mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,139 | G→A | 8.8% | D136N (GAT→AAT) ‡ | thrC → | L‑threonine synthase |
| RA | 4,140 | A→T | 7.9% | D136V (GAT→GTT) ‡ | thrC → | L‑threonine synthase |
| RA | 4,141 | T→C | 8.9% | D136D (GAT→GAC) ‡ | thrC → | L‑threonine synthase |
| RA | 18,905 | A→C | 5.1% | E64A (GAG→GCG) | nhaR → | transcriptional activator of nhaA |
| RA | 85,337 | G→T | 6.9% | intergenic (+25/‑293) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
| RA | 85,338 | A→C | 6.0% | intergenic (+26/‑292) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
| RA | 87,881 | A→G | 6.5% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 6.3% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 6.4% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 125,817 | A→G | 6.4% | K41K (AAA→AAG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 125,820 | C→T | 13.2% | A42A (GCC→GCT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,069 | G→C | 7.1% | V125V (GTG→GTC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,075 | T→G | 11.9% | V127V (GTT→GTG) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,081 | T→C | 11.4% | D129D (GAT→GAC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 126,093 | T→C | 15.9% | A133A (GCT→GCC) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 134,166 | A→G | 6.0% | Q851R (CAG→CGG) | acnB → | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase |
| RA | 134,169 | A→G | 6.3% | Y852C (TAC→TGC) ‡ | acnB → | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase |
| RA | 134,170 | C→T | 6.3% | Y852Y (TAC→TAT) ‡ | acnB → | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase |
| RA | 134,173 | C→T | 6.2% | T853T (ACC→ACT) | acnB → | aconitate hydratase 2; aconitase B; 2‑methyl‑cis‑aconitate hydratase |
| RA | 237,410 | G→C | 5.4% | D26H (GAT→CAT) | yafT → | lipoprotein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 265,583 | A→G | 5.4% | intergenic (‑40/+37) | ykfF ← / ← ykfB | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 304,083 | G→T | 6.6% | P34T (CCC→ACC) | ykgJ ← | UPF0153 cysteine cluster protein |
| RA | 304,085 | A→C | 6.5% | I33S (ATT→AGT) | ykgJ ← | UPF0153 cysteine cluster protein |
| RA | 304,088 | G→T | 6.4% | T32N (ACT→AAT) | ykgJ ← | UPF0153 cysteine cluster protein |
| RA | 304,090 | A→C | 6.9% | G31G (GGT→GGG) | ykgJ ← | UPF0153 cysteine cluster protein |
| RA | 312,303 | T→G | 6.3% | V64V (GTT→GTG) | ykgL → | uncharacterized protein |
| RA | 312,304 | A→T | 7.2% | I65L (ATA→TTA) ‡ | ykgL → | uncharacterized protein |
| RA | 312,306 | A→T | 7.1% | I65I (ATA→ATT) ‡ | ykgL → | uncharacterized protein |
| RA | 312,308 | A→T | 6.3% | N66I (AAC→ATC) | ykgL → | uncharacterized protein |
| RA | 318,649 | T→C | 5.3% | intergenic (‑82/+27) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,651 | T→A | 5.8% | intergenic (‑84/+25) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,652 | T→A | 6.1% | intergenic (‑85/+24) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 318,654 | G→A | 6.2% | intergenic (‑87/+22) | rclB ← / ← rclA | reactive chlorine species (RCS) stress resistance periplasmic protein/reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 448,364 | G→T | 5.6% | I99I (ATC→ATA) | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 448,367 | A→C | 7.4% | V98V (GTT→GTG) ‡ | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 448,368 | A→T | 6.3% | V98D (GTT→GAT) ‡ | cyoC ← | cytochrome o ubiquinol oxidase subunit III |
| RA | 500,194 | C→A | 7.1% | Q24K (CAA→AAA) | gsk → | inosine/guanosine kinase |
| RA | 543,207 | A→T | 6.9% | intergenic (+174/+54) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 6.9% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 566,354 | A→G | 8.9% | pseudogene (23/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 566,367 | C→T | 8.4% | pseudogene (10/279 nt) | exoD ← | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related |
| RA | 569,161 | A→C | 6.3% | D87A (GAC→GCC) | ybcK → | DLP12 prophage; putative recombinase |
| RA | 580,697 | T→C | 5.8% | intergenic (‑252/‑137) | ylcI ← / → nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| RA | 608,037 | A→G | 5.1% | intergenic (+49/‑28) | hokE → / → insL1 | toxic polypeptide, small/IS186 transposase |
| RA | 675,408 | C→A | 10.6% | H131N (CAC→AAC) | ybeL → | DUF1451 family protein |
| RA | 699,559 | A→G | 5.5% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 715,756 | G→T | 5.3% | Q115H (CAG→CAT) | ybfP → | lipoprotein |
| RA | 736,615 | T→C | 7.8% | pseudogene (171/240 nt) | ybfQ → | pseudogene, H repeat‑associated protein |
| RA | 787,782 | G→C | 5.2% | intergenic (‑187/+15) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 826,369 | A→C | 9.5% | V295G (GTC→GGC) | ybhS ← | putative ABC transporter permease |
| RA | 847,213 | A→T | 12.2% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 12.3% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 12.5% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 850,993 | T→C | 6.4% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 6.3% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 7.1% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 6.8% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 887,392 | T→A | 8.7% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 887,393 | T→A | 9.5% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 915,080 | G→C | 7.3% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 7.2% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 940,754 | G→A | 6.1% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 987,420 | A→C | 6.8% | intergenic (‑438/+165) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,421 | A→T | 7.3% | intergenic (‑439/+164) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,424 | A→T | 9.1% | intergenic (‑442/+161) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,560 | G→C | 6.5% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 6.3% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 993,775 | A→C | 8.0% | R90R (CGT→CGG) | ssuB ← | aliphatic sulfonate ABC transporter ATPase |
| RA | 994,627 | G→T | 6.4% | A69E (GCG→GAG) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,630 | C→T | 6.2% | R68Q (CGG→CAG) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,632 | C→G | 6.3% | W67C (TGG→TGC) ‡ | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,634 | A→G | 6.0% | W67R (TGG→CGG) ‡ | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,637 | A→C | 6.4% | S66A (TCC→GCC) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 998,448 | T→A | 6.3% | intergenic (+41/‑42) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,449 | G→A | 6.4% | intergenic (+42/‑41) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 998,450 | T→C | 6.6% | intergenic (+43/‑40) | elfA → / → elfD | laminin‑binding fimbrin subunit/putative periplasmic pilin chaperone |
