A | 8.2% | G105G (GGC→GGT) | PP_3965 ← | transposase |
| RA | 4,475,623 | T→C | 7.9% | A104A (GCA→GCG) | PP_3965 ← | transposase |
| RA | 4,475,626 | A→G | 7.4% | G103G (GGT→GGC) | PP_3965 ← | transposase |
| RA | 4,475,632 | G→T | 7.8% | R101R (CGC→CGA) | PP_3965 ← | transposase |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,635,590 | T→C | 46.3% | K56E (AAA→GAA) | uvrY ← | two‑componenent system BarA/UvrY ‑ regulatory subunit |
| RA | 4,689,618 | A→C | 10.1% | V166V (GTA→GTC) | yejF → | microcin C transporter ‑ ATP binding subunit |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,228:1 | +C | 17.1% | intergenic (+465/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 82.9% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,230 | A→G | 17.1% | intergenic (+467/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,231 | C→G | 82.9% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,232 | C→T | 17.1% | intergenic (+469/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,234 | C→T | 72.8% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,235 | C→T | 25.7% | intergenic (+472/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,236 | G→T | 68.5% | intergenic (+473/+280) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,237 | C→G | 68.6% | intergenic (+474/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,238 | C→G | 31.4% | intergenic (+475/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,239 | A→G | 68.6% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,240 | A→C | 31.4% | intergenic (+477/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,241 | C→T | 31.4% | intergenic (+478/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,243 | G→T | 65.7% | intergenic (+480/+273) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,244 | C→G | 65.7% | intergenic (+481/+272) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 65.7% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,254:1 | +T | 18.4% | intergenic (+491/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 81.6% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 81.6% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,258 | A→G | 18.4% | intergenic (+495/+258) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | C→G | 81.6% | intergenic (+497/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,261 | A→C | 81.6% | intergenic (+498/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| JC | 4,808,177 | Δ103 bp | 45.7% | intergenic (‑286/‑167) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,964,454 | C→T | 100% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| RA | 5,064,851 | G→T | 5.9% | T49K (ACG→AAG) | PP_4461 ← | Major facilitator family transporter |
| JC | 5,201,568 | Δ98 bp | 42.9% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| RA | 5,368,670 | G→T | 6.9% | R14S (CGC→AGC) | greA ← | Transcription elongation factor GreA |
| RA | 5,368,671 | A→C | 6.1% | A13A (GCT→GCG) | greA ← | Transcription elongation factor GreA |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,988,809 | G→A | 13.0% | intergenic (+103/‑443) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,889 | C→A | 25.6% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,894 | C→T | 21.6% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,895 | A→G | 21.9% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,905 | T→C | 18.9% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,911 | Δ1 bp | 18.5% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486334 | 486439–486413 | 80–106 | 15 [11] | [11] 13 | apaG/rsmA | CO2+/MG2+ efflux protein/Ribosomal RNA small subunit methyltransferase A |
