mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 12,086 | C→T | intergenic (‑300/‑77) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| RA | 119,028 | T→C | V99A (GTC→GCC) | ampD → | 1,6‑anhydro‑N‑acetylmuramoyl‑L‑alanine amidase |
| RA | 257,794 | T→C | intergenic (+23/‑35) | frsA → / → crl | fermentation‑respiration switch protein/RNA polymerase holoenzyme assembly factor Crl |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| MC JC | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| RA | 367,573 | G→A | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor LacI/DNA‑binding transcriptional activator MhpR |
| RA | 380,022 | (G)10→9 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| RA | 765,191 | Δ1 bp | coding (685/723 nt) | mngR ← | DNA‑binding transcriptional repressor MngR |
| RA | 988,499 | G→A | P163S (CCA→TCA) | asnS ← | asparagine‑‑tRNA ligase |
| RA | 1,197,502 | C→T | G11R (GGA→AGA) | ymfD ← | e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,270,811 | C→T | V347M (GTG→ATG) | chaA ← | Na(+)/K(+):H(+) antiporter ChaA |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,382,555 | C→T | S203S (AGC→AGT) | ompG → | outer membrane porin G |
| RA | 1,400,309 | Δ1 bp | coding (1465/1527 nt) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,400,314 | Δ1 bp | coding (1460/1527 nt) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,544,022 | 1 bp→AA | coding (39/1389 nt) | narU ← | nitrate/nitrite transporter NarU |
| RA | 1,742,755 | G→C | P163R (CCG→CGG) | ribC ← | riboflavin synthase |
| MC JC | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| MC JC | 2,101,397 | Δ36,321 bp | [wbbL]–wza | 34 genes [wbbL], insH‑7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza |
|
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,406,141 | A→G | R167R (CGT→CGC) | lrhA ← | DNA‑binding transcriptional dual regulator LrhA |
| RA | 2,756,138 | Δ1 bp | intergenic (+183/‑21) | ssrA → / → intA | tmRNA/CP4‑57 prophage; integrase |
| RA | 2,793,867 | C→A | A378D (GCT→GAT) | gabT → | 4‑aminobutyrate aminotransferase GabT |
| JC | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| RA | 2,843,412 | C→T | R12H (CGT→CAT) | hycH ← | formate hydrogenlyase assembly protein |
| MC JC | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| RA | 3,090,282 | C→T | intergenic (+30/‑65) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| RA | 3,090,341 | Δ1 bp | intergenic (+89/‑6) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| RA | 3,091,305 | A→G | S58G (AGC→GGC) | rsmE → | 16S rRNA m(3)U1498 methyltransferase |
| RA | 3,213,803 | T→C | S253P (TCT→CCT) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,477,150 | C→T | K90K (AAG→AAA) | fkpA ← | peptidyl‑prolyl cis‑trans isomerase FkpA |
| RA | 3,513,003 | A→G | D212D (GAT→GAC) | trpS ← | tryptophan‑‑tRNA ligase |
| RA | 3,720,597 | Δ1 bp | coding (4/153 nt) | hokA ← | small toxic polypeptide |
| RA | 3,801,078 | (T)7→6 | coding (922/1017 nt) | waaJ ← | UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase |
| RA | 3,829,233 | C→A | L97M (CTG→ATG) | xanP → | xanthine:H(+) symporter XanP |
| RA | 3,850,891 | G→A | Q68* (CAA→TAA) | ilvN ← | acetohydroxy acid synthase I subunit IlvN |
| RA | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 4,093,223 | A→G | V72V (GTT→GTC) | rhaM ← | L‑rhamnose mutarotase |
| RA | 4,354,915 | G→A | intergenic (‑198/+39) | lysU ← / ← dtpC | lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase/dipeptide/tripeptide:H(+) symporter DtpC |
| RA | 4,438,124 | T→C | W140R (TGG→CGG) | ytfI → | protein YtfI |
| RA | 4,485,906 | C→A | A16S (GCC→TCC) | pepA ← | aminopeptidase A/I |
| MC JC | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2066205–2066464 | 2080591 | 14128–14387 | 69 [68] | [8] 129 | insH‑6–[yeeA] | insH‑6,yoeA,insD‑3,insC‑3,yoeA,yeeP,isrC,flu,yeeR,yeeS,yeeT,cbeA,cbtA,yeeW,yoeF,yeeX,[yeeA] |
| * | * | ÷ | NC_000913 | 3423691–3424234 | 3428528–3424238 | 5–4838 | 71 [68] | [68] 78 | [rrfD]–[rrsD] | [rrfD],rrlD,alaU,ileU,[rrsD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 8 (0.070) | 92 (0.860) | 48/96 | 0.5 | 86.5% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 21 (0.200) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
| * | ? | NC_000913 | = 167483 | 15 (0.140) | 164 (1.500) | 84/98 | 0.0 | 91.4% | intergenic (+219/‑1) | mrcB/fhuA | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | 173448 = | 16 (0.150) | intergenic (+4/+154) | fhuB/hemL | iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase | |||||
| * | ? | NC_000913 | = 332365 | 13 (0.120) | 168 (1.530) | 82/98 | 0.0 | 92.8% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 366308 = | 39 (0.360) | 193 (1.880) +ACC |
73/92 | 0.0 | 68.9% | intergenic (‑3/+120) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | = 1795552 | 147 (1.340) | coding (1/300 nt) | ihfA | integration host factor subunit alpha | |||||