| RA | 1,018,249 | G→C | 5.6% | S17R (AGC→AGG) ‡ | ycbZ ← | putative peptidase |
| RA | 1,018,251 | T→G | 5.6% | S17R (AGC→CGC) ‡ | ycbZ ← | putative peptidase |
| RA | 1,018,254 | C→A | 5.5% | D16Y (GAT→TAT) | ycbZ ← | putative peptidase |
| RA | 1,018,256 | G→C | 5.5% | T15S (ACC→AGC) | ycbZ ← | putative peptidase |
| RA | 1,045,731 | G→T | 5.4% | P25T (CCT→ACT) | gfcE ← | putative O‑antigen capsule outer membrane auxillary protein export channel |
| RA | 1,100,791 | G→C | 5.3% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 7.1% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,102,948 | T→C | 5.3% | K83K (AAA→AAG) ‡ | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,102,949 | T→A | 5.3% | K83I (AAA→ATA) ‡ | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,102,951 | G→A | 5.5% | I82I (ATC→ATT) | csgD ← | csgBAC operon transcriptional regulator |
| RA | 1,136,026 | G→T | 5.3% | V155L (GTA→TTA) ‡ | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
| RA | 1,136,028 | A→C | 5.3% | V155V (GTA→GTC) ‡ | flgH → | flagellar protein of basal‑body outer‑membrane L ring |
| RA | 1,158,519 | T→G | 6.8% | P217P (CCT→CCG) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,181,760 | A→G | 5.8% | intergenic (‑35/+23) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,181,761 | A→G | 5.8% | intergenic (‑36/+22) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,181,765 | C→T | 6.6% | intergenic (‑40/+18) | ymfA ← / ← potD | DUF3592 family inner membrane protein/spermidine/putrescine ABC transporter periplasmic binding protein |
| RA | 1,214,497 | T→A | 5.3% | I327F (ATC→TTC) | bluF ← | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; inactive c‑di‑GMP phosphodiesterase‑like EAL domain protein |
| RA | 1,232,484 | A→G | 7.1% | intergenic (+30/+16) | umuC → / ← dsbB | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity/oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I |
| RA | 1,286,787 | G→A | 14.3% | intergenic (+261/+279) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,793 | A→G | 15.0% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,302,834 | G→C | 6.5% | intergenic (+21/‑65) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,836 | G→C | 6.5% | intergenic (+23/‑63) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,410,986 | A→G | 7.9% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,990 | T→A | 9.2% | intergenic (+106/+23) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,991 | T→A | 7.3% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,995 | C→T | 8.0% | intergenic (+111/+18) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,426,178 | A→T | 7.2% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,417 | T→C | 6.2% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 6.2% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 6.6% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 6.5% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,446,785 | T→A | 10.7% | T167S (ACA→TCA) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,446,786 | T→A | 8.8% | E166D (GAA→GAT) ‡ | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,446,787 | T→A | 9.2% | E166V (GAA→GTA) ‡ | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,466,630 | G→C | 15.9% | pseudogene (1239/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,639 | C→T | 21.7% | pseudogene (1248/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,488,057 | C→G | 8.9% | intergenic (+22/‑175) | ydcF → / → aldA | DUF218 superfamily protein, SAM‑binding/aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,502,089 | C→G | 6.5% | H176Q (CAC→CAG) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,504,884 | T→C | 6.9% | intergenic (+19/+21) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,888 | T→G | 8.2% | intergenic (+23/+17) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,889 | C→A | 7.0% | intergenic (+24/+16) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,504,893 | G→A | 7.5% | intergenic (+28/+12) | insQ → / ← ydcO | IS609 transposase B/BenE family inner membrane putative transporter |
| RA | 1,530,490 | T→C | 7.9% | intergenic (+86/‑96) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,496 | G→T | 12.2% | intergenic (+92/‑90) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,499 | A→C | 11.7% | intergenic (+95/‑87) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,530,505 | G→A | 11.3% | intergenic (+101/‑81) | ydcD → / → yncI | putative immunity protein for RhsE/pseudogene |
| RA | 1,543,229 | G→T | 12.9% | L278M (CTG→ATG) | narU ← | nitrate/nitrite transporter |
| RA | 1,543,230 | C→G | 11.3% | M277I (ATG→ATC) ‡ | narU ← | nitrate/nitrite transporter |
| RA | 1,543,231 | A→C | 12.3% | M277R (ATG→AGG) ‡ | narU ← | nitrate/nitrite transporter |
| RA | 1,579,563 | G→T | 10.7% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 11.4% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 11.3% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 11.3% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,693,417 | G→C | 6.3% | L283V (CTG→GTG) | uidB ← | glucuronide transporter |
| RA | 1,696,187 | A→G | 7.0% | intergenic (‑116/+275) | uidA ← / ← uidR | beta‑D‑glucuronidase/transcriptional repressor |
| RA | 1,697,242 | Δ1 bp | 6.1% | intergenic (‑190/+31) | uidR ← / ← hdhA | transcriptional repressor/7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| RA | 1,697,246 | A→G | 5.7% | intergenic (‑194/+27) | uidR ← / ← hdhA | transcriptional repressor/7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| RA | 1,697,248:1 | +T | 5.7% | intergenic (‑196/+25) | uidR ← / ← hdhA | transcriptional repressor/7‑alpha‑hydroxysteroid dehydrogenase, NAD‑dependent |
| RA | 1,708,662 | C→G | 16.7% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,709,006 | A→G | 21.5% | A696A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,726,994 | C→G | 7.3% | S112R (AGC→AGG) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,726,995 | C→T | 7.2% | L113L (CTG→TTG) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,727,000 | A→G | 7.4% | Q114Q (CAA→CAG) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,727,001 | C→G | 7.5% | P115A (CCT→GCT) | nemA → | chromate reductase, quinone reductase, FMN‑linked; N‑Ethylmaleimide reductase; old yellow enzyme |
| RA | 1,736,097 | T→A | 7.2% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 7.0% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,743,155 | C→G | 5.1% | D30H (GAC→CAC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,163 | T→C | 5.1% | E27G (GAG→GGG) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,743,165 | C→G | 5.3% | V26V (GTG→GTC) | ribC ← | riboflavin synthase, alpha subunit |