| * | * | ÷ | AE015451 | 790181 | 790354 | 174 | 13 [12] | [12] 15 | PP_0676 | putative Transcription elongation factor |
| * | * | ÷ | AE015451 | 926365 | 926523 | 159 | 13 [11] | [11] 14 | PP_0805 | Outer membrane efflux protein |
| * | * | ÷ | AE015451 | 965552 | 965684 | 133 | 13 [12] | [11] 13 | ptxC | putative phosphonate transport system permease protein PtxC |
| * | * | ÷ | AE015451 | 1367531 | 1367920 | 390 | 13 [12] | [12] 15 | [PP_1193] | [PP_1193] |
| * | * | ÷ | AE015451 | 1421691 | 1422050 | 360 | 13 [11] | [12] 13 | PP_1246 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 1544240 | 1544477–1544458 | 219–238 | 14 [12] | [10] 13 | [mdfA] | [mdfA] |
| * | * | ÷ | AE015451 | 1691069 | 1691236 | 168 | 13 [12] | [12] 13 | PP_1487 | conserved protein of unknown function |
| * | * | ÷ | AE015451 | 1841680 | 1841954 | 275 | 13 [11] | [12] 13 | ldhA | D‑lactate dehydrogenase |
| * | * | ÷ | AE015451 | 2038217 | 2038427 | 211 | 14 [12] | [12] 16 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2095150 | 2095334 | 185 | 13 [11] | [12] 13 | [alaA] | [alaA] |
| * | * | ÷ | AE015451 | 2142300 | 2142523 | 224 | 13 [12] | [12] 13 | [PP_1897] | [PP_1897] |
| * | * | ÷ | AE015451 | 2388175 | 2388394 | 220 | 13 [10] | [11] 14 | [pyrD] | [pyrD] |
| * | * | ÷ | AE015451 | 2478338 | 2478558 | 221 | 13 [9] | [12] 13 | PP_2172 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 2865352 | 2865560 | 209 | 13 [11] | [10] 14 | [gllP]–[glllA] | [gllP],[glllA] |
| * | * | ÷ | AE015451 | 2960757 | 2961021 | 265 | 14 [12] | [11] 13 | PP_2590 | Outer membrane ferric siderophore receptor |
| * | * | ÷ | AE015451 | 3443471 | 3443670 | 200 | 13 [12] | [12] 15 | PP_3062 | putative Pyocin R2_PP, tail length determination protein |
| * | * | ÷ | AE015451 | 3579931 | 3580051 | 121 | 13 [12] | [11] 19 | benR | BenABC operon transcriptional activator |
| * | * | ÷ | AE015451 | 4150091–4150096 | 4150229 | 134–139 | 13 [12] | [12] 13 | PP_3654/PP_3655 | leucine‑responsive regulatory protein/Cytosine/purine/uracil/thiamine/allantoin permease family protein |
| * | * | ÷ | AE015451 | 4839240 | 4839365 | 126 | 14 [12] | [12] 13 | [PP_4254] | [PP_4254] |
| * | * | ÷ | AE015451 | 5696588 | 5696753 | 166 | 13 [11] | [12] 16 | pyrC'/hslV | dihydroorotase‑like protein/peptidase component of the ATP‑dependent HslVU protease |
| * | * | ÷ | AE015451 | 5816924 | 5817137 | 214 | 15 [12] | [11] 13 | [pilT] | [pilT] |
| * | * | ÷ | AE015451 | 5835102 | 5835278 | 177 | 13 [12] | [11] 13 | [PP_5113]–[PP_5114] | [PP_5113],[PP_5114] |
| * | * | ÷ | AE015451 | 5858340 | 5858563 | 224 | 13 [12] | [12] 14 | PP_5134 | conserved protein of unknown function |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 76184 = | 35 (0.700) | 4 (0.080) | 4/322 | NT | 8.8% | coding (26/1374 nt) | trkA | NAD‑binding component of TrK potassium transporter |
| ? | AE015451 | 76333 = | 50 (1.050) | coding (1211/1311 nt) | rsmB | Ribosomal RNA small subunit methyltransferase B | |||||
| * | ? | AE015451 | 338180 = | 47 (0.940) | 3 (0.060) | 3/330 | NT | 5.8% | coding (389/690 nt) | PP_0280 | Amino acid ABC transporter, permease protein |
| ? | AE015451 | 338227 = | 51 (1.040) | coding (342/690 nt) | PP_0280 | Amino acid ABC transporter, permease protein | |||||
| * | ? | AE015451 | = 381484 | 43 (0.860) | 4 (0.080) | 4/318 | NT | 9.4% | coding (1061/1626 nt) | PP_0317 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | = 381669 | 37 (0.790) | coding (876/1626 nt) | PP_0317 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | 444537 = | 60 (1.200) | 5 (0.110) | 5/300 | NT | 8.9% | intergenic (+19/‑155) | bioD/PP_0367 | dethiobiotin synthetase/conserved protein of unknown function |
