breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	287	Δ1 bp	6.8%	intergenic (+32/‑50)	thrL → / → thrA	thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1
RA	291	A→T	6.6%	intergenic (+36/‑46)	thrL → / → thrA	thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1
RA	293:1	+G	6.8%	intergenic (+38/‑44)	thrL → / → thrA	thr operon leader peptide/fused aspartate kinase/homoserine dehydrogenase 1
RA	9,907	A→C	11.0%	intergenic (+14/+21)	mog → / ← satP	molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter
RA	9,908	G→T	10.4%	intergenic (+15/+20)	mog → / ← satP	molybdopterin adenylyltransferase/acetate/succinate:H(+) symporter
RA	10,620	A→T	5.5%	intergenic (‑126/+23)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	10,621	A→T	5.5%	intergenic (‑127/+22)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	10,622	A→C	5.5%	intergenic (‑128/+21)	satP ← / ← yaaW	acetate/succinate:H(+) symporter/putative enzyme‑specific chaperone YaaW
RA	11,127	C→G	10.5%	S77T (AGT→ACT)  L100V (CTA→GTA)	yaaW ← mbiA →	putative enzyme‑specific chaperone YaaW uncharacterized protein MbiA
RA	35,462	T→C	6.1%	Y234C (TAT→TGT)	caiD ←	crotonobetainyl‑CoA hydratase
RA	51,907	T→G	10.1%	E175A (GAA→GCA) ‡	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	51,908	C→G	10.0%	E175Q (GAA→CAA) ‡	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	51,909	C→A	10.0%	L174L (CTG→CTT)	rsmA ←	16S rRNA m(6)2A1518,m(6)2A1519 dimethyltransferase
RA	59,625	G→A	6.4%	intergenic (+346/+62)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,626	A→G	6.4%	intergenic (+347/+61)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	59,628	T→C	6.3%	intergenic (+349/+59)	yabQ → / ← rluA	protein YabQ/23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase
RA	79,860	G→T	7.5%	T335T (ACC→ACA)	leuC ←	3‑isopropylmalate dehydratase subunit LeuC
RA	89,804	G→A	7.3%	E57E (GAG→GAA)	mraZ →	DNA‑binding transcriptional repressor MraZ
RA	103,574	G→T	6.7%	A140A (GCG→GCT)	ftsQ →	cell division protein FtsQ
RA	103,580	A→T	6.5%	G142G (GGA→GGT)	ftsQ →	cell division protein FtsQ
RA	103,582	A→T	6.4%	N143I (AAT→ATT)	ftsQ →	cell division protein FtsQ
RA	103,584	A→T	6.6%	T144S (ACC→TCC)	ftsQ →	cell division protein FtsQ
RA	114,506	G→T	11.4%	intergenic (+19/+16)	guaC → / ← hofC	GMP reductase/inner membrane protein HofC
RA	114,507	A→T	11.4%	intergenic (+20/+15)	guaC → / ← hofC	GMP reductase/inner membrane protein HofC
RA	114,510	A→T	12.0%	intergenic (+23/+12)	guaC → / ← hofC	GMP reductase/inner membrane protein HofC
RA	114,511	A→C	12.7%	intergenic (+24/+11)	guaC → / ← hofC	GMP reductase/inner membrane protein HofC
RA	120,154	Δ1 bp	8.0%	intergenic (+19/+24)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	120,158:1	+A	8.3%	intergenic (+23/+20)	ampE → / ← aroP	protein AmpE/aromatic amino acid:H(+) symporter AroP
RA	124,856	G→T	6.5%	A614S (GCG→TCG)	aceE →	pyruvate dehydrogenase E1 component
RA	124,859	G→C	5.7%	A615P (GCT→CCT) ‡	aceE →	pyruvate dehydrogenase E1 component
RA	124,861	T→A	5.6%	A615A (GCT→GCA) ‡	aceE →	pyruvate dehydrogenase E1 component
RA	124,863	G→C	5.6%	G616A (GGC→GCC)	aceE →	pyruvate dehydrogenase E1 component
RA	124,866	A→C	5.7%	D617A (GAC→GCC)	aceE →	pyruvate dehydrogenase E1 component
RA	125,085	Δ1 bp	100%	coding (2069/2664 nt)	aceE →	pyruvate dehydrogenase E1 component
RA	127,603	C→G	6.8%	intergenic (+16/‑309)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,604	A→T	7.6%	intergenic (+17/‑308)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,605	A→T	7.8%	intergenic (+18/‑307)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	127,606	C→G	8.7%	intergenic (+19/‑306)	aceF → / → lpd	pyruvate dehydrogenase, E2 subunit/lipoamide dehydrogenase
RA	143,533	T→C	9.3%	L252P (CTG→CCG) ‡	yadG →	putative ABC transporter ATP‑binding protein YadG
RA	143,534	G→A	9.2%	L252L (CTG→CTA) ‡	yadG →	putative ABC transporter ATP‑binding protein YadG
RA	146,733	G→A	7.6%	intergenic (‑39/‑235)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,734	A→T	7.5%	intergenic (‑40/‑234)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	146,735	T→C	7.6%	intergenic (‑41/‑233)	panD ← / → rpnC	aspartate 1‑decarboxylase proenzyme/recombination‑promoting nuclease RpnC
RA	167,917	A→C	5.3%	Q145P (CAG→CCG) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,918	G→C	5.5%	Q145H (CAG→CAC) ‡	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	167,919	G→T	5.5%	G146C (GGC→TGC)	fhuA →	ferrichrome outer membrane transporter/phage receptor
RA	169,748	T→A	5.6%	intergenic (+21/‑30)	fhuA → / → fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit
RA	169,749	T→A	5.6%	intergenic (+22/‑29)	fhuA → / → fhuC	ferrichrome outer membrane transporter/phage receptor/iron(III) hydroxamate ABC transporter ATP binding subunit
RA	176,977	A→G	7.3%	intergenic (+23/+24)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,978	A→T	7.1%	intergenic (+24/+23)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	176,979	C→T	7.1%	intergenic (+25/+22)	erpA → / ← yadS	iron‑sulfur cluster insertion protein ErpA/conserved inner membrane protein YadS
RA	182,659	C→T	7.1%	A66V (GCG→GTG)	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,661	G→C	7.1%	V67L (GTA→CTA)	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,664	G→C	7.1%	A68P (GCA→CCA) ‡	cdaR →	DNA‑binding transcriptional activator CdaR
RA	182,666	A→G	7.2%	A68A (GCA→GCG) ‡	cdaR →	DNA‑binding transcriptional activator CdaR
RA	187,676	T→A	6.0%	E325D (GAA→GAT)	glnD ←	PII uridylyltransferase/uridylyl removing enzyme
RA	188,696	A→G	7.8%	intergenic (‑46/+16)	glnD ← / ← map	PII uridylyltransferase/uridylyl removing enzyme/methionine aminopeptidase
RA	191,720	G→A	7.2%	intergenic (+12/‑135)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	191,728	T→C	7.2%	intergenic (+20/‑127)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	191,729	G→T	7.3%	intergenic (+21/‑126)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	191,730	A→C	7.2%	intergenic (+22/‑125)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	191,731	G→A	7.0%	intergenic (+23/‑124)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	191,739	T→C	8.0%	intergenic (+31/‑116)	tsf → / → pyrH	protein chain elongation factor EF‑Ts/UMP kinase
RA	193,846	C→T	6.4%	P109L (CCT→CTT)	dxr →	1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase
RA	201,847	C→G	9.8%	R293G (CGT→GGT) ‡	lpxD →	UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase
RA	201,849	T→A	9.7%	R293R (CGT→CGA) ‡	lpxD →	UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase
RA	201,851	C→G	11.7%	P294R (CCC→CGC)	lpxD →	UDP‑3‑O‑(3‑hydroxymyristoyl)glucosamine N‑acyltransferase
RA	204,513	G→A	6.6%	P7P (CCG→CCA)	rnhB →	RNase HII
RA	204,517	A→C	6.8%	T9P (ACG→CCG)	rnhB →	RNase HII
RA	204,522	G→A	6.3%	Q10Q (CAG→CAA)	rnhB →	RNase HII
RA	204,524	T→C	6.4%	L11P (CTG→CCG) ‡	rnhB →	RNase HII
RA	204,525	G→A	6.4%	L11L (CTG→CTA) ‡	rnhB →	RNase HII
RA	204,527	T→C	6.3%	V12A (GTT→GCT)	rnhB →	RNase HII
RA	204,532	G→T	6.3%	G14C (GGT→TGT)	rnhB →	RNase HII
RA	204,536	T→C	6.1%	V15A (GTG→GCG)	rnhB →	RNase HII
RA	209,604	T→C	8.0%	intergenic (+24/‑75)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,608	T→C	7.9%	intergenic (+28/‑71)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,609	T→G	8.0%	intergenic (+29/‑70)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,610	C→A	8.4%	intergenic (+30/‑69)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,611	G→A	7.9%	intergenic (+31/‑68)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	209,615	G→A	7.9%	intergenic (+35/‑64)	accA → / → ldcC	acetyl‑CoA carboxyltransferase subunit alpha/lysine decarboxylase 2
RA	225,935	G→T	15.4%	noncoding (177/2904 nt)	rrlH →	23S ribosomal RNA
RA	231,007	C→A	8.8%	intergenic (‑126/‑115)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	231,008	T→G	8.7%	intergenic (‑127/‑114)	yafC ← / → yafD	putative LysR family transcriptional regulator YafC/endonuclease/exonuclease/phosphatase domain‑containing protein YafD
RA	237,900	A→T	6.0%	D189V (GAC→GTC)	yafT →	lipoprotein YafT
RA	247,469	A→G	9.4%	intergenic (+8/‑168)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	247,470	A→C	9.4%	intergenic (+9/‑167)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	247,476	T→A	9.1%	intergenic (+15/‑161)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	247,477	T→A	9.1%	intergenic (+16/‑160)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	247,483	G→T	9.4%	intergenic (+22/‑154)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	247,484	C→T	9.2%	intergenic (+23/‑153)	yafL → / → rayT	NlpC/P60 family protein YafL/REP‑associated tyrosine transposase
RA	248,767	C→G	5.1%	pseudogene (1304/1713 nt)	lfhA ←	flagellar system protein, promoterless fragment
RA	248,769	G→C	5.1%	pseudogene (1302/1713 nt)	lfhA ←	flagellar system protein, promoterless fragment
RA	248,774	C→G	5.1%	pseudogene (1297/1713 nt)	lfhA ←	flagellar system protein, promoterless fragment
RA	252,589	G→C	8.7%	A97P (GCA→CCA)	yafO →	ribosome‑dependent mRNA interferase toxin YafO
MC JC	257,908	Δ776 bp	100%		insB9–[crl]	insB9, insA9, [crl]
RA	263,351	T→A	7.7%	S107C (AGC→TGC)	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	263,352	T→A	7.7%	Q106H (CAA→CAT) ‡	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	263,353	T→A	7.4%	Q106L (CAA→CTA) ‡	ykfI ←	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
RA	282,513	T→C	7.8%	L79P (CTG→CCG)	yagE →	CP4‑6 prophage; putative 2‑keto‑3‑deoxygluconate aldolase
RA	304,083	G→T	6.9%	P34T (CCC→ACC)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,085	A→C	6.9%	I33S (ATT→AGT)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,088	G→T	7.2%	T32N (ACT→AAT)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	304,090	A→C	6.4%	G31G (GGT→GGG)	ykgJ ←	putative zinc‑ or iron‑chelating domain‑containing protein YkgJ
RA	311,355	T→A	5.3%	intergenic (‑19/‑757)	ecpR ← / → ykgL	DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL
RA	311,356	T→A	5.4%	intergenic (‑20/‑756)	ecpR ← / → ykgL	DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL
RA	314,255	T→C	10.1%	intergenic (‑450/‑102)	ykgP ← / → eaeH	putative oxidoreductase/putative porin domain‑containing protein EaeH
RA	314,258	G→A	10.1%	intergenic (‑453/‑99)	ykgP ← / → eaeH	putative oxidoreductase/putative porin domain‑containing protein EaeH
RA	324,575	T→C	8.9%	intergenic (+122/+121)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,579	A→G	9.0%	intergenic (+126/+117)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,580	C→G	8.7%	intergenic (+127/+116)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,581	C→T	8.7%	intergenic (+128/+115)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,585	G→A	8.7%	intergenic (+132/+111)	ykgG → / ← ykgH	DUF162 domain‑containing lactate utilization protein YkgG/uncharacterized protein YkgH
RA	324,874	T→G	5.9%	N164T (AAC→ACC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,875	T→A	5.8%	N164Y (AAC→TAC) ‡	ykgH ←	uncharacterized protein YkgH
RA	324,876	C→A	5.8%	R163S (AGG→AGT)	ykgH ←	uncharacterized protein YkgH
RA	327,213	G→C	8.6%	S12* (TCA→TGA)	betA ←	choline dehydrogenase
RA	329,519	C→A	6.2%	Y19* (TAC→TAA)	betT →	choline:H(+) symporter
RA	329,532	C→T	6.9%	L24L (CTG→TTG)	betT →	choline:H(+) symporter
RA	329,542	T→C	6.7%	L27S (TTG→TCG) ‡	betT →	choline:H(+) symporter
RA	329,543	G→C	6.7%	L27F (TTG→TTC) ‡	betT →	choline:H(+) symporter
RA	342,141	G→A	8.7%	P339P (CCG→CCA)	yahJ →	putative deaminase with metallo‑dependent hydrolase domain
RA	342,144	T→C	8.7%	I340I (ATT→ATC)	yahJ →	putative deaminase with metallo‑dependent hydrolase domain
RA	371,064	C→G	6.2%	A263G (GCC→GGC)	mhpB →	3‑carboxyethylcatechol 2,3‑dioxygenase
RA	371,067	T→A	6.2%	I264N (ATT→AAT)	mhpB →	3‑carboxyethylcatechol 2,3‑dioxygenase
RA	371,070	C→G	6.1%	A265G (GCC→GGC)	mhpB →	3‑carboxyethylcatechol 2,3‑dioxygenase
RA	374,682	C→T	8.4%	P272L (CCG→CTG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,683	G→C	8.1%	P272P (CCG→CCC) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,688	G→C	6.6%	R274P (CGA→CCA) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	374,689	A→G	6.5%	R274R (CGA→CGG) ‡	mhpE →	4‑hydroxy‑2‑oxovalerate aldolase
RA	383,897	C→T	14.0%	M13I (ATG→ATA) ‡	yaiP ←	putative glucosyltransferase
RA	383,898	A→G	13.9%	M13T (ATG→ACG) ‡	yaiP ←	putative glucosyltransferase
RA	383,970	A→G	5.2%	K4R (AAA→AGA)	ykiC →	protein YkiC
RA	404,113	A→C	5.8%	A137A (GCA→GCC)	dgcC →	diguanylate cyclase DgcC
RA	404,115	G→C	6.1%	G138A (GGC→GCC)	dgcC →	diguanylate cyclase DgcC
RA	411,077	T→G	5.7%	intergenic (+25/+220)	mak → / ← araJ	manno(fructo)kinase/putative transport protein AraJ
RA	420,941	T→A	6.8%	intergenic (+31/‑45)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,942	G→T	6.8%	intergenic (+32/‑44)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,945	A→C	6.9%	intergenic (+35/‑41)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	420,946	T→A	6.8%	intergenic (+36/‑40)	brnQ → / → proY	branched chain amino acid transporter BrnQ/putative transporter ProY
RA	423,989	A→C	5.7%	N491T (AAC→ACC) ‡	malZ →	maltodextrin glucosidase
RA	423,990	C→G	5.5%	N491K (AAC→AAG) ‡	malZ →	maltodextrin glucosidase
RA	431,107	A→T	7.4%	intergenic (+155/+22)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,109	A→T	7.6%	intergenic (+157/+20)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	431,111	A→T	7.6%	intergenic (+159/+18)	yajD → / ← tsx	HNH nuclease family protein/nucleoside‑specific channel‑forming protein Tsx
RA	436,696	T→C	7.4%	V36V (GTT→GTC)	pgpA →	phosphatidylglycerophosphatase A
RA	436,699	T→A	7.7%	P37P (CCT→CCA)	pgpA →	phosphatidylglycerophosphatase A
RA	436,702	G→A	7.9%	G38G (GGG→GGA)	pgpA →	phosphatidylglycerophosphatase A
RA	436,707:1	+C	5.9%	coding (119/519 nt)	pgpA →	phosphatidylglycerophosphatase A
RA	440,662	C→A	6.2%	S147I (AGC→ATC) ‡	ispA ←	geranyl diphosphate/farnesyl diphosphate synthase
RA	440,663	T→G	5.8%	S147R (AGC→CGC) ‡	ispA ←	geranyl diphosphate/farnesyl diphosphate synthase
RA	441,067	T→G	9.9%	K12T (AAG→ACG)	ispA ←	geranyl diphosphate/farnesyl diphosphate synthase
RA	441,069	A→T	9.7%	V11V (GTT→GTA) ‡	ispA ←	geranyl diphosphate/farnesyl diphosphate synthase
RA	441,071	C→A	10.0%	V11F (GTT→TTT) ‡	ispA ←	geranyl diphosphate/farnesyl diphosphate synthase
RA	442,389	G→A	5.2%	V281I (GTA→ATA)	thiI →	tRNA uridine 4‑sulfurtransferase
RA	443,022	G→A	8.9%	intergenic (+25/+29)	thiI → / ← yajL	tRNA uridine 4‑sulfurtransferase/protein/nucleic acid deglycase 3
RA	443,023	T→C	8.7%	intergenic (+26/+28)	thiI → / ← yajL	tRNA uridine 4‑sulfurtransferase/protein/nucleic acid deglycase 3
RA	480,236	C→G	5.9%	E25Q (GAG→CAG)	hha ←	hemolysin expression modulating protein
RA	480,237	C→G	5.9%	L24L (CTG→CTC)	hha ←	hemolysin expression modulating protein
RA	486,849	C→T	5.9%	A105V (GCG→GTG)	mscK →	potassium dependent, small conductance mechanosensitive channel
RA	494,032	A→T	10.0%	intergenic (+9/‑44)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	494,033	C→G	10.1%	intergenic (+10/‑43)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	494,034	A→T	10.9%	intergenic (+11/‑42)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	494,042	T→A	8.6%	intergenic (+19/‑34)	dnaX → / → ybaB	DNA polymerase III subunit tau/putative nucleoid‑associated protein YbaB
RA	501,462	T→G	6.4%	intergenic (+33/+100)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,463	C→A	6.4%	intergenic (+34/+99)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	501,470	C→T	5.2%	intergenic (+41/+92)	gsk → / ← ybaL	inosine/guanosine kinase/putative transporter YbaL
RA	507,268	G→T	6.2%	noncoding (65/84 nt)	chiX →	small regulatory RNA ChiX
RA	507,271	A→C	6.3%	noncoding (68/84 nt)	chiX →	small regulatory RNA ChiX
RA	508,940	C→G	6.9%	A814P (GCG→CCG)	copA ←	Cu(+) exporting P‑type ATPase
RA	508,943	T→A	6.7%	M813L (ATG→TTG)	copA ←	Cu(+) exporting P‑type ATPase
RA	508,946	C→G	6.5%	A812P (GCA→CCA)	copA ←	Cu(+) exporting P‑type ATPase
RA	517,379	C→A	10.6%	intergenic (+17/+46)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,380	A→T	10.3%	intergenic (+18/+45)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,383	A→T	11.0%	intergenic (+21/+42)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	517,384	T→G	10.9%	intergenic (+22/+41)	fetB → / ← cnoX	putative iron ABC exporter membrane subunit FetB/chaperedoxin
RA	540,460	C→A	5.9%	G438G (GGC→GGA)	allB →	allantoinase
RA	540,461	T→A	6.0%	F439I (TTC→ATC) ‡	allB →	allantoinase
RA	540,462	T→G	6.1%	F439C (TTC→TGC) ‡	allB →	allantoinase
RA	543,059	T→A	10.0%	intergenic (+26/+202)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,062	T→A	11.4%	intergenic (+29/+199)	glxK → / ← allE	glycerate 2‑kinase 2/(S)‑ureidoglycine aminohydrolase
RA	543,748	G→C	5.9%	T100R (ACA→AGA)	allE ←	(S)‑ureidoglycine aminohydrolase
RA	556,021	T→C	11.3%	intergenic (+25/+11)	cysS → / ← ybcI	cysteine‑‑tRNA ligase/conserved inner membrane protein YbcI
JC JC	568,268	IS1 (–) +9 bp	100%	intergenic (+21/‑39)	renD → / → emrE	DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE
RA	569,160	G→T	14.7%	D87Y (GAC→TAC) ‡	ybcK →	DLP12 prophage; putative recombinase
RA	569,161	A→C	14.0%	D87A (GAC→GCC) ‡	ybcK →	DLP12 prophage; putative recombinase
RA	594,946	C→A	10.3%	Q166H (CAG→CAT) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,948	G→C	10.6%	Q166E (CAG→GAG) ‡	cusR ←	DNA‑binding transcriptional activator CusR
RA	594,950	T→G	10.6%	H165P (CAT→CCT)	cusR ←	DNA‑binding transcriptional activator CusR
RA	624,590	T→A	5.8%	intergenic (‑80/‑295)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,659	A→T	8.4%	intergenic (‑149/‑226)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,664	G→T	8.8%	intergenic (‑154/‑221)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,665	G→C	8.0%	intergenic (‑155/‑220)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,666	A→C	8.0%	intergenic (‑156/‑219)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,671	A→T	8.1%	intergenic (‑161/‑214)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	624,733	T→A	5.8%	intergenic (‑223/‑152)	fepB ← / → entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
RA	631,142	A→G	6.8%	S417G (AGT→GGT)	cstA →	carbon starvation protein A
RA	634,310	G→A	5.7%	G242D (GGC→GAC)	ybdL →	methionine‑oxo‑acid transaminase, PLP‑dependent
RA	643,511	G→A	7.3%	intergenic (‑92/+46)	yldA ← / ← rnk	protein YldA/nucleoside diphosphate kinase regulator
RA	650,529	G→A	6.0%	R85R (CGC→CGT)	citD ←	citrate lyase acyl carrier protein
RA	650,532	T→C	5.9%	A84A (GCA→GCG)	citD ←	citrate lyase acyl carrier protein
RA	653,723	G→A	5.8%	A497T (GCT→ACT)	dpiB →	sensory histidine kinase DpiB
RA	657,531	T→G	7.1%	intergenic (+30/+24)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,533	A→T	7.5%	intergenic (+32/+22)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	657,535	C→A	7.1%	intergenic (+34/+20)	cspE → / ← crcB	transcription antiterminator and regulator of RNA stability/F(‑) channel
RA	662,683	A→T	8.6%	intergenic (‑41/+69)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,684	G→T	8.7%	intergenic (‑42/+68)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,685	A→C	8.9%	intergenic (‑43/+67)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	662,686	A→T	8.8%	intergenic (‑44/+66)	ybeD ← / ← dacA	DUF493 domain‑containing protein YbeD/D‑alanyl‑D‑alanine carboxypeptidase DacA
RA	696,793	T→A	10.6%	noncoding (38/75 nt)	glnW ←	tRNA‑Gln
RA	696,798	A→G	10.2%	noncoding (33/75 nt)	glnW ←	tRNA‑Gln
RA	696,801	A→T	10.3%	noncoding (30/75 nt)	glnW ←	tRNA‑Gln
RA	699,130	C→T	9.5%	E16E (GAG→GAA) ‡	asnB ←	asparagine synthetase B
RA	699,132	C→G	9.7%	E16Q (GAG→CAG) ‡	asnB ←	asparagine synthetase B
RA	699,134	A→G	9.6%	V15A (GTT→GCT)	asnB ←	asparagine synthetase B
RA	710,915	T→C	5.2%	intergenic (‑190/+20)	uof ← / ← fldA	RyhB‑regulated fur leader peptide/flavodoxin 1
RA	715,222	G→A	6.5%	intergenic (+24/‑190)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,225	G→T	6.3%	intergenic (+27/‑187)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,226	C→T	6.4%	intergenic (+28/‑186)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,227	A→G	6.4%	intergenic (+29/‑185)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,228	A→C	6.5%	intergenic (+30/‑184)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	715,231	T→C	6.3%	intergenic (+33/‑181)	pgm → / → ybfP	phosphoglucomutase/lipoprotein YbfP
RA	729,376	G→T	15.1%	intergenic (+36/‑207)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,377	A→T	14.8%	intergenic (+37/‑206)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,378	A→T	15.2%	intergenic (+38/‑205)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	729,379	A→C	15.2%	intergenic (+39/‑204)	ybfA → / → rhsC	DUF2517 domain‑containing protein YbfA/rhs element protein RhsC
RA	737,692	T→C	5.3%	pseudogene (793/1062 nt)	ybfL →	putative transposase YbfL
RA	747,895	C→G	9.1%	intergenic (‑126/+26)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,897	G→C	9.0%	intergenic (‑128/+24)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,900	G→C	9.1%	intergenic (‑131/+21)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	747,902	C→G	8.9%	intergenic (‑133/+19)	abrB ← / ← ybgO	putative regulator/putative fimbrial protein YbgO
RA	751,122	G→C	7.1%	Q350E (CAG→GAG)	ybgQ ←	putative fimbrial usher protein YbgQ
RA	769,791	A→T	5.2%	D605V (GAT→GTT)	mngB →	alpha‑mannosidase
RA	769,798	T→G	5.3%	N607K (AAT→AAG)	mngB →	alpha‑mannosidase
RA	769,799	C→A	6.3%	L608I (CTT→ATT)	mngB →	alpha‑mannosidase
RA	769,806	A→T	6.6%	N610I (AAC→ATC)	mngB →	alpha‑mannosidase
RA	770,805	G→A	5.0%	intergenic (+194/‑653)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	770,810	T→C	5.2%	intergenic (+199/‑648)	mngB → / → cydA	alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I
RA	774,356	C→G	17.6%	P16P (CCC→CCG)	ybgE →	cyd operon protein YbgE
RA	774,358	T→A	17.3%	L17Q (CTG→CAG)	ybgE →	cyd operon protein YbgE
RA	774,623	A→T	9.2%	intergenic (+21/‑129)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,633	G→T	7.0%	intergenic (+31/‑119)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,634	C→G	8.3%	intergenic (+32/‑118)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,635	T→G	8.5%	intergenic (+33/‑117)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,636	C→A	8.4%	intergenic (+34/‑116)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,637	C→G	8.3%	intergenic (+35/‑115)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,638	A→C	8.5%	intergenic (+36/‑114)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	774,648	A→T	8.5%	intergenic (+46/‑104)	ybgE → / → ybgC	cyd operon protein YbgE/esterase/thioesterase
RA	786,613	C→A	6.4%	A327A (GCC→GCA)	aroG →	3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive
RA	786,614	T→G	6.3%	C328G (TGC→GGC)	aroG →	3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive
RA	817,739	T→C	5.2%	G232G (GGT→GGC)	moaA →	GTP 3',8'‑cyclase
RA	832,598	G→C	7.6%	T118S (ACC→AGC)	ybiA ←	N‑glycosidase YbiA
RA	843,338	C→G	11.7%	A715P (GCG→CCG)	ybiO ←	moderate conductance mechanosensitive channel
RA	843,342	A→T	8.8%	V713V (GTT→GTA) ‡	ybiO ←	moderate conductance mechanosensitive channel
RA	843,343	A→T	8.9%	V713D (GTT→GAT) ‡	ybiO ←	moderate conductance mechanosensitive channel
RA	843,347	C→G	9.4%	G712R (GGC→CGC)	ybiO ←	moderate conductance mechanosensitive channel
RA	848,350	C→T	5.1%	intergenic (‑346/+58)	glnH ← / ← dps	L‑glutamine ABC transporter periplasmic binding protein/stationary phase nucleoid protein that sequesters iron and protects DNA from damage
RA	848,356	T→A	5.2%	intergenic (‑352/+52)	glnH ← / ← dps	L‑glutamine ABC transporter periplasmic binding protein/stationary phase nucleoid protein that sequesters iron and protects DNA from damage
RA	848,362	A→G	5.2%	intergenic (‑358/+46)	glnH ← / ← dps	L‑glutamine ABC transporter periplasmic binding protein/stationary phase nucleoid protein that sequesters iron and protects DNA from damage
RA	850,993	T→C	8.3%	intergenic (+28/+21)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,995	T→G	8.3%	intergenic (+30/+19)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,996	C→A	8.2%	intergenic (+31/+18)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	850,998	G→A	8.0%	intergenic (+33/+16)	ompX → / ← opgE	outer membrane protein X/phosphoethanolamine transferase
RA	857,576	T→C	12.7%	intergenic (+21/+220)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	857,578	C→G	14.2%	intergenic (+23/+218)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	857,580	G→A	13.3%	intergenic (+25/+216)	ybiT → / ← ybiU	ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU
RA	887,392	T→A	7.0%	intergenic (‑53/‑31)	ybjJ ← / → rcdA	inner membrane protein YbjJ/DNA‑binding transcriptional regulator RcdA
RA	887,393	T→A	7.0%	intergenic (‑54/‑30)	ybjJ ← / → rcdA	inner membrane protein YbjJ/DNA‑binding transcriptional regulator RcdA
RA	897,968:1	+A	13.4%	intergenic (+39/‑21)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	897,973	Δ1 bp	13.0%	intergenic (+44/‑16)	potI → / → ybjO	putrescine ABC transporter membrane subunit PotI/putative inner membrane protein
RA	921,575	G→A	5.9%	R410H (CGC→CAC)	macB →	ABC‑type tripartite efflux pump ATP binding/membrane subunit
RA	921,700	G→A	5.7%	V452I (GTC→ATC)	macB →	ABC‑type tripartite efflux pump ATP binding/membrane subunit
RA	934,186	T→C	6.1%	A321A (GCT→GCC)	ftsK →	cell division DNA translocase FtsK
RA	934,189	A→G	6.2%	V322V (GTA→GTG)	ftsK →	cell division DNA translocase FtsK
RA	934,191	C→T	6.2%	A323V (GCA→GTA)	ftsK →	cell division DNA translocase FtsK
RA	934,195	T→A	6.2%	A324A (GCT→GCA)	ftsK →	cell division DNA translocase FtsK
RA	934,198	T→A	5.9%	A325A (GCT→GCA)	ftsK →	cell division DNA translocase FtsK
RA	934,202	A→G	5.5%	T327A (ACC→GCC) ‡	ftsK →	cell division DNA translocase FtsK
RA	934,204	C→T	5.5%	T327T (ACC→ACT) ‡	ftsK →	cell division DNA translocase FtsK
RA	934,207	G→A	5.5%	T328T (ACG→ACA)	ftsK →	cell division DNA translocase FtsK
RA	958,769	C→G	11.4%	intergenic (+28/‑43)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,771	A→T	11.5%	intergenic (+30/‑41)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	958,773	C→G	11.7%	intergenic (+32/‑39)	serC → / → aroA	phosphoserine/phosphohydroxythreonine aminotransferase/3‑phosphoshikimate 1‑carboxyvinyltransferase
RA	964,148	T→C	10.3%	intergenic (+36/‑172)	ihfB → / → ycaI	integration host factor subunit beta/conserved inner membrane protein YcaI
RA	964,150	T→A	9.8%	intergenic (+38/‑170)	ihfB → / → ycaI	integration host factor subunit beta/conserved inner membrane protein YcaI
RA	964,152	G→A	10.1%	intergenic (+40/‑168)	ihfB → / → ycaI	integration host factor subunit beta/conserved inner membrane protein YcaI
RA	965,169	A→G	6.5%	T284A (ACC→GCC)	ycaI →	conserved inner membrane protein YcaI
RA	980,801	C→T	5.8%	intergenic (+15/‑246)	mukB → / → ldtD	chromosome partitioning protein MukB/L,D‑transpeptidase LdtD
RA	981,808	G→A	6.8%	A254A (GCG→GCA)	ldtD →	L,D‑transpeptidase LdtD
RA	985,853	C→T	8.8%	intergenic (‑144/+41)	aspC ← / ← ompF	aspartate aminotransferase/outer membrane porin F
RA	985,854	A→T	8.5%	intergenic (‑145/+40)	aspC ← / ← ompF	aspartate aminotransferase/outer membrane porin F
RA	985,855	A→T	8.5%	intergenic (‑146/+39)	aspC ← / ← ompF	aspartate aminotransferase/outer membrane porin F
RA	985,856	A→G	8.5%	intergenic (‑147/+38)	aspC ← / ← ompF	aspartate aminotransferase/outer membrane porin F
RA	987,418	A→T	9.5%	intergenic (‑436/+167)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,420	A→C	9.8%	intergenic (‑438/+165)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,421	A→T	9.8%	intergenic (‑439/+164)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,422	G→T	10.3%	intergenic (‑440/+163)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,424	A→T	10.0%	intergenic (‑442/+161)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,560	G→C	5.8%	intergenic (‑578/+25)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	987,561	G→C	5.9%	intergenic (‑579/+24)	ompF ← / ← asnS	outer membrane porin F/asparagine‑‑tRNA ligase
RA	993,254	A→G	8.3%	intergenic (+20/+23)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,255	A→C	8.2%	intergenic (+21/+22)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,258	G→T	9.0%	intergenic (+24/+19)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	993,259	C→T	8.4%	intergenic (+25/+18)	pepN → / ← ssuB	aminopeptidase N/aliphatic sulfonate ABC transporter ATP binding subunit
RA	1,011,926	G→A	8.1%	intergenic (+55/‑75)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,930	T→C	7.5%	intergenic (+59/‑71)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,931	G→C	7.4%	intergenic (+60/‑70)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,932	G→A	7.6%	intergenic (+61/‑69)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,011,936	T→C	7.5%	intergenic (+65/‑65)	uup → / → pqiA	ATP‑binding protein with possible role in replication/intermembrane transport protein PqiA
RA	1,015,912	T→A	12.9%	intergenic (+30/+40)	rmf → / ← fabA	ribosome modulation factor/beta‑hydroxyacyl‑acyl carrier protein dehydratase/isomerase
RA	1,030,732	A→G	5.7%	intergenic (‑64/+27)	tusE ← / ← yccA	sulfur transfer protein TusE/modulator of FtsH protease
RA	1,038,538	G→A	8.5%	A267T (GCA→ACA)	appC →	cytochrome bd‑II ubiquinol oxidase subunit I
RA	1,042,958	T→C	5.6%	Q418R (CAG→CGG)	etk ←	protein‑tyrosine kinase Etk
RA	1,052,257	C→T	5.1%	intergenic (+17/+32)	gnsA → / ← yccM	putative phosphatidylethanolamine synthesis regulator GnsA/putative 4Fe‑4S membrane protein
RA	1,069,786	G→A	5.6%	S18S (AGC→AGT)	rutG ←	pyrimidine:H(+) symporter
RA	1,070,777	G→C	6.1%	A60G (GCA→GGA)	rutE ←	putative malonic semialdehyde reductase
RA	1,089,807	C→T	5.6%	M17I (ATG→ATA)	pgaB ←	poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase
RA	1,101,548	G→A	6.0%	T46M (ACG→ATG)	csgG ←	curli secretion channel
RA	1,104,931	G→T	11.1%	intergenic (+29/‑30)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,932	C→T	10.3%	intergenic (+30/‑29)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,933	A→G	10.3%	intergenic (+31/‑28)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,104,934	A→C	10.3%	intergenic (+32/‑27)	csgA → / → csgC	curlin, major subunit/inhibitor of CsgA amyloid formation
RA	1,113,544	G→A	9.6%	intergenic (+138/‑35)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,113,546	T→A	9.5%	intergenic (+140/‑33)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,113,548	T→C	9.7%	intergenic (+142/‑31)	opgH → / → yceK	osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK
RA	1,116,854	A→C	5.8%	K16N (AAA→AAC)	yceA →	UPF0176 protein YceA
RA	1,116,857	G→T	5.7%	M17I (ATG→ATT)	yceA →	UPF0176 protein YceA
RA	1,121,214	G→T	7.1%	intergenic (‑259/+28)	bssS ← / ← dinI	regulator of biofilm formation/DNA damage‑inducible protein I
RA	1,121,217	A→C	7.9%	intergenic (‑262/+25)	bssS ← / ← dinI	regulator of biofilm formation/DNA damage‑inducible protein I
RA	1,129,394	G→C	9.1%	intergenic (+20/+20)	murJ → / ← flgN	putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN
RA	1,141,148	C→T	8.7%	intergenic (+162/+34)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,150	G→A	8.9%	intergenic (+164/+32)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,151	T→C	8.9%	intergenic (+165/+31)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,141,153	A→G	8.8%	intergenic (+167/+29)	flgL → / ← rne	flagellar hook‑filament junction protein 2/ribonuclease E
RA	1,147,690	G→A	5.5%	A24T (GCA→ACA) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,691	C→T	5.5%	A24V (GCA→GTA) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,692	A→G	5.5%	A24A (GCA→GCG) ‡	plsX →	putative phosphate acyltransferase
RA	1,147,693	T→C	5.5%	L25L (TTG→CTG)	plsX →	putative phosphate acyltransferase
RA	1,158,513	C→A	9.1%	N215K (AAC→AAA)	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,515	T→G	8.9%	V216G (GTA→GGA) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,516	A→T	8.8%	V216V (GTA→GTT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,517	C→A	8.9%	P217T (CCT→ACT) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,158,519	T→G	9.9%	P217P (CCT→CCG) ‡	ptsG →	glucose‑specific PTS enzyme IIBC component
RA	1,159,336	A→C	6.0%	intergenic (+34/+26)	ptsG → / ← fhuE	glucose‑specific PTS enzyme IIBC component/ferric coprogen/ferric rhodotorulic acid outer membrane transporter
RA	1,169,380	T→C	5.6%	intergenic (+50/+32)	bhsA → / ← ldtC	DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA/L,D‑transpeptidase YcfS
RA	1,169,382	C→G	5.5%	intergenic (+52/+30)	bhsA → / ← ldtC	DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA/L,D‑transpeptidase YcfS
RA	1,169,384	G→A	5.5%	intergenic (+54/+28)	bhsA → / ← ldtC	DUF1471 domain‑containing multiple stress resistance outer membrane protein BhsA/L,D‑transpeptidase YcfS
RA	1,187,090	G→C	7.1%	intergenic (+20/+29)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,187,091	T→A	7.0%	intergenic (+21/+28)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,187,092	G→C	7.1%	intergenic (+22/+27)	pepT → / ← roxA	peptidase T/ribosomal protein‑arginine oxygenase
RA	1,192,685	A→C	5.2%	R363R (CGT→CGG)	mnmA ←	tRNA‑specific 2‑thiouridylase
RA	1,194,645:1	+A	12.7%	coding (307/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,650	G→A	12.5%	P101L (CCG→CTG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,653	T→C	12.5%	Q100R (CAG→CGG)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,194,657	Δ1 bp	12.8%	coding (295/654 nt)	rluE ←	23S rRNA pseudouridine(2457) synthase
RA	1,196,220	C→T	100%	H366H (CAC→CAT)	icd →	isocitrate dehydrogenase
RA	1,196,232	C→T	100%	T370T (ACC→ACT)	icd →	isocitrate dehydrogenase
RA	1,196,245	T→C	100%	L375M (TTA→CTG)	icd →	isocitrate dehydrogenase
RA	1,196,247	A→G	100%	L375M (TTA→CTG)	icd →	isocitrate dehydrogenase
RA	1,211,610	A→G	6.4%	intergenic (+33/+70)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,612	A→T	6.4%	intergenic (+35/+68)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,211,614	C→T	6.2%	intergenic (+37/+66)	icdC → / ← iraM	protein IcdC/anti‑adaptor protein IraM, inhibitor of sigma(S) proteolysis
RA	1,212,470	A→C	5.3%	intergenic (‑166/+70)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,475	T→C	5.4%	intergenic (‑171/+65)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,476	G→C	5.4%	intergenic (‑172/+64)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,477	G→A	5.9%	intergenic (‑173/+63)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,212,482	G→T	5.6%	intergenic (‑178/+58)	ymgK ← / ← ymgL	protein YmgK/protein YmgL
RA	1,214,511	G→C	8.6%	P322R (CCT→CGT)	bluF ←	blue light‑responsive regulator of BluR
RA	1,217,118	T→G	5.3%	intergenic (+122/‑210)	ymgC → / → pdeG	protein YmgC/putative c‑di‑GMP phosphodiesterase PdeG
RA	1,224,239	A→T	5.9%	intergenic (+332/+40)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,224,242	A→T	7.3%	intergenic (+335/+37)	ycgI → / ← minE	protein YcgI/Z‑ring positioning protein MinE
RA	1,226,832	T→G	6.7%	F78C (TTT→TGT)	ycgJ →	PF05666 family protein YcgJ
RA	1,226,835	C→A	6.7%	T79K (ACA→AAA)	ycgJ →	PF05666 family protein YcgJ
RA	1,233,154	T→A	8.4%	intergenic (‑124/+22)	dsbB ← / ← nhaB	protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB
RA	1,233,157	T→A	8.3%	intergenic (‑127/+19)	dsbB ← / ← nhaB	protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB
RA	1,235,686	A→G	8.8%	intergenic (+29/+23)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,687	A→T	8.6%	intergenic (+30/+22)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,688	A→T	10.3%	intergenic (+31/+21)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,235,689	C→T	8.8%	intergenic (+32/+20)	fadR → / ← ycgB	DNA‑binding transcriptional dual regulator FadR/PF04293 family protein YcgB
RA	1,237,608	T→C	9.5%	V13A (GTT→GCT)	dadA →	D‑amino acid dehydrogenase
RA	1,237,611	C→G	9.4%	A14G (GCC→GGC)	dadA →	D‑amino acid dehydrogenase
RA	1,237,614	G→A	9.2%	S15N (AGC→AAC)	dadA →	D‑amino acid dehydrogenase
RA	1,257,396	G→T	6.0%	T139T (ACC→ACA)	ychF ←	redox‑responsive ATPase YchF
RA	1,260,901	C→T	7.6%	intergenic (‑98/+27)	dauA ← / ← prs	aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase
RA	1,260,904	A→G	7.3%	intergenic (‑101/+24)	dauA ← / ← prs	aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase
RA	1,292,472	G→A	9.1%	intergenic (+107/+37)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,473	C→G	9.0%	intergenic (+108/+36)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
RA	1,292,474	T→C	8.7%	intergenic (+109/+35)	galU → / ← hns	UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS
JC JC	1,293,032	IS1 (–) +8 bp	100%	intergenic (‑110/‑488)	hns ← / → tdk	DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase
RA	1,299,267:1	+A	6.2%	intergenic (+22/‑264)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,270	C→G	6.3%	intergenic (+25/‑261)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
RA	1,299,273	Δ1 bp	6.2%	intergenic (+28/‑258)	ychE → / → insH21	putative inner membrane protein/IS5 transposase and trans‑activator
MC JC	1,299,499	Δ1,199 bp	100%		insH21	insH21
RA	1,311,285	A→C	5.9%	E66A (GAG→GCG)	tonB →	Ton complex subunit TonB
RA	1,311,830	A→G	14.5%	intergenic (+22/+18)	tonB → / ← yciA	Ton complex subunit TonB/acyl‑CoA thioesterase
RA	1,311,831	C→T	14.5%	intergenic (+23/+17)	tonB → / ← yciA	Ton complex subunit TonB/acyl‑CoA thioesterase
RA	1,314,682	A→T	6.2%	intergenic (+24/+36)	ompW → / ← yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
RA	1,314,683	T→A	6.2%	intergenic (+25/+35)	ompW → / ← yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
RA	1,314,684	A→T	6.1%	intergenic (+26/+34)	ompW → / ← yciE	outer membrane protein W/DUF892 domain‑containing protein YciE
RA	1,315,477	A→C	5.2%	R98R (CGT→CGG)	yciF ←	DUF892 domain‑containing protein YciF
RA	1,322,394	C→G	6.2%	D185H (GAC→CAC)	trpE ←	anthranilate synthase subunit TrpE
RA	1,322,398	C→G	5.6%	V183V (GTG→GTC)	trpE ←	anthranilate synthase subunit TrpE
RA	1,324,837	A→C	7.9%	Y31S (TAT→TCT) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,838	T→A	7.8%	Y31* (TAT→TAA) ‡	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,324,839	G→T	7.9%	E32* (GAA→TAA)	yciQ →	DUF2207 domain‑containing protein YciQ
RA	1,335,681	T→C	6.9%	intergenic (+14/‑150)	ymiC → / → acnA	protein YmiC/aconitate hydratase 1
RA	1,344,033	A→G	5.5%	L105P (CTG→CCG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,036	G→C	6.5%	T104S (ACT→AGT)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,344,039	C→T	5.5%	R103Q (CGG→CAG)	yciT ←	putative DNA‑binding transcriptional regulator YciT
RA	1,357,224	G→A	8.8%	intergenic (‑114/+199)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,227	A→G	8.7%	intergenic (‑117/+196)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,230	T→A	7.7%	intergenic (‑120/+193)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,233	C→T	8.5%	intergenic (‑123/+190)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,357,236	T→C	8.6%	intergenic (‑126/+187)	sapA ← / ← ymjA	putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA
RA	1,365,448	T→A	6.2%	L406Q (CTG→CAG)	puuB →	gamma‑glutamylputrescine oxidase
RA	1,365,454	T→C	6.4%	V408A (GTG→GCG)	puuB →	gamma‑glutamylputrescine oxidase
RA	1,366,569	C→T	5.4%	S340S (AGC→AGT)	puuE →	4‑aminobutyrate aminotransferase PuuE
RA	1,370,026	T→A	9.0%	intergenic (+23/‑190)	pspE → / → ycjM	thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase
RA	1,370,029	T→A	9.0%	intergenic (+26/‑187)	pspE → / → ycjM	thiosulfate sulfurtransferase PspE/glucosylglycerate phosphorylase
RA	1,371,933	T→A	5.8%	L9I (TTA→ATA)	ycjN →	putative ABC transporter periplasmic binding protein YcjN
RA	1,371,936	T→A	5.7%	S10T (TCA→ACA)	ycjN →	putative ABC transporter periplasmic binding protein YcjN
RA	1,376,952	T→A	8.9%	C41S (TGT→AGT) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,376,953	G→C	8.9%	C41S (TGT→TCT) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,376,954	T→A	8.9%	C41* (TGT→TGA) ‡	ycjS →	putative oxidoreductase YcjS
RA	1,381,542	A→G	7.7%	pseudogene (722/969 nt)	ycjV →	putative ABC transporter ATP‑binding protein YcjV
RA	1,410,941	C→A	5.4%	intergenic (+57/+72)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,947	T→G	5.1%	intergenic (+63/+66)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,949	G→C	5.1%	intergenic (+65/+64)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,951	C→A	5.5%	intergenic (+67/+62)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,410,957	T→G	5.6%	intergenic (+73/+56)	dbpA → / ← ttcA	ATP‑dependent RNA helicase DbpA/tRNA cytosine(32) 2‑sulfurtransferase TtcA
RA	1,413,029	G→C	5.3%	S69R (AGC→AGG) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,031	T→A	5.5%	S69C (AGC→TGC) ‡	intR ←	Rac prophage; putative integrase
RA	1,413,033	G→C	5.5%	S68C (TCC→TGC)	intR ←	Rac prophage; putative integrase
RA	1,413,968	A→G	5.0%	intergenic (‑41/+16)	ralR ← / ← recT	Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation
RA	1,426,178	A→T	7.3%	intergenic (+198/‑276)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,417	T→C	9.0%	intergenic (+437/‑37)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,418	T→G	8.9%	intergenic (+438/‑36)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,421	C→A	8.6%	intergenic (+441/‑33)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,426,422	G→A	8.8%	intergenic (+442/‑32)	ydaY → / → ynaA	Rac prophage; putative uncharacterized protein YdaY/Rac prophage; putative prophage tail length tape measure domain‑containing protein YnaA
RA	1,441,833	G→C	5.5%	intergenic (‑90/+21)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,835	A→T	5.6%	intergenic (‑92/+19)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,441,837	G→C	6.0%	intergenic (‑94/+17)	hslJ ← / ← ldhA	lipoprotein implicated in Novobiocin resistance/D‑lactate dehydrogenase
RA	1,446,357:1	+T	6.1%	intergenic (+151/+21)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,362	Δ1 bp	6.0%	intergenic (+156/+16)	ydbL → / ← feaR	DUF1318 domain‑containing protein YdbL/DNA‑binding transcriptional activator FeaR
RA	1,446,785	T→A	7.7%	T167S (ACA→TCA)	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,786	T→A	7.6%	E166D (GAA→GAT) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,446,787	T→A	7.7%	E166V (GAA→GTA) ‡	feaR ←	DNA‑binding transcriptional activator FeaR
RA	1,449,050	T→A	7.4%	intergenic (+32/+26)	feaB → / ← tynA	phenylacetaldehyde dehydrogenase/copper‑containing amine oxidase
RA	1,449,799	C→G	5.8%	T517T (ACG→ACC)	tynA ←	copper‑containing amine oxidase
RA	1,449,802	A→G	5.9%	A516A (GCT→GCC) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,803	G→C	6.5%	A516G (GCT→GGT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,804	C→T	6.0%	A516T (GCT→ACT) ‡	tynA ←	copper‑containing amine oxidase
RA	1,449,807	C→G	6.0%	G515R (GGT→CGT)	tynA ←	copper‑containing amine oxidase
RA	1,457,528	G→A	5.2%	R11Q (CGA→CAA)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,530	G→T	5.1%	V12L (GTA→TTA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,531	T→A	5.2%	V12E (GTA→GAA) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,532	A→C	5.2%	V12V (GTA→GTC) ‡	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,457,534	T→C	5.4%	L13S (TTG→TCG)	paaF →	putative 2,3‑dehydroadipyl‑CoA hydratase
RA	1,461,488	G→C	5.9%	G199A (GGC→GCC)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,491	T→G	5.6%	I200S (ATT→AGT) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,492	T→A	5.5%	I200I (ATT→ATA) ‡	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,493	C→A	5.6%	L201M (CTG→ATG)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,461,496	G→C	5.7%	A202P (GCT→CCT)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,462,029	T→C	5.1%	G379G (GGT→GGC)	paaJ →	beta‑ketoadipyl‑CoA thiolase
RA	1,491,905	A→T	5.9%	intergenic (+55/+17)	ydcA → / ← hokB	protein YdcA/toxin HokB
RA	1,491,906	A→T	5.9%	intergenic (+56/+16)	ydcA → / ← hokB	protein YdcA/toxin HokB
RA	1,496,279	G→A	8.4%	R331H (CGC→CAC)	ydcJ →	DUF1338 domain‑containing protein YdcJ
RA	1,498,892	A→T	6.8%	intergenic (+17/‑46)	ydcH → / → rimL	protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,498,894	C→G	7.1%	intergenic (+19/‑44)	ydcH → / → rimL	protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,498,896	A→T	6.9%	intergenic (+21/‑42)	ydcH → / → rimL	protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase
RA	1,502,080	C→T	8.9%	G173G (GGC→GGT)	tehB →	tellurite methyltransferase
RA	1,502,082	A→C	9.0%	E174A (GAG→GCG)	tehB →	tellurite methyltransferase
RA	1,502,084	C→G	8.8%	L175V (CTG→GTG)	tehB →	tellurite methyltransferase
RA	1,502,089	C→G	9.0%	H176Q (CAC→CAG)	tehB →	tellurite methyltransferase
RA	1,502,091	G→T	9.2%	R177L (CGC→CTC)	tehB →	tellurite methyltransferase
RA	1,502,093	A→G	9.2%	T178A (ACC→GCC)	tehB →	tellurite methyltransferase
RA	1,504,769	A→G	5.8%	L351L (TTA→TTG)	insQ →	putative insertion element transposase InsQ
RA	1,511,139	G→C	9.5%	W379C (TGG→TGC)	ydcR →	fused putative DNA‑binding transcriptional regulator/putative aminotransferase YdcR
RA	1,517,481	C→G	9.0%	R31R (CGC→CGG)	ortT →	orphan toxin OrtT
RA	1,517,484	C→G	9.0%	I32M (ATC→ATG)	ortT →	orphan toxin OrtT
RA	1,520,080	G→T	6.5%	intergenic (+16/‑182)	curA → / → mcbR	NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional dual regulator McbR
RA	1,520,083	A→C	6.3%	intergenic (+19/‑179)	curA → / → mcbR	NADPH‑dependent curcumin/dihydrocurcumin reductase/DNA‑binding transcriptional dual regulator McbR
RA	1,520,584	A→G	7.5%	D108G (GAC→GGC) ‡	mcbR →	DNA‑binding transcriptional dual regulator McbR
RA	1,520,585	C→T	7.6%	D108D (GAC→GAT) ‡	mcbR →	DNA‑binding transcriptional dual regulator McbR
