mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 135,216 | A→G | 5.1% | Q371R (CAG→CGG) | PP_0129 → | GGDEF domain protein |
| RA | 195,424 | G→A | 10.7% | V310V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,505 | C→G | 8.6% | A337A (GCC→GCG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,559 | C→A | 16.9% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 30.1% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,685 | T→C | 8.8% | T397T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,706 | C→T | 6.9% | N404N (AAC→AAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,724 | A→G | 9.6% | V410V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 195,732 | A→C | 18.4% | N413T (AAC→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,766 | G→C | 12.5% | A424A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,769 | T→C | 10.1% | G425G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,826 | C→T | 8.4% | G444G (GGC→GGT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,852 | G→A | 7.1% | S453N (AGC→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,979 | G→A | 7.0% | V495V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,985 | C→T | 8.3% | T497T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,132 | G→C | 7.5% | T546T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,159 | G→A | 6.6% | T555T (ACG→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,195 | G→C | 8.5% | T567T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,234 | T→C | 24.6% | T580T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 10.0% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 14.7% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 9.0% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,405 | G→C | 7.5% | A637A (GCG→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,432 | T→C | 14.9% | T646T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,438 | T→C | 12.1% | S648S (AGT→AGC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,489 | T→C | 15.0% | N665N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,495 | G→C | 20.0% | T667T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,579 | G→A | 29.8% | V695V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,627 | A→C | 20.9% | T711T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,672 | G→A | 20.7% | K726K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,795 | G→C | 14.7% | T767T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,879 | G→A | 39.9% | V795V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,906 | T→C | 12.7% | N804N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,927 | A→C | 11.4% | T811T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,951 | C→G | 7.5% | T819T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,972 | G→A | 12.8% | K826K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 196,990 | T→C | 10.4% | D832D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 6.3% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 16.2% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 7.0% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 5.5% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,224 | A→G | 8.6% | V910V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,395 | G→C | 8.0% | T967T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 18.8% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 24.0% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 18.6% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 19.6% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 17.1% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,550 | T→C | 5.8% | L1686L (TTG→CTG) | PP_0168 → | putative surface adhesion protein |
| RA | 199,744 | T→C | 8.9% | N1750N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 199,957 | C→G | 5.9% | V1821V (GTC→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 200,032 | G→A | 11.7% | V1846V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 200,113 | T→C | 7.9% | N1873N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,116 | T→C | 7.8% | A1874A (GCT→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 200,473 | T→C | 8.2% | G1993G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 201,007 | T→C | 6.5% | G2171G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 203,659 | C→G | 6.3% | T3055T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 203,674 | T→C | 7.3% | D3060D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,155 | T→C | 6.9% | G5887G (GGT→GGC) | PP_0168 → | putative surface adhesion protein |
| RA | 212,794 | C→T | 6.0% | D6100D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 213,601 | G→A | 5.6% | V6369V (GTG→GTA) | PP_0168 → | putative surface adhesion protein |
| RA | 213,619 | T→C | 8.3% | I6375I (ATT→ATC) | PP_0168 → | putative surface adhesion protein |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | Monooxygenase, DszC family/sulfur compound ABC transporter ‑ ATP‑binding subunit |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | 33 kDa chaperonin/conserved protein of unknown function |