| RA | 1,777,968 | A→G | 5.7% | E258G (GAA→GGA) | ydiO → | putative acyl‑CoA dehydrogenase |
| RA | 1,788,507 | T→G | 10.1% | Y25D (TAT→GAT) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,788,510 | C→A | 10.2% | P26T (CCC→ACC) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,797,369 | G→T | 10.2% | I192I (ATC→ATA) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,972,794 | C→A | 11.1% | intergenic (‑103/+42) | tar ← / ← cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| RA | 1,972,795 | G→T | 9.1% | intergenic (‑104/+41) | tar ← / ← cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| RA | 1,972,797 | A→T | 9.0% | intergenic (‑106/+39) | tar ← / ← cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| RA | 1,972,799 | A→C | 8.4% | intergenic (‑108/+37) | tar ← / ← cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| RA | 1,972,800 | T→G | 8.3% | intergenic (‑109/+36) | tar ← / ← cheW | methyl‑accepting chemotaxis protein II/purine‑binding chemotaxis protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,987,857 | C→T | 14.0% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 11.9% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 12.3% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 12.4% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,992,083 | G→C | 8.1% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 2,019,460 | G→A | 100% | V359I (GTC→ATC) | fliK → | flagellar hook‑length control protein |
| RA | 2,024,611 | T→A | 6.2% | intergenic (+20/+24) | rcsA → / ← dsrB | transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein |
| RA | 2,074,691 | C→G | 8.2% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,081,057 | A→G | 5.7% | V69A (GTG→GCG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,081,058 | C→T | 5.8% | V69M (GTG→ATG) ‡ | sbmC ← | DNA gyrase inhibitor |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,197,658 | T→A | 5.8% | pseudogene (1185/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| RA | 2,259,686 | A→G | 6.7% | intergenic (‑390/+33) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,690 | G→A | 6.9% | intergenic (‑394/+29) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,693 | A→T | 6.2% | intergenic (‑397/+26) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,696 | T→C | 6.3% | intergenic (‑400/+23) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,700 | C→T | 6.1% | intergenic (‑404/+19) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,304,649 | C→T | 19.3% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,323,275 | T→A | 7.3% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 7.1% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 6.7% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 7.1% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 7.3% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,325,037:1 | +T | 8.1% | coding (282/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,325,042 | Δ1 bp | 7.7% | coding (287/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,357,653 | A→G | 5.4% | L250L (CTA→CTG) | yfaD → | transposase_31 family protein |
| JC JC | 2,375,828 | IS186 (+) +4 bp | 100% | coding (132‑135/963 nt) | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,390,012 | Δ1 bp | 5.2% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 5.1% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,406,376 | C→G | 7.0% | C89S (TGC→TCC) ‡ | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,406,377 | A→C | 6.3% | C89G (TGC→GGC) ‡ | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,406,378 | G→C | 7.2% | A88A (GCC→GCG) ‡ | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,406,379 | G→T | 7.2% | A88D (GCC→GAC) ‡ | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,406,380 | C→G | 6.9% | A88P (GCC→CCC) ‡ | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,414,689 | C→G | 6.9% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,416,941 | A→G | 6.4% | intergenic (+50/‑140) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,943 | C→G | 6.3% | intergenic (+52/‑138) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,945 | C→T | 6.3% | intergenic (+54/‑136) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,424,327 | C→T | 5.2% | S61S (TCG→TCA) | hisP ← | histidine ABC transporter ATPase |
| RA | 2,430,871 | C→T | 7.9% | intergenic (‑108/+151) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,430,876 | A→T | 7.9% | intergenic (‑113/+146) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,430,878 | A→T | 7.8% | intergenic (‑115/+144) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,430,879 | A→T | 6.8% | intergenic (‑116/+143) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,430,881 | A→T | 9.1% | intergenic (‑118/+141) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,430,886 | A→G | 9.0% | intergenic (‑123/+136) | cvpA ← / ← dedD | colicin V production protein/membrane‑anchored periplasmic protein involved in septation |
| RA | 2,434,094 | G→A | 6.6% | R216R (CGC→CGT) | dedA ← | DedA family inner membrane protein |
| RA | 2,434,097 | T→C | 6.3% | A215A (GCA→GCG) | dedA ← | DedA family inner membrane protein |
| RA | 2,440,295 | A→T | 6.2% | intergenic (‑175/+90) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,296 | T→G | 6.3% | intergenic (‑176/+89) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,297 | C→A | 6.2% | intergenic (‑177/+88) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,298 | A→T | 7.3% | intergenic (‑178/+87) | yfcJ ← / ← fabB | putative arabinose efflux transporter/3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,460,614 | C→T | 8.7% | intergenic (‑145/+36) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,460,618 | C→T | 7.4% | intergenic (‑149/+32) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,460,619 | A→T | 8.4% | intergenic (‑150/+31) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,460,620 | A→G | 7.4% | intergenic (‑151/+30) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,460,624 | A→G | 8.8% | intergenic (‑155/+26) | fadI ← / ← yfcZ | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit/UPF0381 family protein |
| RA | 2,474,878 | T→C | 5.2% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 5.3% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,497,023 | A→T | 9.4% | intergenic (+31/+34) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,497,024 | T→G | 9.5% | intergenic (+32/+33) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,497,025 | C→A | 9.1% | intergenic (+33/+32) | ypdK → / ← alaC | inner membrane protein/glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,508,433 | Δ1 bp | 6.3% | intergenic (‑191/+28) | fryB ← / ← glk | putative enzyme IIB component of PTS/glucokinase |