| ? | AE015451 | 444605 = | 49 (1.100) | intergenic (+87/‑87) | bioD/PP_0367 | dethiobiotin synthetase/conserved protein of unknown function | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 8 (0.170) | 8/324 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | = 707054 | 43 (0.860) | 4 (0.090) | 4/286 | NT | 10.1% | intergenic (+230/+16) | PP_0599/rpsT | paraquat‑inducible protein B/30S ribosomal protein S20 |
| ? | AE015451 | = 707028 | 35 (0.830) | intergenic (+204/+42) | PP_0599/rpsT | paraquat‑inducible protein B/30S ribosomal protein S20 | |||||
| * | ? | AE015451 | 729633 = | 48 (0.960) | 3 (0.060) | 3/318 | NT | 7.1% | coding (163/741 nt) | yfiH | Uncharacterized protein YfiH |
| ? | AE015451 | 729840 = | 33 (0.700) | coding (370/741 nt) | yfiH | Uncharacterized protein YfiH | |||||
| * | ? | AE015451 | 967850 = | 37 (0.740) | 6 (0.130) | 6/308 | NT | 17.5% | intergenic (‑29/+139) | PP_0830/PP_0831 | Acetyltransferase, GNAT family/hypothetical protein |
| ? | AE015451 | 967941 = | 23 (0.500) | intergenic (‑120/+48) | PP_0830/PP_0831 | Acetyltransferase, GNAT family/hypothetical protein | |||||
| * | ? | AE015451 | 975451 = | 40 (0.800) | 3 (0.060) | 3/316 | NT | 7.1% | coding (688/819 nt) | suhB | inositol monophosphatase / glycerol‑2‑phosphatase |
| ? | AE015451 | 975669 = | 41 (0.880) | coding (470/819 nt) | suhB | inositol monophosphatase / glycerol‑2‑phosphatase | |||||
| * | ? | AE015451 | = 1167535 | 35 (0.700) | 6 (0.130) | 5/322 | NT | 14.6% | coding (479/729 nt) | pgl | 6‑phosphogluconolactonase |
| ? | AE015451 | = 1167560 | 37 (0.780) | coding (504/729 nt) | pgl | 6‑phosphogluconolactonase | |||||
| * | ? | AE015451 | = 1187295 | 62 (1.240) | 4 (0.090) | 4/316 | NT | 6.1% | coding (2500/3900 nt) | purL | Phosphoribosylformylglycinamidine synthase |
| ? | AE015451 | = 1187344 | 66 (1.410) | coding (2549/3900 nt) | purL | Phosphoribosylformylglycinamidine synthase | |||||
| * | ? | AE015451 | = 1395221 | 35 (0.700) | 8 (0.180) | 8/306 | NT | 21.7% | coding (958/1047 nt) | ruvB | Holliday junction ATP‑dependent DNA helicase RuvB |
| ? | AE015451 | = 1395205 | 26 (0.570) | coding (942/1047 nt) | ruvB | Holliday junction ATP‑dependent DNA helicase RuvB | |||||
| * | ? | AE015451 | = 1433054 | 29 (0.580) | 5 (0.110) | 5/298 | NT | 14.0% | intergenic (+42/+82) | xenA/PP_1255 | XenA/putative cis‑4‑hydroxy‑D‑proline oxidase |
| ? | AE015451 | = 1433106 | 36 (0.820) | intergenic (+94/+30) | xenA/PP_1255 | XenA/putative cis‑4‑hydroxy‑D‑proline oxidase | |||||
| * | ? | AE015451 | = 1535168 | 59 (1.180) | 3 (0.060) | 3/320 | NT | 5.1% | coding (177/1218 nt) | argJ | Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase |
| ? | AE015451 | = 1535239 | 56 (1.180) | coding (248/1218 nt) | argJ | Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase | |||||
| * | ? | AE015451 | 1614311 = | 46 (0.920) | 3 (0.060) | 3/322 | NT | 7.4% | coding (295/1683 nt) | ushA | 5'‑nucleotidase ‑ 2',3'‑cyclic phosphodiesterase |
| ? | AE015451 | 1614343 = | 31 (0.650) | coding (263/1683 nt) | ushA | 5'‑nucleotidase ‑ 2',3'‑cyclic phosphodiesterase | |||||
| * | ? | AE015451 | 1652529 = | 48 (0.960) | 3 (0.070) | 3/310 | NT | 6.5% | coding (4240/4527 nt) | PP_1449 | conserved exported protein of unknown function |
| ? | AE015451 | 1652543 = | 43 (0.940) | coding (4226/4527 nt) | PP_1449 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 1665468 | 36 (0.720) | 4 (0.080) | 4/322 | NT | 8.8% | coding (400/1206 nt) | PP_1459 | CBS domain protein |