| RA | 336,124:1 | +T | 93.3% | coding (209/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 336,125:1 | +T | 6.7% | coding (210/237 nt) | PP_0278 → | conserved protein of unknown function |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | Imidazole glycerol phosphate synthase subunit HisF/choline / betaine / carnitine ABC transporter ‑ ATP binding subunit |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| RA | 699,722 | A→G | 49.4% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| RA | 1,258,757 | G→T | 6.3% | R83S (CGC→AGC) | PP_1102 ← | conserved protein of unknown function |
| RA | 1,327,121 | C→T | 48.6% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | conserved protein of unknown function/conserved protein of unknown function |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,498 | 1 bp→CG | 100% | intergenic (+75/‑89) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | Tryptophan‑‑tRNA ligase/putative enzyme with nucleoside triphosphate hydrolase domain |
| RA | 1,530,173 | A→C | 100% | *399S (TAA→TCA) noncoding (62/244 nt) |
ftsZ → PP_mr19 → |
Cell division protein FtsZ Xoo8 ncRNA |
| RA | 1,617,782 | C→G | 6.6% | intergenic (‑37/+136) | PP_1417 ← / ← PP_1418 | putative Tricarboxylate transport protein TctB/putative Tricarboxylate transport protein TctC |
| JC | 1,780,067 | Δ62 bp | 29.4% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| RA | 1,790,473 | A→G | 8.2% | N135D (AAC→GAC) | dxr → | 1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| RA | 1,831,777 | G→A | 8.9% | R219Q (CGG→CAG) | yfiP → | conserved protein |
| RA | 1,831,780 | T→C | 6.7% | L220P (CTG→CCG) | yfiP → | conserved protein |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | 23S rRNA (746) and tRNA (32) pseudouridine synthase/Cell division topological specificity factor |
| RA | 2,051,065 | T→A | 9.3% | intergenic (‑63/+23) | PP_1825 ← / ← PP_1826 | conserved exported protein of unknown function/Hydrolase, isochorismatase family |
| RA | 2,087,428 | G→A | 11.0% | intergenic (+241/+677) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,635 | T→C | 11.5% | intergenic (+448/+470) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,670 | C→T | 14.8% | intergenic (+483/+435) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,672 | C→G | 14.8% | intergenic (+485/+433) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,676 | G→C | 14.3% | intergenic (+489/+429) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,677 | C→A | 14.2% | intergenic (+490/+428) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,087,690 | G→A | 9.4% | intergenic (+503/+415) | PP_1865 → / ← aroH | transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase |
| RA | 2,550,125 | G→A | 43.7% | noncoding (1436/1522 nt) | PP_16SF → | 16S ribosomal RNA |
| RA | 2,980,087 | T→G | 5.7% | E66D (GAA→GAC) | PP_2605 ← | conserved protein of unknown function |
| RA | 3,021,030 | A→T | 8.4% | Q523L (CAG→CTG) | PP_2638 → | putative Cellulose synthase operon C protein |
| RA | 3,544,639 | A→C | 7.8% | F266V (TTC→GTC) | PP_3130 ← | conserved exported protein of unknown function |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | putative 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/Transcriptional regulator, LysR family |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | putative cytochrome c/conserved exported protein of unknown function |
| RA | 4,022,306 | G→C | 8.8% | intergenic (‑1/+667) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,022,307 | G→C | 8.8% | intergenic (‑2/+666) | PP_3547 ← / ← emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| RA | 4,083,051 | G→C | 5.1% | G17A (GGT→GCT) ‡ | PP_3593 → | Amino acid ABC transporter, periplasmic binding protein |
| RA | 4,083,052 | T→A | 5.2% | G17G (GGT→GGA) ‡ | PP_3593 → | Amino acid ABC transporter, periplasmic binding protein |
| RA | 4,083,053 | G→C | 5.7% | A18P (GCC→CCC) | PP_3593 → | Amino acid ABC transporter, periplasmic binding protein |
| RA | 4,089,886 | Δ1 bp | 6.2% | intergenic (+41/‑64) | kdgD → / → gudP | 5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter |
| RA | 4,089,887 | C→G | 6.3% | intergenic (+42/‑63) | kdgD → / → gudP | 5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter |
| RA | 4,089,890 | C→G | 6.2% | intergenic (+45/‑60) | kdgD → / → gudP | 5‑dehydro‑4‑deoxyglucarate dehydratase/glucarate transporter |
| RA | 4,348,705 | A→G | 49.6% | intergenic (‑70/+404) | PP_3820 ← / ← galU | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,586,030 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,033:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,586,056:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | conserved protein of unknown function/putative Long‑chain‑fatty‑acid‑CoA ligase |
| RA | 4,635,590 | T→C | 48.3% | K56E (AAA→GAA) | uvrY ← | two‑componenent system BarA/UvrY ‑ regulatory subunit |
