breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Predicted mutations | ||||||
---|---|---|---|---|---|---|
evidence | position | mutation | freq | annotation | gene | description |
RA | 5,144 | G→A | 94.3% | intergenic (+124/‑90) | thrC → / → yaaX | L‑threonine synthase/DUF2502 family putative periplasmic protein |
RA | 10,444 | G→T | 100% | F17L (TTC→TTA) | satP ← | succinate‑acetate transporter |
RA | 12,901 | G→A | 100% | D247N (GAT→AAT) | dnaK → | chaperone Hsp70, with co‑chaperone DnaJ |
RA | 15,125 | G→T | 18.4% | D320Y (GAT→TAT) | dnaJ → | chaperone Hsp40, DnaK co‑chaperone |
RA | 25,546 | G→T | 89.7% | D114Y (GAC→TAC) | lspA → | prolipoprotein signal peptidase (signal peptidase II) |
RA | 28,818 | G→T | 7.0% | D149Y (GAC→TAC) | dapB → | dihydrodipicolinate reductase |
RA | 29,139 | G→T | 93.6% | G256C (GGT→TGT) | dapB → | dihydrodipicolinate reductase |
RA | 41,442 | G→T | 28.1% | R164S (CGC→AGC) | caiT ← | putative transporter |
RA | 42,150 | G→A | 43.2% | intergenic (‑219/‑253) | caiT ← / → fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
RA | 49,840 | G→T | 94.2% | A6A (GCG→GCT) | folA → | dihydrofolate reductase |
RA | 51,352 | A→T | 25.2% | G85G (GGT→GGA) | apaG ← | protein associated with Co2+ and Mg2+ efflux |
RA | 55,590 | G→T | 88.7% | T507K (ACG→AAG) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 56,677 | G→T | 94.8% | R145S (CGC→AGC) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
RA | 68,546 | C→A | 8.3% | R237S (CGC→AGC) | yabI → | DedA family inner membrane protein |
RA | 76,821 | G→T | 42.0% | G177G (GGC→GGA) | leuC ← | 3‑isopropylmalate dehydratase large subunit |
RA | 80,123 | C→T | 89.7% | G25S (GGC→AGC) | leuL ← | leu operon leader peptide |
RA | 80,491 | G→T | 12.1% | intergenic (‑296/‑364) | leuL ← / → leuO | leu operon leader peptide/global transcription factor |
RA | 81,562 | C→A | 91.8% | I236I (ATC→ATA) | leuO → | global transcription factor |
RA | 85,890 | G→T | 33.8% | intergenic (+371/‑231) | cra → / → mraZ | transcriptional repressor‑activator for carbon metabolism/RsmH methytransferase inhibitor |
RA | 92,294 | C→A | 24.7% | R386R (CGC→CGA) | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
RA | 92,728 | G→T | 7.5% | L80L (CTG→CTT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 93,391 | G→T | 42.6% | T301T (ACG→ACT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
RA | 97,521 | C→A | 100% | A90A (GCC→GCA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 97,893 | T→A | 29.3% | F214L (TTT→TTA) | murC → | UDP‑N‑acetylmuramate:L‑alanine ligase |
RA | 103,467 | G→T | 94.3% | D142Y (GAT→TAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
RA | 104,561 | G→T | 94.0% | A124S (GCG→TCG) | secM → | regulator of secA translation |
RA | 104,582 | A→T | 35.6% | T131S (ACG→TCG) | secM → | regulator of secA translation |
RA | 109,800 | A→T | 5.4% | intergenic (‑94/‑131) | coaE ← / → guaC | dephospho‑CoA kinase/GMP reductase |
RA | 110,883 | A→T | 29.0% | Y318F (TAC→TTC) | guaC → | GMP reductase |
RA | 118,873 | G→T | 100% | D99Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
RA | 132,639 | T→A | 11.2% | T105S (ACG→TCG) | speE ← | spermidine synthase (putrescine aminopropyltransferase) |
RA | 134,028 | G→T | 47.8% | A153A (GCG→GCT) | cueO → | multicopper oxidase (laccase) |
RA | 134,652 | G→T | 23.9% | M361I (ATG→ATT) | cueO → | multicopper oxidase (laccase) |
RA | 142,460 | T→A | 93.0% | F298Y (TTC→TAC) | yadE → | putative polysaccharide deacetylase lipoprotein |
RA | 148,264 | G→T | 6.4% | A152E (GCA→GAA) | yadL ← | putative fimbrial‑like adhesin protein |
RA | 153,472 | G→T | 100% | intergenic (‑102/+268) | yadN ← / ← folK | putative fimbrial‑like adhesin protein/2‑amino‑4‑hydroxy‑6‑hydroxymethyldihyropteridine pyrophosphokinase |
RA | 158,287 | C→A | 94.9% | D78Y (GAC→TAC) | ligT ← | 2'‑5' RNA ligase |
RA | 161,068 | A→C | 39.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
RA | 172,107 | G→T | 29.2% | E172* (GAA→TAA) | clcA → | H(+)/Cl(‑) exchange transporter |
RA | 172,979 | G→T | 21.4% | A462A (GCG→GCT) | clcA → | H(+)/Cl(‑) exchange transporter |
RA | 176,783 | G→T | 49.9% | D354Y (GAT→TAT) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 176,864 | C→T | 24.9% | L381L (CTA→TTA) | dgt → | deoxyguanosine triphosphate triphosphohydrolase |
RA | 179,424 | G→T | 6.2% | D159Y (GAT→TAT) | cdaR → | carbohydrate diacid regulon transcriptional regulator; autoregulator |
RA | 183,669 | C→A | 27.4% | R490L (CGC→CTC) | glnD ← | uridylyltransferase |
RA | 186,279 | A→T | 35.2% | noncoding (81/136 nt) | tff → | novel sRNA, function unknown |
RA | 201,962 | A→T | 41.2% | D117V (GAT→GTT) | dnaE → | DNA polymerase III alpha subunit |
RA | 202,839 | G→T | 13.4% | E409D (GAG→GAT) | dnaE → | DNA polymerase III alpha subunit |
RA | 215,833 | G→T | 26.4% | N83K (AAC→AAA) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
RA | 217,932 | A→C | 46.2% | I59M (ATT→ATG) | metI ← | DL‑methionine transporter subunit |
RA | 230,579 | C→T | 100% | E231K (GAA→AAA) | gloB ← | hydroxyacylglutathione hydrolase |
RA | 232,860 | G→T | 94.6% | D103Y (GAT→TAT) | dnaQ → | DNA polymerase III epsilon subunit |
RA | 233,931 | G→A | 33.8% | S37N (AGT→AAT) | yafT → | lipoprotein |
RA | 234,994 | G→T | 13.4% | S77* (TCA→TAA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,010 | G→T | 15.8% | L72I (CTT→ATT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,019 | C→A | 24.3% | V69L (GTA→TTA) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 235,022 | G→T | 18.9% | H68N (CAT→AAT) | ykfM ← | lethality reduction protein, putative inner membrane protein |
RA | 236,234 | A→T | 44.4% | V148E (GTG→GAG) | yafV ← | putative NAD(P)‑binding C‑N hydrolase family amidase |
RA | 238,195 | G→T | 100% | V532V (GTC→GTA) | fadE ← | acyl coenzyme A dehydrogenase |
RA | 250,880 | G→T | 36.4% | P442T (CCG→ACG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
RA | 262,114 | C→A | 41.3% | D51Y (GAT→TAT) | yafY ← | lipoprotein, inner membrane; overproduction stimulates degP expression; CP4‑6 prophage |
RA | 274,735 | A→T | 90.5% | pseudogene (138/348 nt) | afuB ← | pseudogene, CP4‑6 prophage; ABC transporter permease family;Phage or Prophage Related |
RA | 279,334 | C→A | 25.0% | I141I (ATC→ATA) | yagF → | CP4‑6 prophage; dehydratase family protein |
RA | 283,636 | A→C | 6.8% | Q379H (CAA→CAC) | yagH → | CP4‑6 prophage; putative xylosidase/arabinosidase |
RA | 287,667 | G→T | 12.8% | pseudogene (553/828 nt) | yagJ → | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related |
RA | 291,453 | A→T | 29.1% | L452* (TTA→TAA) | intF ← | CP4‑6 prophage; putative phage integrase |
RA | 295,092 | G→T | 27.2% | G518G (GGC→GGA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 295,695 | T→G | 21.4% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