| * | ? | NC_000913 | = 366364 | 56 (0.510) | 146 (1.390) | 67/94 | 0.0 | 59.3% | intergenic (‑59/+64) | lacZ/lacI | beta‑galactosidase/DNA‑binding transcriptional repressor LacI |
| ? | NC_000913 | 1323131 = | 147 (1.400) | intergenic (‑49/‑89) | trpL/yciV | trp operon leader peptide/RNA/ssDNA 5'‑>3' exonuclease | |||||
| * | ? | NC_000913 | = 380111 | 5 (0.050) | 86 (0.900) +CGAGAT |
47/86 | 0.2 | 62.3% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 114 (1.040) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
| * | ? | NC_000913 | = 389897 | 7 (0.060) | 151 (1.380) | 76/98 | 0.0 | 94.7% | intergenic (‑170/‑354) | hemB/yaiT | porphobilinogen synthase/putative autotransporter YaiT |
| ? | NC_000913 | 399806 = | 10 (0.090) | intergenic (+1/+23) | yaiZ/ddlA | DUF2754 domain‑containing protein YaiZ/D‑alanine‑‑D‑alanine ligase A | |||||
| * | ? | NC_000913 | = 508872 | 10 (0.090) | 151 (1.380) | 76/98 | 0.0 | 93.5% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 11 (0.100) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
| * | ? | NC_000913 | = 565054 | 11 (0.100) | 108 (1.100) | 67/88 | 0.0 | 91.6% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 10 (0.100) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
| * | ? | NC_000913 | = 603466 | 12 (0.110) | 119 (1.130) | 65/94 | 0.0 | 92.4% | coding (1198/1248 nt) | ybdG | miniconductance mechanosensitive channel YbdG |
| ? | NC_000913 | 609352 = | 8 (0.080) | intergenic (+175/+107) | insL‑2/entD | IS186/IS421 transposase/phosphopantetheinyl transferase EntD | |||||
| * | ? | NC_000913 | = 675551 | 13 (0.120) | 128 (1.170) | 63/98 | 0.0 | 90.8% | intergenic (+51/+19) | ybeL/ybeQ | DUF1451 domain‑containing protein YbeL/Sel1 repeat‑containing protein YbeQ |
| ? | NC_000913 | 683371 = | 13 (0.120) | coding (23/1671 nt) | hscC | chaperone protein HscC | |||||
| * | ? | NC_000913 | = 687859 | 9 (0.080) | 143 (1.330) | 67/96 | 0.0 | 92.9% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 13 (0.120) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 729364 | 5 (0.050) | 121 (1.150) | 66/94 | 0.0 | 95.3% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 7 (0.070) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
| * | ? | NC_000913 | = 765207 | 14 (0.130) | 92 (0.860) | 51/96 | 0.3 | 87.7% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 12 (0.110) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
| * | ? | NC_000913 | = 819775 | NA (NA) | 127 (1.160) | 67/98 | 0.0 | 89.4% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 15 (0.140) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
| * | ? | NC_000913 | = 997867 | 6 (0.050) | 134 (1.220) | 66/98 | 0.0 | 94.0% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 11 (0.100) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
| * | ? | NC_000913 | = 1040501 | 9 (0.080) | 113 (1.050) | 59/96 | 0.1 | 93.5% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 7 (0.070) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
| * | ? | NC_000913 | = 1129396 | 8 (0.070) | 98 (0.890) | 66/98 | 0.0 | 90.7% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 12 (0.110) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
| * | ? | NC_000913 | = 1197136 | 9 (0.080) | 97 (1.180) +CAGATAATTCAA |
54/74 | 0.0 | 92.5% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 12 (0.110) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
| * | ? | NC_000913 | = 1388888 | 13 (0.120) | 112 (1.040) | 67/96 | 0.0 | 91.5% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 8 (0.070) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
| * | ? | NC_000913 | = 1400324 | 10 (0.090) | 111 (1.010) | 57/98 | 0.1 | 90.6% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 13 (0.120) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
| * | ? | NC_000913 | = 1509561 | 9 (0.080) | 134 (1.220) | 70/98 | 0.0 | 92.7% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 12 (0.110) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
| * | ? | NC_000913 | = 1627517 | 8 (0.070) | 135 (1.260) | 68/96 | 0.0 | 93.8% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 10 (0.090) | coding (77/111 nt) | ynfP | protein YnfP | |||||
| * | ? | NC_000913 | = 1872029 | 7 (0.060) | 130 (1.210) | 66/96 | 0.0 | 93.6% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 11 (0.100) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
| * | ? | NC_000913 | = 1997111 | 9 (0.080) | 59 (0.540) | 42/98 | 1.1 | 84.9% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 12 (0.110) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
| * | ? | NC_000913 | = 2066304 | NA (NA) | 119 (1.090) | 67/98 | 0.0 | 93.7% | noncoding (1050/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2080592 = | 8 (0.070) | intergenic (‑1/+197) | yeeA/sbmC | putative transporter YeeA/DNA gyrase inhibitor | |||||