| RA | 4,740,805 | Δ1 bp | 100% | intergenic (+42/+711) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,816 | T→G | 100% | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,740,819 | 2 bp→CT | 100% | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,228:1 | +C | 19.2% | intergenic (+465/+288) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,229 | A→C | 80.8% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,230 | A→G | 19.2% | intergenic (+467/+286) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,231 | C→G | 80.8% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,232 | C→T | 19.2% | intergenic (+469/+284) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,234 | C→T | 80.8% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,235 | C→T | 19.2% | intergenic (+472/+281) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,236 | G→T | 78.0% | intergenic (+473/+280) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,237 | C→G | 78.1% | intergenic (+474/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,238 | C→G | 21.9% | intergenic (+475/+278) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,239 | A→G | 78.1% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,240 | A→C | 21.9% | intergenic (+477/+276) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,241 | C→T | 21.9% | intergenic (+478/+275) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,243 | G→T | 71.2% | intergenic (+480/+273) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,244 | C→G | 72.5% | intergenic (+481/+272) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,245 | A→C | 72.6% | intergenic (+482/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,254:1 | +T | 15.8% | intergenic (+491/+262) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,255 | C→T | 84.2% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,257 | A→C | 84.2% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,258 | A→G | 15.8% | intergenic (+495/+258) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,260 | C→G | 82.9% | intergenic (+497/+256) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,261 | A→C | 84.2% | intergenic (+498/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,263 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,272 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,274 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,276 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,278 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,283:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,289 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,292 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,294 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,296 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,298 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,808,173 | G→A | 20.7% | intergenic (‑282/‑273) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| JC | 4,808,175 | Δ14 bp | 100% | intergenic (‑284/‑258) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| JC | 4,808,177 | Δ103 bp | 72.7% | intergenic (‑286/‑167) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| JC | 4,808,180 | Δ14 bp | 80.0% | intergenic (‑289/‑253) | PP_4234 ← / → dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| RA | 4,864,410 | T→A | 6.0% | Q488L (CAG→CTG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,411 | G→A | 5.9% | Q488* (CAG→TAG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,415 | G→C | 6.1% | D486E (GAC→GAG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,416 | T→A | 6.1% | D486V (GAC→GTC) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,417 | C→G | 6.1% | D486H (GAC→CAC) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,420 | C→A | 6.2% | G485C (GGC→TGC) | smc ← | Chromosome partition protein Smc |
| RA | 4,864,422 | T→A | 6.0% | Q484L (CAG→CTG) | smc ← | Chromosome partition protein Smc |
| RA | 4,864,424 | T→G | 5.3% | A483A (GCA→GCC) | smc ← | Chromosome partition protein Smc |
| RA | 4,864,427 | C→G | 6.8% | Q482H (CAG→CAC) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,428 | T→A | 6.7% | Q482L (CAG→CTG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,429 | G→C | 6.7% | Q482E (CAG→GAG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,433 | T→C | 6.7% | Q480Q (CAA→CAG) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,864,434 | T→A | 6.4% | Q480L (CAA→CTA) ‡ | smc ← | Chromosome partition protein Smc |
| RA | 4,945,329 | G→T | 7.5% | intergenic (+689/+109) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,945,332 | C→T | 9.4% | intergenic (+692/+106) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,945,333 | A→G | 7.5% | intergenic (+693/+105) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,945,358 | T→C | 17.7% | intergenic (+718/+80) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,945,368 | A→G | 18.4% | intergenic (+728/+70) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,945,370 | C→T | 18.5% | intergenic (+730/+68) | PP_5673 → / ← flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| RA | 4,964,454 | C→T | 100% | D302N (GAC→AAC) | fleQ ← | Transcriptional regulator FleQ |
| JC | 4,980,585 | +GGC | 100% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | conserved exported protein of unknown function/Flagellar hook protein FlgE |
| RA | 5,128,813 | A→G | 7.0% | C98R (TGC→CGC) | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,814 | C→A | 7.0% | L97L (CTG→CTT) | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,817 | T→A | 7.4% | V96V (GTA→GTT) ‡ | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,819 | C→G | 7.0% | V96L (GTA→CTA) ‡ | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,821 | A→T | 6.9% | I95N (ATT→AAT) | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,823 | C→G | 7.0% | K94N (AAG→AAC) ‡ | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,825 | T→A | 7.1% | K94* (AAG→TAG) ‡ | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,828 | T→G | 7.0% | K93Q (AAG→CAG) | PP_4515 ← | Transcriptional regulator, MarR family |
| RA | 5,128,829 | C→T | 7.1% | A92A (GCG→GCA) | PP_4515 ← | Transcriptional regulator, MarR family |