RA | 302,428 | G→T | 29.6% | P34Q (CCG→CAG) | ecpD ← | polymerized tip adhesin of ECP fibers |
RA | 307,454 | G→A | 8.5% | intergenic (‑407/‑369) | ecpR ← / → ykgL | putative transcriptional regulator for the ecp operon/uncharacterized protein |
RA | 312,532 | G→A | 93.3% | pseudogene (349/684 nt) | ykgA ← | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein |
RA | 314,027 | C→T | 6.9% | E2K (GAA→AAA) | rclC ← | reactive chlorine species (RCS) stress resistance inner membrane protein |
RA | 317,205 | G→A | 40.3% | intergenic (+413/‑114) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
RA | 320,920 | G→A | 100% | S52S (AGC→AGT) | ykgH ← | putative inner membrane protein |
RA | 321,223 | C→A | 92.5% | intergenic (‑148/+65) | ykgH ← / ← betA | putative inner membrane protein/choline dehydrogenase, a flavoprotein |
RA | 326,385 | G→T | 29.2% | P404P (CCG→CCT) | betT → | choline transporter of high affinity |
RA | 329,887 | G→T | 6.6% | I86I (ATC→ATA) | yahB ← | putative DNA‑bindng transcriptional regulator |
RA | 344,800 | G→T | 93.0% | E136D (GAG→GAT) | prpB → | 2‑methylisocitrate lyase |
RA | 345,384 | G→C | 5.1% | intergenic (+101/‑339) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 345,428 | T→C | 10.2% | intergenic (+145/‑295) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
RA | 347,382 | G→T | 38.1% | E153* (GAA→TAA) | prpD → | 2‑methylcitrate dehydratase |
RA | 360,114 | A→T | 5.5% | intergenic (‑48/+547) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,173 | C→A | 7.6% | intergenic (‑107/+488) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,181 | G→C | 7.1% | intergenic (‑115/+480) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
RA | 360,752 | A→G | 100% | V331A (GTG→GCG) | lacI ← | DNA‑binding transcriptional repressor |
RA | 361,806 | G→A | 100% | intergenic (‑63/+14) | lacI ← / ← mhpR | DNA‑binding transcriptional repressor/mhp operon transcriptional activator |
RA | 362,159 | G→T | 94.3% | I165I (ATC→ATA) | mhpR ← | mhp operon transcriptional activator |
RA | 368,518 | A→C | 6.0% | R48R (AGA→CGA) | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
RA | 385,815 | G→T | 50.9% | pseudogene (109/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 386,569 | C→A | 8.6% | pseudogene (863/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
RA | 394,744 | G→T | 18.6% | R16S (CGC→AGC) | yaiY ← | DUF2755 family inner membrane protein |
RA | 396,883 | A→G | 85.2% | Q14Q (CAA→CAG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
RA | 397,959 | G→A | 37.6% | A253T (GCG→ACG) | phoA → | bacterial alkaline phosphatase |
RA | 402,340 | G→T | 100% | V160V (GTG→GTT) | aroL → | shikimate kinase II |
RA | 406,075 | C→A | 94.3% | P159Q (CCG→CAG) | mak → | manno(fructo)kinase |
RA | 411,027 | G→T | 92.8% | L61L (CTC→CTA) | sbcC ← | exonuclease, dsDNA, ATP‑dependent |
RA | 414,179 | G→T | 17.8% | D279Y (GAT→TAT) | phoR → | sensory histidine kinase in two‑component regulatory system with PhoB |
RA | 421,799 | C→A | 88.9% | I69I (ATC→ATA) | tgt → | tRNA‑guanine transglycosylase |
RA | 423,068 | C→A | 10.0% | A109E (GCG→GAG) | yajC → | SecYEG protein translocase auxillary subunit |
RA | 425,143 | G→T | 51.4% | T61T (ACG→ACT) | secF → | SecYEG protein translocase auxillary subunit |
RA | 427,603 | C→T | 22.9% | intergenic (‑134/+165) | tsx ← / ← yajI | nucleoside channel, receptor of phage T6 and colicin K/putative lipoprotein |
RA | 433,551 | G→T | 93.2% | S14Y (TCC→TAC) | yajO ← | 2‑carboxybenzaldehyde reductase |
RA | 434,663 | A→C | 92.0% | I324S (ATC→AGC) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 435,336 | G→T | 100% | Q100K (CAG→AAG) | dxs ← | 1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
RA | 437,672 | T→A | 90.0% | V223E (GTG→GAG) | thiI → | tRNA s(4)U8 sulfurtransferase |
RA | 441,811 | A→C | 10.5% | I104M (ATT→ATG) | yajR ← | putative transporter |
RA | 444,489 | G→A | 92.2% | R537C (CGT→TGT) | cyoB ← | cytochrome o ubiquinol oxidase subunit I |
RA | 446,369 | T→G | 47.0% | Q233P (CAG→CCG) | cyoA ← | cytochrome o ubiquinol oxidase subunit II |
RA | 450,290 | G→A | 100% | intergenic (+45/‑299) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 451,853 | C→A | 30.5% | T422N (ACC→AAC) | tig → | peptidyl‑prolyl cis/trans isomerase (trigger factor) |
RA | 453,656 | T→A | 31.2% | S259T (TCC→ACC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
RA | 456,298 | T→A | 90.9% | L652Q (CTG→CAG) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 456,588 | G→T | 93.3% | D749Y (GAC→TAC) | lon → | DNA‑binding ATP‑dependent protease La |
RA | 465,341 | A→C | 29.7% | I339L (ATT→CTT) | mdlA → | putative multidrug transporter subunit of ABC superfamily, ATP‑binding component |
RA | 469,916 | Δ1 bp | 5.3% | coding (702/861 nt) | tesB ← | acyl‑CoA thioesterase 2 |
RA | 474,138 | G→T | 93.8% | intergenic (‑65/+99) | ylaB ← / ← ylaC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase/DUF1449 family inner membrane protein |
RA | 475,502 | T→A | 34.4% | intergenic (‑128/+44) | maa ← / ← hha | maltose O‑acetyltransferase/modulator of gene expression, with H‑NS |
RA | 475,805 | C→A | 92.9% | A120A (GCG→GCT) | tomB ← | Hha toxicity attenuator; conjugation‑related protein |
RA | 479,244 | C→A | 91.6% | A206S (GCC→TCC) | acrB ← | multidrug efflux system protein |
RA | 480,820 | C→T | 92.0% | D86N (GAC→AAC) | acrA ← | multidrug efflux system |
RA | 481,667 | G→A | 89.1% | A151T (GCG→ACG) | acrR → | transcriptional repressor |
RA | 486,912 | C→A | 26.8% | I15I (ATC→ATA) | apt → | adenine phosphoribosyltransferase |
RA | 509,737 | G→A | 44.0% | E97K (GAG→AAG) | cueR → | copper‑responsive regulon transcriptional regulator |
RA | 511,619 | A→T | 29.5% | Q82L (CAA→CTA) | fetA → | iron exporter, ATP‑binding subunit, ABC transporter FetAB subunit; peroxide resistance protein |
RA | 522,859 | T→G | 19.1% | S1381R (AGT→AGG) | rhsD → | Rhs family putative polymorphic toxin |
RA | 523,413 | G→T | 31.9% | pseudogene (6/708 nt) | rhsH → | pseudogene, Rhs familly protein |
RA | 523,947 | G→A | 16.7% | pseudogene (540/708 nt) | rhsH → | pseudogene, Rhs familly protein |
RA | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
RA | 527,186 | T→A | 8.9% | L164F (TTA→TTT) | allS ← | allD operon transcriptional activator |
RA | 530,466 | C→A | 100% | F365L (TTC→TTA) | gcl → | glyoxylate carboligase |
RA | 542,200 | Δ1 bp | 100% | coding (65/1668 nt) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
RA | 546,491 | G→T | 91.3% | V199V (GTG→GTT) | ybcF → | putative carbonate kinase |
RA | 549,397 | G→T | 94.5% | intergenic (‑1/+2) | lpxH ← / ← ppiB | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase/peptidyl‑prolyl cis‑trans isomerase B (rotamase B) |