| RA | 2,508,438:1 | +T | 6.5% | intergenic (‑196/+23) | fryB ← / ← glk | putative enzyme IIB component of PTS/glucokinase |
| RA | 2,553,463 | A→C | 6.1% | E80A (GAA→GCA) | hemF → | coproporphyrinogen III oxidase |
| RA | 2,553,465 | C→A | 6.5% | L81I (CTT→ATT) ‡ | hemF → | coproporphyrinogen III oxidase |
| RA | 2,553,466 | T→G | 5.3% | L81R (CTT→CGT) ‡ | hemF → | coproporphyrinogen III oxidase |
| RA | 2,553,468 | G→T | 6.0% | A82S (GCC→TCC) | hemF → | coproporphyrinogen III oxidase |
| RA | 2,560,321 | C→T | 5.2% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,587,006 | A→C | 7.4% | T426P (ACG→CCG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,007 | C→T | 5.2% | T426M (ACG→ATG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,010 | T→A | 6.2% | L427Q (CTG→CAG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,013 | A→G | 5.3% | Q428R (CAG→CGG) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,014 | G→T | 5.3% | Q428H (CAG→CAT) ‡ | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,637,234 | C→A | 7.7% | K41N (AAG→AAT) ‡ | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,637,235 | T→G | 7.8% | K41T (AAG→ACG) ‡ | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,673,783 | G→A | 7.2% | intergenic (+15/+33) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,784 | C→A | 7.1% | intergenic (+16/+32) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,790 | G→T | 6.9% | intergenic (+22/+26) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,791 | A→C | 6.9% | intergenic (+23/+25) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,797 | T→G | 7.7% | intergenic (+29/+19) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,673,798 | T→C | 7.7% | intergenic (+30/+18) | yphA → / ← yphB | DoxX family inner membrane protein/mutarotase superfamily protein, YphB family |
| RA | 2,705,871 | A→T | 5.4% | V418V (GTT→GTA) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,738,928 | A→C | 5.3% | intergenic (+23/+20) | pheA → / ← tyrA | chorismate mutase and prephenate dehydratase, P‑protein/fused chorismate mutase T/prephenate dehydrogenase |
| RA | 2,777,571 | A→G | 7.2% | D40G (GAC→GGC) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,573 | A→G | 7.2% | T41A (ACG→GCG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,574 | C→T | 7.0% | T41M (ACG→ATG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,576 | C→T | 7.0% | P42S (CCG→TCG) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,799,634 | A→G | 6.7% | intergenic (+21/+16) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,799,635 | T→A | 6.7% | intergenic (+22/+15) | alaE → / ← ygaC | alanine exporter, alanine‑inducible, stress‑responsive/uncharacterized protein |
| RA | 2,814,174 | T→A | 7.6% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 6.9% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,823,838 | C→A | 6.9% | intergenic (‑69/+11) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,823,839 | T→G | 7.1% | intergenic (‑70/+10) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,900,322 | C→T | 8.1% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,902,495 | A→C | 5.2% | G200G (GGA→GGC) | ygcE → | putative kinase |
| RA | 2,911,007 | G→A | 8.7% | R29C (CGT→TGT) | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,008 | A→T | 8.2% | H28Q (CAT→CAA) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,009 | T→C | 8.6% | H28R (CAT→CGT) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,919,903 | C→G | 5.1% | G282R (GGC→CGC) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,919,905 | G→C | 5.1% | T281S (ACC→AGC) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
| RA | 2,931,830 | C→T | 5.4% | intergenic (+20/+35) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,931,831 | A→T | 5.2% | intergenic (+21/+34) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,931,832 | A→T | 5.2% | intergenic (+22/+33) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,931,833 | A→G | 5.2% | intergenic (+23/+32) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,931,836 | T→G | 9.2% | intergenic (+26/+29) | ygdG → / ← fucO | Ssb‑binding protein, misidentified as ExoIX/L‑1,2‑propanediol oxidoreductase |
| RA | 2,980,742 | A→G | 5.8% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,744 | A→T | 7.0% | intergenic (‑109/+20) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,980,746 | C→T | 5.9% | intergenic (‑111/+18) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,987,103 | C→T | 6.7% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 6.8% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 6.7% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,988,137 | T→A | 5.7% | L201* (TTA→TAA) | yqeH → | putative LuxR family transcriptional regulator |
| RA | 2,991,798 | Δ1 bp | 5.0% | intergenic (+39/‑296) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,991,799 | Δ1 bp | 5.1% | intergenic (+40/‑295) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,991,805:1 | +T | 5.3% | intergenic (+46/‑289) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,991,805:2 | +G | 5.3% | intergenic (+46/‑289) | ygeG → / → ygeH | SycD‑like chaperone family TPR‑repeat‑containing protein/putative transcriptional regulator |
| RA | 2,993,889 | T→A | 6.8% | intergenic (+33/‑50) | ygeI → / → pbl | uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family |
| RA | 2,993,896 | T→A | 6.9% | intergenic (+40/‑43) | ygeI → / → pbl | uncharacterized protein/pseudogene, peptidoglycan‑binding enzyme family |
| RA | 3,033,624 | A→G | 7.6% | intergenic (+11/+33) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,627 | T→A | 9.2% | intergenic (+14/+30) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,628 | T→A | 7.0% | intergenic (+15/+29) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,631 | C→T | 7.4% | intergenic (+18/+26) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,034,807 | C→T | 5.8% | G123D (GGC→GAC) | lysS ← | lysine tRNA synthetase, constitutive |
| RA | 3,042,314 | A→G | 8.4% | intergenic (+21/+175) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| RA | 3,042,315 | T→A | 9.1% | intergenic (+22/+174) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| RA | 3,042,317 | T→A | 11.3% | intergenic (+24/+172) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| RA | 3,042,319 | T→A | 9.2% | intergenic (+26/+170) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| RA | 3,042,320 | C→T | 8.3% | intergenic (+27/+169) | ygfZ → / ← yqfA | iron‑sulfur cluster repair protein, plumbagin resistance/hemolysin III family HylIII inner membrane protein |
| RA | 3,042,791 | A→G | 5.9% | W120R (TGG→CGG) | yqfA ← | hemolysin III family HylIII inner membrane protein |