| JC | 5,201,568 | Δ98 bp | 26.9% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | conserved membrane protein of unknown function/putative Peptidase |
| JC | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| RA | 5,674,750:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| RA | 5,674,753 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding protein, acidic stress response factor |
| JC | 5,681,415 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | Channel protein, hemolysin III family/putative Chemotaxis protein |
| RA | 5,822,721 | G→A | 5.5% | G84S (GGC→AGC) ‡ | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,822,723 | C→T | 5.6% | G84G (GGC→GGT) ‡ | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,822,725 | T→G | 5.2% | I85S (ATC→AGC) ‡ | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,822,726 | C→A | 5.6% | I85I (ATC→ATA) ‡ | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,822,728 | A→G | 5.5% | Y86C (TAC→TGC) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,822,730 | T→C | 5.7% | S87P (TCG→CCG) | rdgB → | dITP/XTP pyrophosphatase |
| RA | 5,988,835 | G→C | 23.1% | intergenic (+129/‑417) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,837 | C→G | 23.1% | intergenic (+131/‑415) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,840 | C→T | 23.1% | intergenic (+134/‑412) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,844 | C→G | 25.0% | intergenic (+138/‑408) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,848 | C→T | 24.0% | intergenic (+142/‑404) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,850 | C→T | 24.0% | intergenic (+144/‑402) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,889 | C→A | 20.0% | intergenic (+183/‑363) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,894 | C→T | 20.5% | intergenic (+188/‑358) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,895 | A→G | 20.4% | intergenic (+189/‑357) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,905 | T→C | 23.1% | intergenic (+199/‑347) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 5,988,911 | Δ1 bp | 18.2% | intergenic (+205/‑341) | kefB‑III → / → PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| RA | 6,013,885 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | Xanthine phosphoribosyltransferase/putative acetyl‑CoA hydrolase family protein |
| RA | 6,070,376 | T→A | 6.7% | D90V (GAC→GTC) | PP_5324 ← | Response regulator |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AE015451 | 486230 | 486440–486414 | 185–211 | 24 [22] | [22] 23 | [apaG] | [apaG] |
| * | * | ÷ | AE015451 | 926361 | 926576 | 216 | 23 [22] | [22] 23 | PP_0805 | Outer membrane efflux protein |
| * | * | ÷ | AE015451 | 1367534 | 1367998 | 465 | 23 [22] | [22] 23 | [PP_1193] | [PP_1193] |
| * | * | ÷ | AE015451 | 1691033 | 1691249 | 217 | 23 [21] | [21] 23 | [PP_1487] | [PP_1487] |
| * | * | ÷ | AE015451 | 1841719 | 1841978 | 260 | 23 [22] | [22] 23 | ldhA | D‑lactate dehydrogenase |
| * | * | ÷ | AE015451 | 2027345 | 2027633 | 289 | 23 [22] | [22] 23 | wbpL | Glycosyl transferase WbpL |
| * | * | ÷ | AE015451 | 2038142 | 2038416 | 275 | 23 [22] | [22] 23 | [rffE] | [rffE] |
| * | * | ÷ | AE015451 | 2095118 | 2095374 | 257 | 23 [22] | [21] 23 | [alaA] | [alaA] |
| * | * | ÷ | AE015451 | 2142195 | 2142563 | 369 | 23 [21] | [20] 25 | [PP_1897]–[PP_1898] | [PP_1897],[PP_1898] |
| * | * | ÷ | AE015451 | 2478333 | 2478524 | 192 | 24 [22] | [22] 23 | PP_2172 | conserved exported protein of unknown function |
| * | * | ÷ | AE015451 | 3286972 | 3287306 | 335 | 24 [22] | [22] 23 | [PP_2889]–[xthA] | [PP_2889],[xthA] |
| * | * | ÷ | AE015451 | 3985555 | 3985769 | 215 | 23 [22] | [22] 24 | [PP_3513]–[oplB] | [PP_3513],[oplB] |
| * | * | ÷ | AE015451 | 4705233 | 4705431 | 199 | 24 [22] | [22] 23 | [kdpF] | [kdpF] |
| * | * | ÷ | AE015451 | 4839164 | 4839406 | 243 | 23 [22] | [22] 24 | [ccoP‑I]–[PP_4254] | [ccoP‑I],[PP_4254] |
| * | * | ÷ | AE015451 | 5425392 | 5425657 | 266 | 23 [22] | [22] 23 | [PP_4765] | [PP_4765] |
| * | * | ÷ | AE015451 | 5660391 | 5660706 | 316 | 24 [22] | [21] 23 | ligB | DNA ligase B |
| * | * | ÷ | AE015451 | 5696544 | 5696756 | 213 | 23 [22] | [20] 24 | [pyrC'] | [pyrC'] |
| * | * | ÷ | AE015451 | 5816925 | 5817282 | 358 | 23 [22] | [21] 23 | [pilT] | [pilT] |
| * | * | ÷ | AE015451 | 5835137 | 5835434 | 298 | 23 [22] | [22] 23 | [PP_5113]–[PP_5114] | [PP_5113],[PP_5114] |
| * | * | ÷ | AE015451 | 5858299 | 5858529 | 231 | 24 [21] | [19] 24 | PP_5134 | conserved protein of unknown function |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 11722 = | 71 (1.030) | 7 (0.110) | 7/322 | NT | 10.3% | coding (620/1104 nt) | dnaN | DNA polymerase III subunit beta |
| ? | AE015451 | 11752 = | 54 (0.830) | coding (650/1104 nt) | dnaN | DNA polymerase III subunit beta | |||||
| * | ? | AE015451 | 266168 = | 72 (1.050) | 4 (0.070) | 4/286 | NT | 6.3% | intergenic (+16/‑123) | gabT/PP_0215 | 4‑aminobutyrate aminotransferase/Response regulator |
| ? | AE015451 | 266194 = | 58 (1.000) | intergenic (+42/‑97) | gabT/PP_0215 | 4‑aminobutyrate aminotransferase/Response regulator | |||||
| * | ? | AE015451 | = 336232 | 51 (0.740) | 5 (0.090) | 4/284 | NT | 10.1% | intergenic (+80/+313) | PP_0278/PP_0279 | conserved protein of unknown function/conserved protein of unknown function |