RA | 552,831 | A→T | 33.4% | F123I (TTC→ATC) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase/ 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
RA | 554,327 | G→T | 7.0% | intergenic (+117/‑103) | sfmA → / → sfmC | FimA homolog/putative periplasmic pilus chaperone |
RA | 557,303 | A→T | 30.8% | E717D (GAA→GAT) | sfmD → | putative outer membrane export usher protein |
RA | 557,592 | G→T | 40.9% | D814Y (GAC→TAC) | sfmD → | putative outer membrane export usher protein |
RA | 560,919 | G→T | 10.9% | V172V (GTC→GTA) | intD ← | DLP12 prophage; putative phage integrase |
RA | 568,464 | G→T | 5.5% | E30* (GAA→TAA) | ninE → | DLP12 prophage; conserved protein |
RA | 576,998 | G→T | 88.5% | pseudogene (189/309 nt) | aaaD → | pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
RA | 581,203 | A→T | 100% | intergenic (‑114/‑310) | ompT ← / → pauD | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)/tRNA‑OTHER |
RA | 583,341 | T→G | 91.6% | S33R (AGT→CGT) | ybcH ← | PRK09936 family protein |
RA | 598,081 | G→T | 7.5% | G223C (GGC→TGC) | pheP → | phenylalanine transporter |
RA | 607,931 | G→A | 91.4% | S7F (TCC→TTC) | fepA ← | iron‑enterobactin outer membrane transporter |
RA | 615,143 | C→A | 28.2% | T171T (ACG→ACT) | fepC ← | iron‑enterobactin transporter subunit |
RA | 619,048 | C→A | 44.9% | A307S (GCC→TCC) | fepB ← | iron‑enterobactin transporter subunit |
RA | 623,935 | C→A | 6.6% | I262I (ATC→ATA) | entB → | isochorismatase |
RA | 625,364 | G→T | 93.7% | G5G (GGG→GGT) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
RA | 639,231 | G→A | 100% | L65F (CTT→TTT) | rnk ← | regulator of nucleoside diphosphate kinase |
RA | 647,234 | C→T | 36.8% | E27K (GAA→AAA) | citC ← | [citrate [pro‑3S]‑lyase] ligase |
RA | 647,422 | G→T | 100% | intergenic (‑110/‑269) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 647,509 | T→C | 100% | intergenic (‑197/‑182) | citC ← / → citA | [citrate [pro‑3S]‑lyase] ligase/sensory histidine kinase in two‑component regulatory system with CitB |
RA | 648,056 | C→A | 94.1% | F122L (TTC→TTA) | citA → | sensory histidine kinase in two‑component regulatory system with CitB |
RA | 650,141 | G→T | 5.5% | V428V (GTC→GTA) | dcuC ← | anaerobic C4‑dicarboxylate transport |
RA | 651,654 | A→G | 6.2% | intergenic (‑230/‑359) | dcuC ← / → pagP | anaerobic C4‑dicarboxylate transport/phospholipid:lipid A palmitoyltransferase |
RA | 652,865 | Δ1 bp | 91.7% | coding (118/210 nt) | cspE → | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
RA | 662,108 | A→T | 93.3% | V522V (GTT→GTA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 662,631 | C→A | 100% | R348L (CGC→CTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
RA | 664,243 | C→A | 33.4% | D84Y (GAT→TAT) | rsfS ← | ribosomal silencing factor |
RA | 666,998 | G→T | 33.5% | L22I (CTT→ATT) | holA ← | DNA polymerase III, delta subunit |
RA | 667,348 | G→T | 40.4% | Q99K (CAG→AAG) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
RA | 672,142 | T→A | 40.4% | intergenic (‑139/‑25) | ybeQ ← / → ybeR | Sel1 family TPR‑like repeat protein/uncharacterized protein |
RA | 689,079 | C→A | 10.1% | E445* (GAA→TAA) | miaB ← | tRNA‑i(6)A37 methylthiotransferase |
RA | 693,739 | G→T | 50.8% | H299N (CAC→AAC) | asnB ← | asparagine synthetase B |
RA | 705,588 | C→A | 92.5% | intergenic (+16/+68) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
RA | 706,097 | A→C | 45.1% | T2T (ACT→ACG) *29G (TGA→GGA) |
fur ← uof ← |
ferric iron uptake regulon transcriptional repressor; autorepressor ryhB‑regulated fur leader peptide |
RA | 706,185 | A→G | 9.6% | intergenic (‑4/+206) | uof ← / ← fldA | ryhB‑regulated fur leader peptide/flavodoxin 1 |
RA | 723,846 | A→C | 29.8% | W115G (TGG→GGG) | kdpA ← | potassium translocating ATPase, subunit A |
RA | 724,813 | A→T | 92.4% | intergenic (+17/‑226) | ybfA → / → rhsC | DUF2517 family protein/Rhs family putative polymorphic toxin |
RA | 725,650 | G→T | 30.8% | P204P (CCG→CCT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,149 | G→A | 6.3% | D1371N (GAT→AAT) | rhsC → | Rhs family putative polymorphic toxin |
RA | 729,456 | G→A | 52.5% | R75R (AGG→AGA) | ybfB → | putative membrane protein |
RA | 732,494 | G→T | 47.9% | pseudogene (214/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
RA | 735,817 | G→T | 31.2% | L285L (CTG→CTT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
RA | 742,840 | G→T | 23.4% | A129E (GCG→GAG) | abrB ← | regulator of aidB expression; inner membrane protein |
RA | 743,278 | G→A | 24.9% | intergenic (‑53/+99) | abrB ← / ← ybgO | regulator of aidB expression; inner membrane protein/putative fimbrial protein |
RA | 750,112 | A→T | 38.4% | intergenic (‑188/‑521) | gltA ← / → sdhC | citrate synthase/succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
RA | 754,572 | G→T | 91.4% | E137D (GAG→GAT) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
RA | 757,353 | A→T | 28.4% | N126Y (AAT→TAT) | sucB → | dihydrolipoyltranssuccinase |
RA | 759,000 | C→A | 94.0% | F177L (TTC→TTA) | sucC → | succinyl‑CoA synthetase, beta subunit |
RA | 761,420 | C→T | 30.8% | intergenic (‑89/‑20) | mngR ← / → mngA | Transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon/fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 772,664 | A→C | 12.4% | K289N (AAA→AAC) | tolA → | membrane anchored protein in TolA‑TolQ‑TolR complex |
RA | 779,256 | T→A | 7.5% | I212N (ATC→AAC) | pnuC → | nicotinamide riboside transporter |
RA | 788,902 | G→T | 88.4% | R115S (CGT→AGT) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 789,044 | G→T | 29.8% | I67I (ATC→ATA) | modF ← | fused molybdate transporter subunits of ABC superfamily: ATP‑binding components |
RA | 792,351 | G→T | 21.6% | A114A (GCG→GCT) | modC → | molybdate transporter subunit |
RA | 800,488 | G→T | 90.6% | V510V (GTG→GTT) | ybhJ → | putative hydratase |
RA | 800,779 | G→T | 100% | E607D (GAG→GAT) | ybhJ → | putative hydratase |
RA | 805,693 | A→C | 8.3% | E298D (GAA→GAC) | bioB → | biotin synthase |
RA | 816,095 | T→A | 8.2% | intergenic (+51/‑154) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
RA | 816,152 | C→A | 30.2% | intergenic (+108/‑97) | ybhL → / → ybhM | UPF0005 family inner membrane protein/UPF0005 family inner membrane protein |
RA | 816,292 | A→T | 43.8% | H15L (CAC→CTC) | ybhM → | UPF0005 family inner membrane protein |
RA | 818,362 | G→T | 33.8% | G278G (GGC→GGA) | clsB ← | cardiolipin synthase 2 |
RA | 828,374 | G→T | 89.5% | V11V (GTC→GTA) | ybiA ← | DUF1768 family protein |
RA | 832,445 | G→T | 92.1% | P213P (CCG→CCT) | ybiC → | putative dehydrogenase |
RA | 843,299 | C→A | 94.9% | W54C (TGG→TGT) | glnH ← | glutamine transporter subunit |