RA	1,520,941	C→T	7.6%	intergenic (+14/+22)	mcbR → / ← yncD	DNA‑binding transcriptional dual regulator McbR/putative TonB‑dependent outer membrane receptor
RA	1,520,943	A→T	7.5%	intergenic (+16/+20)	mcbR → / ← yncD	DNA‑binding transcriptional dual regulator McbR/putative TonB‑dependent outer membrane receptor
RA	1,520,944	A→T	7.5%	intergenic (+17/+19)	mcbR → / ← yncD	DNA‑binding transcriptional dual regulator McbR/putative TonB‑dependent outer membrane receptor
RA	1,520,946	A→G	7.5%	intergenic (+19/+17)	mcbR → / ← yncD	DNA‑binding transcriptional dual regulator McbR/putative TonB‑dependent outer membrane receptor
RA	1,524,458:1	+T	7.0%	intergenic (+90/+23)	yncE → / ← ansP	PQQ‑like domain‑containing protein YncE/L‑asparagine transporter
RA	1,524,463	Δ1 bp	6.9%	intergenic (+95/+18)	yncE → / ← ansP	PQQ‑like domain‑containing protein YncE/L‑asparagine transporter
RA	1,526,598	G→A	5.7%	A118T (GCT→ACT)	yncG →	putative glutathione S‑transferase YncG
RA	1,530,490	T→C	5.5%	T5T (ACA→ACG)	yncO ←	protein YncO
RA	1,530,496	G→T	7.2%	Y3* (TAC→TAA)	yncO ←	protein YncO
RA	1,530,499	A→C	7.5%	I2M (ATT→ATG)	yncO ←	protein YncO
RA	1,530,505	G→A	7.7%	intergenic (‑1/‑81)	yncO ← / → yncI	protein YncO/putative transposase YncI
RA	1,534,890	G→A	14.6%	intergenic (+21/+75)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,891	C→A	14.6%	intergenic (+22/+74)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,897	A→T	15.2%	intergenic (+28/+68)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,898	A→T	15.2%	intergenic (+29/+67)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,904	T→G	14.9%	intergenic (+35/+61)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,534,905	T→C	14.9%	intergenic (+36/+60)	nhoA → / ← yddE	arylamine N‑acetyltransferase/PF02567 family protein YddE
RA	1,563,281:1	+C	6.3%	intergenic (‑205/+53)	ddpX ← / ← dosP	D‑alanyl‑D‑alanine dipeptidase/oxygen‑sensing c‑di‑GMP phosphodiesterase DosP
RA	1,563,288	G→C	6.1%	intergenic (‑212/+46)	ddpX ← / ← dosP	D‑alanyl‑D‑alanine dipeptidase/oxygen‑sensing c‑di‑GMP phosphodiesterase DosP
RA	1,563,295	Δ1 bp	6.0%	intergenic (‑219/+39)	ddpX ← / ← dosP	D‑alanyl‑D‑alanine dipeptidase/oxygen‑sensing c‑di‑GMP phosphodiesterase DosP
RA	1,567,466	G→C	6.5%	intergenic (‑247/+38)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,467	G→T	6.7%	intergenic (‑248/+37)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,469	A→T	6.4%	intergenic (‑250/+35)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,471	A→C	6.7%	intergenic (‑252/+33)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,567,472	G→C	6.3%	intergenic (‑253/+32)	yddY ← / ← yddW	protein YddY/putative lipoprotein YddW
RA	1,576,390	G→C	8.0%	I410M (ATC→ATG)	yddB ←	putative TonB‑dependent receptor
RA	1,576,393	G→C	6.2%	Y409* (TAC→TAG)	yddB ←	putative TonB‑dependent receptor
RA	1,579,563	G→T	6.9%	G7* (GGA→TGA) ‡	yneP →	protein YneP
RA	1,579,564	G→A	7.0%	G7E (GGA→GAA) ‡	yneP →	protein YneP
RA	1,579,569	T→C	6.9%	Y9H (TAT→CAT) ‡	yneP →	protein YneP
RA	1,579,570	A→C	6.7%	Y9S (TAT→TCT) ‡	yneP →	protein YneP
RA	1,585,149	Δ1 bp	6.5%	coding (1338/2280 nt)	ydeP ←	putative oxidoreductase YdeP
RA	1,585,156:1	+C	10.0%	coding (1331/2280 nt)	ydeP ←	putative oxidoreductase YdeP
RA	1,597,272	T→A	10.7%	pseudogene (815/5422 nt)	yneO ←	AIDA‑I family autotransporter YneO
RA	1,598,527	T→G	5.1%	intergenic (‑441/+90)	yneO ← / ← lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase
RA	1,598,529	A→T	5.1%	intergenic (‑443/+88)	yneO ← / ← lsrK	AIDA‑I family autotransporter YneO/autoinducer‑2 kinase
RA	1,602,236	A→T	11.2%	Q249H (CAA→CAT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,602,239	A→T	10.1%	K250N (AAA→AAT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,602,242	A→T	9.6%	L251F (TTA→TTT)	lsrA →	Autoinducer‑2 ABC transporter ATP binding subunit
RA	1,609,555	Δ1 bp	7.7%	coding (1126/1452 nt)	uxaB ←	tagaturonate reductase
RA	1,609,561:1	+C	7.7%	coding (1120/1452 nt)	uxaB ←	tagaturonate reductase
RA	1,627,710	T→C	5.2%	L65P (CTG→CCG) ‡	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,627,711	G→A	5.3%	L65L (CTG→CTA) ‡	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,627,717	G→T	5.2%	S67S (TCG→TCT)	ydfG →	3‑hydroxy acid dehydrogenase
RA	1,650,147	G→A	7.0%	pseudogene (70/921 nt)	ydfE →	Qin prophage; protein YdfE
RA	1,650,148	T→C	7.2%	pseudogene (71/921 nt)	ydfE →	Qin prophage; protein YdfE
RA	1,652,449	G→T	5.4%	pseudogene (938/1197 nt)	intQ →	Qin prophage; putative defective integrase
RA	1,660,200	C→G	7.0%	A711G (GCC→GGC)	ynfE →	putative selenate reductase YnfE
RA	1,673,545	C→A	5.3%	intergenic (‑44/‑368)	mdtJ ← / → tqsA	multidrug/spermidine efflux pump membrane subunit MdtJ/autoinducer 2 exporter
RA	1,674,171	Δ1 bp	9.0%	coding (259/1035 nt)	tqsA →	autoinducer 2 exporter
RA	1,674,177	G→T	12.3%	E89* (GAG→TAG) ‡	tqsA →	autoinducer 2 exporter
RA	1,674,178	A→C	12.2%	E89A (GAG→GCG) ‡	tqsA →	autoinducer 2 exporter
RA	1,674,183:1	+G	11.4%	coding (271/1035 nt)	tqsA →	autoinducer 2 exporter
RA	1,674,955	A→T	6.6%	intergenic (+8/+17)	tqsA → / ← pntB	autoinducer 2 exporter/pyridine nucleotide transhydrogenase subunit beta
RA	1,674,958	A→T	6.6%	intergenic (+11/+14)	tqsA → / ← pntB	autoinducer 2 exporter/pyridine nucleotide transhydrogenase subunit beta
RA	1,679,639	A→C	6.0%	Q28P (CAA→CCA)	ydgI →	putative arginine:ornithine antiporter
RA	1,679,641	A→T	5.9%	N29Y (AAT→TAT)	ydgI →	putative arginine:ornithine antiporter
RA	1,679,644	A→T	6.0%	M30L (ATG→TTG) ‡	ydgI →	putative arginine:ornithine antiporter
RA	1,679,646	G→T	6.2%	M30I (ATG→ATT) ‡	ydgI →	putative arginine:ornithine antiporter
RA	1,685,166	T→C	6.1%	L303P (CTG→CCG)	tus →	DNA replication terminus site‑binding protein
RA	1,689,821	T→G	5.5%	intergenic (+70/‑31)	manA → / → ydgA	mannose‑6‑phosphate isomerase/conserved protein YdgA
RA	1,692,976	T→C	8.5%	T430A (ACG→GCG)	uidB ←	glucuronide:H(+) symporter
RA	1,692,977	G→T	8.5%	L429L (CTC→CTA) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,692,978	A→C	8.6%	L429R (CTC→CGC) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,692,979	G→A	8.7%	L429F (CTC→TTC) ‡	uidB ←	glucuronide:H(+) symporter
RA	1,703,251	A→T	11.8%	intergenic (+17/+17)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,703,252	A→T	12.3%	intergenic (+18/+16)	add → / ← ydgJ	adenosine deaminase/putative oxidoreductase YdgJ
RA	1,708,805	T→A	45.0%	R629R (CGT→CGA)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC
RA	1,715,919	T→G	10.0%	intergenic (‑30/+29)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,920	T→A	10.0%	intergenic (‑31/+28)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,921	T→A	10.1%	intergenic (‑32/+27)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,715,922	C→A	10.0%	intergenic (‑33/+26)	pdxY ← / ← tyrS	pyridoxal kinase 2/tyrosine‑‑tRNA ligase
RA	1,720,364	G→T	9.1%	intergenic (+21/+26)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,365	T→A	8.1%	intergenic (+22/+25)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,366	T→A	8.0%	intergenic (+23/+24)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,720,367	A→C	9.2%	intergenic (+24/+23)	slyB → / ← slyA	outer membrane lipoprotein SlyB/DNA‑binding transcriptional dual regulator SlyA
RA	1,722,176	C→T	6.4%	A19V (GCG→GTG)	ydhK →	putative transporter YdhK
RA	1,747,027	T→A	5.1%	intergenic (+22/‑104)	ydhR → / → ydhS	putative monooxygenase YdhR/FAD/NAD(P) binding domain‑containing protein YdhS
RA	1,768,018	T→C	6.7%	Q223R (CAG→CGG)	ydiJ ←	putative FAD‑linked oxidoreductase
RA	1,768,020	A→T	6.4%	R222R (CGT→CGA) ‡	ydiJ ←	putative FAD‑linked oxidoreductase
RA	1,768,022	G→A	6.7%	R222C (CGT→TGT) ‡	ydiJ ←	putative FAD‑linked oxidoreductase
RA	1,778,364	C→T	5.2%	intergenic (+17/+26)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,367	C→G	5.4%	intergenic (+20/+23)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,372	C→G	5.3%	intergenic (+25/+18)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,778,375	A→G	5.4%	intergenic (+28/+15)	ydiO → / ← ydiP	putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP
RA	1,788,336	A→T	10.2%	intergenic (+58/‑99)	ppsR → / → aroH	posphoenolpyruvate synthetase regulatory protein/3‑deoxy‑7‑phosphoheptulonate synthase, Trp‑sensitive
RA	1,795,227	A→T	8.7%	intergenic (‑75/+26)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,795,228	G→C	9.0%	intergenic (‑76/+25)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,795,229	A→T	9.0%	intergenic (‑77/+24)	btuC ← / ← ihfA	vitamin B12 ABC transporter membrane subunit/integration host factor subunit alpha
RA	1,799,167	A→C	5.9%	intergenic (‑225/+59)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,168	C→A	5.9%	intergenic (‑226/+58)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,169	T→G	5.8%	intergenic (‑227/+57)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,799,170	G→T	5.8%	intergenic (‑228/+56)	pheS ← / ← pheM	phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide
RA	1,808,680	T→A	9.8%	intergenic (+24/+17)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,682	C→G	10.5%	intergenic (+26/+15)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,808,684	T→A	9.2%	intergenic (+28/+13)	yniA → / ← yniB	putative kinase YniA/uncharacterized protein YniB
RA	1,822,071	G→A	5.9%	I62I (ATC→ATT) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,822,072	A→T	5.9%	I62N (ATC→AAC) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,822,073	T→C	5.9%	I62V (ATC→GTC) ‡	osmE ←	osmotically‑inducible lipoprotein OsmE
RA	1,823,335	G→C	6.5%	intergenic (+50/‑180)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,823,338	G→C	6.8%	intergenic (+53/‑177)	nadE → / → cho	NAD synthetase, NH3‑dependent/endonuclease of nucleotide excision repair
RA	1,827,811	T→G	6.3%	K150T (AAA→ACA)	astB ←	N‑succinylarginine dihydrolase
RA	1,840,795	G→A	7.4%	L203L (CTC→CTT)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,798	C→T	7.4%	S202S (TCG→TCA) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,799	G→C	7.5%	S202W (TCG→TGG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,800	A→G	7.7%	S202P (TCG→CCG) ‡	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,840,803	T→C	7.9%	K201E (AAG→GAG)	ynjF ←	putative phosphatidyl transferase, inner membrane protein
RA	1,850,715	Δ1 bp	11.0%	intergenic (+22/‑145)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,850,719:1	+T	11.3%	intergenic (+26/‑141)	sppA → / → ansA	protease IV, a signal peptide peptidase/L‑asparaginase 1
RA	1,852,038	A→C	6.8%	Q51P (CAG→CCG) ‡	pncA →	nicotinamidase
RA	1,852,039	G→T	7.5%	Q51H (CAG→CAT) ‡	pncA →	nicotinamidase
RA	1,865,682	G→C	11.3%	intergenic (‑46/+44)	yeaE ← / ← mipA	methylglyoxal reductase YeaE/scaffolding protein that interacts with murein polymerase and murein hydrolase
RA	1,868,859	Δ1 bp	10.0%	intergenic (+17/‑96)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,868,865:1	+G	10.3%	intergenic (+23/‑90)	yeaG → / → yeaH	protein kinase YeaG/DUF444 domain‑containing protein YeaH
RA	1,870,253	T→C	5.8%	intergenic (+15/‑132)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,254	C→G	5.7%	intergenic (+16/‑131)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,257	T→A	5.6%	intergenic (+19/‑128)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,260	C→G	5.7%	intergenic (+22/‑125)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,870,261	G→A	5.6%	intergenic (+23/‑124)	yeaH → / → cdgI	DUF444 domain‑containing protein YeaH/putative c‑di‑GMP binding protein CdgI
RA	1,872,230	G→C	5.3%	V64L (GTG→CTG) ‡	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,872,232	G→C	5.1%	V64V (GTG→GTC) ‡	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,872,578	A→G	6.5%	N180D (AAC→GAC)	dgcJ →	putative diguanylate cyclase DgcJ
RA	1,873,691	T→C	5.0%	S40P (TCA→CCA)	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,694	G→C	5.1%	E41Q (GAA→CAA) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,695	A→G	5.1%	E41G (GAA→GGA) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,700	C→T	5.0%	R43C (CGT→TGT) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,701	G→C	5.1%	R43P (CGT→CCT) ‡	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,873,704	G→A	5.1%	G44D (GGC→GAC)	yeaK →	mischarged aminoacyl‑tRNA deacylase
RA	1,886,238	G→A	7.1%	A132T (GCA→ACA)	yeaX →	carnitine monooxygenase subunit YeaX
RA	1,888,030	A→T	6.8%	intergenic (‑39/+31)	rnd ← / ← fadD	RNase D/fatty acyl‑CoA synthetase
RA	1,893,249	G→C	5.1%	intergenic (‑14/‑118)	yoaA ← / → yoaB	putative 5' to 3' DNA helicase implicated in DNA repair/RutC family protein YoaB
RA	1,895,059	G→C	6.5%	Q85H (CAG→CAC)	pabB →	aminodeoxychorismate synthase subunit 1
RA	1,895,060	G→C	6.2%	V86L (GTG→CTG)	pabB →	aminodeoxychorismate synthase subunit 1
RA	1,900,671	C→G	8.0%	T305T (ACG→ACC) ‡	yoaE ←	putative inner membrane protein
RA	1,900,672	G→A	8.0%	T305M (ACG→ATG) ‡	yoaE ←	putative inner membrane protein
RA	1,900,679	T→C	7.3%	I303V (ATC→GTC)	yoaE ←	putative inner membrane protein
RA	1,900,680	C→G	7.3%	G302G (GGG→GGC)	yoaE ←	putative inner membrane protein
RA	1,920,848	C→T	7.1%	A209V (GCG→GTG)	rsmF →	16S rRNA m(5)C1407 methyltransferase
RA	1,932,094	C→G	13.3%	intergenic (+35/+21)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,932,095	T→A	13.3%	intergenic (+36/+20)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,932,096	C→G	13.0%	intergenic (+37/+19)	purT → / ← eda	phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase
RA	1,946,590	T→A	5.3%	S114T (TCG→ACG)	yebB →	putative papain‑like amidase YebB
RA	1,950,954	Δ1 bp	8.4%	coding (123/567 nt)	yecD →	putative hydrolase
RA	1,950,965:1	+C	7.7%	coding (134/567 nt)	yecD →	putative hydrolase
RA	1,965,904	A→G	6.6%	I96I (ATT→ATC)	flhB ←	flagellar biosynthesis protein FlhB
RA	1,965,907	C→T	6.4%	L95L (CTG→CTA)	flhB ←	flagellar biosynthesis protein FlhB
RA	1,966,360	A→G	7.4%	intergenic (‑169/+33)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,363	A→G	7.3%	intergenic (‑172/+30)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,368	G→A	7.4%	intergenic (‑177/+25)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,369	T→C	7.4%	intergenic (‑178/+24)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,374	C→T	7.4%	intergenic (‑183/+19)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,966,377	C→T	7.7%	intergenic (‑186/+16)	flhB ← / ← cheZ	flagellar biosynthesis protein FlhB/chemotaxis protein CheZ
RA	1,971,920	G→T	5.2%	Q258K (CAA→AAA)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,923	T→C	5.2%	M257V (ATG→GTG)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,926	G→A	5.4%	H256Y (CAT→TAT)	tar ←	methyl‑accepting chemotaxis protein Tar
RA	1,971,929	A→C	5.1%	S255A (TCA→GCA)	tar ←	methyl‑accepting chemotaxis protein Tar
MC JC	1,978,503	Δ776 bp	100%		insB‑5–insA‑5	insB‑5, insA‑5
JC JC	1,979,486	IS5 (+) +4 bp	100%	intergenic (‑271/‑264)	insA‑5 ← / → uspC	IS1 protein InsA/universal stress protein C
RA	1,980,240	C→A	7.2%	S458I (AGC→ATC) ‡	otsA ←	trehalose‑6‑phosphate synthase
RA	1,980,241	T→A	6.9%	S458C (AGC→TGC) ‡	otsA ←	trehalose‑6‑phosphate synthase
RA	1,980,242	T→G	6.9%	R457R (CGA→CGC)	otsA ←	trehalose‑6‑phosphate synthase
RA	1,982,500	T→C	7.9%	intergenic (‑113/+54)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,501	T→C	7.9%	intergenic (‑114/+53)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,504	G→A	7.7%	intergenic (‑117/+50)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,982,505	G→A	8.7%	intergenic (‑118/+49)	otsB ← / ← araH	trehalose‑6‑phosphate phosphatase/arabinose ABC transporter membrane subunit
RA	1,987,450:1	+A	5.7%	intergenic (+22/+57)	ftnB → / ← yecJ	putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ
RA	1,990,922	C→T	6.1%	intergenic (+30/+32)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,926	A→C	6.0%	intergenic (+34/+28)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,927	A→G	6.0%	intergenic (+35/+27)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,932	C→T	6.0%	intergenic (+40/+22)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,933	G→T	6.3%	intergenic (+41/+21)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,990,937	A→G	6.0%	intergenic (+45/+17)	tyrP → / ← yecA	tyrosine:H(+) symporter/UPF0149 family protein YecA
RA	1,992,083	G→C	5.2%	noncoding (35/76 nt)	glyW ←	tRNA‑Gly
RA	2,021,309	C→T	5.7%	T74T (ACC→ACT)	fliN →	flagellar motor switch protein FliN
RA	2,026,683	G→A	9.1%	D445D (GAC→GAT) ‡	dgcQ ←	putative diguanylate cyclase DgcQ
RA	2,026,685	C→T	9.1%	D445N (GAC→AAC) ‡	dgcQ ←	putative diguanylate cyclase DgcQ
RA	2,026,687	T→A	9.2%	N444I (AAT→ATT)	dgcQ ←	putative diguanylate cyclase DgcQ
RA	2,026,689	A→G	9.2%	I443I (ATT→ATC) ‡	dgcQ ←	putative diguanylate cyclase DgcQ
RA	2,026,691	T→C	9.1%	I443V (ATT→GTT) ‡	dgcQ ←	putative diguanylate cyclase DgcQ
RA	2,028,799	A→G	5.5%	Y190H (TAC→CAC)	yedI ←	conserved inner membrane protein YedI
RA	2,028,801	A→G	5.7%	V189A (GTC→GCC)	yedI ←	conserved inner membrane protein YedI
RA	2,028,804	C→T	5.6%	G188D (GGC→GAC)	yedI ←	conserved inner membrane protein YedI
RA	2,028,806	C→T	5.6%	V187V (GTG→GTA)	yedI ←	conserved inner membrane protein YedI
RA	2,041,159	G→A	5.6%	intergenic (+41/‑216)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,160	T→G	6.7%	intergenic (+42/‑215)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,166	G→T	6.4%	intergenic (+48/‑209)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,167	A→C	5.6%	intergenic (+49/‑208)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,173	C→A	5.4%	intergenic (+55/‑202)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,041,174	T→C	5.4%	intergenic (+56/‑201)	msrQ → / → zinT	periplasmic protein‑L‑methionine sulfoxide reductase heme binding subunit/metal‑binding protein ZinT
RA	2,044,733	T→C	5.4%	intergenic (+109/‑205)	asnT → / → yeeJ	tRNA‑Asn/inverse autotransporter adhesin
RA	2,057,595	T→C	9.5%	intergenic (+21/+432)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,597	T→G	9.3%	intergenic (+23/+430)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,599	T→A	9.3%	intergenic (+25/+428)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,601	C→A	9.2%	intergenic (+27/+426)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,057,603	G→A	9.2%	intergenic (+29/+424)	yeeN → / ← asnW	putative transcriptional regulator YeeN/tRNA‑Asn
RA	2,059,946	T→A	6.1%	intergenic (+20/+18)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,059,948	T→A	6.1%	intergenic (+22/+16)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,059,950	T→A	6.0%	intergenic (+24/+14)	asnU → / ← cbl	tRNA‑Asn/DNA‑binding transcriptional activator Cbl
RA	2,062,354	T→A	5.7%	intergenic (+19/+37)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,355	T→G	5.7%	intergenic (+20/+36)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,356	C→A	5.7%	intergenic (+21/+35)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,062,357	T→A	5.7%	intergenic (+22/+34)	asnV → / ← ldtA	tRNA‑Asn/L,D‑transpeptidase ErfK
RA	2,068,407	A→G	16.0%	intergenic (‑1086/‑228)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,408	T→A	15.9%	intergenic (‑1087/‑227)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,409	G→C	15.9%	intergenic (‑1088/‑226)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,410	T→A	15.3%	intergenic (‑1089/‑225)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,068,411	C→T	14.9%	intergenic (‑1090/‑224)	insH‑6 ← / → yoeA	CP4‑44 prophage; IS5 transposase and trans‑activator/CP4‑44 prophage; TonB‑dependent receptor plug domain‑containing protein YoeA
RA	2,079,004	G→C	11.3%	intergenic (+73/+28)	yoeF → / ← yeeX	CP4‑44 prophage; putative uncharacterized protein YoeF/DUF496 domain‑containing protein YeeX
RA	2,090,122	A→G	7.3%	intergenic (+76/‑70)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,124	C→G	7.3%	intergenic (+78/‑68)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,090,126	C→T	6.9%	intergenic (+80/‑66)	hisL → / → hisG	his operon leader peptide/ATP phosphoribosyltransferase
RA	2,101,131	A→G	5.1%	N46N (AAT→AAC)	gnd ←	6‑phosphogluconate dehydrogenase, decarboxylating
RA	2,103,105	C→A	6.7%	pseudogene (285/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,106	T→A	6.9%	pseudogene (284/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,103,107	T→G	6.8%	pseudogene (283/446 nt)	wbbL ←	interrupted rhamnosyltransferase WbbL
RA	2,115,847	G→T	9.4%	A17E (GCG→GAG)	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,849	C→G	8.6%	S16S (TCG→TCC) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,115,851	A→C	9.8%	S16A (TCG→GCG) ‡	wcaM ←	putative colanic acid biosynthesis protein WcaM
RA	2,123,616	T→C	7.3%	D302G (GAT→GGT)	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,622	T→A	7.1%	H300L (CAC→CTC)	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,625	C→G	7.0%	C299S (TGC→TCC) ‡	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,626	A→C	7.1%	C299G (TGC→GGC) ‡	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,633	G→T	6.5%	G296G (GGC→GGA) ‡	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,634	C→G	7.2%	G296A (GGC→GCC) ‡	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,637	T→A	7.1%	E295V (GAG→GTG)	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,123,643	G→A	5.9%	T293I (ACC→ATC)	cpsB ←	mannose‑1‑phosphate guanylyltransferase
RA	2,132,787	A→C	100%	I204S (ATC→AGC)	wcaA ←	putative colanic acid biosynthesis glycosyl transferase
RA	2,140,400	G→A	8.3%	R405W (CGG→TGG)	asmA ←	putative assembly protein AsmA
RA	2,140,401	T→C	8.3%	P404P (CCA→CCG)	asmA ←	putative assembly protein AsmA
RA	2,142,505	G→C	6.6%	R148R (CGC→CGG)	udk ←	uridine/cytidine kinase
RA	2,151,969	T→A	7.8%	R168S (AGA→AGT)	pphC ←	protein‑serine/threonine phosphatase PphC
RA	2,153,464	T→G	6.2%	intergenic (+10/‑182)	sibA → / → sibB	small RNA SibA/small RNA SibB
RA	2,153,465	C→G	6.2%	intergenic (+11/‑181)	sibA → / → sibB	small RNA SibA/small RNA SibB
RA	2,153,466	C→A	6.1%	intergenic (+12/‑180)	sibA → / → sibB	small RNA SibA/small RNA SibB
RA	2,155,616	G→C	5.4%	Q118H (CAG→CAC)	mdtB →	multidrug efflux pump RND permease subunit MdtB
RA	2,157,564	A→G	6.7%	T768A (ACC→GCC)	mdtB →	multidrug efflux pump RND permease subunit MdtB
RA	2,161,802	G→A	7.5%	A113A (GCG→GCA)	mdtD →	putative multidrug efflux pump MdtD
RA	2,165,143	C→T	7.8%	intergenic (+145/‑46)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,146	T→A	8.1%	intergenic (+148/‑43)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,147	T→A	8.1%	intergenic (+149/‑42)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,165,150	A→G	8.1%	intergenic (+152/‑39)	baeR → / → yegP	DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP
RA	2,173,361	Δ2 bp	100%	pseudogene (917‑918/1358 nt)	gatC ←	galactitol‑specific PTS enzyme IIC component
RA	2,193,624	G→C	8.4%	S182* (TCA→TGA)	mrp ←	P‑loop NTPase family protein