| * | ? | NC_000913 | = 2165150 | 13 (0.120) | 147 (1.340) | 65/98 | 0.0 | 91.9% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 13 (0.120) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
| * | ? | NC_000913 | = 2204349 | 10 (0.090) | 107 (0.980) | 61/98 | 0.0 | 90.3% | intergenic (+60/‑247) | yehK/yehL | uncharacterized protein YehK/putative AAA(+) MoxR family ATPase YehL |
| ? | NC_000913 | 2236718 = | 13 (0.120) | intergenic (+218/+25) | preA/mglC | NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit | |||||
| * | ? | NC_000913 | = 2286400 | 9 (0.080) | 139 (1.270) | 75/98 | 0.0 | 93.0% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 12 (0.110) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
| * | ? | NC_000913 | = 2320143 | 8 (0.070) | 132 (1.230) | 74/96 | 0.0 | 93.3% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 11 (0.100) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
| * | ? | NC_000913 | = 2466544 | 14 (0.130) | 157 (1.430) | 75/98 | 0.0 | 91.5% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 15 (0.140) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
| * | ? | NC_000913 | = 2509630 | 9 (0.080) | 117 (1.070) | 62/98 | 0.0 | 92.5% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 10 (0.090) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 2558698 | 11 (0.100) | 100 (1.100) | 62/82 | 0.0 | 91.2% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 10 (0.110) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
| * | ? | NC_000913 | = 2601200 | 13 (0.120) | 146 (1.330) | 67/98 | 0.0 | 94.2% | intergenic (+252/‑1) | bcp/hyfA | thiol peroxidase/hydrogenase 4 component A |
| ? | NC_000913 | 2614796 = | 5 (0.050) | intergenic (+14/+24) | focB/yfgO | putative formate transporter/putative transporter YfgO | |||||
| * | ? | NC_000913 | = 2756159 | 13 (0.120) | 133 (1.240) | 64/96 | 0.0 | 91.2% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 13 (0.120) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
| * | ? | NC_000913 | = 2846300 | 28 (0.260) | 101 (0.980) | 59/92 | 0.0 | 81.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 21 (0.200) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
| * | ? | NC_000913 | = 3090346 | 12 (0.110) | 138 (1.260) | 65/98 | 0.0 | 92.6% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 10 (0.090) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
| * | ? | NC_000913 | = 3110679 | 13 (0.120) | 81 (0.770) +GA |
49/94 | 0.4 | 88.9% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 8 (0.070) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | = 3184781 | 13 (0.120) | 164 (1.530) | 80/96 | 0.0 | 92.2% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 15 (0.140) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
| * | ? | NC_000913 | = 3362161 | 8 (0.070) | 135 (1.230) | 69/98 | 0.0 | 91.5% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 17 (0.160) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
| * | ? | NC_000913 | = 3453927 | 19 (0.170) | 76 (0.740) | 46/92 | 0.5 | 86.5% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 6 (0.060) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
| * | ? | NC_000913 | = 3581138 | 19 (0.170) | 117 (1.220) +CAAATG |
60/86 | 0.0 | 88.1% | coding (1/489 nt) | yhhY | N‑acetyltransferase YhhY |
| ? | NC_000913 | 3585054 = | 17 (0.160) | intergenic (+11/+27) | yrhB/ggt | putative heat shock chaperone/glutathione hydrolase proenzyme | |||||
| * | ? | NC_000913 | = 3618991 | 5 (0.050) | 115 (1.070) | 65/96 | 0.0 | 95.9% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
| * | ? | NC_000913 | = 3651292 | 11 (0.100) | 109 (1.040) | 64/94 | 0.0 | 91.8% | pseudogene (2/746 nt) | yhiS | putative uncharacterized protein YhiS |
| ? | NC_000913 | 3653715 = | 9 (0.090) | intergenic (+2/‑246) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein | |||||
| * | ? | NC_000913 | = 3720633 | 9 (0.080) | 104 (0.950) | 54/98 | 0.2 | 90.4% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 3722076 = | 13 (0.120) | intergenic (+27/+252) | insK/glyS | IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta | |||||
| * | ? | NC_000913 | = 3761992 | 10 (0.090) | 132 (1.230) | 65/96 | 0.0 | 91.7% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 14 (0.130) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
| * | ? | NC_000913 | = 3888431 | 20 (0.180) | 84 (0.780) | 55/96 | 0.1 | 85.0% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 10 (0.090) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
| * | ? | NC_000913 | = 4299627 | 9 (0.080) | 111 (1.010) | 62/98 | 0.0 | 91.4% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 12 (0.110) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
| * | ? | NC_000913 | = 4555490 | 11 (0.100) | 136 (1.270) | 70/96 | 0.0 | 91.3% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 15 (0.140) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||