RA | 851,782 | A→T | 26.9% | K122* (AAA→TAA) | ybiT → | putative transporter subunit of ABC superfamily: ATP‑binding component |
RA | 861,323 | T→A | 10.3% | S166S (TCA→TCT) | moeA ← | molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein |
RA | 863,481 | T→G | 11.1% | L169R (CTC→CGC) | gsiA → | glutathione transporter ATP‑binding protein, ABC superfamily |
RA | 863,745 | T→A | 32.1% | F257Y (TTT→TAT) | gsiA → | glutathione transporter ATP‑binding protein, ABC superfamily |
RA | 868,473 | A→C | 10.2% | I13I (ATA→ATC) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 868,897 | G→T | 33.9% | D155Y (GAC→TAC) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 876,447 | G→A | 100% | D89N (GAT→AAT) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 6a) |
RA | 877,482 | C→A | 28.8% | D237Y (GAT→TAT) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
RA | 879,085 | G→T | 100% | intergenic (‑241/‑44) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux system protein |
RA | 884,152 | G→T | 19.8% | S375* (TCG→TAG) | ybjL ← | putative transporter |
RA | 889,044 | G→T | 28.3% | intergenic (+155/‑196) | ybjN → / → potF | negative regulator of motility; multicopy suppressor of coaA(Ts)/putrescine transporter subunit: periplasmic‑binding component of ABC superfamily |
RA | 899,961 | T→A | 8.4% | intergenic (‑38/‑88) | ybjP ← / → ybjQ | lipoprotein/UPF0145 family protein |
RA | 907,596 | G→T | 38.6% | P4Q (CCA→CAA) | hcr ← | HCP oxidoreductase, NADH‑dependent |
RA | 925,160 | G→T | 89.0% | S420* (TCA→TAA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 925,355 | A→T | 34.4% | L355Q (CTG→CAG) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 925,957 | A→T | 33.0% | I154I (ATT→ATA) | cydD ← | fused glutathione, cysteine exporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 943,573 | G→T | 92.8% | A297S (GCC→TCC) | ycaM → | putative transporter |
RA | 955,568 | A→T | 47.6% | intergenic (+17/‑152) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
RA | 963,256 | G→A | 28.1% | D394N (GAT→AAT) | msbA → | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
RA | 968,415 | G→T | 91.9% | S148* (TCG→TAG) | ycbC ← | DUF218 superfamily protein |
RA | 976,873 | C→A | 30.2% | A124E (GCG→GAG) | ldtD → | murein L,D‑transpeptidase |
RA | 991,460 | A→T | 7.9% | L314Q (CTG→CAG) | ssuA ← | aliphatic sulfonate binding protein, SsuABC ABC transporter |
RA | 997,965 | G→T | 47.0% | D235Y (GAT→TAT) | elfG → | putative fimbrial‑like adhesin protein |
RA | 1,024,703 | G→T | 49.6% | G241G (GGC→GGA) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent |
RA | 1,048,928 | C→A | 93.3% | E903* (GAA→TAA) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,049,407 | G→T | 90.1% | T743K (ACG→AAG) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
RA | 1,073,243 | C→A | 27.5% | G366C (GGT→TGT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,073,863 | G→T | 30.3% | S159* (TCG→TAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
RA | 1,077,911 | A→C | 100% | K71N (AAA→AAC) | efeO → | inactive ferrous ion transporter EfeUOB |
RA | 1,083,443 | G→T | 43.4% | S624* (TCG→TAG) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,084,103 | A→T | 88.9% | L404* (TTA→TAA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
RA | 1,116,964 | A→G | 92.4% | intergenic (‑21/+53) | dinI ← / ← pyrC | DNA damage‑inducible protein I/dihydro‑orotase |
RA | 1,118,506 | A→T | 9.4% | L75Q (CTA→CAA) | yceB ← | lipoprotein, DUF1439 family |
RA | 1,132,494 | T→A | 27.3% | I255I (ATT→ATA) | flgI → | putative flagellar basal body protein |
RA | 1,151,750 | G→T | 91.6% | R178L (CGC→CTC) | holB → | DNA polymerase III, delta prime subunit |
RA | 1,152,278 | G→T | 90.9% | E16* (GAA→TAA) | ycfH → | putative DNase |
RA | 1,164,454 | G→A | 23.3% | intergenic (‑166/‑75) | ycfQ ← / → bhsA | repressor for bhsA(ycfR)/biofilm, cell surface and signaling protein |
RA | 1,173,073 | T→A | 30.2% | F100I (TTC→ATC) | lolE → | lipoprotein‑releasing system transmembrane protein |
RA | 1,175,193 | A→T | 29.7% | E36V (GAA→GTA) | cobB → | deacetylase of acs and cheY, chemotaxis regulator |
RA | 1,191,676 | C→T | 32.9% | H366H (CAC→CAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,688 | C→T | 29.4% | T370T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,701 | T→C | 24.6% | L375L (TTA→CTA) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,703 | A→G | 24.1% | L375L (TTA→TTG) ‡ | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,733 | C→T | 15.5% | N385N (AAC→AAT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,736 | G→C | 15.5% | A386A (GCG→GCC) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,739 | A→G | 15.5% | K387K (AAA→AAG) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,191,748 | C→T | 9.2% | T390T (ACC→ACT) | icd → | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
RA | 1,193,516 | T→G | 15.4% | N60H (AAT→CAT) | ymfE ← | e14 prophage; putative inner membrane protein |
RA | 1,193,873 | G→T | 93.3% | intergenic (‑180/‑278) | ymfE ← / → lit | e14 prophage; putative inner membrane protein/e14 prophage; cell death peptidase, inhibitor of T4 late gene expression |
RA | 1,204,284 | C→A | 68.8% | D98Y (GAT→TAT) | tfaE ← | e14 prophage; putative tail fiber assembly protein |
RA | 1,211,169 | C→A | 87.8% | intergenic (‑238/‑76) | bluF ← / → ycgZ | anti‑repressor for YcgE, blue light‑responsive; FAD‑binding; has c‑di‑GMP phosphodiesterase‑like EAL domain, but does not degrade c‑di‑GMP/RcsB connector protein for regulation of biofilm and acid‑resistance |
RA | 1,219,533 | A→G | 100% | intergenic (+170/+202) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
RA | 1,220,996 | G→T | 100% | R181R (CGG→AGG) | minC ← | cell division inhibitor |
RA | 1,224,292 | G→A | 94.3% | D8N (GAT→AAT) | ycgN → | UPF0153 family cysteine cluster protein |
RA | 1,226,292 | T→A | 93.5% | C24S (TGT→AGT) | umuD → | DNA polymerase V, subunit D |
RA | 1,227,613 | C→A | 37.1% | N324K (AAC→AAA) | umuC → | DNA polymerase V, subunit C |
RA | 1,228,591 | G→T | 93.1% | intergenic (‑105/+41) | dsbB ← / ← nhaB | oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I/sodium:proton antiporter |
RA | 1,245,682 | T→G | 20.1% | T205P (ACC→CCC) | dhaK ← | dihydroxyacetone kinase, PTS‑dependent, dihydroxyacetone‑binding subunit |
RA | 1,251,120 | T→A | 32.4% | T97S (ACC→TCC) | ycgV ← | putative adhesin |
RA | 1,277,786 | G→A | 91.6% | D823N (GAC→AAC) | narG → | nitrate reductase 1, alpha subunit |
RA | 1,288,669 | A→T | 40.8% | intergenic (‑291/‑314) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
RA | 1,301,604 | A→T | 7.1% | I433I (ATT→ATA) | clsA ← | cardiolipin synthase 1 |
RA | 1,322,140 | T→A | 90.7% | T159S (ACG→TCG) | btuR ← | cob(I)yrinic acid a,c‑diamide adenosyltransferase |