| ? | AE015451 | = 336298 | 46 (0.800) | intergenic (+146/+247) | PP_0278/PP_0279 | conserved protein of unknown function/conserved protein of unknown function | |||||
| * | ? | AE015451 | = 404185 | 52 (0.760) | 5 (0.080) | 5/316 | NT | 9.0% | coding (1872/2691 nt) | PP_0337 | Sensory box protein |
| ? | AE015451 | = 404192 | 52 (0.810) | coding (1865/2691 nt) | PP_0337 | Sensory box protein | |||||
| * | ? | AE015451 | 452136 = | 70 (1.020) | 5 (0.080) | 5/324 | NT | 7.2% | coding (54/1281 nt) | aruC | Acetylornithine aminotransferase 2 |
| ? | AE015451 | 452163 = | 61 (0.930) | coding (81/1281 nt) | aruC | Acetylornithine aminotransferase 2 | |||||
| * | ? | AE015451 | = 499202 | 50 (0.730) | 6 (0.090) +GGGCATGCCC |
6/318 | NT | 11.3% | intergenic (+46/‑250) | uhpA/PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein |
| ? | AE015451 | = 499202 | 50 (0.730) | intergenic (+46/‑250) | uhpA/PP_0411 | DNA‑binding response regulator UhpA/Polyamine ABC transporter, ATP‑binding protein | |||||
| * | ? | AE015451 | 526236 = | NA (NA) | 5 (0.080) | 5/324 | NT | NA | noncoding (1288/1522 nt) | PP_16SC | 16S ribosomal RNA |
| ? | AE015451 | 526258 = | NA (NA) | noncoding (1310/1522 nt) | PP_16SC | 16S ribosomal RNA | |||||
| * | ? | AE015451 | 570396 = | 86 (1.250) | 7 (0.110) | 6/318 | NT | 8.6% | coding (772/1395 nt) | yajR | transporter of an unknown substrate |
| ? | AE015451 | 570494 = | 68 (1.050) | coding (870/1395 nt) | yajR | transporter of an unknown substrate | |||||
| * | ? | AE015451 | 611504 = | NA (NA) | 14 (0.210) | 13/324 | NT | NA | coding (401/966 nt) | PP_0526 | transposase |
| ? | AE015451 | 611533 = | NA (NA) | coding (430/966 nt) | PP_0526 | transposase | |||||
| * | ? | AE015451 | 682075 = | 60 (0.870) | 9 (0.140) | 9/310 | NT | 14.4% | coding (1198/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer |
| ? | AE015451 | 682089 = | 52 (0.830) | coding (1184/1944 nt) | PP_0584 | Methyl‑accepting chemotaxis transducer | |||||
| * | ? | AE015451 | 741491 = | NA (NA) | 11 (0.170) | 8/324 | NT | NA | intergenic (+91/‑409) | PP_t12/PP_0635 | tRNA‑Thr/Group II intron‑encoding maturase |
| ? | AE015451 | 741509 = | NA (NA) | intergenic (+109/‑391) | PP_t12/PP_0635 | tRNA‑Thr/Group II intron‑encoding maturase | |||||
| * | ? | AE015451 | 764214 = | 61 (0.890) | 9 (0.140) | 8/322 | NT | 13.9% | coding (307/822 nt) | PP_0656 | putative Amino acid ABC transporter, permease protein |
| ? | AE015451 | 764244 = | 53 (0.810) | coding (277/822 nt) | PP_0656 | putative Amino acid ABC transporter, permease protein | |||||
| * | ? | AE015451 | 779909 = | 85 (1.240) | 5 (0.080) | 4/322 | NT | 5.8% | coding (562/954 nt) | PP_0670 | Transporter, bile acid/Na+ symporter family |
| ? | AE015451 | 779928 = | 80 (1.220) | coding (543/954 nt) | PP_0670 | Transporter, bile acid/Na+ symporter family | |||||
| * | ? | AE015451 | = 1161821 | 64 (0.930) | 4 (0.060) | 4/328 | NT | 6.2% | coding (784/1155 nt) | gtsD | mannose/glucose ABC transporter ‑ ATP binding subunit |
| ? | AE015451 | = 1161918 | 58 (0.870) | coding (881/1155 nt) | gtsD | mannose/glucose ABC transporter ‑ ATP binding subunit | |||||
| * | ? | AE015451 | 1203170 = | 55 (0.800) | 6 (0.090) | 6/322 | NT | 10.5% | coding (999/1089 nt) | xcpY | Type II secretion pathway protein XcpY |
| ? | AE015451 | 1203194 = | 50 (0.760) | coding (1023/1089 nt) | xcpY | Type II secretion pathway protein XcpY | |||||
| * | ? | AE015451 | 1260043 = | 56 (0.820) | 4 (0.060) | 4/320 | NT | 7.0% | coding (1408/2451 nt) | PP_1103 | ATP‑dependent helicase, DEAD box family |
| ? | AE015451 | 1260090 = | 53 (0.820) | coding (1361/2451 nt) | PP_1103 | ATP‑dependent helicase, DEAD box family | |||||
| * | ? | AE015451 | = 1296790 | NA (NA) | 6 (0.090) | 6/324 | NT | NA | intergenic (‑543/‑23) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA 1/transposase |
| ? | AE015451 | = 1296814 | NA (NA) | coding (2/1329 nt) | PP_1133 | transposase | |||||
| * | ? | AE015451 | 1347037 = | 81 (1.180) | 3 (0.050) | 3/292 | NT | 5.0% | intergenic (‑145/+259) | udh/galP‑I | uronate dehydrogenase/porin‑like protein |
| ? | AE015451 | 1347141 = | 44 (0.740) | intergenic (‑249/+155) | udh/galP‑I | uronate dehydrogenase/porin‑like protein | |||||
| * | ? | AE015451 | 1360758 = | 78 (1.140) | 5 (0.080) | 5/324 | NT | 6.1% | intergenic (+18/‑179) | oprH/phoP | Outer membrane protein H1/two component system DNA‑binding transcriptional dual regulator |
| ? | AE015451 | 1360915 = | 78 (1.190) | intergenic (+175/‑22) | oprH/phoP | Outer membrane protein H1/two component system DNA‑binding transcriptional dual regulator | |||||
| * | ? | AE015451 | = 1411412 | 56 (0.820) | 4 (0.060) | 4/320 | NT | 7.0% | coding (523/1437 nt) | PP_1232 | conserved exported protein of unknown function |
| ? | AE015451 | = 1411433 | 53 (0.820) | coding (502/1437 nt) | PP_1232 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 1424647 = | 63 (0.920) | 5 (0.080) | 5/322 | NT | 8.3% | coding (720/768 nt) | PP_1248 | Transporter, LysE family |
| ? | AE015451 | 1424687 = | 51 (0.780) | coding (680/768 nt) | PP_1248 | Transporter, LysE family | |||||
| * | ? | AE015451 | 1520979 = | 42 (0.610) | 5 (0.080) | 4/328 | NT | 11.5% | coding (236/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase |
| ? | AE015451 | 1521003 = | 36 (0.540) | coding (260/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase | |||||