| ? | AE015451 | = 1665563 | 49 (1.030) | coding (305/1206 nt) | PP_1459 | CBS domain protein | |||||
| * | ? | AE015451 | = 1712802 | 49 (0.980) | 4 (0.080) | 4/328 | NT | 7.5% | coding (536/651 nt) | adk | Adenylate kinase |
| ? | AE015451 | = 1712810 | 51 (1.050) | coding (544/651 nt) | adk | Adenylate kinase | |||||
| * | ? | AE015451 | 1737987 = | 53 (1.060) | 32 (0.710) | 27/304 | NT | 35.6% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 68 (1.510) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | 1776718 = | 75 (1.500) | 10 (0.210) | 9/322 | NT | 11.9% | coding (321/501 nt) | PP_1584 | conserved protein of unknown function |
| ? | AE015451 | 1776768 = | 76 (1.590) | coding (371/501 nt) | PP_1584 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 1838824 | 49 (0.980) | 4 (0.080) | 4/322 | NT | 7.5% | coding (345/606 nt) | PP_1644 | NAD(P)H dehydrogenase (quinone) |
| ? | AE015451 | = 1838837 | 52 (1.090) | coding (332/606 nt) | PP_1644 | NAD(P)H dehydrogenase (quinone) | |||||
| * | ? | AE015451 | = 1902261 | 38 (0.760) | 4 (0.080) | 4/320 | NT | 9.6% | coding (2812/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase |
| ? | AE015451 | = 1902441 | 39 (0.820) | coding (2992/4026 nt) | PP_1703 | assimilatory nitrate reductase/sulfite reductase | |||||
| * | ? | AE015451 | 1964719 = | 59 (1.180) | 6 (0.130) | 6/320 | NT | 8.8% | coding (931/2526 nt) | yegE | diguanylate cyclase with phosphodiesterase domain |
| ? | AE015451 | 1964805 = | 68 (1.430) | coding (1017/2526 nt) | yegE | diguanylate cyclase with phosphodiesterase domain | |||||
| * | ? | AE015451 | 2054572 = | 41 (0.820) | 3 (0.060) | 3/324 | NT | 6.9% | coding (54/960 nt) | PP_1829 | Hydrolase, alpha/beta fold family |
| ? | AE015451 | 2054587 = | 42 (0.880) | coding (39/960 nt) | PP_1829 | Hydrolase, alpha/beta fold family | |||||
| * | ? | AE015451 | = 2250804 | 54 (1.080) | 3 (0.070) | 3/302 | NT | 5.9% | coding (135/1434 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | AE015451 | = 2250786 | 48 (1.070) | coding (117/1434 nt) | leuC | 3‑isopropylmalate dehydratase large subunit | |||||
| * | ? | AE015451 | = 2252681 | 57 (1.140) | 3 (0.060) | 3/322 | NT | 5.2% | coding (582/645 nt) | leuD | 3‑isopropylmalate dehydratase small subunit |
| ? | AE015451 | = 2252794 | 56 (1.170) | intergenic (+50/‑69) | leuD/PP_1987 | 3‑isopropylmalate dehydratase small subunit/Methlytransferase, UbiE/COQ5 family | |||||
| * | ? | AE015451 | = 2326992 | 37 (0.740) | 5 (0.110) | 5/314 | NT | 10.3% | coding (312/1962 nt) | PP_2045 | Metallo‑beta‑lactamase family protein |
| ? | AE015451 | = 2327139 | 53 (1.140) | coding (165/1962 nt) | PP_2045 | Metallo‑beta‑lactamase family protein | |||||
| * | ? | AE015451 | 2414803 = | 29 (0.580) | 11 (0.230) | 9/318 | NT | 29.2% | coding (1/198 nt) | PP_2115 | conserved protein of unknown function |
| ? | AE015451 | 4022806 = | 26 (0.550) | intergenic (‑501/+167) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 2457184 | 50 (1.000) | 3 (0.060) | 3/312 | NT | 5.2% | coding (255/999 nt) | PP_2150 | putative Thiamine biosynthesis lipoprotein |
| ? | AE015451 | = 2457331 | 64 (1.390) | coding (402/999 nt) | PP_2150 | putative Thiamine biosynthesis lipoprotein | |||||
| * | ? | AE015451 | = 2472115 | 28 (0.560) | 12 (0.250) | 12/324 | NT | 27.6% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 36 (0.750) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | = 2494736 | 29 (0.580) | 3 (0.060) | 3/320 | NT | 8.2% | intergenic (‑99/‑56) | PP_2187/PP_2188 | Universal stress protein family/putative tRNA‑(Ms(2)io(6)a)‑hydroxylase |