RA | 1,330,955 | G→T | 43.6% | D290Y (GAT→TAT) | acnA → | aconitate hydratase 1 |
RA | 1,334,048 | G→T | 37.3% | E154D (GAG→GAT) | pgpB → | phosphatidylglycerophosphatase B |
RA | 1,337,533 | G→T | 93.6% | A18E (GCA→GAA) | osmB ← | lipoprotein |
RA | 1,340,901 | A→T | 40.7% | S33S (TCT→TCA) | gmr ← | cyclic‑di‑GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability |
RA | 1,365,283 | G→T | 90.8% | E271* (GAG→TAG) | ycjM → | alpha amylase catalytic domain family protein |
RA | 1,369,694 | G→A | 6.8% | D159N (GAT→AAT) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
JC JC | 1,376,043 | IS5 (–) +4 bp | 100% | pseudogene (10‑13/126 nt) | ycjV → | pseudogene; putative ATP‑binding component of a transport system |
RA | 1,377,394 | C→T | 93.5% | A275A (GCG→GCA) | ycjW ← | LacI family putative transcriptional repressor |
RA | 1,386,008 | G→T | 90.3% | Q35K (CAG→AAG) | ycjY ← | S9 homolog non‑peptidase family protein |
RA | 1,388,406 | G→T | 100% | R308L (CGC→CTC) | mppA → | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
RA | 1,396,370 | G→T | 5.9% | N381K (AAC→AAA) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
RA | 1,417,454 | C→A | 32.3% | pseudogene (497/500 nt) | ydaW → | Rac prophage; pseudogene, DNA‑binding protein family;Phage or Prophage Related |
RA | 1,423,594 | G→T | 12.1% | D97Y (GAT→TAT) | stfR → | Rac prophage; putative tail fiber protein |
RA | 1,424,234 | C→A | 89.7% | S310* (TCA→TAA) | stfR → | Rac prophage; putative tail fiber protein |
JC JC | 1,428,894 | IS2 (–) +5 bp | 93.4% | intergenic (‑413/+317) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,429,000 | C→A | 8.5% | intergenic (‑519/+215) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
RA | 1,439,518 | C→A | 91.6% | S737S (TCC→TCA) | ydbH → | putative membrane‑anchored protein, function unknown |
RA | 1,443,093 | C→A | 28.7% | L440I (CTC→ATC) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,443,196 | A→T | 34.2% | Q474L (CAG→CTG) | feaB → | phenylacetaldehyde dehydrogenase |
RA | 1,444,739 | G→A | 30.3% | P290S (CCC→TCC) | tynA ← | tyramine oxidase, copper‑requiring |
RA | 1,448,466 | C→A | 25.1% | Q95K (CAA→AAA) | paaA → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
RA | 1,451,422 | A→T | 48.8% | T246S (ACG→TCG) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
RA | 1,454,118 | A→T | 7.0% | I270F (ATT→TTT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,454,724 | G→T | 92.0% | G472C (GGT→TGT) | paaH → | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent |
RA | 1,488,630 | C→A | 35.8% | T233T (ACG→ACT) | ydcI ← | putative DNA‑binding transcriptional regulator |
RA | 1,519,349 | T→A | 94.9% | K297* (AAA→TAA) | ansP ← | L‑asparagine transporter |
RA | 1,529,506 | C→T | 31.6% | G204S (GGC→AGC) | yddE ← | PhzC‑PhzF family protein |
RA | 1,533,556 | G→T | 29.8% | H1098N (CAC→AAC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,533,940 | C→T | 5.9% | A970T (GCG→ACG) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
RA | 1,548,144 | G→T | 92.7% | intergenic (‑49/+85) | adhP ← / ← maeA | ethanol‑active dehydrogenase/acetaldehyde‑active reductase/malate dehydrogenase, (decarboxylating, NAD‑requiring) (malic enzyme) |
RA | 1,552,629 | C→A | 45.7% | D216Y (GAT→TAT) | ddpD ← | D,D‑dipeptide permease system, ATP‑binding component |
RA | 1,563,276 | G→T | 100% | H491N (CAC→AAC) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
RA | 1,565,497 | G→A | 92.1% | S269L (TCG→TTG) | gadB ← | glutamate decarboxylase B, PLP‑dependent |
RA | 1,566,392 | A→T | 27.4% | intergenic (‑90/+272) | gadB ← / ← pqqL | glutamate decarboxylase B, PLP‑dependent/putative periplasmic M16 family zinc metalloendopeptidase |
RA | 1,575,339 | G→T | 92.5% | F481L (TTC→TTA) | ydeN ← | putative Ser‑type periplasmic non‑aryl sulfatase |
RA | 1,586,871 | G→T | 34.5% | intergenic (‑172/+51) | hipB ← / ← yneO | antitoxin of HipAB toxin‑antitoxin system/pseudogene, AidA homolog |
RA | 1,602,131 | G→T | 38.8% | D177Y (GAT→TAT) | tam → | trans‑aconitate methyltransferase |
RA | 1,603,440 | G→A | 91.9% | intergenic (‑161/+46) | yneE ← / ← uxaB | bestrophin family putative inner membrane protein/altronate oxidoreductase, NAD‑dependent |
RA | 1,604,418 | C→A | 7.4% | D174Y (GAC→TAC) | uxaB ← | altronate oxidoreductase, NAD‑dependent |
RA | 1,615,440 | G→T | 6.2% | intergenic (‑46/‑149) | eamA ← / → ydeE | cysteine and O‑acetyl‑L‑serine efflux system/putative transporter |
RA | 1,615,798 | C→A | 5.1% | F70L (TTC→TTA) | ydeE → | putative transporter |
RA | 1,620,961 | T→G | 89.1% | Q226P (CAA→CCA) | dcp ← | dipeptidyl carboxypeptidase II |
RA | 1,622,999 | G→T | 6.6% | D131Y (GAT→TAT) | rspR → | transcriptional repressor for rspAB |
RA | 1,625,116 | T→A | 5.8% | N19Y (AAC→TAC) | ydfI ← | putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 1,628,207 | G→A | 100% | G110E (GGA→GAA) | pinQ → | Qin prophage; putative site‑specific recombinase |
RA | 1,647,785 | T→C | 16.7% | K130E (AAA→GAA) | rspB ← | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
RA | 1,661,763 | C→A | 100% | P353P (CCG→CCT) | mlc ← | glucosamine anaerobic growth regulon transcriptional repressor; autorepressor |
RA | 1,673,380 | T→A | 5.4% | S233T (TCA→ACA) ‡ | ydgH → | DUF1471 family periplasmic protein |
RA | 1,673,381 | C→A | 7.7% | S233* (TCA→TAA) ‡ | ydgH → | DUF1471 family periplasmic protein |
RA | 1,689,180 | T→G | 45.9% | E383D (GAA→GAC) | uidA ← | beta‑D‑glucuronidase |
RA | 1,690,981 | G→T | 27.5% | A110E (GCG→GAG) | uidR ← | transcriptional repressor |
RA | 1,692,573 | C→A | 46.2% | D289Y (GAT→TAT) | malI ← | transcriptional repressor of Mal regulon |
RA | 1,696,612 | A→T | 94.9% | E41D (GAA→GAT) | add → | adenosine deaminase |
RA | 1,699,862 | T→A | 44.6% | L119* (TTG→TAG) | ydgK → | DUF2569 family inner membrane protein |
RA | 1,702,966 | T→A | 9.3% | R597R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,062 | T→A | 13.6% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,071 | A→T | 9.8% | A632A (GCA→GCT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,703,101 | C→G | 10.8% | A642A (GCC→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
RA | 1,711,397 | C→T | 94.6% | R28Q (CGA→CAA) | tyrS ← | tyrosyl‑tRNA synthetase |
RA | 1,723,809 | G→T | 46.1% | E156* (GAA→TAA) | lhr → | putative ATP‑dependent helicase |
RA | 1,725,272 | G→T | 25.9% | A643A (GCG→GCT) | lhr → | putative ATP‑dependent helicase |
RA | 1,747,034 | C→A | 27.6% | D352Y (GAT→TAT) | ydhV ← | putative oxidoreductase subunit |
RA | 1,752,893 | T→A | 27.2% | P30P (CCA→CCT) | ldtE ← | murein L,D‑transpeptidase |
RA | 1,754,950 | T→A | 89.9% | I367F (ATT→TTT) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
RA | 1,764,150 | G→T | 45.5% | D274Y (GAT→TAT) | ydiK → | UPF0118 family inner membrane protein |