| RA | 3,066,308 | A→T | 5.9% | I289N (ATT→AAT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,309 | T→A | 6.7% | I289F (ATT→TTT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,310 | A→T | 5.8% | H288Q (CAT→CAA) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,136,629 | C→A | 6.3% | intergenic (‑258/+34) | pitB ← / ← gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,136,632 | C→A | 6.7% | intergenic (‑261/+31) | pitB ← / ← gss | phosphate transporter/glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,238,464 | A→C | 5.9% | intergenic (+167/‑116) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,250,989 | G→C | 6.3% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 5.5% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,287,116 | G→T | 5.5% | intergenic (+91/‑310) | agaI → / → yraH | galactosamine‑6‑phosphate isomerase/putative fimbrial‑like adhesin protein |
| RA | 3,288,033 | T→G | 6.4% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,289,127 | A→G | 5.3% | Q105R (CAG→CGG) | yraJ → | putative outer membrane protein |
| RA | 3,322,698 | A→G | 5.9% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 5.9% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 5.9% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 5.9% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,328,182 | A→T | 8.0% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 6.9% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 6.9% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,437,908 | T→A | 5.3% | intergenic (+14/‑116) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,909 | A→T | 5.5% | intergenic (+15/‑115) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,910 | A→T | 5.5% | intergenic (+16/‑114) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,437,911 | T→A | 7.1% | intergenic (+17/‑113) | trkA → / → mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| RA | 3,448,276 | T→A | 7.8% | intergenic (‑127/+38) | rplN ← / ← rpsQ | 50S ribosomal subunit protein L14/30S ribosomal subunit protein S17 |
| RA | 3,469,041 | A→G | 8.8% | S271S (AGT→AGC) | chiA ← | periplasmic endochitinase |
| RA | 3,469,050 | G→A | 9.4% | N268N (AAC→AAT) | chiA ← | periplasmic endochitinase |
| RA | 3,471,357 | C→T | 7.6% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 7.1% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 7.5% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 8.5% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,477,878 | T→A | 6.8% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,483,242 | G→C | 7.7% | S14T (AGC→ACC) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,243 | C→T | 7.7% | S14S (AGC→AGT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,244 | A→G | 7.7% | S15G (AGT→GGT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,483,245 | G→C | 7.7% | S15T (AGT→ACT) ‡ | yheT → | UPF0017 family putative hydrolase |
| RA | 3,488,983 | C→A | 7.7% | V400L (GTG→TTG) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,488,989 | G→T | 7.1% | H398N (CAC→AAC) | argD ← | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| RA | 3,504,458 | A→G | 5.0% | Y136C (TAT→TGT) | frlR → | putative DNA‑binding transcriptional regulator |
| RA | 3,530,671 | A→C | 5.7% | intergenic (+19/+44) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,672 | G→C | 6.0% | intergenic (+20/+43) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,530,673 | G→C | 5.1% | intergenic (+21/+42) | hslO → / ← yhgE | heat shock protein Hsp33/DUF4153 family putative inner membrane protein |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,663,547 | T→C | 5.1% | intergenic (+20/+343) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,555 | G→T | 5.9% | intergenic (+28/+335) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,556 | A→C | 5.6% | intergenic (+29/+334) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,558 | G→T | 5.1% | intergenic (+31/+332) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,663,564 | G→A | 5.2% | intergenic (+37/+326) | mdtF → / ← gadW | anaerobic multidrug efflux transporter, ArcA‑regulated/transcriptional activator of gadA and gadBC; repressor of gadX |
| RA | 3,719,804 | T→C | 5.8% | intergenic (+36/‑245) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,805 | G→A | 5.9% | intergenic (+37/‑244) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,719,806 | A→T | 6.5% | intergenic (+38/‑243) | yiaG → / → cspA | HTH_CROC1 family putative transcriptional regulator/RNA chaperone and antiterminator, cold‑inducible |
| RA | 3,748,108 | T→A | 9.3% | F342Y (TTC→TAC) | lyxK → | L‑xylulose kinase |
| RA | 3,748,110 | C→A | 7.5% | L343M (CTG→ATG) ‡ | lyxK → | L‑xylulose kinase |
| RA | 3,748,111 | T→G | 7.7% | L343R (CTG→CGG) ‡ | lyxK → | L‑xylulose kinase |
| RA | 3,748,113 | T→A | 7.8% | Y344N (TAC→AAC) | lyxK → | L‑xylulose kinase |
| RA | 3,757,939 | Δ1 bp | 6.2% | intergenic (‑112/+78) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,757,942 | C→A | 7.4% | intergenic (‑115/+75) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,757,947:1 | +T | 6.2% | intergenic (‑120/+70) | yiaY ← / ← selB | L‑threonine dehydrogenase/selenocysteinyl‑tRNA‑specific translation factor |
| RA | 3,774,207 | C→T | 5.4% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 6.2% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 6.2% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,798,235 | A→T | 6.6% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,809,359 | T→G | 5.8% | F274V (TTC→GTC) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| RA | 3,811,212 | C→T | 6.9% | intergenic (‑60/+38) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,216 | C→T | 6.8% | intergenic (‑64/+34) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,217 | G→C | 6.9% | intergenic (‑65/+33) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,218 | G→C | 8.1% | intergenic (‑66/+32) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,219 | A→G | 6.5% | intergenic (‑67/+31) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,811,223 | A→G | 6.4% | intergenic (‑71/+27) | mutM ← / ← rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| RA | 3,815,107 | T→A | 5.9% | intergenic (+17/+20) | slmA → / ← pyrE | nucleoid occlusion factor, anti‑FtsZ division inhibitor/orotate phosphoribosyltransferase |
| RA | 3,832,188 | A→T | 5.1% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 5.2% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 5.2% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| JC JC | 3,890,075 | IS5 (–) +4 bp | 100% | coding (1346‑1349/1416 nt) | tnaA → | tryptophanase/L‑cysteine desulfhydrase, PLP‑dependent |