| * | ? | AE015451 | = 1535168 | 71 (1.030) | 6 (0.090) | 6/320 | NT | 8.6% | coding (177/1218 nt) | argJ | Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase |
| ? | AE015451 | = 1535239 | 61 (0.940) | coding (248/1218 nt) | argJ | Glutamate N‑acetyltransferase/Amino‑acid acetyltransferase | |||||
| * | ? | AE015451 | 1737987 = | 100 (1.460) | 18 (0.290) | 17/304 | NT | 16.8% | coding (32/348 nt) | yffB | putative glutathione‑dependent thiol reductase |
| ? | AE015451 | = 1777401 | 88 (1.430) | intergenic (+135/+157) | PP_5476/PP_1585 | conserved protein of unknown function/putative Antidote protein | |||||
| * | ? | AE015451 | 2066272 = | 63 (0.920) | 5 (0.090) | 5/286 | NT | 8.7% | intergenic (+11/+30) | PP_1842/PP_1843 | Glutamine amidotransferase, class I/Mg2+/Co2+ transporter |
| ? | AE015451 | 2066298 = | 52 (0.900) | intergenic (+37/+4) | PP_1842/PP_1843 | Glutamine amidotransferase, class I/Mg2+/Co2+ transporter | |||||
| * | ? | AE015451 | 2147295 = | 44 (0.640) | 4 (0.060) | 4/320 | NT | 8.7% | coding (3225/3276 nt) | rne | ribonuclease E |
| ? | AE015451 | 2147314 = | 42 (0.650) | coding (3206/3276 nt) | rne | ribonuclease E | |||||
| * | ? | AE015451 | 2242090 = | 60 (0.870) | 3 (0.050) | 3/322 | NT | 5.1% | noncoding (27/76 nt) | PP_t29 | tRNA‑Ala |
| ? | AE015451 | 2242107 = | 54 (0.830) | noncoding (44/76 nt) | PP_t29 | tRNA‑Ala | |||||
| * | ? | AE015451 | = 2270395 | 57 (0.830) | 4 (0.060) | 3/324 | NT | 6.6% | coding (1198/1212 nt) | metZ | O‑succinylhomoserine sulfhydrylase |
| ? | AE015451 | = 2270468 | 58 (0.880) | coding (63/774 nt) | PP_2002 | putative enzyme | |||||
| * | ? | AE015451 | 2310292 = | 56 (0.820) | 5 (0.080) | 5/318 | NT | 9.0% | coding (43/1311 nt) | PP_2033 | conserved protein of unknown function |
| ? | AE015451 | 2310373 = | 48 (0.740) | coding (124/1311 nt) | PP_2033 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 2414783 | 51 (0.740) | 6 (0.090) | 6/322 | NT | 11.0% | intergenic (+325/‑20) | PP_2114/PP_2115 | transposase/conserved protein of unknown function |
| ? | AE015451 | = 2530723 | NA (NA) | intergenic (+142/‑39) | PP_2218/PP_2219 | transposase/conserved protein of unknown function | |||||
| * | ? | AE015451 | 2460050 = | 73 (1.060) | 5 (0.080) | 5/324 | NT | 6.7% | coding (243/717 nt) | ugpQ | glycerophosphoryl diester phosphodiesterase |
| ? | AE015451 | 2460124 = | 70 (1.060) | coding (169/717 nt) | ugpQ | glycerophosphoryl diester phosphodiesterase | |||||
| * | ? | AE015451 | = 2472115 | 54 (0.790) | 17 (0.260) | 16/324 | NT | 26.8% | intergenic (+19/+130) | PP_2166/PP_2167 | Anti‑anti‑sigma factor/putative PhoD‑like phosphatase |
| ? | AE015451 | 2472313 = | 41 (0.620) | coding (1783/1851 nt) | PP_2167 | putative PhoD‑like phosphatase | |||||
| * | ? | AE015451 | = 2644844 | 51 (0.740) | 3 (0.050) | 3/316 | NT | 6.0% | coding (2470/2499 nt) | PP_2316 | putative ABC transporter, permease protein |
| ? | AE015451 | = 2645004 | 47 (0.730) | coding (2310/2499 nt) | PP_2316 | putative ABC transporter, permease protein | |||||
| * | ? | AE015451 | 2909022 = | 87 (1.270) | 7 (0.110) | 6/320 | NT | 8.1% | coding (1416/1737 nt) | aprDA | alkaline protease secretion transporter ATP‑binding protein |
| ? | AE015451 | 2909058 = | 77 (1.190) | coding (1380/1737 nt) | aprDA | alkaline protease secretion transporter ATP‑binding protein | |||||
| * | ? | AE015451 | 2941321 = | 65 (0.950) | 6 (0.090) | 6/326 | NT | 8.8% | coding (553/912 nt) | PP_2574 | Transcriptional regulator, LysR family |
| ? | AE015451 | 2941342 = | 61 (0.920) | coding (574/912 nt) | PP_2574 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | = 2941322 | 64 (0.930) | 4 (0.060) | 4/318 | NT | 6.8% | coding (554/912 nt) | PP_2574 | Transcriptional regulator, LysR family |
| ? | AE015451 | = 2941411 | 50 (0.770) | coding (643/912 nt) | PP_2574 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | 3070742 = | 75 (1.090) | 5 (0.080) | 4/324 | NT | 6.9% | intergenic (+310/‑44) | aldB‑II/pqqD‑II | aldehyde dehydrogenase/coenzyme PQQ synthesis protein D |
| ? | AE015451 | 3070765 = | 63 (0.960) | intergenic (+333/‑21) | aldB‑II/pqqD‑II | aldehyde dehydrogenase/coenzyme PQQ synthesis protein D | |||||
| * | ? | AE015451 | = 3174130 | 70 (1.020) | 5 (0.080) | 5/322 | NT | 7.1% | coding (301/837 nt) | PP_2786 | conserved exported protein of unknown function |
| ? | AE015451 | = 3174131 | 65 (0.990) | coding (302/837 nt) | PP_2786 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | 3287449 = | 44 (0.640) | 3 (0.050) | 3/306 | NT | 7.0% | coding (664/813 nt) | xthA | exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI |
| ? | AE015451 | 3287465 = | 40 (0.640) | coding (648/813 nt) | xthA | exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI | |||||
| * | ? | AE015451 | = 3335917 | 72 (1.050) | 6 (0.090) | 6/322 | NT | 8.1% | coding (679/843 nt) | yghU | GSH‑dependent disulfide bond oxidoreductase |
| ? | AE015451 | = 3335929 | 68 (1.040) | coding (667/843 nt) | yghU | GSH‑dependent disulfide bond oxidoreductase | |||||
| * | ? | AE015451 | 3409687 = | 47 (0.680) | 4 (0.060) | 4/310 | NT | 8.5% | intergenic (‑253/‑283) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
| ? | AE015451 | 3409701 = | 43 (0.680) | intergenic (‑267/‑269) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function | |||||
| * | ? | AE015451 | 3409928 = | 63 (0.920) | 5 (0.080) | 4/328 | NT | 6.0% | intergenic (‑494/‑42) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