RA	2,225,009	A→G	7.1%	intergenic (‑139/+35)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,225,011	A→G	7.0%	intergenic (‑141/+33)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,225,013	T→A	6.8%	intergenic (‑143/+31)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,225,014	T→A	7.0%	intergenic (‑144/+30)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,225,016	C→T	7.0%	intergenic (‑146/+28)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,225,018	C→T	7.0%	intergenic (‑148/+26)	pbpG ← / ← yohC	peptidoglycan DD‑endopeptidase PbpG/putative inner membrane protein
RA	2,229,322	C→G	12.4%	intergenic (+257/+116)	yohP → / ← dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase
RA	2,229,323	C→G	12.6%	intergenic (+258/+115)	yohP → / ← dusC	putative membrane protein YohP/tRNA‑dihydrouridine(16) synthase
RA	2,247,030	G→A	8.7%	intergenic (‑261/+33)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,031	G→A	8.7%	intergenic (‑262/+32)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,032	T→C	9.1%	intergenic (‑263/+31)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,247,033	T→C	9.1%	intergenic (‑264/+30)	cirA ← / ← lysP	ferric dihyroxybenzoylserine outer membrane transporter/lysine:H(+) symporter
RA	2,262,985	T→C	6.0%	N171D (AAC→GAC)	fruB ←	fructose‑specific PTS multiphosphoryl transfer protein FruB
RA	2,266,047	T→C	6.0%	intergenic (+25/‑198)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,051	T→C	5.9%	intergenic (+29/‑194)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,052	C→T	5.9%	intergenic (+30/‑193)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,053	A→G	6.0%	intergenic (+31/‑192)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,054	G→A	6.0%	intergenic (+32/‑191)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,266,058	G→A	7.0%	intergenic (+36/‑187)	yeiP → / → yeiQ	elongation factor P family protein/putative dehydrogenase, NAD‑dependent
RA	2,267,741	C→G	5.6%	intergenic (+30/‑88)	yeiQ → / → yeiR	putative dehydrogenase, NAD‑dependent/zinc‑binding GTPase YeiR
RA	2,270,602	T→C	10.6%	intergenic (+57/‑124)	mepS → / → pdeN	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase/putative c‑di‑GMP phosphodiesterase PdeN
RA	2,270,605	G→A	10.3%	intergenic (+60/‑121)	mepS → / → pdeN	peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase/putative c‑di‑GMP phosphodiesterase PdeN
RA	2,279,708	A→T	9.9%	L18Q (CTG→CAG)	bcr ←	multidrug efflux pump Bcr
RA	2,279,711	A→T	9.9%	L17Q (CTG→CAG)	bcr ←	multidrug efflux pump Bcr
RA	2,286,139	A→T	6.2%	intergenic (+3/‑72)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,142	T→A	5.8%	intergenic (+6/‑69)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,145	A→T	6.0%	intergenic (+9/‑66)	yejM → / → proL	putative cardiolipin transport protein/tRNA‑Pro
RA	2,286,311	C→G	13.0%	intergenic (+24/+79)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,313	T→A	13.0%	intergenic (+26/+77)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,286,315	C→G	14.1%	intergenic (+28/+75)	proL → / ← yejO	tRNA‑Pro/adhesin‑like autotransporter YejO
RA	2,310,322	A→T	5.2%	V28V (GTT→GTA) ‡	ada ←	DNA‑binding transcriptional dual regulator/DNA repair protein Ada
RA	2,310,323	A→T	5.2%	V28D (GTT→GAT) ‡	ada ←	DNA‑binding transcriptional dual regulator/DNA repair protein Ada
RA	2,310,326	A→T	5.5%	F27Y (TTC→TAC) ‡	ada ←	DNA‑binding transcriptional dual regulator/DNA repair protein Ada
RA	2,310,327	A→T	5.5%	F27I (TTC→ATC) ‡	ada ←	DNA‑binding transcriptional dual regulator/DNA repair protein Ada
RA	2,319,235	A→T	6.2%	Y214* (TAT→TAA) ‡	rcsC ←	sensory histidine kinase RcsC
RA	2,319,237	A→T	6.8%	Y214N (TAT→AAT) ‡	rcsC ←	sensory histidine kinase RcsC
RA	2,319,239	A→T	5.8%	V213D (GTT→GAT)	rcsC ←	sensory histidine kinase RcsC
RA	2,323,275	T→A	6.6%	intergenic (+24/‑172)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,280	A→G	6.9%	intergenic (+29/‑167)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,283	G→C	6.7%	intergenic (+32/‑164)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,286	C→T	7.0%	intergenic (+35/‑161)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,323,291	T→A	6.6%	intergenic (+40/‑156)	atoC → / → atoD	DNA‑binding transcriptional activator/ornithine decarboxylase inhibitor AtoC/acetyl‑CoA:acetoacetyl‑CoA transferase subunit alpha
RA	2,325,037:1	+T	11.9%	coding (282/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,325,042	Δ1 bp	10.9%	coding (287/1323 nt)	atoE →	short chain fatty acid transporter
RA	2,333,595	G→A	5.2%	pseudogene (808/4605 nt)	yfaS ←	putative macroglobulin family protein, N‑terminal fragment
RA	2,340,372	A→G	8.8%	intergenic (+83/+45)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,373	A→C	8.9%	intergenic (+84/+44)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,379	T→A	9.3%	intergenic (+90/+38)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,380	T→A	9.2%	intergenic (+91/+37)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,386	G→T	10.5%	intergenic (+97/+31)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,340,387	C→T	9.7%	intergenic (+98/+30)	ubiG → / ← yfaL	bifunctional 3‑demethylubiquinone‑8 3‑O‑methyltransferase and 2‑octaprenyl‑6‑hydroxyphenol methylase/putative autotransporter adhesin YfaL
RA	2,342,193	C→T	5.3%	E659E (GAG→GAA)	yfaL ←	putative autotransporter adhesin YfaL
RA	2,343,645	A→G	6.6%	I175I (ATT→ATC)	yfaL ←	putative autotransporter adhesin YfaL
RA	2,348,789	C→A	5.3%	intergenic (+21/+33)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,348,790	A→G	5.5%	intergenic (+22/+32)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,348,798	T→A	5.4%	intergenic (+30/+24)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,348,803	C→T	5.3%	intergenic (+35/+19)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,348,804	T→G	5.4%	intergenic (+36/+18)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,348,812:1	+A	5.6%	intergenic (+44/+10)	yfaE → / ← inaA	ferredoxin‑like diferric‑tyrosyl radical cofactor maintenance protein YfaE/putative lipopolysaccharide kinase InaA
RA	2,357,027	C→T	8.2%	L42L (CTG→TTG)	rpnE →	inactive recombination‑promoting nuclease‑like protein RpnE
RA	2,362,404	G→T	6.6%	intergenic (‑193/+27)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,405	C→T	6.8%	intergenic (‑194/+26)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,407	G→C	6.9%	intergenic (‑196/+24)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,409	A→G	6.9%	intergenic (‑198/+22)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,362,410	A→C	6.9%	intergenic (‑199/+21)	yfaX ← / ← yfaY	putative DNA‑binding transcriptional regulator YfaX/IPR008135 CinA family protein YfaY
RA	2,364,995	T→G	5.9%	intergenic (+16/+23)	nudI → / ← ais	pyrimidine deoxynucleotide diphosphatase NudI/putative lipopolysaccharide core heptose(II)‑phosphate phosphatase
RA	2,367,605	G→A	6.5%	E179K (GAA→AAA)	arnC →	undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase
RA	2,376,933	C→A	6.4%	L220L (CTG→CTT) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,935	G→A	6.2%	L220L (CTG→TTG) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,942	C→G	6.6%	A217A (GCG→GCC)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,946	A→T	6.2%	L216Q (CTG→CAG)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,949	G→C	6.3%	A215G (GCC→GGC)	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,957	T→C	6.2%	K212K (AAA→AAG) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,376,959	T→G	6.2%	K212Q (AAA→CAA) ‡	menH ←	2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase
RA	2,390,012	Δ1 bp	5.6%	intergenic (+48/+36)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,390,016:1	+C	5.6%	intergenic (+52/+32)	yfbP → / ← nuoN	uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N
RA	2,407,905:1	+C	7.8%	coding (345/1218 nt)	alaA →	glutamate‑‑pyruvate aminotransferase AlaA
RA	2,414,689	C→G	5.9%	intergenic (+17/‑58)	ackA → / → pta	acetate kinase/phosphate acetyltransferase
RA	2,428,697	A→G	9.1%	intergenic (‑71/+24)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,428,699	A→T	9.1%	intergenic (‑73/+22)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,428,701	C→T	9.4%	intergenic (‑75/+20)	ubiX ← / ← purF	flavin prenyltransferase/amidophosphoribosyltransferase
RA	2,438,883	C→T	8.1%	R312C (CGT→TGT)	flk →	putative flagella assembly protein
RA	2,440,295	A→T	5.3%	intergenic (‑175/+90)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,296	T→G	5.3%	intergenic (‑176/+89)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,297	C→A	5.5%	intergenic (‑177/+88)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,440,298	A→T	5.5%	intergenic (‑178/+87)	yfcJ ← / ← fabB	putative transporter YfcJ/beta‑ketoacyl‑[acyl carrier protein] synthase I
RA	2,441,661	C→A	9.0%	intergenic (‑56/‑103)	fabB ← / → mnmC	beta‑ketoacyl‑[acyl carrier protein] synthase I/fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
RA	2,449,200	G→A	5.1%	intergenic (+43/+28)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,449,201	A→T	5.5%	intergenic (+44/+27)	smrB → / ← yfcO	putative endonuclease SmrB/DUF2544 domain‑containing protein YfcO
RA	2,455,141	T→G	7.4%	D169A (GAT→GCT)	yfcV ←	putative fimbrial protein YfcV
RA	2,455,143	A→T	7.4%	A168A (GCT→GCA) ‡	yfcV ←	putative fimbrial protein YfcV
RA	2,455,145	C→A	6.3%	A168S (GCT→TCT) ‡	yfcV ←	putative fimbrial protein YfcV
RA	2,456,854	Δ1 bp	6.8%	intergenic (‑42/+161)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,456,859	A→G	6.8%	intergenic (‑47/+156)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,456,860	A→T	6.8%	intergenic (‑48/+155)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,456,861	A→T	6.9%	intergenic (‑49/+154)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,456,862	C→T	6.8%	intergenic (‑50/+153)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,456,866:1	+T	7.4%	intergenic (‑54/+149)	sixA ← / ← fadJ	phosphohistidine phosphatase/3‑hydroxyacyl‑CoA dehydrogenase FadJ
RA	2,460,614	C→T	9.5%	intergenic (‑145/+36)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,618	C→T	9.4%	intergenic (‑149/+32)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,619	A→T	9.0%	intergenic (‑150/+31)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,620	A→G	9.4%	intergenic (‑151/+30)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,460,624	A→G	9.6%	intergenic (‑155/+26)	fadI ← / ← yfcZ	3‑ketoacyl‑CoA thiolase FadI/DUF406 domain‑containing protein YfcZ
RA	2,470,480	A→T	9.8%	intergenic (+18/+597)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,481	T→G	9.9%	intergenic (+19/+596)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,482	C→A	9.4%	intergenic (+20/+595)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,470,483	A→T	9.7%	intergenic (+21/+594)	yfdI → / ← yfdK	CPS‑53 (KpLE1) prophage; serotype specific glucosyl transferase/CPS‑53 (KpLE1) prophage; putative tail fiber assembly protein YfdK
RA	2,477,882	T→G	6.1%	L12L (CTT→CTG)	dsdX →	D‑serine transporter
RA	2,477,885	C→A	6.0%	I13I (ATC→ATA)	dsdX →	D‑serine transporter
RA	2,477,890	T→G	5.7%	I15S (ATC→AGC)	dsdX →	D‑serine transporter
RA	2,507,110	G→C	10.8%	A262G (GCA→GGA)	fryC ←	putative PTS enzyme IIC component FryC
RA	2,508,433	Δ1 bp	7.5%	intergenic (‑191/+28)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,508,436	T→A	7.2%	intergenic (‑194/+25)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,508,438:1	+T	7.3%	intergenic (‑196/+23)	fryB ← / ← glk	putative PTS enzyme IIB component FryB/glucokinase
RA	2,511,283	G→C	5.1%	D95H (GAC→CAC)	ypeC →	DUF2502 domain‑containing protein YpeC
RA	2,512,728	C→A	7.7%	intergenic (‑22/‑314)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,729	T→A	7.6%	intergenic (‑23/‑313)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,730	T→A	7.5%	intergenic (‑24/‑312)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,512,731	T→G	7.6%	intergenic (‑25/‑311)	mntH ← / → nupC	Mn(2(+))/Fe(2(+)): H(+) symporter MntH/nucleoside:H(+) symporter NupC
RA	2,524,679	C→T	5.4%	G67E (GGG→GAG)	xapA ←	xanthosine phosphorylase
RA	2,533,415	T→A	9.9%	intergenic (+35/‑349)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,416	T→A	9.8%	intergenic (+36/‑348)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,417	T→A	9.8%	intergenic (+37/‑347)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,533,418	T→A	9.9%	intergenic (+38/‑346)	cysK → / → ptsH	O‑acetylserine sulfhydrylase A/phosphocarrier protein HPr
RA	2,537,076	C→G	10.6%	L54L (CTG→CTC)	pdxK ←	pyridoxal kinase I
RA	2,542,928	C→T	12.6%	A201T (GCG→ACG)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,542,930	C→G	12.3%	G200A (GGC→GCC)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,542,932	A→G	12.5%	R199R (CGT→CGC)	cysP ←	thiosulfate/sulfate ABC transporter periplasmic binding protein CysP
RA	2,549,601	T→G	7.8%	intergenic (+195/+45)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,608	T→C	5.9%	intergenic (+202/+38)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,609	G→A	5.9%	intergenic (+203/+37)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,549,616	C→A	6.9%	intergenic (+210/+30)	yfeW → / ← yfeX	penicillin binding protein 4B/porphyrinogen peroxidase
RA	2,561,012	A→T	14.3%	intergenic (+114/‑356)	yffL → / → yffM	CPZ‑55 prophage; uncharacterized protein YffL/CPZ‑55 prophage; uncharacterized protein YffM
RA	2,566,490	C→T	6.6%	G132D (GGT→GAT)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,566,493	G→C	6.7%	A131G (GCC→GGC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,566,496	A→G	6.6%	I130T (ATC→ACC)	eutA ←	reactivating factor for ethanolamine ammonia‑lyase EutBC
RA	2,577,647	T→C	5.5%	D244G (GAT→GGT)	maeB ←	malate dehydrogenase
RA	2,589,122	G→A	10.7%	G510S (GGC→AGC)	acrD →	multidrug efflux pump RND permease AcrD
RA	2,589,125	T→C	11.1%	F511L (TTT→CTT)	acrD →	multidrug efflux pump RND permease AcrD
RA	2,590,767	T→C	5.9%	intergenic (+59/+40)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,590,771	C→G	5.9%	intergenic (+63/+36)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,590,775	G→A	5.9%	intergenic (+67/+32)	acrD → / ← ypfM	multidrug efflux pump RND permease AcrD/uncharacterized protein YpfM
RA	2,592,989	A→G	8.2%	intergenic (+27/+83)	ypfN → / ← ypfH	UPF0370 protein YpfN/esterase YpfH
RA	2,592,990	A→C	8.2%	intergenic (+28/+82)	ypfN → / ← ypfH	UPF0370 protein YpfN/esterase YpfH
RA	2,601,452	C→A	7.1%	G84G (GGC→GGA)	hyfA →	hydrogenase 4 component A
RA	2,612,823	T→C	8.3%	A308A (GCT→GCC)	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,830	G→A	8.1%	V311I (GTT→ATT) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,831	T→A	8.1%	V311D (GTT→GAT) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,832	T→C	8.3%	V311V (GTT→GTC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,839	G→A	7.7%	A314T (GCC→ACC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,612,840	C→G	7.7%	A314G (GCC→GGC) ‡	hyfR →	DNA‑binding transcriptional activator HyfR
RA	2,617,859	Δ1 bp	5.1%	coding (282/360 nt)	yfgD →	putative oxidoreductase YfgD
RA	2,623,776	G→A	8.1%	E245K (GAG→AAG)	ppk →	polyphosphate kinase
RA	2,632,588	A→T	5.6%	intergenic (‑53/+16)	guaA ← / ← guaB	GMP synthetase/inosine 5'‑monophosphate dehydrogenase
RA	2,637,234	C→A	10.1%	K41N (AAG→AAT) ‡	der ←	50S ribosomal subunit stability factor
RA	2,637,235	T→G	9.9%	K41T (AAG→ACG) ‡	der ←	50S ribosomal subunit stability factor
RA	2,638,584	A→T	9.6%	F23L (TTT→TTA)	bamB ←	outer membrane protein assembly factor BamB
RA	2,648,446	Δ1 bp	10.2%	coding (3842/4962 nt)	yfhM ←	alpha2‑macroglobulin
RA	2,648,452	C→A	11.8%	G1279V (GGT→GTT)	yfhM ←	alpha2‑macroglobulin
RA	2,648,455	C→G	11.9%	R1278P (CGG→CCG)	yfhM ←	alpha2‑macroglobulin
RA	2,648,458	T→G	12.4%	N1277T (AAC→ACC)	yfhM ←	alpha2‑macroglobulin
RA	2,648,463:1	+A	10.5%	coding (3825/4962 nt)	yfhM ←	alpha2‑macroglobulin
RA	2,661,482	G→C	9.3%	P17R (CCG→CGG)	iscS ←	cysteine desulfurase
RA	2,661,486	C→G	8.1%	D16H (GAC→CAC)	iscS ←	cysteine desulfurase
RA	2,661,487	C→G	9.3%	V15V (GTG→GTC)	iscS ←	cysteine desulfurase
RA	2,661,491	G→C	8.0%	P14R (CCG→CGG)	iscS ←	cysteine desulfurase
RA	2,684,192	A→G	8.7%	intergenic (+136/+62)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,193	A→C	8.8%	intergenic (+137/+61)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,199	T→G	10.0%	intergenic (+143/+55)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,200	C→A	10.0%	intergenic (+144/+54)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,206	G→T	7.8%	intergenic (+150/+48)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,684,207	C→T	7.8%	intergenic (+151/+47)	yphH → / ← glyA	putative DNA‑binding transcriptional regulator, NAGC‑like/serine hydroxymethyltransferase
RA	2,687,210	C→A	9.8%	D67Y (GAC→TAC)	glnB ←	nitrogen regulatory protein PII‑1
RA	2,687,212	G→C	9.1%	P66R (CCG→CGG)	glnB ←	nitrogen regulatory protein PII‑1
RA	2,687,214	T→G	8.9%	V65V (GTA→GTC)	glnB ←	nitrogen regulatory protein PII‑1
RA	2,691,169	A→T	9.7%	noncoding (172/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,171	T→A	9.7%	noncoding (170/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,691,173	A→T	9.7%	noncoding (168/184 nt)	glmY ←	small regulatory RNA GlmY
RA	2,704,878	G→T	10.8%	Y144* (TAC→TAA) ‡	lepB ←	signal peptidase I
RA	2,704,879	T→A	9.5%	Y144F (TAC→TTC) ‡	lepB ←	signal peptidase I
RA	2,704,880	A→C	9.7%	Y144D (TAC→GAC) ‡	lepB ←	signal peptidase I
RA	2,707,320	A→T	12.6%	intergenic (‑196/+2)	lepA ← / ← rseC	elongation factor 4/protein RseC
RA	2,707,321	A→T	12.6%	intergenic (‑197/+1)	lepA ← / ← rseC	elongation factor 4/protein RseC
RA	2,707,906	G→A	5.2%	T283T (ACC→ACT)	rseB ←	anti‑sigma factor stabilizing protein RseB
RA	2,712,128	C→G	8.3%	A213P (GCG→CCG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,130	T→A	8.3%	Q212L (CAG→CTG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,712,133	G→C	8.4%	P211R (CCG→CGG)	yfiC ←	tRNA m(6)A37 methyltransferase
RA	2,714,415	C→T	5.5%	intergenic (+185/+24)	srmB → / ← yfiE	ATP‑dependent RNA helicase SrmB/putative LysR‑type DNA‑binding transcriptional regulator YfiE
RA	2,725,453	T→A	5.3%	L98F (TTA→TTT)	kgtP ←	alpha‑ketoglutarate:H(+) symporter
RA	2,731,069	C→A	5.5%	noncoding (89/1542 nt)	rrsG ←	16S ribosomal RNA
RA	2,753,631	A→T	6.2%	A9A (GCA→GCT)	bamE →	outer membrane protein assembly factor BamE
RA	2,762,221	G→T	5.9%	I440I (ATC→ATA) ‡	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,762,222	A→C	5.7%	I440S (ATC→AGC) ‡	abpB ←	CP4‑57 prophage; putative helicase YfjK
RA	2,768,609	T→C	8.2%	intergenic (+36/‑56)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,614	A→C	8.1%	intergenic (+41/‑51)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,615	G→T	8.0%	intergenic (+42/‑50)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,768,620	G→A	8.1%	intergenic (+47/‑45)	yfjP → / → yfjQ	CP4‑57 prophage; putative GTP‑binding protein YfjP/CP4‑57 prophage; protein YfjQ
RA	2,792,808	T→A	6.8%	I25N (ATT→AAT)	gabT →	4‑aminobutyrate aminotransferase GabT
RA	2,801,056	A→T	9.8%	N31I (AAT→ATT)	nrdI →	dimanganese‑tyrosyl radical cofactor maintenance flavodoxin NrdI
RA	2,807,091	T→C	7.7%	intergenic (+17/‑41)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,807,093	A→T	8.4%	intergenic (+19/‑39)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,807,095	G→A	7.7%	intergenic (+21/‑37)	proW → / → proX	glycine betaine ABC transporter membrane subunit ProW/glycine betaine ABC transporter periplasmic binding protein ProX
RA	2,814,174	T→A	9.9%	intergenic (+20/+44)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,814,175	T→A	9.5%	intergenic (+21/+43)	emrB → / ← luxS	multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase
RA	2,823,838	C→A	9.5%	intergenic (‑69/+11)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,823,839	T→G	9.1%	intergenic (‑70/+10)	recA ← / ← pncC	DNA recombination/repair protein RecA/NMN aminohydrolase
RA	2,838,222	A→T	8.0%	intergenic (‑117/+32)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,838,231	A→T	8.3%	intergenic (‑126/+23)	hydN ← / ← ascG	putative electron transport protein HydN/DNA‑binding transcriptional repressor AscG
RA	2,850,816	Δ1 bp	6.2%	coding (170/351 nt)	hypA →	hydrogenase 3 nickel incorporation protein HypA
RA	2,856,832	T→A	6.9%	intergenic (‑26/‑261)	ygbA ← / → mutS	protein YgbA/DNA mismatch repair protein MutS
RA	2,856,834	T→A	7.1%	intergenic (‑28/‑259)	ygbA ← / → mutS	protein YgbA/DNA mismatch repair protein MutS
RA	2,856,836	T→A	6.5%	intergenic (‑30/‑257)	ygbA ← / → mutS	protein YgbA/DNA mismatch repair protein MutS
RA	2,856,838	T→A	7.1%	intergenic (‑32/‑255)	ygbA ← / → mutS	protein YgbA/DNA mismatch repair protein MutS
RA	2,858,687	T→A	6.9%	F532Y (TTC→TAC)	mutS →	DNA mismatch repair protein MutS
RA	2,866,488	G→C	6.0%	intergenic (+23/+71)	ygbN → / ← rpoS	putative transporter YgbN/RNA polymerase, sigma S (sigma 38) factor
RA	2,877,557	G→A	7.8%	R326H (CGC→CAC)	iap →	alkaline phosphatase isozyme conversion protein
RA	2,877,559	T→G	7.6%	C327G (TGC→GGC)	iap →	alkaline phosphatase isozyme conversion protein
RA	2,877,562	C→A	7.7%	R328S (CGT→AGT) ‡	iap →	alkaline phosphatase isozyme conversion protein
RA	2,877,564	T→C	7.7%	R328R (CGT→CGC) ‡	iap →	alkaline phosphatase isozyme conversion protein
RA	2,892,550	A→G	7.7%	T113A (ACC→GCC) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,892,551	C→G	7.8%	T113S (ACC→AGC) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,892,552	C→T	7.7%	T113T (ACC→ACT) ‡	queD →	6‑carboxy‑5,6,7,8‑tetrahydropterin synthase
RA	2,906,608	G→C	6.1%	intergenic (+25/+35)	ygcG → / ← eno	protein YgcG/enolase
RA	2,906,609	G→C	7.2%	intergenic (+26/+34)	ygcG → / ← eno	protein YgcG/enolase
RA	2,911,007	G→A	7.3%	R29C (CGT→TGT)	mazF ←	endoribonuclease toxin MazF
RA	2,911,008	A→T	5.9%	H28Q (CAT→CAA) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,911,009	T→C	5.8%	H28R (CAT→CGT) ‡	mazF ←	endoribonuclease toxin MazF
RA	2,923,969	C→G	18.2%	E49Q (GAG→CAG)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,923,970	C→G	18.2%	L48L (CTG→CTC)	yqcC ←	DUF446 domain‑containing protein YqcC
RA	2,925,407	T→A	6.4%	D20E (GAT→GAA)	queF →	7‑cyano‑7‑deazaguanine reductase
RA	2,937,545	A→C	5.2%	K26N (AAA→AAC)	fucK →	L‑fuculokinase
RA	2,937,547	T→A	5.4%	I27N (ATT→AAT)	fucK →	L‑fuculokinase
RA	2,939,331	A→G	11.4%	intergenic (+21/‑37)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,333	G→C	11.3%	intergenic (+23/‑35)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,939,335	C→T	11.7%	intergenic (+25/‑33)	fucU → / → fucR	L‑fucose mutarotase/DNA‑binding transcriptional activator FucR
RA	2,945,978	C→A	5.0%	intergenic (‑136/+103)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,945,984	G→T	5.3%	intergenic (‑142/+97)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,945,985	C→T	5.3%	intergenic (‑143/+96)	tcdA ← / ← mltA	tRNA threonylcarbamoyladenosine dehydratase/membrane‑bound lytic murein transglycosylase A