| ? | AE015451 | = 2494831 | 40 (0.840) | coding (40/618 nt) | PP_2188 | putative tRNA‑(Ms(2)io(6)a)‑hydroxylase | |||||
| * | ? | AE015451 | 2571158 = | 38 (0.760) | 4 (0.080) | 4/322 | NT | 10.2% | coding (1279/1311 nt) | dctA‑III | C4‑dicarboxylate transport protein |
| ? | AE015451 | 2571261 = | 34 (0.710) | coding (1176/1311 nt) | dctA‑III | C4‑dicarboxylate transport protein | |||||
| * | ? | AE015451 | 2631895 = | 39 (0.780) | 3 (0.060) | 3/324 | NT | 7.5% | coding (1360/2397 nt) | lon‑II | DNA‑binding, ATP‑dependent protease |
| ? | AE015451 | 2631913 = | 37 (0.770) | coding (1378/2397 nt) | lon‑II | DNA‑binding, ATP‑dependent protease | |||||
| * | ? | AE015451 | 2639792 = | 33 (0.660) | 3 (0.060) | 3/322 | NT | 9.2% | coding (865/1479 nt) | PP_2310 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 2639812 = | 28 (0.590) | coding (845/1479 nt) | PP_2310 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | = 3191362 | 33 (0.660) | 3 (0.060) | 3/324 | NT | 8.4% | coding (637/1254 nt) | PP_2800 | putative Diaminobutyrate‑2‑oxoglutarate transaminase |
| ? | AE015451 | = 3191369 | 34 (0.710) | coding (630/1254 nt) | PP_2800 | putative Diaminobutyrate‑2‑oxoglutarate transaminase | |||||
| * | ? | AE015451 | = 3191826 | 36 (0.720) | 3 (0.060) | 3/314 | NT | 8.9% | coding (173/1254 nt) | PP_2800 | putative Diaminobutyrate‑2‑oxoglutarate transaminase |
| ? | AE015451 | = 3191814 | 28 (0.600) | coding (185/1254 nt) | PP_2800 | putative Diaminobutyrate‑2‑oxoglutarate transaminase | |||||
| * | ? | AE015451 | = 3220484 | 42 (0.840) | 5 (0.100) | 5/324 | NT | 10.8% | coding (528/1161 nt) | PP_5539 | conserved exported protein of unknown function |
| ? | AE015451 | = 3220485 | 42 (0.880) | coding (527/1161 nt) | PP_5539 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 3272245 | 41 (0.820) | 5 (0.110) | 5/320 | NT | 11.3% | intergenic (‑161/‑14) | PP_2869/PP_2870 | Oxidoreductase, FMN‑binding/putative spermidine/putrescine‑binding periplasmic protein |
| ? | AE015451 | = 3272356 | 40 (0.840) | coding (98/1044 nt) | PP_2870 | putative spermidine/putrescine‑binding periplasmic protein | |||||
| * | ? | AE015451 | 3398276 = | 45 (0.900) | 7 (0.150) | 6/320 | NT | 14.8% | coding (757/819 nt) | PP_3002 | shikimate dehydrogenase‑related enzyme |
| ? | AE015451 | 3398411 = | 38 (0.800) | coding (69/438 nt) | aroQ‑III | 3‑dehydroquinate dehydratase 3, type II | |||||
| * | ? | AE015451 | 3409928 = | 57 (1.140) | 6 (0.120) | 6/328 | NT | 9.7% | intergenic (‑494/‑42) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
| ? | AE015451 | = 3450711 | 56 (1.150) | intergenic (‑125/+258) | PP_5558/PP_3069 | putative transcriptional xre family of phage origin/Outer membrane autotransporter | |||||
| * | ? | AE015451 | = 3456325 | 29 (0.580) | 3 (0.060) | 3/316 | NT | 8.6% | coding (138/480 nt) | eco | Ecotin |
| ? | AE015451 | = 3456502 | 37 (0.790) | intergenic (‑40/+16) | eco/hbdH | Ecotin/3‑hydroxybutyrate dehydrogenase | |||||
| * | ? | AE015451 | = 3550927 | 67 (1.340) | 4 (0.080) | 4/320 | NT | 6.3% | coding (79/957 nt) | PP_3135 | putative Glycosyl transferase |
| ? | AE015451 | = 3550994 | 55 (1.160) | coding (146/957 nt) | PP_3135 | putative Glycosyl transferase | |||||
| * | ? | AE015451 | = 3799802 | 51 (1.020) | 3 (0.060) | 3/326 | NT | 5.7% | coding (137/1125 nt) | PP_3360 | conserved membrane protein of unknown function |
| ? | AE015451 | = 3799806 | 50 (1.040) | coding (141/1125 nt) | PP_3360 | conserved membrane protein of unknown function | |||||