| ? | AE015451 | = 3450711 | 95 (1.430) | intergenic (‑125/+258) | PP_5558/PP_3069 | putative transcriptional xre family of phage origin/Outer membrane autotransporter | |||||
| * | ? | AE015451 | 3662642 = | 66 (0.960) | 4 (0.060) | 4/328 | NT | 6.1% | coding (192/1143 nt) | PP_3226 | Acyl‑CoA dehydrogenase‑related protein |
| ? | AE015451 | 3662663 = | 59 (0.890) | coding (171/1143 nt) | PP_3226 | Acyl‑CoA dehydrogenase‑related protein | |||||
| * | ? | AE015451 | 3685837 = | 58 (0.840) | 4 (0.060) | 4/324 | NT | 6.5% | coding (245/1332 nt) | PP_3251 | conserved protein of unknown function |
| ? | AE015451 | 3685864 = | 60 (0.910) | coding (272/1332 nt) | PP_3251 | conserved protein of unknown function | |||||
| * | ? | AE015451 | = 3704021 | 62 (0.900) | 4 (0.060) | 3/320 | NT | 7.7% | coding (1981/2055 nt) | paaZ | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| ? | AE015451 | = 3704222 | 37 (0.570) | coding (1780/2055 nt) | paaZ | oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase | |||||
| * | ? | AE015451 | 3718735 = | 64 (0.930) | 7 (0.110) | 6/320 | NT | 10.8% | coding (666/774 nt) | paaF | enoyl‑CoA hydratase‑isomerase |
| ? | AE015451 | 3718802 = | 55 (0.850) | coding (599/774 nt) | paaF | enoyl‑CoA hydratase‑isomerase | |||||
| * | ? | AE015451 | = 3862642 | 69 (1.010) | 4 (0.060) | 4/318 | NT | 5.3% | coding (1565/3282 nt) | PP_3413 | Sensor histidine kinase/response regulator |
| ? | AE015451 | = 3862691 | 77 (1.190) | coding (1614/3282 nt) | PP_3413 | Sensor histidine kinase/response regulator | |||||
| * | ? | AE015451 | 3894290 = | 62 (0.900) | 5 (0.070) | 5/332 | NT | 7.8% | coding (769/1572 nt) | yegH | putative transporter |
| ? | AE015451 | 3894356 = | 58 (0.860) | coding (703/1572 nt) | yegH | putative transporter | |||||
| * | ? | AE015451 | = 3908050 | 47 (0.680) | 5 (0.080) | 4/318 | NT | 10.2% | coding (364/432 nt) | PP_3449 | conserved exported protein of unknown function |
| ? | AE015451 | = 3908060 | 44 (0.680) | coding (374/432 nt) coding (9/2640 nt) |
PP_3449 PP_3450 |
conserved exported protein of unknown function conserved protein of unknown function containing TPR repeat |
|||||
| * | ? | AE015451 | = 3914323 | 71 (1.030) | 5 (0.080) | 3/324 | NT | 7.2% | coding (464/702 nt) | PP_3454 | putative transcriptional regulatory protein |
| ? | AE015451 | = 3914401 | 61 (0.930) | coding (386/702 nt) | PP_3454 | putative transcriptional regulatory protein | |||||
| * | ? | AE015451 | = 3920892 | 46 (0.670) | 3 (0.050) | 3/318 | NT | 5.9% | coding (874/1689 nt) | acs | Butyrate‑‑CoA ligase |
| ? | AE015451 | = 3920902 | 53 (0.820) | coding (864/1689 nt) | acs | Butyrate‑‑CoA ligase | |||||
| * | ? | AE015451 | 3970595 = | NA (NA) | 7 (0.110) | 7/306 | NT | NA | coding (514/1536 nt) | PP_3501 | transposase |
| ? | AE015451 | 3970611 = | NA (NA) | coding (530/1536 nt) | PP_3501 | transposase | |||||
| * | ? | AE015451 | 3972968 = | 14 (0.200) | 4 (0.060) | 4/324 | NT | 20.3% | intergenic (+6/+179) | PP_3502/PP_3503 | transposase/Sigma‑54 dependent transcriptional regulator |
| ? | AE015451 | 5220089 = | 18 (0.270) | intergenic (+23/+126) | PP_4599/moaB‑II | transposase/molybdenum cofactor biosynthesis protein B | |||||
| * | ? | AE015451 | = 3991477 | 41 (0.600) | 10 (0.150) | 8/318 | NT | 21.6% | coding (150/894 nt) | PP_3517 | conserved exported protein of unknown function |
| ? | AE015451 | = 3991496 | 34 (0.530) | coding (131/894 nt) | PP_3517 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 4022317 | 46 (0.670) | 12 (0.190) | 11/318 | NT | 24.7% | intergenic (‑12/+656) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit |
| ? | AE015451 | 4022818 = | 30 (0.460) | intergenic (‑513/+155) | PP_3547/emrB | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit | |||||
| * | ? | AE015451 | = 4059731 | 54 (0.790) | 3 (0.050) | 3/320 | NT | 5.6% | coding (1168/1638 nt) | pgm | phosphoglucomutase |
| ? | AE015451 | = 4059764 | 51 (0.790) | coding (1135/1638 nt) | pgm | phosphoglucomutase | |||||
| * | ? | AE015451 | = 4189269 | 75 (1.090) | 4 (0.060) | 4/322 | NT | 5.1% | coding (532/819 nt) | PP_5611 | putative transcriptional regulator |
| ? | AE015451 | = 4189277 | 76 (1.160) | coding (540/819 nt) | PP_5611 | putative transcriptional regulator | |||||
| * | ? | AE015451 | 4192459 = | 73 (1.060) | 6 (0.100) | 5/298 | NT | 8.1% | intergenic (+65/‑584) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | 4192479 = | 71 (1.170) | intergenic (+85/‑564) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | = 4192478 | 73 (1.060) | 4 (0.070) | 4/298 | NT | 5.6% | intergenic (+84/‑565) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function |
| ? | AE015451 | = 4192458 | 71 (1.170) | intergenic (+64/‑585) | PP_5613/PP_5614 | protein of unknown function/protein of unknown function | |||||
| * | ? | AE015451 | = 4261401 | 46 (0.670) | 6 (0.090) | 6/314 | NT | 12.0% | coding (1361/2460 nt) | PP_3734 | putative ABC transporter, permease protein |
| ? | AE015451 | = 4261493 | 45 (0.710) | coding (1269/2460 nt) | PP_3734 | putative ABC transporter, permease protein | |||||
| * | ? | AE015451 | 4418726 = | 80 (1.170) | 6 (0.090) | 5/314 | NT | 7.7% | coding (242/351 nt) | PP_3908 | conserved protein of unknown function |