RA	2,947,465	Δ1 bp	31.2%	intergenic (+2/‑32)	metZ → / → metW	tRNA‑Met/tRNA‑Met
RA	2,947,467	A→C	31.5%	intergenic (+4/‑30)	metZ → / → metW	tRNA‑Met/tRNA‑Met
RA	2,957,102	A→C	7.9%	S595A (TCC→GCC)	ptrA ←	protease 3
RA	2,957,104	A→T	7.9%	F594Y (TTT→TAT)	ptrA ←	protease 3
RA	2,957,107	C→G	7.8%	S593T (AGT→ACT)	ptrA ←	protease 3
RA	2,957,110	A→T	7.7%	I592K (ATA→AAA)	ptrA ←	protease 3
RA	2,957,112	G→T	8.3%	G591G (GGC→GGA)	ptrA ←	protease 3
RA	2,967,771	C→A	6.9%	E222* (GAG→TAG)	ptsP ←	phosphoenolpyruvate‑protein phosphotransferase PtsP
RA	2,971,146	T→C	6.6%	intergenic (+13/‑125)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,151	T→C	6.4%	intergenic (+18/‑120)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,154	G→A	6.5%	intergenic (+21/‑117)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,971,159	G→A	6.4%	intergenic (+26/‑112)	ygdQ → / → ygdR	UPF0053 inner membrane protein YgdQ/DUF903 domain‑containing lipoprotein YgdR
RA	2,972,652	A→T	5.4%	intergenic (+15/+17)	tas → / ← lplT	putative NADP(H)‑dependent aldo‑keto reductase Tas/lysophospholipid transporter
RA	2,972,653	A→T	5.4%	intergenic (+16/+16)	tas → / ← lplT	putative NADP(H)‑dependent aldo‑keto reductase Tas/lysophospholipid transporter
RA	2,976,320	T→G	7.2%	noncoding (66/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,976,321	C→A	9.8%	noncoding (65/82 nt)	omrB ←	small regulatory RNA OmrB
RA	2,980,742	A→G	9.8%	intergenic (‑107/+22)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,744	A→T	9.7%	intergenic (‑109/+20)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,980,746	C→T	9.7%	intergenic (‑111/+18)	ygeA ← / ← araE	amino acid racemase/arabinose:H(+) symporter
RA	2,993,889	T→A	8.2%	intergenic (+33/‑50)	ygeI → / → pbl	protein YgeI/transglycosylase domain‑containing protein Pbl
RA	2,993,896	T→A	8.6%	intergenic (+40/‑43)	ygeI → / → pbl	protein YgeI/transglycosylase domain‑containing protein Pbl
RA	3,007,368	C→G	6.1%	A369A (GCC→GCG)	ygeW →	putative carbamoyltransferase YgeW
RA	3,018,454	G→A	5.9%	V799M (GTG→ATG)	ygfK →	putative oxidoreductase, Fe‑S subunit
RA	3,026,424	C→T	10.2%	A220V (GCG→GTG)	guaD →	guanine deaminase
RA	3,038,858	G→C	5.0%	P296A (CCG→GCG)	xerD ←	site‑specific recombinase
RA	3,041,398	T→G	100%	L29R (CTT→CGT)	ygfZ →	folate‑binding protein
RA	3,044,327	C→G	6.0%	S222R (AGC→AGG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,044,330	C→G	6.3%	A223A (GCC→GCG)	bglA →	6‑phospho‑beta‑glucosidase A
RA	3,050,713	A→T	7.1%	intergenic (‑46/‑245)	gcvT ← / → yqfI	aminomethyltransferase/protein YqfI
RA	3,050,715	T→A	7.0%	intergenic (‑48/‑243)	gcvT ← / → yqfI	aminomethyltransferase/protein YqfI
RA	3,050,724	C→T	7.0%	intergenic (‑57/‑234)	gcvT ← / → yqfI	aminomethyltransferase/protein YqfI
RA	3,066,309	T→A	5.5%	I289F (ATT→TTT)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI
RA	3,067,320	A→T	15.1%	intergenic (‑147/+20)	ygfI ← / ← yggE	putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE
RA	3,067,323	A→T	15.5%	intergenic (‑150/+17)	ygfI ← / ← yggE	putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE
RA	3,067,560	T→C	5.9%	N174S (AAC→AGC)	yggE ←	uncharacterized protein YggE
RA	3,073,445	Δ1 bp	6.9%	coding (247/1020 nt)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,073,455:1	+C	6.8%	coding (237/1020 nt)	epd ←	D‑erythrose‑4‑phosphate dehydrogenase
RA	3,078,186	C→T	8.7%	G225D (GGC→GAC)	cmtA ←	mannitol‑specific PTS enzyme IICB component CmtA
RA	3,078,191	A→G	8.7%	G223G (GGT→GGC)	cmtA ←	mannitol‑specific PTS enzyme IICB component CmtA
RA	3,100,874	A→T	6.1%	intergenic (‑146/+30)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,876	A→C	6.1%	intergenic (‑148/+28)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,877	A→T	6.1%	intergenic (‑149/+27)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,878	G→T	6.7%	intergenic (‑150/+26)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,100,880	A→T	6.2%	intergenic (‑152/+24)	ansB ← / ← yggN	L‑asparaginase 2/putative EcfF
RA	3,105,532	C→G	11.1%	intergenic (+20/‑182)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside:H(+) symporter NupG
RA	3,105,533	G→C	10.9%	intergenic (+21/‑181)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside:H(+) symporter NupG
RA	3,105,536	G→C	10.9%	intergenic (+24/‑178)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside:H(+) symporter NupG
RA	3,105,537	C→G	10.9%	intergenic (+25/‑177)	mltC → / → nupG	membrane‑bound lytic murein transglycosylase C/nucleoside:H(+) symporter NupG
RA	3,107,875	A→G	6.3%	I427I (ATT→ATC) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,876	A→C	6.3%	I427S (ATT→AGT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,879	G→T	6.3%	A426D (GCT→GAT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,107,880	C→T	6.4%	A426T (GCT→ACT) ‡	speC ←	ornithine decarboxylase, biosynthetic
RA	3,140,859	T→G	6.4%	E143A (GAG→GCG)	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,861	A→T	6.7%	L142L (CTT→CTA) ‡	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,862	A→T	6.7%	L142H (CTT→CAT) ‡	hybD ←	putative hydrogenase 2 maturation protease
RA	3,140,864	C→A	6.8%	A141A (GCG→GCT)	hybD ←	putative hydrogenase 2 maturation protease
RA	3,146,761	T→G	5.5%	intergenic (‑24/+95)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,146,762	G→A	5.5%	intergenic (‑25/+94)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,146,763	T→C	5.5%	intergenic (‑26/+93)	yghW ← / ← yghX	DUF2623 domain‑containing protein YghW/putative hydrolase fragment
RA	3,155,227	C→A	11.5%	intergenic (‑9/‑128)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,228	A→G	11.5%	intergenic (‑10/‑127)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,229	C→T	11.5%	intergenic (‑11/‑126)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,155,230	T→G	11.4%	intergenic (‑12/‑125)	yqhC ← / → yqhD	DNA‑binding transcriptional activator YqhC/NADPH‑dependent aldehyde reductase YqhD
RA	3,159,394	A→T	6.3%	W585R (TGG→AGG)	ygiQ ←	radical SAM superfamily protein YgiQ
RA	3,171,852	C→T	14.5%	intergenic (+19/+27)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,857	A→T	14.5%	intergenic (+24/+22)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,858	A→T	14.4%	intergenic (+25/+21)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,171,863	A→G	14.3%	intergenic (+30/+16)	qseC → / ← ygiZ	sensory histidine kinase QseC/conserved inner membrane protein YgiZ
RA	3,173,476	C→T	7.9%	intergenic (+20/+28)	ygiN → / ← parE	putative quinol monooxygenase YgiN/DNA topoisomerase IV subunit B
RA	3,173,479	T→G	8.0%	intergenic (+23/+25)	ygiN → / ← parE	putative quinol monooxygenase YgiN/DNA topoisomerase IV subunit B
RA	3,173,480	C→G	7.9%	intergenic (+24/+24)	ygiN → / ← parE	putative quinol monooxygenase YgiN/DNA topoisomerase IV subunit B
RA	3,173,481	C→A	7.9%	intergenic (+25/+23)	ygiN → / ← parE	putative quinol monooxygenase YgiN/DNA topoisomerase IV subunit B
RA	3,173,484	A→G	7.9%	intergenic (+28/+20)	ygiN → / ← parE	putative quinol monooxygenase YgiN/DNA topoisomerase IV subunit B
RA	3,176,394	A→T	10.4%	L147Q (CTG→CAG)	cpdA ←	cAMP phosphodiesterase
RA	3,176,429	C→T	8.0%	P135P (CCG→CCA)	cpdA ←	cAMP phosphodiesterase
RA	3,180,505	G→T	8.7%	E29* (GAG→TAG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,506	A→C	8.6%	E29A (GAG→GCG) ‡	ygiC →	putative enzyme with ATPase activity
RA	3,180,513:1	+A	8.8%	coding (93/1161 nt)	ygiC →	putative enzyme with ATPase activity
RA	3,181,298	A→T	7.1%	H293L (CAT→CTT)	ygiC →	putative enzyme with ATPase activity
RA	3,183,345:1	+T	8.3%	intergenic (+22/+36)	zupT → / ← yqiD	heavy metal divalent cation transporter ZupT/protein YqiD
RA	3,183,350	Δ1 bp	8.3%	intergenic (+27/+31)	zupT → / ← yqiD	heavy metal divalent cation transporter ZupT/protein YqiD
RA	3,192,129	T→A	6.8%	intergenic (‑190/‑79)	glgS ← / → yqiJ	surface composition regulator/putative inner membrane protein
RA	3,192,132	T→A	6.8%	intergenic (‑193/‑76)	glgS ← / → yqiJ	surface composition regulator/putative inner membrane protein
RA	3,202,678	C→G	7.4%	P263R (CCG→CGG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,685	A→G	10.0%	E265E (GAA→GAG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,686	C→T	10.0%	L266F (CTC→TTC)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,202,693	C→G	10.1%	P268R (CCG→CGG)	cca →	fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
RA	3,210,435	Δ1 bp	6.0%	coding (109/1014 nt)	tsaD ←	N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA	3,210,439	C→A	7.4%	L35F (TTG→TTT)	tsaD ←	N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA	3,210,444	T→G	6.2%	K34Q (AAA→CAA)	tsaD ←	N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA	3,210,447:1	+G	6.5%	coding (97/1014 nt)	tsaD ←	N(6)‑L‑threonylcarbamoyladenine synthase, TsaD subunit
RA	3,233,708	A→G	7.6%	intergenic (+25/+20)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,233,709	A→T	7.4%	intergenic (+26/+19)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,233,710	C→T	7.6%	intergenic (+27/+18)	fadH → / ← higA	2,4‑dienoyl‑CoA reductase/antitoxin/DNA‑binding transcriptional repressor HigA
RA	3,234,506	G→A	6.1%	intergenic (‑51/+233)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,507	A→T	6.1%	intergenic (‑52/+232)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,234,508	T→C	6.0%	intergenic (‑53/+231)	higB ← / ← rlmG	ribosome‑dependent mRNA interferase toxin HigB/23S rRNA m(2)G1835 methyltransferase
RA	3,256,441	T→G	9.1%	T71P (ACG→CCG)	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,442	G→C	9.2%	G70G (GGC→GGG) ‡	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,443	C→A	8.3%	G70V (GGC→GTC) ‡	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,256,450	C→T	9.1%	V68I (GTT→ATT)	cyuA ←	putative L‑cysteine desulfidase CyuA
RA	3,263,500	G→A	7.4%	P54L (CCG→CTG) ‡	tdcD ←	propionate kinase
RA	3,263,501	G→C	6.6%	P54A (CCG→GCG) ‡	tdcD ←	propionate kinase
RA	3,263,502	T→C	7.4%	A53A (GCA→GCG)	tdcD ←	propionate kinase
RA	3,270,030	T→C	16.5%	intergenic (+428/+186)	yhaC → / ← rnpB	uncharacterized protein YhaC/RNase P catalytic RNA component
RA	3,288,032	C→A	6.6%	intergenic (+22/‑58)	yraH → / → yraI	putative fimbrial protein YraH/putative fimbrial chaperone YraI
RA	3,288,033	T→G	6.7%	intergenic (+23/‑57)	yraH → / → yraI	putative fimbrial protein YraH/putative fimbrial chaperone YraI
RA	3,291,110	A→T	6.6%	K766I (AAA→ATA)	yraJ →	putative fimbrial usher protein YraJ
RA	3,308,619:1	+G	11.1%	coding (306/885 nt)	nlpI ←	lipoprotein NlpI
RA	3,308,625	A→T	11.5%	N100K (AAT→AAA) ‡	nlpI ←	lipoprotein NlpI
RA	3,308,627	T→C	11.5%	N100D (AAT→GAT) ‡	nlpI ←	lipoprotein NlpI
RA	3,308,628	G→A	12.1%	F99F (TTC→TTT) ‡	nlpI ←	lipoprotein NlpI
RA	3,308,630	A→T	12.3%	F99I (TTC→ATC) ‡	nlpI ←	lipoprotein NlpI
RA	3,308,636	Δ1 bp	11.4%	coding (289/885 nt)	nlpI ←	lipoprotein NlpI
RA	3,322,698	A→G	7.4%	intergenic (‑193/+35)	secG ← / ← glmM	Sec translocon subunit SecG/phosphoglucosamine mutase
RA	3,322,700	A→G	7.7%	intergenic (‑195/+33)	secG ← / ← glmM	Sec translocon subunit SecG/phosphoglucosamine mutase
RA	3,322,703	C→T	8.1%	intergenic (‑198/+30)	secG ← / ← glmM	Sec translocon subunit SecG/phosphoglucosamine mutase
RA	3,322,705	C→T	8.0%	intergenic (‑200/+28)	secG ← / ← glmM	Sec translocon subunit SecG/phosphoglucosamine mutase
RA	3,323,445	T→C	5.9%	N209S (AAC→AGC)	glmM ←	phosphoglucosamine mutase
RA	3,323,490	A→C	8.1%	L194R (CTG→CGG)	glmM ←	phosphoglucosamine mutase
RA	3,323,492	C→A	8.1%	V193V (GTG→GTT)	glmM ←	phosphoglucosamine mutase
RA	3,323,497	T→G	8.1%	N192H (AAC→CAC)	glmM ←	phosphoglucosamine mutase
RA	3,323,499	G→T	7.6%	P191Q (CCG→CAG)	glmM ←	phosphoglucosamine mutase
RA	3,328,212	Δ1 bp	5.5%	intergenic (+129/+27)	yhbY → / ← greA	ribosome assembly factor YhbY/transcription elongation factor GreA
RA	3,332,822	G→A	8.2%	intergenic (‑87/+40)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,332,823	T→C	8.2%	intergenic (‑88/+39)	yhbE ← / ← rpmA	inner membrane protein YhbE/50S ribosomal subunit protein L27
RA	3,338,889	G→A	6.0%	I120I (ATC→ATT)	mlaE ←	intermembrane phospholipid transport system, integral membrane subunit MlaE
RA	3,360,643	T→A	7.7%	intergenic (+27/‑533)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,644	G→C	7.7%	intergenic (+28/‑532)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,360,645	T→A	7.5%	intergenic (+29/‑531)	gltD → / → gltF	glutamate synthase subunit GltD/periplasmic protein GltF
RA	3,368,219	G→A	11.1%	T131T (ACG→ACA)	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,368,220	C→G	11.0%	L132V (CTG→GTG) ‡	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,368,221	T→C	10.8%	L132P (CTG→CCG) ‡	yhcG →	DUF1016 domain‑containing protein YhcG
RA	3,407,293	T→A	10.6%	intergenic (+27/‑82)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,294	T→A	10.7%	intergenic (+28/‑81)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,407,295	T→A	10.6%	intergenic (+29/‑80)	accC → / → yhdT	biotin carboxylase/DUF997 domain‑containing protein YhdT
RA	3,414,515	T→C	5.5%	S218P (TCC→CCC)	acrE →	multidrug efflux pump membrane fusion lipoprotein AcrE
RA	3,420,057	C→G	6.3%	pseudogene (1016/1025 nt)	yhdW →	putative ABC transporter periplasmic binding protein YhdW
RA	3,431,170	A→C	5.3%	R82R (CGT→CGG)	tsaC ←	threonylcarbamoyl‑AMP synthase
RA	3,439,588	G→C	10.6%	intergenic (‑79/+28)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,439,589	G→C	10.5%	intergenic (‑80/+27)	yhdN ← / ← rplQ	conserved protein YhdN/50S ribosomal subunit protein L17
RA	3,442,572	A→G	7.4%	intergenic (‑101/+46)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,573	T→A	7.3%	intergenic (‑102/+45)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,442,574	C→T	7.4%	intergenic (‑103/+44)	rpsM ← / ← rpmJ	30S ribosomal subunit protein S13/50S ribosomal subunit protein L36
RA	3,470,058	T→A	5.7%	intergenic (‑205/+87)	chiA ← / ← tufA	endochitinase/translation elongation factor Tu 1
RA	3,477,878	T→A	9.7%	intergenic (+20/+29)	slyX → / ← slyD	protein SlyX/FKBP‑type peptidyl‑prolyl cis‑trans isomerase SlyD
RA	3,481,686	T→A	10.9%	L133Q (CTG→CAG)	yheS →	ABC transporter ATP‑binding protein YheS
RA	3,483,242	G→C	10.1%	S14T (AGC→ACC) ‡	yheT →	putative hydrolase YheT
RA	3,483,243	C→T	10.3%	S14S (AGC→AGT) ‡	yheT →	putative hydrolase YheT
RA	3,483,244	A→G	10.3%	S15G (AGT→GGT) ‡	yheT →	putative hydrolase YheT
RA	3,483,245	G→C	10.3%	S15T (AGT→ACT) ‡	yheT →	putative hydrolase YheT
RA	3,486,217	A→C	7.0%	Q33P (CAG→CCG) ‡	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,486,218	G→T	6.9%	Q33H (CAG→CAT) ‡	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,486,225	A→T	7.2%	K36* (AAA→TAA)	crp →	DNA‑binding transcriptional dual regulator CRP
RA	3,491,705	A→C	7.5%	intergenic (‑85/+20)	yhfG ← / ← ppiA	DUF2559 domain‑containing protein YhfG/peptidyl‑prolyl cis‑trans isomerase A
RA	3,500,345	G→A	7.5%	V146I (GTT→ATT)	frlA →	fructoselysine/psicoselysine transporter
RA	3,510,359	C→A	10.0%	L206F (TTG→TTT)	yhfX ←	putative PLP‑binding protein YhfX
RA	3,510,363	A→G	10.0%	V205A (GTT→GCT) ‡	yhfX ←	putative PLP‑binding protein YhfX
RA	3,510,364	C→T	10.4%	V205I (GTT→ATT) ‡	yhfX ←	putative PLP‑binding protein YhfX
RA	3,510,368	T→G	10.1%	G203G (GGA→GGC)	yhfX ←	putative PLP‑binding protein YhfX
RA	3,513,964	C→T	8.0%	A142A (GCG→GCA)	gph ←	phosphoglycolate phosphatase
RA	3,528,479	T→G	7.7%	Y671D (TAC→GAC) ‡	igaA →	inner membrane protein ‑ inhibits the Rcs signaling pathway
RA	3,528,480	A→T	7.7%	Y671F (TAC→TTC) ‡	igaA →	inner membrane protein ‑ inhibits the Rcs signaling pathway
RA	3,528,481	C→A	7.7%	Y671* (TAC→TAA) ‡	igaA →	inner membrane protein ‑ inhibits the Rcs signaling pathway
RA	3,530,671	A→C	14.1%	intergenic (+19/+44)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,672	G→C	13.3%	intergenic (+20/+43)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,673	G→C	13.8%	intergenic (+21/+42)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,530,674	G→T	13.9%	intergenic (+22/+41)	hslO → / ← yhgE	molecular chaperone Hsp33/putative transport protein YhgE
RA	3,539,815	A→T	7.0%	intergenic (+109/‑348)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,539,816	T→A	6.0%	intergenic (+110/‑347)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,539,817	A→T	6.9%	intergenic (+111/‑346)	yhgF → / → feoA	putative RNA‑binding protein YhgF/ferrous iron transport protein A
RA	3,557,286	G→A	6.5%	T265M (ACG→ATG)	rtcB ←	RNA‑splicing ligase
RA	3,560,455:1	+G	100%	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR
RA	3,561,293	G→C	6.2%	R54G (CGT→GGT)	glpG ←	rhomboid protease
RA	3,561,296	C→G	6.0%	A53P (GCG→CCG)	glpG ←	rhomboid protease
RA	3,561,300	C→A	5.8%	E51D (GAG→GAT)	glpG ←	rhomboid protease
RA	3,563,546	T→G	6.6%	intergenic (+28/+178)	glpD → / ← yzgL	aerobic glycerol 3‑phosphate dehydrogenase/putative uncharacterized protein YzgL
RA	3,563,547	C→A	6.6%	intergenic (+29/+177)	glpD → / ← yzgL	aerobic glycerol 3‑phosphate dehydrogenase/putative uncharacterized protein YzgL
RA	3,563,554	G→A	6.4%	intergenic (+36/+170)	glpD → / ← yzgL	aerobic glycerol 3‑phosphate dehydrogenase/putative uncharacterized protein YzgL
RA	3,566,210	A→T	8.2%	G124G (GGT→GGA) ‡	glgP ←	glycogen phosphorylase
RA	3,566,212	C→G	8.5%	G124R (GGT→CGT) ‡	glgP ←	glycogen phosphorylase
RA	3,566,215	T→A	8.8%	N123Y (AAC→TAC)	glgP ←	glycogen phosphorylase
RA	3,566,218	C→G	8.6%	G122R (GGT→CGT)	glgP ←	glycogen phosphorylase
RA	3,566,220	A→T	7.9%	L121H (CTC→CAC)	glgP ←	glycogen phosphorylase
RA	3,573,238	G→A	5.9%	H89Y (CAT→TAT)	glgB ←	1,4‑alpha‑glucan branching enzyme
RA	3,578,609	T→G	5.8%	I40L (ATT→CTT)	gntR ←	DNA‑binding transcriptional repressor GntR
RA	3,588,561	A→C	6.8%	V207G (GTG→GGG)	ugpC ←	sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit
RA	3,612,525	C→T	5.4%	Q221* (CAG→TAG)	yhhT →	putative transporter YhhT
RA	3,614,830	G→A	8.2%	Q388Q (CAG→CAA)	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,831	A→T	7.6%	I389F (ATT→TTT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,614,832	T→C	8.4%	I389T (ATT→ACT) ‡	nikA →	Ni(2(+)) ABC transporter periplasmic binding protein
RA	3,617,375	G→T	6.1%	A121S (GCC→TCC) ‡	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,377	C→T	6.1%	A121A (GCC→GCT) ‡	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,380	A→G	6.0%	I122M (ATA→ATG)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,617,382	A→C	6.2%	E123A (GAA→GCA)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD
RA	3,657,599	T→A	7.2%	intergenic (+32/+387)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,601	G→C	7.3%	intergenic (+34/+385)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,657,603	T→A	7.4%	intergenic (+36/+383)	hdeD → / ← arrS	acid‑resistance membrane protein/small regulatory RNA ArrS
RA	3,658,002	C→T	5.7%	noncoding (53/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,658,003	C→G	5.5%	noncoding (52/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,658,004	A→G	5.2%	noncoding (51/69 nt)	arrS ←	small regulatory RNA ArrS
RA	3,674,395	A→T	5.3%	intergenic (+20/‑391)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,396	A→T	5.3%	intergenic (+21/‑390)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,402	T→G	5.1%	intergenic (+27/‑384)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,403	T→C	5.3%	intergenic (+28/‑383)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,674,411	A→C	6.9%	intergenic (+36/‑375)	yhjD → / → yhjE	putative transporter YhjD/putative transporter YhjE
RA	3,676,271	A→T	6.3%	intergenic (+163/+19)	yhjE → / ← yhjG	putative transporter YhjE/AsmA family protein YhjG
RA	3,681,132	A→G	8.0%	V270A (GTG→GCG) ‡	yhjJ ←	peptidase M16 family protein
RA	3,681,133	C→G	8.0%	V270L (GTG→CTG) ‡	yhjJ ←	peptidase M16 family protein
RA	3,681,134	C→T	8.2%	A269A (GCG→GCA)	yhjJ ←	peptidase M16 family protein
RA	3,688,199	A→T	5.3%	N325K (AAT→AAA)	bcsC ←	cellulose biosynthesis protein BcsC
RA	3,700,416	T→C	5.4%	intergenic (+217/‑147)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,418	G→A	5.3%	intergenic (+219/‑145)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,419	T→C	5.2%	intergenic (+220/‑144)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,700,421	G→A	5.1%	intergenic (+222/‑142)	rdlD → / → yhjV	antisense regulatory RNA RdlD/putative transporter YhjV
RA	3,701,840	A→G	5.9%	intergenic (+6/+24)	yhjV → / ← dppF	putative transporter YhjV/dipeptide ABC transporter ATP binding subunit DppF
RA	3,701,843	Δ1 bp	6.1%	intergenic (+9/+21)	yhjV → / ← dppF	putative transporter YhjV/dipeptide ABC transporter ATP binding subunit DppF
RA	3,701,847:1	+C	5.7%	intergenic (+13/+17)	yhjV → / ← dppF	putative transporter YhjV/dipeptide ABC transporter ATP binding subunit DppF
RA	3,701,850	C→T	5.8%	intergenic (+16/+14)	yhjV → / ← dppF	putative transporter YhjV/dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,835	G→A	8.7%	L12L (CTG→TTG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,837	G→C	8.8%	P11R (CCG→CGG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,702,839	T→C	9.6%	Q10Q (CAA→CAG)	dppF ←	dipeptide ABC transporter ATP binding subunit DppF
RA	3,708,595	G→A	5.6%	intergenic (‑890/+21)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,708,596	T→A	5.2%	intergenic (‑891/+20)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,708,597	T→C	5.5%	intergenic (‑892/+19)	dppA ← / ← proK	dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro
RA	3,710,703	G→A	6.4%	intergenic (‑228/+96)	eptB ← / ← yhjX	Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter
RA	3,710,708	T→C	6.0%	intergenic (‑233/+91)	eptB ← / ← yhjX	Kdo2‑lipid A phosphoethanolamine 7''‑transferase/putative pyruvate transporter
RA	3,716,507	A→G	7.2%	intergenic (‑113/‑40)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,716,508	A→T	7.3%	intergenic (‑114/‑39)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,716,509	C→T	7.4%	intergenic (‑115/‑38)	bisC ← / → yiaD	biotin sulfoxide reductase/PF13488 family lipoprotein YiaD
RA	3,720,793	G→T	6.0%	Q38H (CAG→CAT)	insJ →	insertion element IS150 protein InsA
RA	3,732,136	A→C	5.9%	intergenic (+13/‑65)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,139	G→T	5.0%	intergenic (+16/‑62)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,141	G→C	6.2%	intergenic (+18/‑60)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,143	A→C	6.1%	intergenic (+20/‑58)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,732,146	G→T	6.2%	intergenic (+23/‑55)	xylF → / → xylG	xylose ABC transporter periplasmic binding protein/xylose ABC transporter ATP binding subunit
RA	3,736,218	G→T	5.2%	intergenic (+61/+135)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,219	A→C	5.1%	intergenic (+62/+134)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,225	T→G	5.1%	intergenic (+68/+128)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,736,226	T→C	5.1%	intergenic (+69/+127)	xylR → / ← bax	DNA‑binding transcriptional dual regulator XylR/putative glycoside hydrolase Bax