| RA | 3,906,826 | T→C | 6.3% | intergenic (‑259/+27) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,828 | A→T | 6.2% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,830 | G→A | 6.1% | intergenic (‑263/+23) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,911,816 | C→T | 5.5% | intergenic (‑291/+23) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,911,819 | T→G | 5.2% | intergenic (‑294/+20) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,911,825 | A→G | 5.5% | intergenic (‑300/+14) | pstS ← / ← glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,959,515 | T→A | 6.5% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,973,862 | T→G | 5.6% | G85G (GGT→GGG) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
| RA | 4,046,782 | G→T | 6.1% | intergenic (‑180/‑184) | yihG ← / → polA | inner membrane protein, inner membrane acyltransferase/5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,046,784 | A→T | 6.2% | intergenic (‑182/‑182) | yihG ← / → polA | inner membrane protein, inner membrane acyltransferase/5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,046,785 | A→T | 6.7% | intergenic (‑183/‑181) | yihG ← / → polA | inner membrane protein, inner membrane acyltransferase/5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,046,787 | A→C | 6.2% | intergenic (‑185/‑179) | yihG ← / → polA | inner membrane protein, inner membrane acyltransferase/5' to 3' DNA polymerase and 3' to 5'/5' to 3' exonuclease |
| RA | 4,142,433 | A→C | 5.3% | intergenic (‑212/‑97) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,171,648 | A→C | 6.6% | noncoding (12/120 nt) | rrfB → | 5S ribosomal RNA of rrnB operon |
| RA | 4,177,171 | T→A | 8.0% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 7.2% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,185,540 | C→T | 71.2% | P64L (CCG→CTG) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,187,214 | A→G | 23.6% | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,213,182 | A→T | 5.0% | intergenic (+23/‑52) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,232,564 | G→T | 9.2% | P224T (CCG→ACG) | lysC ← | lysine‑sensitive aspartokinase 3 |
| RA | 4,245,108 | T→G | 5.2% | intergenic (‑33/+121) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,110 | T→G | 5.2% | intergenic (‑35/+119) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,111 | C→A | 5.8% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,261,349 | G→A | 6.6% | intergenic (+43/‑320) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,287,734 | C→T | 7.2% | intergenic (‑363/‑30) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,287,735 | A→T | 7.9% | intergenic (‑364/‑29) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,287,736 | A→G | 7.3% | intergenic (‑365/‑28) | acs ← / → nrfA | acetyl‑CoA synthetase/nitrite reductase, formate‑dependent, cytochrome |
| RA | 4,296,060 | C→T | 39.6% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,326,887 | A→T | 11.7% | intergenic (‑153/‑248) | yjdM ← / → crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,326,888 | A→T | 12.1% | intergenic (‑154/‑247) | yjdM ← / → crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,326,891 | A→T | 11.2% | intergenic (‑157/‑244) | yjdM ← / → crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,326,892 | A→T | 11.2% | intergenic (‑158/‑243) | yjdM ← / → crfC | zinc‑ribbon family protein/clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,336,974 | A→T | 8.3% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,979 | A→C | 8.4% | M18R (ATG→AGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,983 | G→T | 7.6% | L17M (CTG→ATG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,988 | A→T | 7.8% | V15D (GTC→GAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,377,792 | A→T | 6.8% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,392,506 | C→G | 13.2% | noncoding (35/76 nt) | glyX → | tRNA‑Gly |
| RA | 4,400,330 | C→G | 5.5% | L15V (CTG→GTG) | hfq → | global sRNA chaperone; HF‑I, host factor for RNA phage Q beta replication |
| RA | 4,406,129 | T→C | 100% | intergenic (+144/‑61) | purA → / → nsrR | adenylosuccinate synthetase/nitric oxide‑sensitive repressor for NO regulon |
| RA | 4,410,026 | G→A | 7.5% | intergenic (+20/‑107) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,034 | G→A | 8.0% | intergenic (+28/‑99) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,037 | T→C | 8.0% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,519,311 | A→G | 8.6% | intergenic (+87/+27) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,313 | C→A | 8.6% | intergenic (+89/+25) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,314 | T→G | 8.0% | intergenic (+90/+24) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,519,316 | C→T | 7.7% | intergenic (+92/+22) | insB1 → / ← yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| RA | 4,532,534 | G→C | 5.4% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 5.1% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| JC JC | 4,640,551 | IS1 (–) +9 bp | 100% | intergenic (+9/‑383) | yjjY → / → yjtD | uncharacterized protein/putative methyltransferase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 772988 | 774241 | 1254 | 35 [33] | [34] 35 | [cydA]–[cydX] | [cydA],cydB,[cydX] |
| * | * | ÷ | NC_000913 | 1037687 | 1039305 | 1619 | 35 [34] | [34] 35 | cbdA–[cbdB] | cbdA,[cbdB] |
| * | * | ÷ | NC_000913 | 2403917 | 2404664 | 748 | 35 [34] | [32] 36 | nuoB–[nuoA] | nuoB,[nuoA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 67363 | 63 (0.830) | 5 (0.070) | 5/256 | NT | 7.4% | coding (975/1503 nt) | araA | L‑arabinose isomerase |
| ? | NC_000913 | = 67394 | 67 (0.950) | coding (944/1503 nt) | araA | L‑arabinose isomerase | |||||
| * | ? | NC_000913 | = 224374 | NA (NA) | 6 (0.080) | 5/264 | NT | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224403 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 224544 | NA (NA) | 3 (0.040) | 3/266 | NT | NA | noncoding (774/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224574 | NA (NA) | noncoding (804/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 224573 | NA (NA) | 6 (0.080) | 4/274 | NT | NA | noncoding (803/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224622 | NA (NA) | noncoding (852/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 224891 = | NA (NA) | 4 (0.050) | 4/270 | NT | NA | noncoding (1121/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 224923 = | NA (NA) | noncoding (1153/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225136 = | NA (NA) | 5 (0.070) | 3/272 | NT | NA | noncoding (1366/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225187 = | NA (NA) | noncoding (1417/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 258469 = | NA (NA) | 4 (0.060) | 