| ? | AE015451 | 4418770 = | 70 (1.100) | coding (286/351 nt) | PP_3908 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 4642610 = | 63 (0.920) | 5 (0.080) | 5/326 | NT | 7.7% | coding (553/897 nt) | PP_4107 | Transcriptional regulator, LysR family |
| ? | AE015451 | 4642634 = | 59 (0.890) | coding (577/897 nt) | PP_4107 | Transcriptional regulator, LysR family | |||||
| * | ? | AE015451 | 4743577 = | 66 (0.960) | 12 (0.180) | 10/322 | NT | 13.5% | coding (415/1593 nt) | PP_4197 | Transcriptional regulator, GntR family |
| ? | AE015451 | 4743666 = | 91 (1.390) | coding (326/1593 nt) | PP_4197 | Transcriptional regulator, GntR family | |||||
| * | ? | AE015451 | 4808173 = | 0 (0.000) | 12 (0.180) | 5/334 | NT | 30.0% | intergenic (‑282/‑273) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 4945372 | 56 (0.830) | intergenic (+732/+66) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4808179 | 0 (0.000) | 16 (0.250) | 10/314 | NT | 47.1% | intergenic (‑288/‑267) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 5988765 = | 36 (0.560) | intergenic (+59/‑487) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4832748 | 60 (0.870) | 5 (0.080) | 4/326 | NT | 7.8% | coding (443/1014 nt) | pvdY | hydroxyproline acetylase |
| ? | AE015451 | = 4832762 | 61 (0.920) | coding (429/1014 nt) | pvdY | hydroxyproline acetylase | |||||
| * | ? | AE015451 | = 4865140 | 47 (0.680) | 4 (0.060) | 4/320 | NT | 8.5% | coding (733/3489 nt) | smc | Chromosome partition protein Smc |
| ? | AE015451 | = 4865159 | 42 (0.650) | coding (714/3489 nt) | smc | Chromosome partition protein Smc | |||||
| * | ? | AE015451 | = 4945203 | 48 (0.700) | 9 (0.140) | 9/320 | NT | 14.2% | intergenic (+563/+235) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945621 = | 63 (0.970) | coding (960/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 4945209 | 47 (0.680) | 9 (0.140) | 8/320 | NT | 15.3% | intergenic (+569/+229) | PP_5673/flhB | putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein |
| ? | AE015451 | 4945455 = | 55 (0.850) | coding (1126/1143 nt) | flhB | flagellin export apparatus, substrate specificity protein | |||||
| * | ? | AE015451 | = 5170114 | 65 (0.950) | 4 (0.060) | 4/320 | NT | 5.0% | coding (343/1308 nt) | PP_4548 | putative Oxidoreductase |
| ? | AE015451 | = 5170444 | 90 (1.390) | coding (673/1308 nt) | PP_4548 | putative Oxidoreductase | |||||
| * | ? | AE015451 | 5252000 = | 53 (0.770) | 3 (0.050) | 3/320 | NT | 5.7% | coding (843/882 nt) | cidR | transcriptional regulator, LysR family |
| ? | AE015451 | 5252049 = | 49 (0.750) | intergenic (+10/+12) | cidR/PP_4628 | transcriptional regulator, LysR family/conserved protein of unknown function | |||||
| * | ? | AE015451 | = 5279872 | 55 (0.800) | 4 (0.060) | 4/320 | NT | 6.2% | coding (91/1086 nt) | trmA | tRNA/tmRNA (uracil‑C(5))‑methyltransferase |
| ? | AE015451 | = 5279915 | 69 (1.060) | coding (134/1086 nt) | trmA | tRNA/tmRNA (uracil‑C(5))‑methyltransferase | |||||
| * | ? | AE015451 | = 5325153 | 66 (0.960) | 5 (0.080) | 5/310 | NT | 7.7% | coding (66/279 nt) | PP_4685 | conserved protein of unknown function |
| ? | AE015451 | = 5325139 | 59 (0.940) | coding (52/279 nt) | PP_4685 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 5441955 = | 61 (0.890) | 3 (0.050) | 3/322 | NT | 5.3% | coding (629/1653 nt) | PP_4780 | putative Acyl‑CoA dehydrogenase |
| ? | AE015451 | 5441989 = | 49 (0.750) | coding (595/1653 nt) | PP_4780 | putative Acyl‑CoA dehydrogenase | |||||
| * | ? | AE015451 | = 5509910 | 63 (0.920) | 5 (0.080) | 4/298 | NT | 8.0% | coding (109/1488 nt) | urtB | putative Urea ABC transporter |
| ? | AE015451 | = 5509890 | 59 (0.980) | coding (89/1488 nt) | urtB | putative Urea ABC transporter | |||||
| * | ? | AE015451 | = 5559582 | 86 (1.250) | 4 (0.070) | 4/298 | NT | 5.1% | coding (915/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit |
| ? | AE015451 | = 5559562 | 74 (1.220) | coding (935/1188 nt) | hisZ | ATP phosphoribosyltransferase regulatory subunit | |||||
| * | ? | AE015451 | 5708595 = | 78 (1.140) | 4 (0.060) | 3/320 | NT | 5.3% | coding (2613/4761 nt) | PP_5009 | conserved protein of unknown function |
| ? | AE015451 | 5708630 = | 70 (1.080) | coding (2648/4761 nt) | PP_5009 | conserved protein of unknown function | |||||
| * | ? | AE015451 | 5822892 = | 69 (1.010) | 4 (0.060) | 4/314 | NT | 6.2% | coding (421/597 nt) | rdgB | dITP/XTP pyrophosphatase |
| ? | AE015451 | 5823034 = | 57 (0.890) | coding (563/597 nt) | rdgB | dITP/XTP pyrophosphatase | |||||
| * | ? | AE015451 | 5910238 = | 77 (1.120) | 5 (0.080) | 4/320 | NT | 6.5% | coding (513/1362 nt) | spuC‑II | polyamine:pyruvate transaminase |
| ? | AE015451 | 5910270 = | 72 (1.110) | coding (481/1362 nt) | spuC‑II | polyamine:pyruvate transaminase | |||||
| * | ? | AE015451 | = 5988668 | 41 (0.600) | 5 (0.080) | 5/324 | NT | 12.9% | coding (1750/1788 nt) | kefB‑III | glutathione‑regulated potassium/H+ antiporter |
| ? | AE015451 | 5988956 = | 28 (0.430) | intergenic (+250/‑296) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988757 | 36 (0.520) | 17 (0.260) | 15/322 | NT | 36.1% | intergenic (+51/‑495) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988979 = | 26 (0.400) | intergenic (+273/‑273) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 5988771 | 39 (0.570) | 9 (0.140) | 9/322 | NT | 21.4% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | AE015451 | 5988963 = | 29 (0.440) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||