| * | ? | AE015451 | = 3970610 | NA (NA) | 4 (0.090) | 4/306 | NT | NA | coding (529/1536 nt) | PP_3501 | transposase |
| ? | AE015451 | = 3970594 | NA (NA) | coding (513/1536 nt) | PP_3501 | transposase | |||||
| * | ? | AE015451 | 4120689 = | 40 (0.800) | 3 (0.060) | 3/320 | NT | 6.6% | coding (1105/1344 nt) | adhB | Alcohol dehydrogenase cytochrome c subunit |
| ? | AE015451 | 4120802 = | 47 (0.990) | coding (1218/1344 nt) | adhB | Alcohol dehydrogenase cytochrome c subunit | |||||
| * | ? | AE015451 | 4123926 = | 53 (1.060) | 5 (0.110) | 5/316 | NT | 9.8% | coding (401/1746 nt) | PP_3628 | Choline/carnitine/betaine transporter family protein |
| ? | AE015451 | 4123974 = | 42 (0.900) | coding (449/1746 nt) | PP_3628 | Choline/carnitine/betaine transporter family protein | |||||
| * | ? | AE015451 | 4192459 = | 64 (1.280) | 10 (0.230) | 9/298 | NT | 14.6% | intergenic (+65/‑584) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | 4192479 = | 61 (1.380) | intergenic (+85/‑564) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | = 4192478 | 63 (1.260) | 5 (0.110) | 5/298 | NT | 7.9% | intergenic (+84/‑565) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | = 4192458 | 61 (1.380) | intergenic (+64/‑585) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | 4371608 = | 64 (1.280) | 12 (0.400) | 12/204 | NT | 23.2% | intergenic (‑193/‑1379) | PP_5636/PP_3849 | protein of unknown function/putative calcium‑binding protein, hemolysin‑type |
| ? | AE015451 | = 4427498 | 41 (1.360) | intergenic (+82/+20) | PP_3920/PP_t61 | putative Phage integrase/tRNA‑Cys | |||||
| * | ? | AE015451 | = 4375251 | 66 (1.320) | 5 (0.110) | 5/314 | NT | 7.3% | coding (49/264 nt) | PP_3850 | conserved protein of unknown function |
| ? | AE015451 | = 4375349 | 65 (1.400) | coding (187/258 nt) | PP_5637 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 4385743 | 60 (1.200) | 4 (0.080) | 4/318 | NT | 6.7% | coding (169/387 nt) | PP_3861 | Phage FluMu protein gp46 |
| ? | AE015451 | = 4385845 | 55 (1.170) | coding (67/387 nt) | PP_3861 | Phage FluMu protein gp46 | |||||
| * | ? | AE015451 | 4399867 = | 78 (1.560) | 4 (0.080) | 4/322 | NT | 5.3% | coding (23/972 nt) | PP_3878 | putative Phage minor capsid protein C |
| ? | AE015451 | 4399923 = | 68 (1.430) | coding (1235/1272 nt) | PP_3879 | Phage portal protein, HK97 family | |||||
| * | ? | AE015451 | 4432452 = | 58 (1.160) | 3 (0.060) | 3/322 | NT | 6.0% | coding (473/822 nt) | PP_3927 | Methyltransferase type 12 |
| ? | AE015451 | 4432501 = | 39 (0.820) | coding (424/822 nt) | PP_3927 | Methyltransferase type 12 | |||||
| * | ? | AE015451 | 4568611 = | 40 (0.800) | 4 (0.080) | 4/322 | NT | 9.4% | coding (541/2070 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | AE015451 | 4568628 = | 39 (0.820) | coding (558/2070 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | AE015451 | = 4579332 | 51 (1.020) | 3 (0.060) | 3/318 | NT | 6.3% | coding (779/2211 nt) | glgB | 1,4‑alpha‑glucan branching enzyme |
| ? | AE015451 | = 4579374 | 42 (0.890) | coding (737/2211 nt) | glgB | 1,4‑alpha‑glucan branching enzyme | |||||
| * | ? | AE015451 | 4791752 = | 40 (0.800) | 3 (0.060) | 3/312 | NT | 8.5% | coding (2088/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) |
| ? | AE015451 | 4791887 = | 28 (0.610) | coding (1953/6525 nt) | pvdI | non‑ribosomal peptide synthetase (subunit of ferribactin synthase) | |||||