3/260 | NT | 8.5% | noncoding (207/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1049890 | 46 (0.600) | noncoding (113/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 270109 = | 59 (0.770) | 4 (0.060) | 4/262 | NT | 6.7% | coding (74/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 270171 = | NA (NA) | coding (12/894 nt) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 5 (0.070) | 5/264 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274578 = | NA (NA) | 4 (0.060) | 3/264 | NT | NA | noncoding (572/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.070) | 3/260 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 274695 | NA (NA) | 7 (0.090) | 5/270 | NT | NA | noncoding (455/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 274727 | NA (NA) | noncoding (423/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274946 = | NA (NA) | 3 (0.040) | 3/274 | NT | NA | noncoding (204/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274982 = | NA (NA) | noncoding (168/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 316046 | NA (NA) | 5 (0.070) | 4/262 | NT | NA | noncoding (818/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316070 | NA (NA) | noncoding (842/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 316193 = | NA (NA) | 6 (0.080) | 3/260 | NT | NA | noncoding (965/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 316230 = | NA (NA) | noncoding (1002/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 9 (0.120) | 7/264 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381681 = | NA (NA) | 6 (0.080) | 6/260 | NT | NA | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381753 = | NA (NA) | noncoding (494/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 5 (0.070) | 5/260 | NT | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381898 = | NA (NA) | 5 (0.070) | 4/266 | NT | NA | noncoding (639/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381933 = | NA (NA) | noncoding (674/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 487090 = | 77 (1.010) | 4 (0.050) | 4/268 | NT | 5.3% | coding (555/3363 nt) | mscK | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| ? | NC_000913 | 487137 = | 69 (0.940) | coding (602/3363 nt) | mscK | mechanosensitive channel protein, intermediate conductance, K+ regulated | |||||
| * | ? | NC_000913 | 559162 = | 72 (0.940) | 5 (0.070) | 4/266 | NT | 6.6% | coding (189/693 nt) | sfmC | putative periplasmic pilus chaperone |
| ? | NC_000913 | 559214 = | 72 (0.990) | coding (241/693 nt) | sfmC | putative periplasmic pilus chaperone | |||||
| * | ? | NC_000913 | 666600 = | 72 (0.940) | 5 (0.070) | 5/260 | NT | 7.4% | coding (1618/1902 nt) | mrdA | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis |
| ? | NC_000913 | 666663 = | 57 (0.800) | coding (1555/1902 nt) | mrdA | penicillin‑binding protein 2, transpeptidase involved in peptidoglycan synthesis | |||||
| * | ? | NC_000913 | 763317 = | 60 (0.790) | 4 (0.050) | 4/268 | NT | 6.6% | coding (304/1167 nt) | sucC | succinyl‑CoA synthetase, beta subunit |
| ? | NC_000913 | 763347 = | 56 (0.760) | coding (334/1167 nt) | sucC | succinyl‑CoA synthetase, beta subunit | |||||
| * | ? | NC_000913 | 780511 = | 86 (1.130) | 4 (0.060) +AAAAAGT |
4/264 | NT | 6.0% | intergenic (+122/‑43) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | NC_000913 | 780843 = | 45 (0.590) | noncoding (1/76 nt) | lysW | tRNA‑Lys | |||||
| * | ? | NC_000913 | = 781446 | 49 (0.640) | 9 (0.140) | 6/238 | NT | 17.3% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 2521487 = | 44 (0.670) | intergenic (+159/+106) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913 | 847349 = | 60 (0.790) | 3 (0.040) | 3/266 | NT | 5.2% | coding (656/747 nt) | glnH | glutamine transporter subunit |
| ? | NC_000913 | 847395 = | 51 (0.700) | coding (610/747 nt) | glnH | glutamine transporter subunit | |||||
| * | ? | NC_000913 | 996662 = | 62 (0.810) | 4 (0.050) | 3/266 | NT | 6.5% | coding (283/960 nt) | ssuA | aliphatic sulfonate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 996706 = | 55 (0.750) | coding (239/960 nt) | ssuA | aliphatic sulfonate ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 997163 = | 71 (0.930) | 5 (0.070) | 5/268 | NT | 6.9% | coding (350/576 nt) | ssuE | NAD(P)H‑dependent FMN reductase |
| ? | NC_000913 | 997205 = | 66 (0.900) | coding (308/576 nt) | ssuE | NAD(P)H‑dependent FMN reductase | |||||
| * | ? | NC_000913 | = 1053799 | 57 (0.750) | 5 (0.070) | 5/262 | NT | 7.2% | coding (2380/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| ? | NC_000913 | = 1053865 | 75 (1.040) | coding (2314/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR | |||||
| * | ? | NC_000913 | = 1067135 | 63 (0.830) | 6 (0.080) | 4/268 | NT | 8.8% | coding (574/597 nt) | wrbA | NAD(P)H:quinone oxidoreductase |
| ? | NC_000913 | = 1067189 | 63 (0.860) | coding (520/597 nt) | wrbA | NAD(P)H:quinone oxidoreductase | |||||
| * | ? | NC_000913 | = 1113655 | 56 (0.730) | 4 (0.050) | 3/266 | NT | 6.3% | coding (77/228 nt) | yceK | outer membrane integrity lipoprotein |
| ? | NC_000913 | = 1113680 | 66 (0.910) | coding (102/228 nt) | yceK | outer membrane integrity lipoprotein | |||||
| * | ? | NC_000913 | 1207790 = | 26 (0.340) | 30 (0.450) | 28/246 | NT | 56.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 24 (0.360) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 26 (0.340) | 25 (0.370) | 23/246 | NT | 51.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 24 (0.360) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 66 (0.890) | 54/270 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1381497 = | 45 (0.590) | 3 (0.040) | 3/260 | NT | 6.5% | pseudogene (677/957 nt) | ycjV | pseudogene; putative ATP‑binding component of a transport system |
| ? | NC_000913 | 1381555 = | 44 (0.620) | pseudogene (735/957 nt) | ycjV | pseudogene; putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 1396537 = | NA (NA) | 13 (0.180) | 8/266 | NT | 16.3% | noncoding (494/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1428270 | 70 (0.920) | noncoding (525/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1396634 | NA (NA) | 6 (0.080) | 4/264 | NT | 10.3% | noncoding (591/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1428170 = | 55 (0.720) | noncoding (625/1196 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1510306 | 55 (0.720) | 3 (0.040) | 3/264 | NT | 5.7% | coding (304/1407 nt) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| ? | NC_000913 | = 1510345 | 47 (0.650) | coding (343/1407 nt) | ydcR | putative DNA‑binding transcriptional regulator and putative aminotransferase | |||||
| * | ? | NC_000913 | = 1670069 | 57 (0.750) | 5 (0.070) | 4/266 | NT | 8.5% | coding (371/1254 nt) | ynfM | putative arabinose efflux transporter |