RA	3,757,939	Δ1 bp	6.5%	intergenic (‑112/+78)	yiaY ← / ← selB	L‑threonine dehydrogenase/selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,757,942	C→A	7.5%	intergenic (‑115/+75)	yiaY ← / ← selB	L‑threonine dehydrogenase/selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,757,945	T→G	6.3%	intergenic (‑118/+72)	yiaY ← / ← selB	L‑threonine dehydrogenase/selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,757,947:1	+T	6.4%	intergenic (‑120/+70)	yiaY ← / ← selB	L‑threonine dehydrogenase/selenocysteyl‑tRNA‑specific translation elongation factor
RA	3,760,788	C→G	6.2%	A154A (GCG→GCC)	selA ←	selenocysteine synthase
RA	3,770,646	G→T	6.0%	P245Q (CCG→CAG)	yibH ←	inner membrane protein YibH
RA	3,770,649	A→C	5.8%	L244W (TTG→TGG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,650	A→T	5.8%	L244M (TTG→ATG) ‡	yibH ←	inner membrane protein YibH
RA	3,770,651	G→T	5.9%	A243A (GCC→GCA)	yibH ←	inner membrane protein YibH
RA	3,770,654	A→C	5.9%	A242A (GCT→GCG)	yibH ←	inner membrane protein YibH
RA	3,774,207	C→T	6.4%	intergenic (+13/‑217)	mtlA → / → mtlD	mannitol‑specific PTS enzyme IICBA component/mannitol‑1‑phosphate 5‑dehydrogenase
RA	3,774,214	C→T	6.3%	intergenic (+20/‑210)	mtlA → / → mtlD	mannitol‑specific PTS enzyme IICBA component/mannitol‑1‑phosphate 5‑dehydrogenase
RA	3,774,215	A→G	7.6%	intergenic (+21/‑209)	mtlA → / → mtlD	mannitol‑specific PTS enzyme IICBA component/mannitol‑1‑phosphate 5‑dehydrogenase
RA	3,774,222	A→G	7.0%	intergenic (+28/‑202)	mtlA → / → mtlD	mannitol‑specific PTS enzyme IICBA component/mannitol‑1‑phosphate 5‑dehydrogenase
RA	3,778,876	G→A	6.4%	G493D (GGC→GAC)	lldP →	lactate/glycolate:H(+) symporter LldP
RA	3,778,879	T→C	6.4%	V494A (GTC→GCC)	lldP →	lactate/glycolate:H(+) symporter LldP
RA	3,779,929	C→T	6.0%	L35L (CTG→TTG)	lldD →	L‑lactate dehydrogenase
RA	3,779,934	C→G	6.1%	R36R (CGC→CGG)	lldD →	L‑lactate dehydrogenase
RA	3,779,939	A→G	5.9%	N38S (AAC→AGC)	lldD →	L‑lactate dehydrogenase
RA	3,786,896	T→C	5.7%	V20A (GTT→GCT)	envC →	murein hydrolase activator EnvC
RA	3,786,898	C→A	6.3%	L21I (CTT→ATT) ‡	envC →	murein hydrolase activator EnvC
RA	3,786,899	T→A	6.1%	L21H (CTT→CAT) ‡	envC →	murein hydrolase activator EnvC
RA	3,786,900	T→G	5.7%	L21L (CTT→CTG) ‡	envC →	murein hydrolase activator EnvC
RA	3,786,902	G→A	5.8%	S22N (AGC→AAC)	envC →	murein hydrolase activator EnvC
RA	3,788,865	T→G	5.5%	D255E (GAT→GAG)	yibQ →	divergent polysaccharide deacetylase domain‑containing protein YibQ
RA	3,790,300	A→T	11.6%	intergenic (‑219/+20)	waaH ← / ← tdh	UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase
RA	3,790,303	A→T	11.6%	intergenic (‑222/+17)	waaH ← / ← tdh	UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase
RA	3,794,143	A→C	5.1%	K53Q (AAG→CAG)	rfaD →	ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase
RA	3,794,150	A→T	5.1%	D55V (GAC→GTC)	rfaD →	ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase
RA	3,794,157	G→T	5.5%	L57L (CTG→CTT)	rfaD →	ADP‑L‑glycero‑D‑mannoheptose 6‑epimerase
RA	3,794,973	G→C	5.1%	M15I (ATG→ATC)	waaF →	ADP‑heptose‑‑LPS heptosyltransferase 2
RA	3,798,234	A→T	6.9%	intergenic (+27/+5)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,798,235	A→T	6.7%	intergenic (+28/+4)	waaL → / ← waaU	O‑antigen ligase/putative ADP‑heptose:LPS heptosyltransferase 4
RA	3,809,354	A→G	6.8%	E272G (GAA→GGA)	waaA →	KDO transferase
RA	3,809,356	C→A	6.8%	R273S (CGC→AGC)	waaA →	KDO transferase
RA	3,809,359	T→G	6.9%	F274V (TTC→GTC) ‡	waaA →	KDO transferase
RA	3,809,361	C→T	7.0%	F274F (TTC→TTT) ‡	waaA →	KDO transferase
RA	3,809,681	T→A	5.0%	V381D (GTT→GAT)	waaA →	KDO transferase
RA	3,811,212	C→T	5.5%	intergenic (‑60/+38)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,811,216	C→T	5.4%	intergenic (‑64/+34)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,811,217	G→C	5.6%	intergenic (‑65/+33)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,811,218	G→C	5.0%	intergenic (‑66/+32)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,811,219	A→G	5.1%	intergenic (‑67/+31)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,811,223	A→G	5.1%	intergenic (‑71/+27)	mutM ← / ← rpmG	DNA‑formamidopyrimidine glycosylase/50S ribosomal subunit protein L33
RA	3,815,816	C→G	5.7%	intergenic (‑48/+47)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
RA	3,815,819	C→G	5.5%	intergenic (‑51/+44)	pyrE ← / ← rph	orotate phosphoribosyltransferase/truncated RNase PH
MC JC	3,815,859	Δ82 bp	100%		[rph]	[rph]
RA	3,817,940	T→A	6.9%	F61I (TTC→ATC)	dinD →	DNA damage‑inducible protein D
RA	3,817,948	G→T	6.7%	E63D (GAG→GAT)	dinD →	DNA damage‑inducible protein D
RA	3,817,949	A→C	6.8%	I64L (ATC→CTC)	dinD →	DNA damage‑inducible protein D
RA	3,820,243:1	+T	7.0%	coding (928/1683 nt)	ligB ←	DNA ligase B
RA	3,820,248	Δ1 bp	6.8%	coding (923/1683 nt)	ligB ←	DNA ligase B
RA	3,821,489	T→A	5.9%	I21N (ATT→AAT)	gmk →	guanylate kinase
RA	3,832,188	A→T	6.7%	intergenic (+22/+31)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,191	C→G	6.5%	intergenic (+25/+28)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,194	A→T	6.1%	intergenic (+28/+25)	yicH → / ← yicI	AsmA famly protein YicH/alpha‑D‑xyloside xylohydrolase
RA	3,832,800	C→A	5.1%	A580S (GCG→TCG)	yicI ←	alpha‑D‑xyloside xylohydrolase
RA	3,838,583	T→A	6.3%	I112I (ATT→ATA)	yicL →	putative inner membrane protein
RA	3,850,763	C→T	5.5%	intergenic (‑37/+39)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,765	T→G	5.5%	intergenic (‑39/+37)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,767	A→T	5.4%	intergenic (‑41/+35)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,769	C→A	5.3%	intergenic (‑43/+33)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,850,771	A→G	5.3%	intergenic (‑45/+31)	uhpA ← / ← ilvN	DNA‑binding transcriptional activator UhpA/acetohydroxy acid synthase I subunit IlvN
RA	3,888,212	Δ1 bp	6.4%	intergenic (+20/‑223)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,219	T→A	7.6%	intergenic (+27/‑216)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,888,224:1	+A	7.1%	intergenic (+32/‑211)	mnmE → / → tnaC	5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide
RA	3,891,502	C→G	8.3%	intergenic (+19/‑113)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,891,504	T→A	9.2%	intergenic (+21/‑111)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,891,506	C→G	7.9%	intergenic (+23/‑109)	tnaB → / → mdtL	tryptophan:H(+) symporter TnaB/efflux pump MdtL
RA	3,895,234	G→T	5.2%	intergenic (+16/+38)	yieF → / ← adeP	chromate reductase/adenine:H(+) symporter
RA	3,895,235	C→G	5.1%	intergenic (+17/+37)	yieF → / ← adeP	chromate reductase/adenine:H(+) symporter
RA	3,895,244	A→C	5.1%	intergenic (+26/+28)	yieF → / ← adeP	chromate reductase/adenine:H(+) symporter
RA	3,900,410	A→T	7.3%	P56P (CCT→CCA)	yieL ←	putative hydrolase YieL
RA	3,900,542	A→T	5.5%	I12I (ATT→ATA)	yieL ←	putative hydrolase YieL
RA	3,900,545	A→T	5.3%	A11A (GCT→GCA)	yieL ←	putative hydrolase YieL
RA	3,906,826	T→C	8.9%	intergenic (‑259/+27)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,906,828	A→T	9.0%	intergenic (‑261/+25)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,906,830	G→A	9.0%	intergenic (‑263/+23)	bglG ← / ← phoU	transcriptional antiterminator BglG/negative regulator of the pho regulon
RA	3,908,512	A→C	5.2%	intergenic (‑146/+37)	pstB ← / ← pstA	phosphate ABC transporter ATP binding subunit/phosphate ABC transporter membrane subunit PstA
RA	3,920,796	T→C	6.0%	A31A (GCA→GCG)	atpF ←	ATP synthase Fo complex subunit b
RA	3,923,717	G→A	7.4%	intergenic (‑37/+27)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,718	G→C	7.4%	intergenic (‑38/+26)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,719	G→C	7.3%	intergenic (‑39/+25)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,923,720	T→C	7.5%	intergenic (‑40/+24)	rsmG ← / ← mnmG	16S rRNA m(7)G527 methyltransferase/5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG
RA	3,927,125	C→A	5.9%	intergenic (‑122/‑30)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,927,126	A→T	5.2%	intergenic (‑123/‑29)	asnC ← / → asnA	DNA‑binding transcriptional dual regulator AsnC/asparagine synthetase A
RA	3,928,865	T→G	5.1%	T247P (ACG→CCG)	viaA ←	protein ViaA
RA	3,928,868	C→A	5.1%	A246S (GCG→TCG)	viaA ←	protein ViaA
RA	3,938,255	T→A	5.2%	L10Q (CTG→CAG)	rbsR →	DNA‑binding transcriptional dual regulator RbsR
RA	3,947,048	G→T	10.4%	intergenic (+16/+80)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,049	A→T	9.2%	intergenic (+17/+79)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,050	A→T	10.8%	intergenic (+18/+78)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,947,051	A→C	10.4%	intergenic (+19/+77)	trpT → / ← hdfR	tRNA‑Trp/DNA‑binding transcriptional dual regulator HdfR
RA	3,953,432	C→T	7.4%	intergenic (+19/‑46)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,433	A→G	7.6%	intergenic (+20/‑45)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,436	C→T	7.4%	intergenic (+23/‑42)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,953,437	A→G	7.6%	intergenic (+24/‑41)	ilvE → / → ilvD	branched‑chain‑amino‑acid aminotransferase/dihydroxy‑acid dehydratase
RA	3,956,973:1	+A	8.7%	coding (848/894 nt)	ilvY ←	DNA‑binding transcriptional dual regulator IlvY
RA	3,956,978	Δ1 bp	8.5%	coding (843/894 nt)	ilvY ←	DNA‑binding transcriptional dual regulator IlvY
RA	3,959,515	T→A	5.2%	intergenic (+70/+17)	ilvC → / ← ppiC	ketol‑acid reductoisomerase (NADP(+))/peptidyl‑prolyl cis‑trans isomerase C
RA	3,959,924	A→T	6.2%	intergenic (‑111/+88)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,925	A→T	6.5%	intergenic (‑112/+87)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,959,926	A→T	6.4%	intergenic (‑113/+86)	ppiC ← / ← yifN	peptidyl‑prolyl cis‑trans isomerase C/putative toxin YifN
RA	3,963,415	A→C	6.3%	L272R (CTG→CGG) ‡	gpp ←	guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
RA	3,963,416	G→T	7.0%	L272M (CTG→ATG) ‡	gpp ←	guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
RA	3,966,768	G→T	7.6%	E118* (GAA→TAA) ‡	rho →	transcription termination factor Rho
RA	3,966,769	A→T	7.5%	E118V (GAA→GTA) ‡	rho →	transcription termination factor Rho
RA	3,966,770	A→C	7.9%	E118D (GAA→GAC) ‡	rho →	transcription termination factor Rho
RA	3,969,429	A→C	6.3%	K133N (AAA→AAC)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,434	A→C	5.6%	D135A (GAT→GCT) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,435	T→A	5.7%	D135E (GAT→GAA) ‡	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,436	G→T	5.9%	A136S (GCG→TCG)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,969,441	G→T	5.9%	A137A (GCG→GCT)	wzzE →	enterobacterial common antigen polysaccharide co‑polymerase
RA	3,976,399	C→A	7.1%	A41E (GCA→GAA)	wzxE →	lipid III flippase
RA	3,976,402	A→T	6.6%	N42I (AAT→ATT)	wzxE →	lipid III flippase
RA	3,976,405	T→G	6.7%	F43C (TTC→TGC)	wzxE →	lipid III flippase
RA	3,984,227	G→A	7.7%	intergenic (+34/+125)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,228	C→A	7.7%	intergenic (+35/+124)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,234	A→T	6.7%	intergenic (+41/+118)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,235	A→T	6.7%	intergenic (+42/+117)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,241	T→G	6.1%	intergenic (+48/+111)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,984,242	T→C	6.0%	intergenic (+49/+110)	aslB → / ← aslA	putative anaerobic sulfatase maturation enzyme AslB/arylsulfatase
RA	3,991,334	T→A	7.6%	I61N (ATT→AAT) ‡	cyaA →	adenylate cyclase
RA	3,991,335	T→A	7.5%	I61I (ATT→ATA) ‡	cyaA →	adenylate cyclase
RA	3,993,301	G→T	5.5%	G717C (GGC→TGC) ‡	cyaA →	adenylate cyclase
RA	3,993,303	C→A	5.7%	G717G (GGC→GGA) ‡	cyaA →	adenylate cyclase
RA	3,993,305	T→A	5.4%	L718Q (CTG→CAG)	cyaA →	adenylate cyclase
RA	3,993,307	T→G	5.5%	S719A (TCA→GCA) ‡	cyaA →	adenylate cyclase
RA	3,993,309	A→C	5.5%	S719S (TCA→TCC) ‡	cyaA →	adenylate cyclase
MC JC	4,001,645	Δ5 bp	100%	coding (220‑224/951 nt)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,259	G→A	8.0%	M278I (ATG→ATA)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,264	T→C	8.1%	F280S (TTT→TCT) ‡	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,265	T→A	8.1%	F280L (TTT→TTA) ‡	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,266	G→A	7.8%	E281K (GAG→AAG)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,271	T→C	7.7%	F282F (TTT→TTC)	corA →	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter
RA	4,002,398	T→C	6.3%	intergenic (+22/+21)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,400	T→A	6.8%	intergenic (+24/+19)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,002,402	G→A	6.3%	intergenic (+26/+17)	corA → / ← yigF	Ni(2(+))/Co(2(+))/Mg(2(+)) transporter/DUF2628 domain‑containing protein YigF
RA	4,029,932	T→A	6.9%	K347M (AAG→ATG) ‡	fadB ←	dodecenoyl‑CoA delta‑isomerase, enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, 3‑hydroxyacyl‑CoA dehydrogenase
RA	4,029,933	T→A	6.4%	K347* (AAG→TAG) ‡	fadB ←	dodecenoyl‑CoA delta‑isomerase, enoyl‑CoA hydratase, 3‑hydroxybutyryl‑CoA epimerase, 3‑hydroxyacyl‑CoA dehydrogenase
RA	4,041,216	T→C	7.2%	Q73R (CAG→CGG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,217	G→A	7.2%	Q73* (CAG→TAG) ‡	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,220	T→C	7.2%	S72G (AGC→GGC)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,041,221	G→A	7.3%	A71A (GCC→GCT)	mobB ←	molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
RA	4,046,784	A→T	5.2%	intergenic (‑182/‑182)	yihG ← / → polA	putative acyltransferase YihG/DNA polymerase I
RA	4,051,259	G→T	10.1%	noncoding (224/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,051,262	A→C	9.7%	noncoding (227/245 nt)	csrC →	small regulatory RNA CsrC
RA	4,060,261	G→T	7.9%	intergenic (+31/‑186)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,060,264	A→C	8.4%	intergenic (+34/‑183)	bipA → / → yihL	ribosome‑dependent GTPase, ribosome assembly factor/putative transcriptional regulator YihL
RA	4,062,371	A→T	5.7%	N42I (AAT→ATT)	yihN →	putative transporter YihN
RA	4,074,839	T→C	5.1%	H57H (CAT→CAC)	yihW →	putative DNA‑binding transcriptional regulator YihW
RA	4,074,841	A→G	5.2%	H58R (CAC→CGC) ‡	yihW →	putative DNA‑binding transcriptional regulator YihW
RA	4,074,842	C→T	5.1%	H58H (CAC→CAT) ‡	yihW →	putative DNA‑binding transcriptional regulator YihW
RA	4,074,844	G→A	5.2%	G59D (GGT→GAT)	yihW →	putative DNA‑binding transcriptional regulator YihW
RA	4,076,598	G→C	5.6%	P151P (CCG→CCC)	yihY →	putative inner membrane protein
RA	4,076,603	T→C	5.7%	L153P (CTG→CCG) ‡	yihY →	putative inner membrane protein
RA	4,076,604	G→A	5.7%	L153L (CTG→CTA) ‡	yihY →	putative inner membrane protein
RA	4,076,609	G→C	5.6%	G155A (GGG→GCG)	yihY →	putative inner membrane protein
RA	4,082,696	G→C	6.3%	Q22E (CAG→GAG)	fdoH ←	formate dehydrogenase O subunit beta
RA	4,088,091	G→C	9.7%	intergenic (+34/+16)	yiiG → / ← frvR	DUF3829 domain‑containing lipoprotein YiiG/putative transcriptional regulator FrvR
RA	4,106,369	T→G	7.1%	noncoding (40/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,370	G→C	7.2%	noncoding (41/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,106,371	C→A	7.3%	noncoding (42/58 nt)	cpxQ →	small regulatory RNA CpxQ
RA	4,110,717	A→T	8.9%	intergenic (+32/+23)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,719	G→C	9.2%	intergenic (+34/+21)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,110,721	A→T	9.0%	intergenic (+36/+19)	cdh → / ← tpiA	CDP‑diacylglycerol diphosphatase/triose‑phosphate isomerase
RA	4,113,473	T→C	6.5%	L61L (TTG→CTG) ‡	uspD →	universal stress protein D
RA	4,113,474	T→A	6.5%	L61* (TTG→TAG) ‡	uspD →	universal stress protein D
RA	4,113,475	G→A	6.5%	L61L (TTG→TTA) ‡	uspD →	universal stress protein D
RA	4,114,536	C→T	7.6%	intergenic (‑64/+33)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,537	G→T	7.2%	intergenic (‑65/+32)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,538	A→C	7.6%	intergenic (‑66/+31)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,114,539	A→G	7.6%	intergenic (‑67/+30)	fpr ← / ← glpX	flavodoxin/ferredoxin‑NADP(+) reductase/fructose‑1,6‑bisphosphatase 2
RA	4,130,005	G→A	6.1%	L57L (TTG→TTA)	metL →	fused aspartate kinase/homoserine dehydrogenase 2
RA	4,130,008	T→C	6.1%	I58I (ATT→ATC)	metL →	fused aspartate kinase/homoserine dehydrogenase 2
RA	4,136,033	G→A	5.6%	intergenic (+18/‑75)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,038	T→C	5.8%	intergenic (+23/‑70)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,039	T→A	6.2%	intergenic (+24/‑69)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,042	T→A	5.6%	intergenic (+27/‑66)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,043	G→A	5.5%	intergenic (+28/‑65)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,136,048	T→C	5.6%	intergenic (+33/‑60)	katG → / → yijE	hydroperoxidase I/cystine exporter
RA	4,141,379	G→C	5.3%	L281L (CTC→CTG) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,141,380	A→T	5.2%	L281H (CTC→CAC) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,141,381	G→C	5.1%	L281V (CTC→GTC) ‡	ptsA ←	putative PTS multiphosphoryl transfer protein PtsA
RA	4,147,304	G→C	6.3%	R56P (CGG→CCG)	frwD →	putative PTS enzyme IIB component FrwD
RA	4,162,150	T→G	10.9%	intergenic (+20/+20)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,151	G→C	12.0%	intergenic (+21/+19)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,152	G→C	11.2%	intergenic (+22/+18)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,162,153	C→A	11.5%	intergenic (+23/+17)	yijD → / ← trmA	conserved inner membrane protein YijD/tRNA m(5)U54 methyltransferase
RA	4,177,171	T→A	6.1%	intergenic (+43/‑187)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,177,172	T→A	5.9%	intergenic (+44/‑186)	tufB → / → secE	translation elongation factor Tu 2/Sec translocon subunit SecE
RA	4,179,964	T→A	5.5%	intergenic (+381/‑32)	rplA → / → rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
RA	4,179,965	T→A	5.6%	intergenic (+382/‑31)	rplA → / → rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
RA	4,179,966	T→A	5.5%	intergenic (+383/‑30)	rplA → / → rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
RA	4,184,543	C→A	100%	P1100Q (CCG→CAG)	rpoB →	RNA polymerase subunit beta
RA	4,185,306	A→T	5.6%	intergenic (+33/‑44)	rpoB → / → rpoC	RNA polymerase subunit beta/RNA polymerase subunit beta'
RA	4,185,307	A→T	5.6%	intergenic (+34/‑43)	rpoB → / → rpoC	RNA polymerase subunit beta/RNA polymerase subunit beta'
RA	4,185,314	G→A	5.6%	intergenic (+41/‑36)	rpoB → / → rpoC	RNA polymerase subunit beta/RNA polymerase subunit beta'
RA	4,185,913	G→T	6.0%	L188L (CTG→CTT)	rpoC →	RNA polymerase subunit beta'
RA	4,185,915	T→A	6.0%	L189Q (CTG→CAG)	rpoC →	RNA polymerase subunit beta'
RA	4,185,917	A→C	5.8%	K190Q (AAG→CAG)	rpoC →	RNA polymerase subunit beta'
RA	4,185,923	A→C	6.3%	M192L (ATG→CTG)	rpoC →	RNA polymerase subunit beta'
RA	4,196,164	G→C	5.8%	intergenic (‑65/+168)	thiC ← / ← rsd	phosphomethylpyrimidine synthase/regulator of sigma D
RA	4,196,166	A→T	5.8%	intergenic (‑67/+166)	thiC ← / ← rsd	phosphomethylpyrimidine synthase/regulator of sigma D
RA	4,196,168	G→C	5.9%	intergenic (‑69/+164)	thiC ← / ← rsd	phosphomethylpyrimidine synthase/regulator of sigma D
RA	4,229,433:1	+G	5.9%	intergenic (+71/+20)	yjbB → / ← pepE	putative inorganic phosphate export protein/peptidase E
RA	4,229,438	Δ1 bp	6.1%	intergenic (+76/+15)	yjbB → / ← pepE	putative inorganic phosphate export protein/peptidase E
RA	4,261,358	T→A	5.2%	intergenic (+52/‑311)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,261,359	T→A	5.2%	intergenic (+53/‑310)	yjbM → / → dusA	uncharacterized protein YjbM/tRNA‑dihydrouridine synthase A
RA	4,262,250	G→C	6.3%	G194G (GGG→GGC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,262,255	G→C	5.3%	S196T (AGC→ACC)	dusA →	tRNA‑dihydrouridine synthase A
RA	4,279,854	T→C	7.5%	intergenic (+26/‑126)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,855	G→A	7.6%	intergenic (+27/‑125)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,858	A→C	7.5%	intergenic (+30/‑122)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,861	G→T	7.9%	intergenic (+33/‑119)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,864	T→C	7.5%	intergenic (+36/‑116)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,279,865	G→A	8.0%	intergenic (+37/‑115)	ghxP → / → yjcE	guanine/hypoxanthine transporter GhxP/putative transporter YjcE
RA	4,280,219	A→C	8.2%	E80D (GAA→GAC)	yjcE →	putative transporter YjcE
RA	4,280,224	G→T	7.7%	G82V (GGT→GTT)	yjcE →	putative transporter YjcE
RA	4,281,677	T→A	5.4%	intergenic (+48/+106)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,678	C→A	5.3%	intergenic (+49/+105)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,679	T→G	5.4%	intergenic (+50/+104)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,281,680	T→A	5.3%	intergenic (+51/+103)	yjcE → / ← yjcF	putative transporter YjcE/pentapeptide repeat‑containing protein YjcF
RA	4,289,094	T→A	6.3%	I444N (ATT→AAT)	nrfA →	cytochrome c552 nitrite reductase
RA	4,296,060	C→T	37.4%	intergenic (+266/+376)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,296,380:1	+CG	100%	intergenic (+586/+56)	gltP → / ← yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
RA	4,297,193	G→T	6.2%	intergenic (‑68/+26)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,194	A→T	6.1%	intergenic (‑69/+25)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,195	A→T	6.1%	intergenic (‑70/+24)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,297,196	A→C	6.4%	intergenic (‑71/+23)	yjcO ← / ← fdhF	Sel1 repeat‑containing protein YjcO/formate dehydrogenase H
RA	4,312,074	C→T	5.7%	intergenic (‑32/+27)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,080	G→C	6.2%	intergenic (‑38/+21)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,083	G→C	5.9%	intergenic (‑41/+18)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,312,089	A→G	5.5%	intergenic (‑47/+12)	alsB ← / ← alsR	D‑allose ABC transporter periplasmic binding protein/DNA‑binding transcriptional repressor AlsR
RA	4,313,581	A→T	5.2%	K78* (AAG→TAG) ‡	rpiB →	allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B
RA	4,313,582	A→T	5.2%	K78M (AAG→ATG) ‡	rpiB →	allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B
RA	4,313,586	T→C	5.1%	F79F (TTT→TTC)	rpiB →	allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B
RA	4,314,227	A→T	5.9%	intergenic (+30/+117)	yjdP → / ← phnP	protein YjdP/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA	4,314,233	A→T	5.4%	intergenic (+36/+111)	yjdP → / ← phnP	protein YjdP/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase
RA	4,317,977	A→G	5.3%	intergenic (‑82/+29)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,978	A→C	5.4%	intergenic (‑83/+28)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,984	T→A	5.1%	intergenic (‑89/+22)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,317,985	T→A	5.6%	intergenic (‑90/+21)	phnL ← / ← phnK	methylphosphonate degradation complex subunit PhnL/carbon‑phosphorus lyase subunit PhnK
RA	4,325,281	G→C	6.4%	intergenic (‑116/+17)	phnC ← / ← yjdN	phosphonate ABC transporter ATP binding subunit/conserved protein YjdN
RA	4,325,283	G→C	7.1%	intergenic (‑118/+15)	phnC ← / ← yjdN	phosphonate ABC transporter ATP binding subunit/conserved protein YjdN
RA	4,325,285	G→C	6.4%	intergenic (‑120/+13)	phnC ← / ← yjdN	phosphonate ABC transporter ATP binding subunit/conserved protein YjdN
RA	4,325,829	G→T	5.0%	intergenic (‑88/+570)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,325,830	C→T	5.0%	intergenic (‑89/+569)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,326,088	T→G	5.2%	intergenic (‑347/+311)	yjdN ← / ← yjdM	conserved protein YjdN/conserved protein YjdM
RA	4,332,868	G→T	6.0%	R135R (CGC→CGA)	basS ←	sensory histidine kinase BasS
RA	4,332,871	A→C	5.9%	S134R (AGT→AGG)	basS ←	sensory histidine kinase BasS
RA	4,336,974	A→T	5.5%	S20T (TCG→ACG)	adiC ←	arginine:agmatine antiporter
RA	4,336,979	A→C	5.3%	M18R (ATG→AGG)	adiC ←	arginine:agmatine antiporter
RA	4,336,981	C→G	5.4%	L17L (CTG→CTC) ‡	adiC ←	arginine:agmatine antiporter
RA	4,336,983	G→T	5.5%	L17M (CTG→ATG) ‡	adiC ←	arginine:agmatine antiporter
RA	4,339,802	A→G	5.5%	A240A (GCT→GCC)	adiA ←	arginine decarboxylase, degradative
RA	4,339,805	C→T	5.6%	Q239Q (CAG→CAA)	adiA ←	arginine decarboxylase, degradative
RA	4,353,170	G→A	5.0%	intergenic (+89/+30)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,171	C→G	5.1%	intergenic (+90/+29)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,172	C→G	5.3%	intergenic (+91/+28)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,353,173	T→C	5.0%	intergenic (+92/+27)	ghoT → / ← lysU	toxin of the GhoTS toxin‑antitoxin system/lysine‑‑tRNA ligase/Ap4A synthetase/Ap3A synthetase
RA	4,365,132	T→G	7.0%	A75A (GCA→GCC) ‡	cutA ←	copper binding protein CutA
RA	4,365,133	G→C	7.1%	A75G (GCA→GGA) ‡	cutA ←	copper binding protein CutA
RA	4,365,134	C→A	6.9%	A75S (GCA→TCA) ‡	cutA ←	copper binding protein CutA
RA	4,366,854	T→G	5.7%	intergenic (‑81/+37)	dcuA ← / ← aspA	C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase
RA	4,366,855	C→A	7.4%	intergenic (‑82/+36)	dcuA ← / ← aspA	C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase
RA	4,371,931	G→T	5.0%	E303* (GAA→TAA)	groL →	chaperonin GroEL
RA	4,376,280	G→A	5.9%	intergenic (+15/‑37)	efp → / → ecnA	protein chain elongation factor EF‑P/entericidin A lipoprotein, antidote to entericidin B
RA	4,376,291	T→C	6.0%	intergenic (+26/‑26)	efp → / → ecnA	protein chain elongation factor EF‑P/entericidin A lipoprotein, antidote to entericidin B
RA	4,376,819	A→T	5.6%	intergenic (+120/‑56)	ecnB → / → gdx	bacteriolytic entericidin B lipoprotein/guanidinium exporter
RA	4,376,822	A→T	5.8%	intergenic (+123/‑53)	ecnB → / → gdx	bacteriolytic entericidin B lipoprotein/guanidinium exporter
RA	4,378,857	G→A	5.7%	R30C (CGC→TGC)	ampC ←	beta‑lactamase
RA	4,378,858	A→T	5.4%	H29Q (CAT→CAA) ‡	ampC ←	beta‑lactamase
RA	4,378,859	T→C	5.7%	H29R (CAT→CGT) ‡	ampC ←	beta‑lactamase
RA	4,381,335	A→C	5.1%	R328R (CGT→CGG)	frdA ←	fumarate reductase flavoprotein subunit
RA	4,388,496	T→A	6.4%	Q292L (CAG→CTG)	mscM ←	miniconductance mechanosensitive channel MscM
RA	4,388,502	G→C	6.4%	A290G (GCC→GGC)	mscM ←	miniconductance mechanosensitive channel MscM
RA	4,388,508	T→A	6.2%	Q288L (CAG→CTG)	mscM ←	miniconductance mechanosensitive channel MscM
RA	4,398,215	C→T	5.3%	I268I (ATC→ATT)	mutL →	DNA mismatch repair protein MutL
RA	4,429,112:1	+G	6.4%	coding (178/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,120	Δ1 bp	7.5%	coding (186/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,125	A→G	7.4%	E64G (GAA→GGA)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,127	A→T	7.4%	I65F (ATC→TTC) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,129	C→T	7.4%	I65I (ATC→ATT) ‡	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,133:1	+C	7.4%	coding (199/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,429,140	Δ1 bp	5.8%	coding (206/621 nt)	fklB →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase FklB
RA	4,439,845	T→A	7.4%	intergenic (+52/+27)	ytfK → / ← ytfL	DUF1107 domain‑containing protein YtfK/putative inner membrane protein
RA	4,444,192	C→G	5.5%	G27G (GGC→GGG)	tamB →	translocation and assembly module subunit TamB
RA	4,444,193	A→C	5.5%	T28P (ACC→CCC)	tamB →	translocation and assembly module subunit TamB
RA	4,454,591	G→A	6.7%	intergenic (+13/+20)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,592	T→C	7.0%	intergenic (+14/+19)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,593	G→A	7.0%	intergenic (+15/+18)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,454,594	T→C	7.0%	intergenic (+16/+17)	yjfF → / ← fbp	galactofuranose ABC transporter putative membrane subunit YjtF/fructose‑1,6‑bisphosphatase 1
RA	4,460,476	A→G	7.1%	intergenic (‑112/+46)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,477	A→C	7.0%	intergenic (‑113/+45)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,483	T→A	6.8%	intergenic (‑119/+39)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,484	T→A	6.9%	intergenic (‑120/+38)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,490	G→T	5.5%	intergenic (‑126/+32)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,460,491	C→T	5.5%	intergenic (‑127/+31)	nrdG ← / ← nrdD	anaerobic ribonucleoside‑triphosphate reductase activating protein/anaerobic ribonucleoside‑triphosphate reductase
RA	4,464,327	A→T	5.9%	I128N (ATC→AAC)	treC ←	trehalose‑6‑phosphate hydrolase
RA	4,464,329	A→T	5.9%	Y127* (TAT→TAA)	treC ←	trehalose‑6‑phosphate hydrolase
RA	4,464,332	A→T	5.9%	F126L (TTT→TTA) ‡	treC ←	trehalose‑6‑phosphate hydrolase
RA	4,464,334	A→T	6.4%	F126I (TTT→ATT) ‡	treC ←	trehalose‑6‑phosphate hydrolase
RA	4,469,455	A→G	8.7%	T611A (ACC→GCC) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,469,456	C→G	8.7%	T611S (ACC→AGC) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,469,457	C→T	8.7%	T611T (ACC→ACT) ‡	mgtA →	Mg(2(+)) importing P‑type ATPase
RA	4,470,951	A→C	7.1%	intergenic (‑38/+35)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,952	T→C	7.2%	intergenic (‑39/+34)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,957	G→A	6.6%	intergenic (‑44/+29)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,470,958	G→T	7.2%	intergenic (‑45/+28)	ridA ← / ← pyrI	enamine/imine deaminase, redox regulated chaperone/aspartate carbamoyltransferase, PyrI subunit
RA	4,471,126	C→A	5.4%	V108F (GTC→TTC)	pyrI ←	aspartate carbamoyltransferase, PyrI subunit
RA	4,473,633	C→T	6.1%	A141T (GCA→ACA)	bdcA ←	c‑di‑GMP‑binding biofilm dispersal mediator protein
RA	4,473,634	A→T	5.9%	V140V (GTT→GTA) ‡	bdcA ←	c‑di‑GMP‑binding biofilm dispersal mediator protein
RA	4,473,635	A→G	6.0%	V140A (GTT→GCT) ‡	bdcA ←	c‑di‑GMP‑binding biofilm dispersal mediator protein
RA	4,479,012	A→T	5.4%	intergenic (+123/+22)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,016	G→C	5.1%	intergenic (+127/+18)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,479,020	A→T	5.6%	intergenic (+131/+14)	rraB → / ← yjgM	ribonuclease E inhibitor protein B/putative acetyltransferase YjgM
RA	4,488,424	G→T	8.2%	intergenic (+24/+137)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,425	A→T	7.7%	intergenic (+25/+136)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,426	A→T	7.8%	intergenic (+26/+135)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,488,427	A→C	7.8%	intergenic (+27/+134)	lptG → / ← yjgR	lipopolysaccharide transport system protein LptG/DUF853 domain‑containing protein YjgR
RA	4,491,164	C→A	5.1%	intergenic (‑25/+42)	idnR ← / ← idnT	DNA‑binding transcriptional dual regulator IdnR/L‑idonate/5‑ketogluconate/gluconate transporter
RA	4,496,511	A→G	5.2%	intergenic (+22/‑239)	leuX → / → intB	tRNA‑Leu/KpLE2 phage‑like element; putative integrase
RA	4,496,512	C→T	5.2%	intergenic (+23/‑238)	leuX → / → intB	tRNA‑Leu/KpLE2 phage‑like element; putative integrase
RA	4,497,954	A→T	5.2%	intergenic (+14/‑318)	intB → / → insC‑6	KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA
RA	4,501,225	C→T	5.4%	intergenic (‑434/‑35)	yjgX ← / → yjgZ	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment/KpLE2 phage‑like element; uncharacterized protein YjgZ
RA	4,501,227	G→C	5.4%	intergenic (‑436/‑33)	yjgX ← / → yjgZ	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment/KpLE2 phage‑like element; uncharacterized protein YjgZ
RA	4,501,229	A→G	5.4%	intergenic (‑438/‑31)	yjgX ← / → yjgZ	KpLE2 phage‑like element; putative phosphoethanolamine transferase YjgX, N‑terminal fragment/KpLE2 phage‑like element; uncharacterized protein YjgZ
RA	4,502,105	A→G	5.2%	*443Q (TAA→CAA)	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,106	A→C	5.1%	A442A (GCT→GCG) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,107	G→T	5.2%	A442D (GCT→GAT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,502,108	C→T	5.1%	A442T (GCT→ACT) ‡	insG ←	KpLE2 phage‑like element; IS4 putative transposase
RA	4,515,328	T→G	8.6%	E450D (GAA→GAC) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,329	T→A	8.6%	E450V (GAA→GTA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,330	C→A	8.5%	E450* (GAA→TAA) ‡	fecA ←	ferric citrate outer membrane transporter
RA	4,515,968	C→G	9.5%	G237A (GGA→GCA)	fecA ←	ferric citrate outer membrane transporter
RA	4,515,972	A→T	9.3%	Y236N (TAC→AAC)	fecA ←	ferric citrate outer membrane transporter
RA	4,520,500	Δ1 bp	9.8%	intergenic (‑176/+171)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,520,504:1	+T	9.6%	intergenic (‑180/+167)	yjhU ← / ← yjhF	KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF
RA	4,531,098	C→A	5.2%	C185F (TGT→TTT)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,531,101:1	+A	5.0%	coding (551/1122 nt)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,531,118	Δ1 bp	7.3%	coding (534/1122 nt)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,531,122	T→G	7.3%	K177T (AAA→ACA)	sgcX ←	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain
RA	4,543,266	T→C	5.6%	V51A (GTT→GCT)	fimA →	type 1 fimbriae major subunit
RA	4,559,349	G→T	5.2%	L60I (CTC→ATC)	iadA ←	isoaspartyl dipeptidase
RA	4,559,350	G→C	5.2%	I59M (ATC→ATG) ‡	iadA ←	isoaspartyl dipeptidase
RA	4,559,351	A→C	5.2%	I59S (ATC→AGC) ‡	iadA ←	isoaspartyl dipeptidase
RA	4,566,645	T→A	5.8%	K201I (AAA→ATA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,566,646	T→A	5.8%	K201* (AAA→TAA) ‡	yjiN ←	DUF445 domain‑containing protein YjiN
RA	4,573,188	G→A	6.8%	V259I (GTA→ATA) ‡	yjiT →	putative uncharacterized protein YjiT
RA	4,573,189	T→C	6.8%	V259A (GTA→GCA) ‡	yjiT →	putative uncharacterized protein YjiT
RA	4,582,392	G→C	10.6%	P219P (CCC→CCG)	hsdM ←	type I restriction enzyme EcoKI methyltransferase component
RA	4,591,498	T→A	5.9%	intergenic (‑219/‑159)	btsT ← / → tsr	pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr
RA	4,591,499	C→T	5.9%	intergenic (‑220/‑158)	btsT ← / → tsr	pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr
RA	4,591,500	A→G	6.1%	intergenic (‑221/‑157)	btsT ← / → tsr	pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr
RA	4,591,501	T→A	6.1%	intergenic (‑222/‑156)	btsT ← / → tsr	pyruvate:H(+) symporter/methyl‑accepting chemotaxis protein Tsr
RA	4,603,201	A→T	6.6%	intergenic (‑343/‑276)	yjjP ← / → yjjQ	putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ
RA	4,603,203	A→T	7.4%	intergenic (‑345/‑274)	yjjP ← / → yjjQ	putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ
RA	4,608,604	C→G	8.5%	I140M (ATC→ATG)	rimI →	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA	4,608,607	C→G	8.4%	I141M (ATC→ATG)	rimI →	ribosomal‑protein‑S18‑alanine N‑acetyltransferase
RA	4,610,720	T→A	8.5%	L436Q (CTG→CAG)	prfC →	peptide chain release factor RF3
RA	4,612,329	A→G	5.0%	intergenic (+40/‑82)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,612,331	C→T	5.0%	intergenic (+42/‑80)	ytjA → / → yjjU	DUF1328 domain‑containing protein YtjA/putative patatin‑like phospholipase YjjU
RA	4,636,435	G→A	5.7%	A143A (GCG→GCA)	creB →	DNA‑binding transcriptional regulator CreB
RA	4,639,554	A→T	5.7%	intergenic (+24/+36)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,555	A→T	5.7%	intergenic (+25/+35)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,556	A→T	5.6%	intergenic (+26/+34)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA
RA	4,639,557	A→T	5.8%	intergenic (+27/+33)	creD → / ← arcA	putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1196273	1211446	15174	28 [27]	[25] 28	[icd]–[icdC]	[icd],ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,[icdC]
*	*	÷	NC_000913	2066276–2066628	2066628	1–353	28 [27]	[27] 29	[insH‑6]	[insH‑6]
*	*	÷	NC_000913	3621168–3622298	3653118–3652031	29734–31951	28 [26]	[26] 28	[rhsB]–[insH‑11]	[rhsB],yhhH,yhhI,yhhJ,rbbA,yhiI,yhiJ,yhiL,yhiM,yhiN,pitA,uspB,uspA,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,[insH‑11]

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 16653	NA (NA)	4 (0.050)	4/260	NT	NA	noncoding (1267/1345 nt)	IS186	repeat region
	?	NC_000913	= 16691	NA (NA)					noncoding (1305/1345 nt)	IS186	repeat region
*	?	NC_000913	= 27492	50 (0.610)	3 (0.040)	3/268	NT	5.6%	coding (200/915 nt)	rihC	ribonucleoside hydrolase RihC
	?	NC_000913	= 27536	52 (0.650)					coding (244/915 nt)	rihC	ribonucleoside hydrolase RihC
*	?	NC_000913	= 206853	47 (0.580)	3 (0.040)	3/258	NT	5.9%	coding (1728/3483 nt)	dnaE	DNA polymerase III subunit alpha
	?	NC_000913	= 206868	51 (0.670)					coding (1743/3483 nt)	dnaE	DNA polymerase III subunit alpha
*	?	NC_000913	= 213087	65 (0.800)	5 (0.060)	5/264	NT	7.1%	coding (757/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
	?	NC_000913	= 213119	69 (0.880)					coding (789/1299 nt)	tilS	tRNA(Ile)‑lysidine synthetase
*	?	NC_000913	224059 =	NA (NA)	24 (0.310)	12/260	NT	NA	noncoding (289/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	224082 =	NA (NA)					noncoding (312/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	= 224374	NA (NA)	4 (0.050)	4/260	NT	NA	noncoding (604/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	= 224403	NA (NA)					noncoding (633/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	225078 =	NA (NA)	34 (0.440)	20/260	NT	NA	noncoding (1308/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	225100 =	NA (NA)					noncoding (1330/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	225154 =	NA (NA)	16 (0.200)	13/264	NT	NA	noncoding (1384/1542 nt)	rrsH	16S ribosomal RNA
	?	NC_000913	225176 =	NA (NA)					noncoding (1406/1542 nt)	rrsH	16S ribosomal RNA
*	?	NC_000913	227034 =	NA (NA)	23 (0.300)	10/262	NT	NA	noncoding (1276/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	227053 =	NA (NA)					noncoding (1295/2904 nt)	rrlH	23S ribosomal RNA
*	?	NC_000913	= 227039	24 (0.290)	6 (0.080)	4/262	NT	20.7%	noncoding (1281/2904 nt)	rrlH	23S ribosomal RNA
	?	NC_000913	2727897 =	NA (NA)					noncoding (1288/2904 nt)	rrlG	23S ribosomal RNA
*	?	NC_000913	274347 =	NA (NA)	4 (0.050)	3/260	NT	NA	noncoding (803/1195 nt)	IS5	repeat region
	?	NC_000913	274410 =	NA (NA)					noncoding (740/1195 nt)	IS5	repeat region
*	?	NC_000913	274384 =	NA (NA)	5 (0.060)	5/268	NT	NA	noncoding (766/1195 nt)	IS5	repeat region
	?	NC_000913	274422 =	NA (NA)					noncoding (728/1195 nt)	IS5	repeat region
*	?	NC_000913	274620 =	NA (NA)	4 (0.050)	4/256	NT	NA	noncoding (530/1195 nt)	IS5	repeat region
	?	NC_000913	274663 =	NA (NA)					noncoding (487/1195 nt)	IS5	repeat region
*	?	NC_000913	285801 =	58 (0.710)	5 (0.060)	4/262	NT	8.6%	coding (407/1383 nt)	yagG	putative D‑xylonate transporter YagG
	?	NC_000913	285858 =	51 (0.660)					coding (464/1383 nt)	yagG	putative D‑xylonate transporter YagG
*	?	NC_000913	= 315646	NA (NA)	8 (0.100)	7/264	NT	NA	noncoding (418/1255 nt)	IS3	repeat region
	?	NC_000913	= 315665	NA (NA)					noncoding (437/1255 nt)	IS3	repeat region
*	?	NC_000913	= 334724	80 (0.980)	6 (0.080)	6/260	NT	7.4%	coding (299/498 nt)	yahC	uncharacterized protein YahC
	?	NC_000913	= 334736	75 (0.970)					coding (287/498 nt)	yahC	uncharacterized protein YahC
*	?	NC_000913	= 369705	58 (0.710)	3 (0.040)	3/260	NT	5.5%	coding (1095/1665 nt)	mhpA	putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase
	?	NC_000913	= 369727	48 (0.620)					coding (1117/1665 nt)	mhpA	putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase
*	?	NC_000913	381663 =	NA (NA)	9 (0.120)	6/260	NT	NA	noncoding (404/1331 nt)	IS2	repeat region
	?	NC_000913	381703 =	NA (NA)					noncoding (444/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381669	NA (NA)	14 (0.180)	10/260	NT	NA	noncoding (410/1331 nt)	IS2	repeat region
	?	NC_000913	= 381695	NA (NA)					noncoding (436/1331 nt)	IS2	repeat region
*	?	NC_000913	= 381689	NA (NA)	8 (0.110)	6/256	NT	NA	noncoding (430/1331 nt)	IS2	repeat region
	?	NC_000913	= 381743	NA (NA)					noncoding (484/1331 nt)	IS2	repeat region
*	?	NC_000913	382282 =	NA (NA)	9 (0.120)	9/262	NT	NA	noncoding (1023/1331 nt)	IS2	repeat region
	?	NC_000913	382313 =	NA (NA)					noncoding (1054/1331 nt)	IS2	repeat region
*	?	NC_000913	412077 =	71 (0.870)	5 (0.070)	5/258	NT	7.1%	coding (405/1185 nt)	araJ	putative transport protein AraJ
	?	NC_000913	412119 =	64 (0.840)					coding (363/1185 nt)	araJ	putative transport protein AraJ
*	?	NC_000913	= 505644	51 (0.630)	3 (0.040)	3/260	NT	5.6%	coding (731/1653 nt)	ushA	5'‑nucleotidase/UDP‑sugar hydrolase
	?	NC_000913	= 505675	52 (0.670)					coding (762/1653 nt)	ushA	5'‑nucleotidase/UDP‑sugar hydrolase
*	?	NC_000913	= 526508	NA (NA)	3 (0.040)	3/260	NT	38.7%	coding (3248/4281 nt)	rhsD	protein RhsD
	?	NC_000913	= 526599	5 (0.060)					coding (3339/4281 nt)	rhsD	protein RhsD
*	?	NC_000913	551831 =	52 (0.640)	3 (0.040)	3/256	NT	5.9%	coding (764/1068 nt)	purK	5‑(carboxyamino)imidazole ribonucleotide synthase
	?	NC_000913	551881 =	48 (0.630)					coding (714/1068 nt)	purK	5‑(carboxyamino)imidazole ribonucleotide synthase
*	?	NC_000913	580753 =	50 (0.610)	4 (0.060)	3/242	NT	8.2%	intergenic (‑308/‑81)	ylcI/nohD	DLP12 prophage; DUF3950 domain‑containing protein YlcI/DLP12 prophage; putative DNA‑packaging protein NohD
	?	NC_000913	580810 =	46 (0.640)					intergenic (‑365/‑24)	ylcI/nohD	DLP12 prophage; DUF3950 domain‑containing protein YlcI/DLP12 prophage; putative DNA‑packaging protein NohD
*	?	NC_000913	580794 =	48 (0.590)	5 (0.070)	3/242	NT	7.2%	intergenic (‑349/‑40)	ylcI/nohD	DLP12 prophage; DUF3950 domain‑containing protein YlcI/DLP12 prophage; putative DNA‑packaging protein NohD
	?	NC_000913	= 1636432	86 (1.200)					intergenic (‑65/‑324)	nohA/ynfO	Qin prophage; putative prophage DNA‑packaging protein NohA/Qin prophage; protein YnfO
*	?	NC_000913	= 665394	45 (0.550)	4 (0.050)	4/256	NT	8.3%	coding (920/1113 nt)	mrdB	SEDS family protein MrdB
	?	NC_000913	= 665423	46 (0.610)					coding (891/1113 nt)	mrdB	SEDS family protein MrdB
*	?	NC_000913	731941 =	43 (0.530)	7 (0.090)	7/272	NT	14.1%	coding (2359/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	3621600 =	NA (NA)					coding (2409/4236 nt)	rhsB	rhs element protein RhsB
*	?	NC_000913	= 731947	44 (0.540)	3 (0.040)	3/260	NT	6.0%	coding (2365/4194 nt)	rhsC	rhs element protein RhsC
	?	NC_000913	= 731983	53 (0.690)					coding (2401/4194 nt)	rhsC	rhs element protein RhsC
*	?	NC_000913	= 739779	58 (0.710)	4 (0.050)	4/256	NT	6.5%	coding (273/1419 nt)	phr	deoxyribodipyrimidine photolyase (photoreactivation)
	?	NC_000913	= 739800	60 (0.790)					coding (294/1419 nt)	phr	deoxyribodipyrimidine photolyase (photoreactivation)
*	?	NC_000913	765068 =	56 (0.690)	6 (0.080)	5/262	NT	9.9%	intergenic (+19/+85)	sucD/mngR	succinyl‑CoA synthetase subunit alpha/DNA‑binding transcriptional repressor MngR
	?	NC_000913	765107 =	56 (0.720)					intergenic (+58/+46)	sucD/mngR	succinyl‑CoA synthetase subunit alpha/DNA‑binding transcriptional repressor MngR
*	?	NC_000913	= 786737	NA (NA)	4 (0.050)	4/266	NT	NA	noncoding (34/35 nt)	other	REP70
	?	NC_000913	= 786771	NA (NA)					intergenic (+86/+72)	aroG/gpmA	3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase
*	?	NC_000913	797520 =	62 (0.760)	3 (0.040)	3/260	NT	5.2%	coding (967/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
	?	NC_000913	797584 =	51 (0.660)					coding (1031/1059 nt)	modC	molybdate ABC transporter ATP binding subunit
*	?	NC_000913	837797 =	58 (0.710)	5 (0.060)	5/262	NT	8.1%	coding (129/261 nt)	ybiJ	DUF1471 domain‑containing protein YbiJ
	?	NC_000913	837818 =	58 (0.750)					coding (108/261 nt)	ybiJ	DUF1471 domain‑containing protein YbiJ
*	?	NC_000913	= 895617	61 (0.750)	4 (0.050)	4/258	NT	6.5%	coding (627/1134 nt)	potG	putrescine ABC transporter ATP binding subunit
	?	NC_000913	= 895660	58 (0.760)					coding (670/1134 nt)	potG	putrescine ABC transporter ATP binding subunit
*	?	NC_000913	= 908335	67 (0.820)	4 (0.050)	4/266	NT	6.0%	coding (960/1002 nt)	ltaE	low‑specificity L‑threonine aldolase
	?	NC_000913	= 908380	60 (0.760)					coding (915/1002 nt)	ltaE	low‑specificity L‑threonine aldolase
*	?	NC_000913	= 924742	44 (0.540)	4 (0.050)	4/262	NT	7.8%	coding (1479/2277 nt)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA
	?	NC_000913	= 924764	52 (0.670)					coding (1501/2277 nt)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA
*	?	NC_000913	= 1072095	59 (0.720)	4 (0.050)	4/264	NT	6.5%	coding (65/387 nt)	rutC	putative aminoacrylate peracid reductase
	?	NC_000913	= 1072122	59 (0.750)					coding (38/387 nt)	rutC	putative aminoacrylate peracid reductase
*	?	NC_000913	1084367 =	45 (0.550)	3 (0.040)	3/262	NT	6.3%	coding (992/1272 nt)	efeB	heme‑containing peroxidase/deferrochelatase
	?	NC_000913	1084406 =	46 (0.590)					coding (1031/1272 nt)	efeB	heme‑containing peroxidase/deferrochelatase
*	?	NC_000913	1172447 =	53 (0.650)	3 (0.040)	3/268	NT	5.8%	coding (1518/3447 nt)	mfd	transcription‑repair coupling factor
	?	NC_000913	1172486 =	46 (0.580)					coding (1479/3447 nt)	mfd	transcription‑repair coupling factor
*	?	NC_000913	1269306 =	50 (0.610)	3 (0.040)	3/258	NT	6.8%	intergenic (‑31/‑17)	ldrA/rdlA	small toxic polypeptide LdrA/putative antisense RNA regulator of LdrA
	?	NC_000913	1270354 =	35 (0.460)					intergenic (‑9/‑39)	ldrC/rdlC	small toxic polypeptide LdrC/small regulatory antisense RNA RdlC
*	?	NC_000913	= 1269818	71 (0.870)	4 (0.050)	3/258	NT	5.5%	intergenic (‑8/‑40)	ldrB/rdlB	small toxic polypeptide LdrB/small regulatory antisense RNA RdlB
	?	NC_000913	= 1269840	70 (0.910)					intergenic (‑30/‑18)	ldrB/rdlB	small toxic polypeptide LdrB/small regulatory antisense RNA RdlB