| * | ? | AE015451 | = 4808179 | 7 (0.140) | 15 (0.340) | 9/298 | NT | 43.4% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4945203 = | 33 (0.750) | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4944756 | 68 (1.360) | 4 (0.090) | 4/312 | NT | 6.9% | intergenic (+116/+682) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945407 = | 45 (0.970) | intergenic (+767/+31) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945197 | 37 (0.740) | 11 (0.230) | 11/324 | NT | 20.5% | intergenic (+557/+241) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945389 = | 50 (1.040) | intergenic (+749/+49) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945203 | 37 (0.740) | 9 (0.190) | 8/320 | NT | 18.7% | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945621 = | 43 (0.910) | coding (960/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945209 | 36 (0.720) | 12 (0.250) | 12/320 | NT | 22.0% | intergenic (+569/+229) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945455 = | 51 (1.080) | coding (1126/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | 5053070 = | 50 (1.000) | 5 (0.110) | 4/318 | NT | 10.5% | coding (1381/1833 nt) | gsiA | glutathione ABC transporter ATP‑binding subunit |
| ? | AE015451 | 5053123 = | 38 (0.810) | coding (1328/1833 nt) | gsiA | glutathione ABC transporter ATP‑binding subunit | |||||
| * | ? | AE015451 | = 5202880 | 59 (1.180) | 7 (0.150) | 6/320 | NT | 11.8% | coding (1187/2043 nt) | PP_4583 | putative Peptidase |
| ? | AE015451 | = 5202955 | 49 (1.030) | coding (1262/2043 nt) | PP_4583 | putative Peptidase | |||||
| * | ? | AE015451 | = 5415514 | 51 (1.020) | 5 (0.110) | 5/314 | NT | 9.6% | coding (263/1392 nt) | gabP‑V | gamma‑aminobutyrate permease |
| ? | AE015451 | = 5415639 | 47 (1.010) | coding (138/1392 nt) | gabP‑V | gamma‑aminobutyrate permease | |||||
| * | ? | AE015451 | 5432919 = | 31 (0.620) | 3 (0.060) | 3/318 | NT | 10.7% | coding (2345/2529 nt) | hrpB | ATP‑dependent helicase HrpB |
| ? | AE015451 | 5433100 = | 21 (0.450) | coding (2164/2529 nt) | hrpB | ATP‑dependent helicase HrpB | |||||
| * | ? | AE015451 | = 5455113 | 49 (0.980) | 4 (0.080) | 4/318 | NT | 7.8% | coding (480/762 nt) | PP_4792 | conserved exported protein of unknown function |
| ? | AE015451 | = 5455238 | 48 (1.020) | coding (355/762 nt) | PP_4792 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 5638869 | 44 (0.880) | 5 (0.110) | 5/316 | NT | 10.4% | coding (1403/1443 nt) | PP_4949 | putative peptidase, TldD/PmbA family |
| ? | AE015451 | = 5639034 | 45 (0.960) | coding (126/1320 nt) | PP_4950 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5988668 | 50 (1.000) | 11 (0.230) | 8/324 | NT | 21.8% | coding (1750/1788 nt) | kefB‑III | glutathione‑regulated potassium/H+ antiporter |
| ? | AE015451 | 5988956 = | 31 (0.650) | intergenic (+250/‑296) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988757 | 36 (0.720) | 7 (0.150) | 7/322 | NT | 18.6% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988979 = | 27 (0.570) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988771 | 44 (0.880) | 12 (0.250) | 11/322 | NT | 25.0% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 30 (0.630) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | 6050758 = | 58 (1.160) | 3 (0.060) | 3/326 | NT | 5.3% | coding (1620/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase |
| ? | AE015451 | 6050799 = | 51 (1.060) | coding (1661/2109 nt) | spoT | bifunctional (p)ppGpp synthase/hydrolase | |||||
| * | ? | AE015451 | 6131444 = | 57 (1.140) | 4 (0.080) | 4/326 | NT | 7.4% | coding (78/1080 nt) | copB‑II | copper resistance protein B |
| ? | AE015451 | 6131466 = | 45 (0.930) | coding (56/1080 nt) | copB‑II | copper resistance protein B | |||||