RA | 1,766,617 | A→T | 6.6% | intergenic (+75/‑152) | ydiM → / → ydiN | MFS superfamily sugar transport 1 family protein/MFS transporter superfamily protein |
RA | 1,767,963 | C→A | 41.9% | P399T (CCT→ACT) | ydiN → | MFS transporter superfamily protein |
RA | 1,770,281 | T→A | 94.9% | D146E (GAT→GAA) | ydiF → | putative acetyl‑CoA:acetoacetyl‑CoA transferase: alpha subunit/beta subunit |
RA | 1,777,451 | C→A | 40.3% | A55E (GCG→GAG) | fadK → | short chain acyl‑CoA synthetase, anaerobic |
RA | 1,791,509 | C→A | 32.9% | P231P (CCG→CCT) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
RA | 1,795,267 | A→T | 37.9% | F521I (TTC→ATC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,796,428 | C→A | 6.9% | V134F (GTC→TTC) | thrS ← | threonyl‑tRNA synthetase |
RA | 1,798,834 | G→A | 34.8% | pseudogene (1060/1476 nt) | arpB → | pseudogene, ankyrin repeats |
RA | 1,802,047 | G→A | 94.7% | intergenic (+100/‑6) | ydiZ → / → yniA | uncharacterized protein/fructosamine kinase family protein |
RA | 1,803,109 | C→T | 47.9% | A128T (GCC→ACC) | yniB ← | putative inner membrane protein |
RA | 1,805,071 | C→A | 8.8% | intergenic (+13/‑120) | ydjM → / → ydjN | inner membrane protein regulated by LexA/putative transporter |
RA | 1,813,263 | C→A | 27.3% | E148* (GAG→TAG) | chbR ← | repressor of chb operon for N,N'‑diacetylchitobiose utilization |
RA | 1,821,696 | A→T | 42.2% | L274Q (CTG→CAG) | astB ← | succinylarginine dihydrolase |
RA | 1,823,835 | A→C | 7.6% | W53G (TGG→GGG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
RA | 1,825,763 | C→A | 91.2% | A159A (GCG→GCT) | astC ← | succinylornithine transaminase, PLP‑dependent |
RA | 1,832,413 | C→A | 94.4% | L315L (CTC→CTA) | ynjC → | inner membrane putative ABC superfamily transporter permease |
RA | 1,833,730 | C→A | 93.5% | R3S (CGT→AGT) | ynjE → | molybdopterin synthase sulfurtransferase |
RA | 1,850,880 | C→A | 31.7% | V102V (GTG→GTT) | ydjH ← | putative kinase |
RA | 1,862,404 | G→T | 28.2% | E414* (GAA→TAA) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
RA | 1,865,422 | C→A | 91.2% | R261R (CGA→AGA) | yeaI → | putative membrane‑anchored diguanylate cyclase |
RA | 1,867,537 | C→A | 6.9% | R414S (CGT→AGT) | yeaJ → | putative diguanylate cyclase |
RA | 1,868,749 | A→C | 25.8% | E47D (GAA→GAC) | yeaL → | UPF0756 family putative inner membrane protein |
RA | 1,872,520 | G→T | 92.2% | P183P (CCG→CCT) | yeaP → | diguanylate cyclase |
RA | 1,902,119 | C→A | 5.5% | intergenic (‑271/+399) | yobF ← / ← yebO | DUF2527 family heat‑induced protein/putative inner membrane protein |
RA | 1,909,342 | T→A | 100% | E150D (GAA→GAT) | proQ ← | RNA chaperone, putative ProP translation regulator |
RA | 1,942,066 | G→T | 32.2% | H115N (CAT→AAT) | yebC ← | UPF0082 family protein |
RA | 1,943,414 | C→A | 7.4% | D456Y (GAT→TAT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,944,177 | C→A | 93.9% | L201L (CTG→CTT) | aspS ← | aspartyl‑tRNA synthetase |
RA | 1,948,050 | C→A | 20.9% | L118I (CTT→ATT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
RA | 1,951,127 | C→A | 14.8% | A46A (GCG→GCT) | torZ ← | trimethylamine N‑oxide reductase system III, catalytic subunit |
RA | 1,959,915 | C→A | 47.1% | P178P (CCG→CCT) | flhB ← | flagellin export apparatus, substrate specificity protein |
RA | 1,969,291 | G→T | 93.0% | I97I (ATC→ATA) | cheA ← | fused chemotactic sensory histidine kinase in two‑component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
RA | 1,973,690 | A→G | 6.2% | A468A (GCT→GCC) | otsA ← | trehalose‑6‑phosphate synthase |
RA | 1,975,265 | C→A | 28.1% | D202Y (GAT→TAT) | otsB ← | trehalose‑6‑phosphate phosphatase, biosynthetic |
RA | 1,979,691 | C→A | 7.4% | intergenic (‑82/‑715) | araF ← / → ftnB | L‑arabinose transporter subunit/ferritin B, putative ferrous iron reservoir |
RA | 1,984,987 | C→A | 45.8% | T38T (ACG→ACT) | yecA ← | UPF0149 family protein |
RA | 1,985,366 | G→T | 32.1% | noncoding (17/87 nt) | leuZ ← | tRNA‑Leu |
RA | 1,986,289 | T→A | 90.4% | N4Y (AAT→TAT) | pgsA ← | phosphatidylglycerophosphate synthetase |
RA | 1,991,843 | G→A | 30.3% | L40F (CTC→TTC) | yecS ← | ABC family putative inner membrane permease |
RA | 1,997,314 | G→T | 100% | intergenic (‑227/‑39) | fliC ← / → fliD | flagellar filament structural protein (flagellin)/flagellar filament capping protein |
RA | 1,999,632 | G→T | 87.3% | intergenic (+73/‑5) | fliT → / → amyA | putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase |
RA | 2,007,547 | C→A | 34.4% | R280S (CGC→AGC) | fliF → | flagellar basal‑body MS‑ring and collar protein |
RA | 2,020,166 | C→A | 93.5% | D445Y (GAC→TAC) | yedQ ← | putative membrane‑anchored diguanylate cyclase |
RA | 2,030,998 | C→A | 12.4% | P212P (CCG→CCT) | yedV ← | putative sensory kinase in two‑component regulatory system with YedW |
RA | 2,035,090 | C→A | 90.3% | Q79K (CAG→AAG) | zinT → | zinc and cadmium binding protein, periplasmic |
RA | 2,040,800 | C→A | 34.6% | T794T (ACC→ACA) | yeeJ → | putative adhesin |
RA | 2,041,982 | A→T | 12.8% | S1188S (TCA→TCT) | yeeJ → | putative adhesin |
RA | 2,067,205 | G→A | 5.2% | G729D (GGC→GAC) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
RA | 2,074,680 | A→T | 90.7% | W22R (TGG→AGG) | sbmC ← | DNA gyrase inhibitor |
RA | 2,077,212 | A→T | 48.3% | N326Y (AAT→TAT) | sbcB → | exodeoxyribonuclease I; exonuclease I |
RA | 2,098,995 | C→A | 100% | G182* (GGA→TGA) | wbbI ← | d‑Galf:alpha‑d‑Glc beta‑1,6‑galactofuranosyltransferase |
RA | 2,102,205 | C→A | 10.8% | V287V (GTG→GTT) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
RA | 2,108,219:1 | +A | 100% | coding (1159/1395 nt) | wcaM ← | colanic acid biosynthesis protein |
RA | 2,110,346 | G→A | 46.5% | T88I (ACC→ATC) | wcaL ← | putative glycosyl transferase |
RA | 2,114,414 | C→A | 31.8% | V208F (GTC→TTC) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,114,911 | A→T | 100% | L42Q (CTG→CAG) | wcaJ ← | colanic biosynthesis UDP‑glucose lipid carrier transferase |
RA | 2,115,361 | C→A | 32.6% | R367L (CGC→CTC) | cpsG ← | phosphomannomutase |
RA | 2,135,016 | C→A | 24.8% | V26V (GTG→GTT) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
RA | 2,139,910 | G→T | 92.4% | R1055L (CGA→CTA) | yegE → | putative diguanylate cyclase |
RA | 2,144,474 | C→A | 93.3% | intergenic (‑8/‑192) | yegI ← / → yegJ | protein kinase‑related putative non‑specific DNA‑binding protein/uncharacterized protein |
RA | 2,148,615 | C→A | 26.5% | R373R (CGC→CGA) | mdtA → | multidrug efflux system, subunit A |
RA | 2,149,603 | A→T | 91.1% | E287V (GAA→GTA) | mdtB → | multidrug efflux system, subunit B |
RA | 2,162,105 | T→A | 27.5% | intergenic (‑318/‑88) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