*	?	NC_000913	1270346 =	35 (0.430)	4 (0.050)	4/258	NT	10.1%	intergenic (‑1/‑47)	ldrC/rdlC	small toxic polypeptide LdrC/small regulatory antisense RNA RdlC
	?	NC_000913	1270384 =	38 (0.500)					intergenic (‑39/‑9)	ldrC/rdlC	small toxic polypeptide LdrC/small regulatory antisense RNA RdlC
*	?	NC_000913	1294158 =	65 (0.800)	4 (0.050)	4/256	NT	6.5%	intergenic (+14/+268)	tdk/insZ	thymidine/deoxyuridine kinase/putative transposase InsZ
	?	NC_000913	1294195 =	54 (0.710)					intergenic (+51/+231)	tdk/insZ	thymidine/deoxyuridine kinase/putative transposase InsZ
*	?	NC_000913	1306130 =	54 (0.660)	5 (0.070)	3/258	NT	9.0%	coding (367/1005 nt)	oppF	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF
	?	NC_000913	1306207 =	50 (0.650)					coding (444/1005 nt)	oppF	murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF
*	?	NC_000913	1312264 =	71 (0.870)	7 (0.090)	6/254	NT	9.7%	intergenic (‑18/+87)	yciA/yciB	acyl‑CoA thioesterase/inner membrane protein
	?	NC_000913	1312301 =	65 (0.860)					intergenic (‑55/+50)	yciA/yciB	acyl‑CoA thioesterase/inner membrane protein
*	?	NC_000913	1360805 =	75 (0.920)	7 (0.090)	5/256	NT	8.6%	coding (104/1419 nt)	puuA	glutamate‑putrescine ligase
	?	NC_000913	1360853 =	79 (1.040)					coding (56/1419 nt)	puuA	glutamate‑putrescine ligase
*	?	NC_000913	1367114 =	62 (0.760)	5 (0.070)	5/258	NT	8.1%	coding (799/978 nt)	pspF	DNA‑binding transcriptional dual regulator PspF
	?	NC_000913	1367148 =	55 (0.720)					coding (765/978 nt)	pspF	DNA‑binding transcriptional dual regulator PspF
*	?	NC_000913	= 1456149	109 (1.340)	12 (0.150)	8/262	NT	10.8%	coding (225/498 nt)	paaD	phenylacetate degradation protein
	?	NC_000913	= 1456169	95 (1.220)					coding (245/498 nt)	paaD	phenylacetate degradation protein
*	?	NC_000913	1460515 =	164 (2.010)	10 (0.130)	8/260	NT	6.1%	coding (45/423 nt)	paaI	phenylacetyl‑CoA thioesterase
	?	NC_000913	1460544 =	155 (2.010)					coding (74/423 nt)	paaI	phenylacetyl‑CoA thioesterase
*	?	NC_000913	1463446 =	171 (2.100)	8 (0.110)	7/252	NT	5.0%	intergenic (+8/‑93)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
	?	NC_000913	1463480 =	144 (1.920)					intergenic (+42/‑59)	paaK/paaX	phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX
*	?	NC_000913	1465092 =	251 (3.080)	17 (0.230)	12/252	NT	6.7%	intergenic (+31/+73)	paaY/ynbG	2‑hydroxycyclohepta‑1,4,6‑triene‑1‑carboxyl‑CoA thioesterase/uncharacterized protein YnbG
	?	NC_000913	1465125 =	241 (3.220)					intergenic (+64/+40)	paaY/ynbG	2‑hydroxycyclohepta‑1,4,6‑triene‑1‑carboxyl‑CoA thioesterase/uncharacterized protein YnbG
*	?	NC_000913	= 1468681	NA (NA)	25 (0.450) +44 bp	8/186	NT	NA	noncoding (560/1331 nt)	IS2	repeat region
	?	NC_000913	1650843 =	NA (NA)					noncoding (1/706 nt)	IS2	repeat region
*	?	NC_000913	1570641 =	72 (0.880)	10 (0.140) +ATAACGTTGTAAA	8/248	NT	8.5%	intergenic (‑152/+4)	gadC/gadB	L‑glutamate:4‑aminobutyrate antiporter/glutamate decarboxylase B
	?	NC_000913	3666120 =	167 (2.050)					intergenic (‑310/+60)	gadX/gadA	DNA‑binding transcriptional dual regulator GadX/glutamate decarboxylase A
*	?	NC_000913	1612526 =	52 (0.640)	3 (0.040)	3/266	NT	5.5%	coding (726/927 nt)	glsB	glutaminase 2
	?	NC_000913	1612584 =	53 (0.670)					coding (668/927 nt)	glsB	glutaminase 2
*	?	NC_000913	= 1619402	63 (0.770)	5 (0.060)	4/266	NT	7.1%	coding (283/435 nt)	marR	DNA‑binding transcriptional repressor MarR
	?	NC_000913	= 1619430	70 (0.890)					coding (311/435 nt)	marR	DNA‑binding transcriptional repressor MarR
*	?	NC_000913	= 1625934	56 (0.690)	6 (0.080)	6/262	NT	10.3%	coding (1447/2046 nt)	dcp	peptidyl‑dipeptidase Dcp
	?	NC_000913	= 1625952	51 (0.660)					coding (1429/2046 nt)	dcp	peptidyl‑dipeptidase Dcp
*	?	NC_000913	= 1648437	75 (0.920)	4 (0.050)	4/260	NT	5.1%	intergenic (+96/‑71)	dicA/ydfA	DNA‑binding transcriptional dual regulator DicA/Qin prophage; DUF1391 domain‑containing protein YdfA
	?	NC_000913	= 1648462	77 (1.000)					intergenic (+121/‑46)	dicA/ydfA	DNA‑binding transcriptional dual regulator DicA/Qin prophage; DUF1391 domain‑containing protein YdfA
*	?	NC_000913	1740872 =	56 (0.690)	5 (0.060)	5/260	NT	8.2%	coding (962/1212 nt)	ydhC	putative transporter YdhC
	?	NC_000913	1740913 =	59 (0.760)					coding (1003/1212 nt)	ydhC	putative transporter YdhC
*	?	NC_000913	1745893 =	57 (0.700)	10 (0.130)	7/256	NT	17.1%	coding (235/1257 nt)	ydhQ	adhesin‑like autotransporter YdhQ
	?	NC_000913	1745928 =	44 (0.580)					coding (200/1257 nt)	ydhQ	adhesin‑like autotransporter YdhQ
*	?	NC_000913	= 1769673	34 (0.420)	3 (0.040)	3/262	NT	7.4%	coding (600/1113 nt)	ydiK	putative transporter YdiK
	?	NC_000913	= 1769704	43 (0.550)					coding (631/1113 nt)	ydiK	putative transporter YdiK
*	?	NC_000913	1837309 =	54 (0.660)	4 (0.050)	4/260	NT	7.3%	coding (98/1536 nt)	ynjC	putative ABC transporter membrane subunit YnjC
	?	NC_000913	1837341 =	51 (0.660)					coding (130/1536 nt)	ynjC	putative ABC transporter membrane subunit YnjC
*	?	NC_000913	1923294 =	76 (0.930)	6 (0.080)	6/254	NT	8.1%	noncoding (229/249 nt)	ryeA	small RNA RyeA
	?	NC_000913	1923334 =	65 (0.860)					intergenic (+20/+31)	ryeA/yebY	small RNA RyeA/DUF2511 domain‑containing protein YebY
*	?	NC_000913	= 1946034	115 (1.410)	7 (0.090)	7/258	NT	6.0%	intergenic (‑58/+81)	ruvA/yobI	Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI
	?	NC_000913	= 1946036	112 (1.460)					intergenic (‑60/+79)	ruvA/yobI	Holliday junction branch migration complex subunit RuvA/uncharacterized protein YobI
*	?	NC_000913	1947994 =	52 (0.640)	3 (0.040)	3/264	NT	6.1%	coding (158/741 nt)	yebC	putative transcriptional regulator YebC
	?	NC_000913	1948053 =	43 (0.550)					coding (99/741 nt)	yebC	putative transcriptional regulator YebC
*	?	NC_000913	= 1975167	62 (0.760)	5 (0.060)	4/262	NT	7.6%	coding (158/1965 nt)	cheA	chemotaxis protein CheA
	?	NC_000913	= 1975182	63 (0.810)					coding (143/1965 nt)	cheA	chemotaxis protein CheA
*	?	NC_000913	1981521 =	49 (0.600)	5 (0.060)	5/268	NT	9.4%	coding (92/1425 nt)	otsA	trehalose‑6‑phosphate synthase
	?	NC_000913	1981562 =	48 (0.600)					coding (51/1425 nt)	otsA	trehalose‑6‑phosphate synthase
*	?	NC_000913	= 2002048	NA (NA)	5 (0.060)	4/260	NT	NA	noncoding (20/29 nt)	other	REPv141b
	?	NC_000913	= 2002059	NA (NA)					noncoding (9/29 nt)	other	REPv141b
*	?	NC_000913	2042116 =	84 (1.030)	8 (0.110)	7/254	NT	10.1%	intergenic (+91/‑252)	zinT/yodB	metal‑binding protein ZinT/putative cytochrome
	?	NC_000913	2042149 =	65 (0.860)					intergenic (+124/‑219)	zinT/yodB	metal‑binding protein ZinT/putative cytochrome
*	?	NC_000913	= 2090970	83 (1.020)	6 (0.080)	5/262	NT	7.0%	coding (779/900 nt)	hisG	ATP phosphoribosyltransferase
	?	NC_000913	= 2090990	81 (1.040)					coding (799/900 nt)	hisG	ATP phosphoribosyltransferase
*	?	NC_000913	2180476 =	54 (0.660)	3 (0.040)	3/266	NT	5.7%	coding (382/1005 nt)	yegU	putative ADP‑ribosylglycohydrolase YegU
	?	NC_000913	2180511 =	46 (0.580)					coding (417/1005 nt)	yegU	putative ADP‑ribosylglycohydrolase YegU
*	?	NC_000913	2236519 =	NA (NA)	4 (0.050)	4/254	NT	NA	intergenic (+19/+224)	preA/mglC	NAD‑dependent dihydropyrimidine dehydrogenase subunit PreA/D‑galactose/methyl‑galactoside ABC transporter membrane subunit
	?	NC_000913	2236535 =	NA (NA)					noncoding (1/34 nt)	other	REP156a
*	?	NC_000913	2330390 =	64 (0.790)	4 (0.050)	4/256	NT	6.7%	pseudogene (4013/4605 nt)	yfaS	putative macroglobulin family protein, N‑terminal fragment
	?	NC_000913	2330449 =	52 (0.680)					pseudogene (3954/4605 nt)	yfaS	putative macroglobulin family protein, N‑terminal fragment
*	?	NC_000913	= 2375249	71 (0.870)	4 (0.050)	4/266	NT	5.2%	coding (714/963 nt)	menC	o‑succinylbenzoate synthase
	?	NC_000913	= 2375275	77 (0.970)					coding (688/963 nt)	menC	o‑succinylbenzoate synthase
*	?	NC_000913	2393130 =	NA (NA)	6 (0.080)	5/266	NT	NA	intergenic (‑89/+75)	nuoM/nuoL	NADH:quinone oxidoreductase subunit M/NADH:quinone oxidoreductase subunit L
	?	NC_000913	2393163 =	NA (NA)					noncoding (32/36 nt)	other	REP166
*	?	NC_000913	= 2414852	59 (0.720)	4 (0.050)	4/260	NT	6.7%	coding (106/2145 nt)	pta	phosphate acetyltransferase
	?	NC_000913	= 2414865	56 (0.730)					coding (119/2145 nt)	pta	phosphate acetyltransferase
*	?	NC_000913	2442508 =	61 (0.750)	5 (0.060)	5/264	NT	7.9%	coding (745/2007 nt)	mnmC	fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
	?	NC_000913	2442566 =	58 (0.740)					coding (803/2007 nt)	mnmC	fused 5‑methylaminomethyl‑2‑thiouridine‑forming methyltransferase and FAD‑dependent demodification enzyme
*	?	NC_000913	2569521 =	54 (0.660)	4 (0.050)	4/264	NT	7.8%	coding (817/837 nt)	eutJ	putative chaperonin, ethanolamine utilization protein
	?	NC_000913	2569558 =	42 (0.540)					coding (780/837 nt)	eutJ	putative chaperonin, ethanolamine utilization protein
*	?	NC_000913	2581648 =	NA (NA)	3 (0.040)	3/260	NT	NA	intergenic (+9/+86)	tktB/ypfG	transketolase 2/DUF1176 domain‑containing protein YpfG
	?	NC_000913	2581713 =	NA (NA)					noncoding (15/19 nt)	other	REP179c
*	?	NC_000913	2590079 =	57 (0.700)	5 (0.060)	5/266	NT	8.6%	coding (2485/3114 nt)	acrD	multidrug efflux pump RND permease AcrD
	?	NC_000913	2590108 =	51 (0.650)					coding (2514/3114 nt)	acrD	multidrug efflux pump RND permease AcrD
*	?	NC_000913	2683325 =	59 (0.720)	6 (0.080)	5/258	NT	10.1%	coding (463/1194 nt)	yphH	putative DNA‑binding transcriptional regulator, NAGC‑like
	?	NC_000913	2683372 =	51 (0.670)					coding (510/1194 nt)	yphH	putative DNA‑binding transcriptional regulator, NAGC‑like
*	?	NC_000913	2727891 =	NA (NA)	22 (0.280)	13/262	NT	NA	noncoding (1294/2904 nt)	rrlG	23S ribosomal RNA
	?	NC_000913	2727910 =	NA (NA)					noncoding (1275/2904 nt)	rrlG	23S ribosomal RNA
*	?	NC_000913	2866283 =	66 (0.810)	4 (0.050)	4/260	NT	6.3%	coding (1183/1365 nt)	ygbN	putative transporter YgbN
	?	NC_000913	2866323 =	57 (0.740)					coding (1223/1365 nt)	ygbN	putative transporter YgbN
*	?	NC_000913	2887529 =	75 (0.920)	4 (0.050)	4/260	NT	5.6%	intergenic (+121/+49)	sokX/cysH	small RNA SokX/phosphoadenosine phosphosulfate reductase
	?	NC_000913	2887561 =	65 (0.840)					intergenic (+153/+17)	sokX/cysH	small RNA SokX/phosphoadenosine phosphosulfate reductase
*	?	NC_000913	2919605 =	45 (0.550)	6 (0.080)	5/262	NT	13.2%	coding (1142/1341 nt)	gudX	glucarate dehydratase‑related protein
	?	NC_000913	2919645 =	36 (0.460)					coding (1102/1341 nt)	gudX	glucarate dehydratase‑related protein
*	?	NC_000913	3066778 =	76 (0.930)	6 (0.080)	5/266	NT	7.8%	coding (396/897 nt)	ygfI	putative LysR‑type DNA‑binding transcriptional regulator YgfI
	?	NC_000913	3066803 =	68 (0.860)					coding (371/897 nt)	ygfI	putative LysR‑type DNA‑binding transcriptional regulator YgfI
*	?	NC_000913	= 3136627	121 (1.490)	16 (0.220)	11/244	NT	12.5%	intergenic (‑256/+36)	pitB/gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
	?	NC_000913	= 3136632	117 (1.620)					intergenic (‑261/+31)	pitB/gss	metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase
*	?	NC_000913	= 3208474	41 (0.500)	3 (0.040)	3/266	NT	7.2%	coding (451/1464 nt)	ttdT	L‑tartrate:succinate antiporter
	?	NC_000913	= 3208513	38 (0.480)					coding (490/1464 nt)	ttdT	L‑tartrate:succinate antiporter
*	?	NC_000913	3240002 =	71 (0.870)	6 (0.080)	5/264	NT	8.6%	coding (59/1245 nt)	sstT	serine/threonine:Na(+) symporter
	?	NC_000913	3240025 =	59 (0.750)					coding (82/1245 nt)	sstT	serine/threonine:Na(+) symporter
*	?	NC_000913	= 3304484	NA (NA)	4 (0.050)	4/252	NT	NA	intergenic (+29/+89)	yhbW/mtr	putative luciferase‑like monooxygenase/tryptophan:H(+) symporter Mtr
	?	NC_000913	= 3304553	NA (NA)					intergenic (+98/+20)	yhbW/mtr	putative luciferase‑like monooxygenase/tryptophan:H(+) symporter Mtr
*	?	NC_000913	= 3411602	57 (0.700)	5 (0.070)	4/252	NT	8.4%	intergenic (+35/‑51)	fis/yhdJ	DNA‑binding transcriptional dual regulator Fis/DNA adenine methyltransferase
	?	NC_000913	= 3411616	57 (0.760)					intergenic (+49/‑37)	fis/yhdJ	DNA‑binding transcriptional dual regulator Fis/DNA adenine methyltransferase
*	?	NC_000913	= 3467996	57 (0.700)	4 (0.050)	4/264	NT	6.4%	coding (1858/2694 nt)	chiA	endochitinase
	?	NC_000913	= 3468011	63 (0.800)					coding (1843/2694 nt)	chiA	endochitinase
*	?	NC_000913	3470277 =	NA (NA)	9 (0.120)	5/260	NT	NA	coding (1053/1185 nt)	tufA	translation elongation factor Tu 1
	?	NC_000913	3470311 =	NA (NA)					coding (1019/1185 nt)	tufA	translation elongation factor Tu 1
*	?	NC_000913	= 3542317	45 (0.550)	5 (0.060)	5/262	NT	9.5%	coding (1911/2322 nt)	feoB	Fe(2(+)) transporter FeoB
	?	NC_000913	= 3542340	52 (0.670)					coding (1934/2322 nt)	feoB	Fe(2(+)) transporter FeoB
*	?	NC_000913	3578000 =	92 (1.130)	6 (0.080)	6/264	NT	6.1%	coding (727/996 nt)	gntR	DNA‑binding transcriptional repressor GntR
	?	NC_000913	3578037 =	96 (1.220)					coding (690/996 nt)	gntR	DNA‑binding transcriptional repressor GntR
*	?	NC_000913	3588718 =	56 (0.690)	6 (0.080)	6/268	NT	9.0%	coding (463/1071 nt)	ugpC	sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit
	?	NC_000913	3588775 =	66 (0.830)					coding (406/1071 nt)	ugpC	sn‑glycerol 3‑phosphate ABC transporter ATP binding subunit
*	?	NC_000913	3593375 =	57 (0.700)	4 (0.050)	3/260	NT	6.6%	coding (63/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
	?	NC_000913	3593406 =	60 (0.780)					coding (32/714 nt)	livF	branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
*	?	NC_000913	3601256 =	64 (0.790)	5 (0.060)	5/262	NT	8.4%	coding (831/1059 nt)	ftsX	cell division protein FtsX
	?	NC_000913	3601282 =	48 (0.620)					coding (805/1059 nt)	ftsX	cell division protein FtsX
*	?	NC_000913	3602279 =	74 (0.910)	4 (0.050)	4/264	NT	5.5%	coding (469/669 nt)	ftsE	cell division protein FtsE
	?	NC_000913	3602333 =	67 (0.850)					coding (415/669 nt)	ftsE	cell division protein FtsE
*	?	NC_000913	3665737 =	166 (2.040)	14 (0.180)	11/260	NT	8.4%	coding (74/825 nt)	gadX	DNA‑binding transcriptional dual regulator GadX
	?	NC_000913	3665756 =	149 (1.930)					coding (55/825 nt)	gadX	DNA‑binding transcriptional dual regulator GadX
*	?	NC_000913	= 3688805	71 (0.870)	10 (0.130)	8/260	NT	12.4%	coding (369/3474 nt)	bcsC	cellulose biosynthesis protein BcsC
	?	NC_000913	= 3688833	74 (0.960)					coding (341/3474 nt)	bcsC	cellulose biosynthesis protein BcsC
*	?	NC_000913	= 3698677	86 (1.060)	6 (0.080)	5/268	NT	6.9%	coding (464/1680 nt)	bcsG	cellulose phosphoethanolamine transferase
	?	NC_000913	= 3698702	77 (0.970)					coding (489/1680 nt)	bcsG	cellulose phosphoethanolamine transferase
*	?	NC_000913	= 3741405	83 (1.020)	7 (0.090)	6/264	NT	7.7%	coding (178/474 nt)	ysaA	putative electron transport protein YsaA
	?	NC_000913	= 3741430	88 (1.120)					coding (153/474 nt)	ysaA	putative electron transport protein YsaA
*	?	NC_000913	3765526 =	47 (0.580)	3 (0.040)	3/264	NT	6.5%	coding (3344/4134 nt)	rhsA	rhs element protein RhsA
	?	NC_000913	3765552 =	41 (0.520)					coding (3370/4134 nt)	rhsA	rhs element protein RhsA
*	?	NC_000913	= 3831416	148 (1.820)	8 (0.100)	6/264	NT	5.3%	coding (960/1710 nt)	yicH	AsmA famly protein YicH
	?	NC_000913	= 3831425	143 (1.820)					coding (969/1710 nt)	yicH	AsmA famly protein YicH
*	?	NC_000913	3842398 =	154 (1.890)	8 (0.110)	7/250	NT	5.7%	coding (5/453 nt)	yicN	conserved protein YicN
	?	NC_000913	3842433 =	125 (1.680)					intergenic (‑31/+22)	yicN/adeQ	conserved protein YicN/adenine transporter
*	?	NC_000913	= 3844365	98 (1.200)	7 (0.090)	6/260	NT	6.9%	coding (402/1767 nt)	adeD	adenine deaminase
	?	NC_000913	= 3844391	96 (1.240)					coding (428/1767 nt)	adeD	adenine deaminase
*	?	NC_000913	= 3854888	110 (1.350)	7 (0.090)	6/256	NT	6.0%	coding (967/1185 nt)	emrD	multidrug efflux pump EmrD
	?	NC_000913	= 3854930	116 (1.530)					coding (1009/1185 nt)	emrD	multidrug efflux pump EmrD
*	?	NC_000913	= 3857685	130 (1.600)	7 (0.090)	6/258	NT	5.3%	coding (720/1494 nt)	yidJ	putative sulfatase/phosphatase
	?	NC_000913	= 3857715	128 (1.670)					coding (690/1494 nt)	yidJ	putative sulfatase/phosphatase
*	?	NC_000913	= 3869187	128 (1.570)	10 (0.130)	8/262	NT	7.6%	coding (123/1248 nt)	yidR	DUF3748 domain‑containing galacturonate catabolism protein YidR
	?	NC_000913	= 3869215	122 (1.570)					coding (95/1248 nt)	yidR	DUF3748 domain‑containing galacturonate catabolism protein YidR
*	?	NC_000913	3910357 =	116 (1.420)	6 (0.080)	6/264	NT	5.1%	coding (42/960 nt)	pstC	phosphate ABC transporter membrane subunit PstC
	?	NC_000913	3910380 =	112 (1.430)					coding (19/960 nt)	pstC	phosphate ABC transporter membrane subunit PstC
*	?	NC_000913	3930611 =	140 (1.720)	10 (0.130)	7/260	NT	6.7%	coding (483/1497 nt)	ravA	regulatory ATPase RavA
	?	NC_000913	3930652 =	144 (1.860)					coding (442/1497 nt)	ravA	regulatory ATPase RavA
*	?	NC_000913	3943544 =	8 (0.100)	11 (0.140)	3/270	NT	58.3%	intergenic (+34/‑160)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA
	?	NC_000913	4037399 =	NA (NA)					intergenic (+64/‑120)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA
*	?	NC_000913	= 3943635	NA (NA)	19 (0.250)	15/260	NT	20.2%	intergenic (+125/‑69)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA
	?	NC_000913	= 4037446	79 (0.970)					intergenic (+111/‑73)	alaT/rrlA	tRNA‑Ala/23S ribosomal RNA
*	?	NC_000913	= 3944991	NA (NA)	6 (0.080)	4/262	NT	8.8%	noncoding (1288/2904 nt)	rrlC	23S ribosomal RNA
	?	NC_000913	= 4038798	65 (0.800)					noncoding (1280/2905 nt)	rrlA	23S ribosomal RNA
*	?	NC_000913	3960717 =	128 (1.570)	7 (0.090)	5/260	NT	5.5%	coding (41/2022 nt)	rep	ATP‑dependent DNA helicase Rep
	?	NC_000913	3960760 =	119 (1.540)					coding (84/2022 nt)	rep	ATP‑dependent DNA helicase Rep
*	?	NC_000913	= 3967703	149 (1.830)	11 (0.150)	9/250	NT	7.4%	intergenic (+27/‑213)	rho/rfe	transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
	?	NC_000913	= 3967707	139 (1.870)					intergenic (+31/‑209)	rho/rfe	transcription termination factor Rho/UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
*	?	NC_000913	= 3998036	106 (1.300)	7 (0.090)	5/270	NT	6.6%	coding (54/2163 nt)	uvrD	ssDNA translocase and dsDNA helicase ‑ DNA helicase II
	?	NC_000913	= 3998077	94 (1.170)					coding (95/2163 nt)	uvrD	ssDNA translocase and dsDNA helicase ‑ DNA helicase II
*	?	NC_000913	4020306 =	137 (1.680)	7 (0.090)	6/266	NT	5.2%	coding (81/1641 nt)	ubiB	ubiquinone biosynthesis protein UbiB
	?	NC_000913	4020348 =	122 (1.540)					coding (123/1641 nt)	ubiB	ubiquinone biosynthesis protein UbiB
*	?	NC_000913	= 4040727	96 (1.180)	6 (0.080)	5/256	NT	6.1%	intergenic (+91/+179)	rrfA/mobB	5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
	?	NC_000913	= 4040732	96 (1.260)					intergenic (+96/+174)	rrfA/mobB	5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
*	?	NC_000913	= 4040741	105 (1.290)	12 (0.160)	11/256	NT	9.5%	intergenic (+105/+165)	rrfA/mobB	5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein
	?	NC_000913	= 4171838	131 (1.720)					intergenic (+82/‑219)	rrfB/murB	5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase
*	?	NC_000913	4205219 =	118 (1.450)	9 (0.120)	8/260	NT	7.3%	coding (713/1290 nt)	purD	phosphoribosylamine‑‑glycine ligase
	?	NC_000913	4205254 =	115 (1.490)					coding (678/1290 nt)	purD	phosphoribosylamine‑‑glycine ligase
*	?	NC_000913	= 4205225	120 (1.470)	10 (0.130)	6/260	NT	8.0%	coding (707/1290 nt)	purD	phosphoribosylamine‑‑glycine ligase
	?	NC_000913	= 4205246	115 (1.490)					coding (686/1290 nt)	purD	phosphoribosylamine‑‑glycine ligase
*	?	NC_000913	= 4246671	152 (1.870)	11 (0.140)	9/264	NT	7.2%	intergenic (‑252/‑113)	malE/malK	maltose ABC transporter periplasmic binding protein/maltose ABC transporter ATP binding subunit
	?	NC_000913	= 4246695	139 (1.770)					intergenic (‑276/‑89)	malE/malK	maltose ABC transporter periplasmic binding protein/maltose ABC transporter ATP binding subunit
*	?	NC_000913	= 4271029	158 (1.940)	12 (0.160)	10/256	NT	7.3%	intergenic (+15/+20)	yjbR/uvrA	PF04237 family protein YjbR/excision nuclease subunit A
	?	NC_000913	= 4271034	159 (2.090)					intergenic (+20/+15)	yjbR/uvrA	PF04237 family protein YjbR/excision nuclease subunit A
*	?	NC_000913	4314079 =	145 (1.780)	9 (0.110)	7/266	NT	6.2%	coding (212/330 nt)	yjdP	protein YjdP
	?	NC_000913	4314151 =	132 (1.670)					coding (284/330 nt)	yjdP	protein YjdP
*	?	NC_000913	4320612 =	130 (1.600)	15 (0.190)	10/264	NT	10.6%	coding (52/1065 nt)	phnI	carbon‑phosphorus lyase core complex subunit PhnI
	?	NC_000913	4320644 =	127 (1.620)					coding (20/1065 nt)	phnI	carbon‑phosphorus lyase core complex subunit PhnI
*	?	NC_000913	4335640 =	157 (1.930)	10 (0.140)	8/246	NT	6.7%	intergenic (‑50/+54)	eptA/adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
	?	NC_000913	4335670 =	136 (1.860)					intergenic (‑80/+24)	eptA/adiC	phosphoethanolamine transferase EptA/arginine:agmatine antiporter
*	?	NC_000913	4356433 =	149 (1.830)	10 (0.130)	9/250	NT	7.2%	intergenic (‑22/+37)	dtpC/cadA	dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1
	?	NC_000913	4356459 =	123 (1.660)					intergenic (‑48/+11)	dtpC/cadA	dipeptide/tripeptide:H(+) symporter DtpC/lysine decarboxylase 1
*	?	NC_000913	4389174 =	133 (1.630)	10 (0.130)	8/260	NT	7.8%	coding (197/3324 nt)	mscM	miniconductance mechanosensitive channel MscM
	?	NC_000913	4389211 =	109 (1.410)					coding (160/3324 nt)	mscM	miniconductance mechanosensitive channel MscM
*	?	NC_000913	4415962 =	NA (NA)	5 (0.060)	5/262	NT	NA	noncoding (31/34 nt)	other	REP332
	?	NC_000913	4415992 =	NA (NA)					noncoding (1/34 nt)	other	REP332
*	?	NC_000913	= 4477269	248 (3.050)	22 (0.290)	12/254	NT	8.8%	intergenic (+18/+38)	yjgL/argI	protein YjgL/ornithine carbamoyltransferase ArgI
	?	NC_000913	= 4477280	227 (3.010)					intergenic (+29/+27)	yjgL/argI	protein YjgL/ornithine carbamoyltransferase ArgI
*	?	NC_000913	4524790 =	63 (0.770)	4 (0.050)	4/254	NT	6.9%	coding (221/906 nt)	yjhH	KpLE2 phage‑like element; putative 2‑dehydro‑3‑deoxy‑D‑pentonate aldolase
	?	NC_000913	4524835 =	49 (0.650)					coding (176/906 nt)	yjhH	KpLE2 phage‑like element; putative 2‑dehydro‑3‑deoxy‑D‑pentonate aldolase
*	?	NC_000913	4531892 =	79 (0.970)	7 (0.090)	7/256	NT	8.5%	intergenic (‑241/+545)	sgcX/yjhP	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain/KpLE2 phage‑like element; putative methyltransferase YjhP
	?	NC_000913	4531924 =	77 (1.010)					intergenic (‑273/+513)	sgcX/yjhP	KpLE2 phage‑like element; putative endoglucanase with Zn‑dependent exopeptidase domain/KpLE2 phage‑like element; putative methyltransferase YjhP
*	?	NC_000913	= 4565320	59 (0.720)	4 (0.050)	4/260	NT	6.7%	coding (531/1152 nt)	yjiM	putative dehydratase subunit
	?	NC_000913	= 4565347	55 (0.710)					coding (504/1152 nt)	yjiM	putative dehydratase subunit
*	?	NC_000913	4636324 =	60 (0.740)	6 (0.080)	4/260	NT	9.5%	coding (318/690 nt)	creB	DNA‑binding transcriptional regulator CreB
	?	NC_000913	4636375 =	58 (0.750)					coding (369/690 nt)	creB	DNA‑binding transcriptional regulator CreB