| ? | NC_000913 | = 1670122 | 53 (0.730) | coding (424/1254 nt) | ynfM | putative arabinose efflux transporter | |||||
| * | ? | NC_000913 | = 1886391 | 46 (0.600) | 3 (0.040) | 3/260 | NT | 6.5% | coding (547/966 nt) | yeaX | putative YeaWX dioxygenase beta subunit, reductase component |
| ? | NC_000913 | = 1886444 | 43 (0.600) | coding (600/966 nt) | yeaX | putative YeaWX dioxygenase beta subunit, reductase component | |||||
| * | ? | NC_000913 | 2045455 = | 58 (0.760) | 3 (0.040) | 3/262 | NT | 5.1% | coding (518/7077 nt) | yeeJ | putative adhesin |
| ? | NC_000913 | 2045538 = | 58 (0.810) | coding (601/7077 nt) | yeeJ | putative adhesin | |||||
| * | ? | NC_000913 | 2094274 = | 73 (0.960) | 5 (0.070) | 5/262 | NT | 7.1% | coding (807/1068 nt) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| ? | NC_000913 | 2094336 = | 62 (0.860) | coding (869/1068 nt) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase | |||||
| * | ? | NC_000913 | = 2115028 | 69 (0.910) | 4 (0.050) | 3/266 | NT | 5.3% | coding (869/1395 nt) | wcaM | colanic acid biosynthesis protein |
| ? | NC_000913 | = 2115069 | 76 (1.040) | coding (828/1395 nt) | wcaM | colanic acid biosynthesis protein | |||||
| * | ? | NC_000913 | 2161776 = | 71 (0.930) | 4 (0.050) | 4/266 | NT | 5.5% | coding (313/1416 nt) | iceT | putative citrate/iron‑citrate/zinc‑citrate efflux transporter |
| ? | NC_000913 | 2161852 = | 69 (0.950) | coding (389/1416 nt) | iceT | putative citrate/iron‑citrate/zinc‑citrate efflux transporter | |||||
| * | ? | NC_000913 | 2166351 = | 77 (1.010) | 4 (0.060) | 3/260 | NT | 5.5% | coding (684/1362 nt) | yegQ | putative peptidase |
| ? | NC_000913 | 2166410 = | 65 (0.910) | coding (743/1362 nt) | yegQ | putative peptidase | |||||
| * | ? | NC_000913 | = 2335545 | 79 (1.040) | 4 (0.050) | 4/266 | NT | 5.2% | coding (1100/1689 nt) | yfaA | DUF2138 family protein, putative host defense protein |
| ? | NC_000913 | = 2335576 | 71 (0.970) | coding (1069/1689 nt) | yfaA | DUF2138 family protein, putative host defense protein | |||||
| * | ? | NC_000913 | 2728258 = | NA (NA) | 6 (0.080) | 4/264 | NT | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728336 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728327 = | NA (NA) | 3 (0.040) | 3/268 | NT | NA | noncoding (858/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728372 = | NA (NA) | noncoding (813/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2730003 = | NA (NA) | 3 (0.040) | 3/264 | NT | NA | noncoding (1155/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2730041 = | NA (NA) | noncoding (1117/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2740502 | 70 (0.920) | 4 (0.050) | 3/270 | NT | 5.5% | coding (649/1071 nt) | aroF | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
| ? | NC_000913 | = 2740534 | 70 (0.950) | coding (617/1071 nt) | aroF | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible | |||||
| * | ? | NC_000913 | 2841430 = | 60 (0.790) | 3 (0.040) | 3/262 | NT | 5.1% | coding (441/1425 nt) | ascB | cryptic 6‑phospho‑beta‑glucosidase |
| ? | NC_000913 | 2841475 = | 55 (0.770) | coding (486/1425 nt) | ascB | cryptic 6‑phospho‑beta‑glucosidase | |||||
| * | ? | NC_000913 | 3001497 = | 74 (0.970) | 4 (0.050) | 4/268 | NT | 5.6% | coding (1153/2259 nt) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| ? | NC_000913 | 3001530 = | 64 (0.870) | coding (1186/2259 nt) | xdhA | xanthine dehydrogenase, molybdenum binding subunit | |||||
| * | ? | NC_000913 | = 3022580 | 84 (1.100) | 4 (0.060) | 4/262 | NT | 5.0% | coding (1265/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| ? | NC_000913 | = 3022637 | 72 (1.000) | coding (1322/2871 nt) | xdhD | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding | |||||
| * | ? | NC_000913 | 3150737 = | 81 (1.060) | 4 (0.060) | 4/258 | NT | 5.2% | noncoding (184/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites |
| ? | NC_000913 | 3150787 = | 72 (1.020) | noncoding (234/255 nt) | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites | |||||
| * | ? | NC_000913 | 3267361 = | 73 (0.960) | 4 (0.060) | 3/258 | NT | 6.0% | intergenic (‑296/‑19) | tdcA/tdcR | tdc operon transcriptional activator/L‑threonine dehydratase operon activator protein |
| ? | NC_000913 | 3267401 = | 57 (0.810) | coding (22/219 nt) | tdcR | L‑threonine dehydratase operon activator protein | |||||
| * | ? | NC_000913 | = 3336053 | 50 (0.660) | 3 (0.040) | 3/262 | NT | 6.1% | coding (442/1260 nt) | murA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| ? | NC_000913 | = 3336086 | 46 (0.640) | coding (409/1260 nt) | murA | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase | |||||
| * | ? | NC_000913 | = 3341897 | 98 (1.290) | 5 (0.070) | 4/272 | NT | 5.1% | coding (632/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase |
| ? | NC_000913 | = 3341938 | 92 (1.230) | coding (673/987 nt) | kdsD | D‑arabinose 5‑phosphate isomerase | |||||
| * | ? | NC_000913 | = 3737300 | 79 (1.040) | 4 (0.060) | 3/262 | NT | 5.1% | intergenic (‑123/‑197) | bax/malS | putative glucosaminidase/alpha‑amylase |
| ? | NC_000913 | = 3737320 | 73 (1.020) | intergenic (‑143/‑177) | bax/malS | putative glucosaminidase/alpha‑amylase | |||||
| * | ? | NC_000913 | 3808280 = | 64 (0.840) | 3 (0.040) | 3/258 | NT | 5.9% | intergenic (‑182/‑260) | waaQ/waaA | lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
| ? | NC_000913 | 3808320 = | 36 (0.510) | intergenic (‑222/‑220) | waaQ/waaA | lipopolysaccharide core biosynthesis protein/3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) | |||||
| * | ? | NC_000913 | 4104841 = | 74 (0.970) | 4 (0.060) | 3/260 | NT | 5.3% | coding (135/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR |
| ? | NC_000913 | 4104934 = | 74 (1.040) | coding (42/1374 nt) | cpxA | sensory histidine kinase in two‑component regulatory system with CpxR | |||||
| * | ? | NC_000913 | = 4237874 | 73 (0.960) | 4 (0.060) | 4/264 | NT | 5.4% | coding (241/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein |
| ? | NC_000913 | = 4237904 | 70 (0.970) | coding (271/2097 nt) | yjbH | DUF940 family extracellular polysaccharide protein | |||||
| * | ? | NC_000913 | 4298057 = | 85 (1.110) | 5 (0.070) | 4/264 | NT | 5.7% | coding (1310/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit |
| ? | NC_000913 | 4298143 = | 84 (1.160) | coding (1224/2148 nt) | fdhF | formate dehydrogenase‑H, selenopolypeptide subunit | |||||
| * | ? | NC_000913 | = 4636809 | 78 (1.020) | 5 (0.070) | 4/264 | NT | 6.0% | coding (114/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | = 4636834 | 84 (1.160) | coding (139/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||