RA | 2,163,087 | C→A | 29.3% | R299S (CGT→AGT) | yegS → | phosphatidylglycerol kinase, metal‑dependent |
RA | 2,168,487 | A→T | 48.6% | D14E (GAT→GAA) | gatA ← | galactitol‑specific enzyme IIA component of PTS |
RA | 2,168,795 | C→A | 100% | D336Y (GAT→TAT) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
RA | 2,170,713 | C→A | 30.2% | intergenic (‑30/+278) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,724 | G→T | 30.0% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,757 | T→A | 10.0% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,170,758 | C→A | 11.3% | intergenic (‑75/+233) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
RA | 2,179,205 | G→T | 100% | A24E (GCG→GAG) | rcnR ← | transcriptional repressor of rcnA |
RA | 2,181,645 | A→G | 89.2% | N83N (AAT→AAC) | yehA ← | putative fimbrial‑like adhesin protein |
RA | 2,189,888 | C→A | 7.4% | intergenic (+76/‑65) | metG → / → yehH | methionyl‑tRNA synthetase/DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,191,496 | C→A | 23.6% | pseudogene (1544/2847 nt) | yehH → | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
RA | 2,193,783 | C→A | 21.6% | A9E (GCG→GAG) | yehI → | DUF4132 domain‑containing protein |
RA | 2,194,695 | T→A | 94.4% | L313Q (CTA→CAA) | yehI → | DUF4132 domain‑containing protein |
RA | 2,195,449 | A→T | 93.0% | E564D (GAA→GAT) | yehI → | DUF4132 domain‑containing protein |
RA | 2,197,797 | A→T | 23.7% | intergenic (+29/‑278) | yehK → / → yehL | uncharacterized protein/putative ABC superfamily transporter ATP‑binding subunit |
RA | 2,209,162 | C→A | 42.1% | I9I (ATC→ATA) | yohO → | putative membrane protein |
RA | 2,216,296 | C→A | 91.5% | I211I (ATC→ATA) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
RA | 2,220,503 | C→T | 28.2% | V83M (GTG→ATG) | yohF ← | putative oxidoreductase |
RA | 2,223,247 | C→T | 39.3% | W206* (TGG→TGA) | dusC ← | tRNA‑dihydrouridine synthase C |
RA | 2,224,212 | C→A | 25.3% | P37Q (CCG→CAG) | yohJ → | UPF0299 family inner membrane protein |
RA | 2,225,190 | C→T | 87.6% | G231G (GGC→GGT) | yohK → | LrgB family inner membrane protein |
RA | 2,225,260 | C→T | 11.3% | intergenic (+67/‑63) | yohK → / → cdd | LrgB family inner membrane protein/cytidine/deoxycytidine deaminase |
RA | 2,233,142 | A→T | 9.8% | V229E (GTG→GAG) | mglB ← | methyl‑galactoside transporter subunit |
RA | 2,237,098 | G→T | 89.7% | H12N (CAT→AAT) | folE ← | GTP cyclohydrolase I |
RA | 2,240,361 | C→A | 5.9% | intergenic (‑113/+181) | cirA ← / ← lysP | colicin IA outer membrane receptor and translocator; ferric iron‑catecholate transporter/lysine transporter |
RA | 2,243,089 | G→T | 10.8% | I3I (ATC→ATA) | yeiE ← | putative DNA‑binding transcriptional regulator |
RA | 2,259,689 | C→A | 6.1% | intergenic (+188/‑35) | yeiP → / → yeiQ | elongation factor P‑like protein/putative NAD‑dependent D‑mannonate oxidoreductase |
RA | 2,263,137 | C→A | 42.9% | intergenic (+91/‑321) | lpxT → / → mepS | lipid A 1‑diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1‑phosphate phosphotransferase/murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein |
RA | 2,264,143 | G→A | 95.0% | intergenic (+119/‑62) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 2,270,338 | T→A | 32.3% | L187Q (CTG→CAG) | yejF → | microcin C transporter, ATP‑binding subunit; ABC family |
RA | 2,287,829 | C→A | 46.8% | S185S (TCG→TCT) | ccmF ← | heme lyase, CcmF subunit |
RA | 2,289,043 | C→A | 42.3% | W8L (TGG→TTG) | ccmD ← | cytochrome c biogenesis protein |
RA | 2,289,374 | C→A | 92.0% | V142V (GTG→GTT) | ccmC ← | heme exporter subunit |
RA | 2,292,271 | A→T | 8.7% | C263S (TGC→AGC) | napH ← | ferredoxin‑type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) |
RA | 2,294,769 | C→A | 5.6% | P488P (CCG→CCT) | napA ← | nitrate reductase, periplasmic, large subunit |
RA | 2,298,128 | C→T | 6.9% | intergenic (+256/+459) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
RA | 2,303,070 | T→G | 100% | Q272P (CAG→CCG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,303,607 | A→C | 9.2% | L93R (CTG→CGG) | ada ← | fused DNA‑binding transcriptional dual regulator/O6‑methylguanine‑DNA methyltransferase |
RA | 2,305,116 | C→A | 92.5% | intergenic (‑103/+9) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
RA | 2,305,135 | T→C | 92.1% | Y365C (TAC→TGC) | ompC ← | outer membrane porin protein C |
RA | 2,310,690 | C→A | 7.2% | R889L (CGC→CTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,311,008 | T→A | 26.9% | H783L (CAC→CTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
RA | 2,313,924 | C→A | 32.0% | R135S (CGC→AGC) | atoS → | sensory histidine kinase in two‑component regulatory system with AtoC |
RA | 2,330,502 | C→A | 91.4% | D800Y (GAT→TAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,331,288 | C→T | 14.9% | D538N (GAT→AAT) | gyrA ← | DNA gyrase (type II topoisomerase), subunit A |
RA | 2,348,894 | T→A | 36.7% | V384E (GTG→GAG) | glpB → | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
RA | 2,352,573 | C→A | 92.0% | P353P (CCG→CCT) | rhmT ← | putative L‑rhamnonate transporter |
RA | 2,353,889 | C→A | 35.5% | V335V (GTG→GTT) | rhmD ← | L‑rhamnonate dehydratase |
RA | 2,359,673 | G→T | 92.5% | M89I (ATG→ATT) | arnB → | uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent |
RA | 2,362,338 | T→A | 89.7% | L274Q (CTG→CAG) | arnA → | fused UDP‑L‑Ara4N formyltransferase/UDP‑GlcA C‑4'‑decarboxylase |
RA | 2,366,555 | T→G | 24.0% | F62C (TTT→TGT) | arnF → | undecaprenyl phosphate‑alpha‑L‑ara4N exporter; flippase ArnEF subunit |
RA | 2,370,361:1 | +G | 91.8% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,837 | Δ1 bp | 35.9% | coding (235/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,370,987 | C→A | 92.8% | E29* (GAA→TAA) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
RA | 2,373,129 | C→A | 32.9% | D332Y (GAT→TAT) | menF ← | isochorismate synthase 2 |
RA | 2,379,450 | C→T | 5.1% | P38S (CCT→TCT) | yfbL → | putative peptidase |
RA | 2,380,078 | C→T | 42.6% | S247F (TCT→TTT) | yfbL → | putative peptidase |
RA | 2,383,897 | C→A | 46.1% | R363L (CGC→CTC) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
RA | 2,395,041 | C→A | 6.7% | R164L (CGG→CTG) | nuoE ← | NADH:ubiquinone oxidoreductase, chain E |
RA | 2,399,210 | G→T | 94.3% | S304* (TCA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
RA | 2,405,946 | T→G | 94.4% | Q43P (CAG→CCG) | yfbU ← | UPF0304 family protein |
RA | 2,407,678 | T→A | 28.5% | S244T (TCT→ACT) | ackA → | acetate kinase A and propionate kinase 2 |
RA | 2,412,205 | C→A | 49.1% | D151Y (GAT→TAT) | yfcD ← | putative NUDIX hydrolase |
RA | 2,416,101 | C→A | 100% | intergenic (+21/+27) | yfcH → / ← yfcI | putative NAD‑dependent nucleotide‑sugar epimerase/transposase_31 family protein |
RA | 2,422,841 | C→A | 92.8% | D293Y (GAT→TAT) | purF ← | amidophosphoribosyltransferase |
RA | 2,424,074 | C→T | 92.9% | D57N (GAC→AAC) | cvpA ← | colicin V production membrane protein |
RA | 2,426,731 | G→T | 21.0% | I225I (ATC→ATA) | accD ← | acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
RA | 2,442,770 | A→C | 31.6% | D253E (GAT→GAG) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,442,790 | C→A | 24.5% | D247Y (GAT→TAT) | yfcO ← | DUF2544 family putative outer membrane protein |
RA | 2,450,335 | C→T | 89.5% | intergenic (‑44/+159) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,450,346 | G→T | 90.8% | intergenic (‑55/+148) | sixA ← / ← fadJ | phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,452,454 | G→T | 92.9% | P62Q (CCG→CAG) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
RA | 2,453,358 | G→T | 29.0% | I197I (ATC→ATA) | fadI ← | beta‑ketoacyl‑CoA thiolase, anaerobic, subunit |
RA | 2,454,297 | T→G | 93.0% | E39D (GAA→GAC) | yfcZ ← | UPF0381 family protein |
RA | 2,456,282 | C→A | 35.1% | intergenic (+157/‑209) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
RA | 2,463,906 | C→A | 22.5% | Q433K (CAA→AAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,463,920 | C→A | 13.0% | D437E (GAC→GAA) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
RA | 2,474,418 | G→T | 100% | S413* (TCA→TAA) | emrY ← | putative multidrug efflux system |
RA | 2,494,310 | C→A | 27.8% | T150K (ACG→AAG) | ypdB → | response regulator activating yhjX; pyruvate‑responsive YpdAB two‑component system |
RA | 2,495,918 | C→A | 32.6% | V683F (GTT→TTT) | fryA ← | putative PTS enzyme, Hpr component/enzyme I component/enzyme IIA component |
RA | 2,503,015 | C→A | 28.9% | intergenic (‑110/‑94) | glk ← / → yfeO | glucokinase/putative ion channel protein |
RA | 2,504,065 | C→T | 30.3% | G319G (GGC→GGT) | yfeO → | putative ion channel protein |
RA | 2,514,754 | A→T | 9.5% | intergenic (+67/+198) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
RA | 2,516,553 | T→G | 10.6% | E264D (GAA→GAC) | xapB ← | xanthosine transporter |
RA | 2,520,652 | C→A | 94.6% | I116I (ATC→ATA) | yfeH → | putative inorganic ion transporter |
RA | 2,526,023 | T→A | 7.7% | Y86N (TAC→AAC) | cysK → | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
RA | 2,542,627 | T→G | 49.5% | I389M (ATT→ATG) | yfeW → | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity |
RA | 2,549,676 | C→A | 91.2% | L28L (CTG→CTT) | eutL ← | putative ethanol utilization carboxysome structural protein |
RA | 2,559,092 | C→A | 5.9% | A384A (GCG→GCT) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
RA | 2,568,720 | C→T | 92.8% | A33T (GCC→ACC) | eutP ← | putative P‑loop NTPase ethanolamine utilization protein |
RA | 2,576,325 | C→A | 90.4% | E171D (GAG→GAT) | nudK ← | GDP‑mannose pyrophosphatase |
RA | 2,586,791 | G→T | 31.6% | G113G (GGC→GGA) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,587,029:1 | +G | 92.3% | coding (101/699 nt) | ypfH ← | palmitoyl‑CoA esterase activity, uncertain physiological substrate |
RA | 2,589,933 | G→A | 94.0% | T55I (ACC→ATC) | ypfJ ← | putative neutral zinc metallopeptidase |
RA | 2,597,173 | T→G | 52.7% | L666R (CTG→CGG) | hyfB → | hydrogenase 4, membrane subunit |
RA | 2,598,312 | C→A | 6.6% | A48E (GCG→GAG) | hyfD → | hydrogenase 4, membrane subunit |
RA | 2,604,731 | C→T | 15.8% | R223W (CGG→TGG) | hyfI → | hydrogenase 4, Fe‑S subunit |
RA | 2,606,516 | G→T | 100% | D420Y (GAC→TAC) | hyfR → | hydrogenase‑4 transcriptional activator |
RA | 2,610,919 | C→A | 100% | intergenic (+3/‑18) | bepA → / → yfgD | periplasmic metalloprotease and chaperone for OM protein maintenance and assembly/putative oxidoreductase |
RA | 2,614,168 | C→A | 100% | D22Y (GAT→TAT) | upp ← | uracil phosphoribosyltransferase |
RA | 2,618,693 | G→T | 49.5% | E74* (GAA→TAA) | ppx → | exopolyphosphatase |
RA | 2,619,125 | G→T | 33.6% | G218C (GGT→TGT) | ppx → | exopolyphosphatase |
RA | 2,619,563 | C→A | 8.1% | R364R (CGA→AGA) | ppx → | exopolyphosphatase |
RA | 2,632,012 | C→A | 37.0% | intergenic (‑1/+10) | bamB ← / ← yfgM | BamABCDE complex OM biogenesis lipoprotein/putative anti‑RcsB factor |
RA | 2,651,665 | G→T | 91.1% | G210G (GGC→GGA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
RA | 2,664,115 | C→A | 25.9% | R123R (CGG→AGG) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
RA | 2,665,693 | C→A | 7.7% | G96G (GGC→GGA) | hcaD → | phenylpropionate dioxygenase, ferredoxin reductase subunit |
RA | 2,669,978 | C→A | 42.8% | A69A (GCG→GCT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
RA | 2,670,904 | G→T | 7.9% | R273S (CGC→AGC) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,671,274 | C→A | 92.8% | T149T (ACG→ACT) | yphE ← | putative sugar transporter subunit of ABC superfamily, ATP‑binding component |
RA | 2,678,030 | C→A | 27.3% | A279A (GCG→GCT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,678,315 | C→A | 5.1% | A184A (GCG→GCT) | glyA ← | serine hydroxymethyltransferase |
RA | 2,681,873 | T→A | 91.5% | Q97L (CAG→CTG) | glrR ← | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
RA | 2,683,707 | G→T | 7.9% | H251N (CAT→AAT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,683,829 | C→A | 91.2% | R210L (CGT→CTT) | glrK ← | sensor protein kinase regulating glmY sRNA in two‑component system with response regulator GlrR |
RA | 2,692,793 | C→A | 44.3% | H226N (CAT→AAT) | yfhH → | putative DNA‑binding transcriptional regulator |
RA | 2,694,843 | G→T | 45.1% | I82I (ATC→ATA) | pdxJ ← | pyridoxine 5'‑phosphate synthase |
RA | 2,699,380 | C→A | 41.1% | P368P (CCG→CCT) | lepA ← | back‑translocating elongation factor EF4, GTPase |
RA | 2,715,643 | G→T | 93.2% | E778* (GAA→TAA) | pka → | protein lysine acetyltransferase |
RA | 2,719,426 | T→C | 100% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
RA | 2,726,786 | C→A | 90.9% | A249A (GCG→GCT) | clpB ← | protein disaggregation chaperone |
RA | 2,733,753 | C→T | 100% | E253K (GAG→AAG) | aroF ← | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tyrosine‑repressible |
RA | 2,735,293 | A→T | 30.4% | I20I (ATA→ATT) | yfiR → | putative periplasmic inhibitor of YfiN activity |
RA | 2,749,134 | C→A | 9.1% | intergenic (+397/‑384) | smpB → / → intA | trans‑translation protein/CP4‑57 prophage; integrase |
RA | 2,757,927 | A→T | 9.6% | S196T (TCC→ACC) | yfjL ← | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein |
RA | 2,761,733 | T→A | 39.0% | V222E (GTA→GAA) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
RA | 2,771,358 | G→A | 91.2% | intergenic (+217/+147) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
RA | 2,778,281 | C→T | 30.4% | pseudogene (90/1374 nt) | ypjC ← | pseudogene |
RA | 2,779,067 | C→A | 94.0% | intergenic (‑697/+54) | ypjC ← / ← ileY | pseudogene/tRNA‑Ile |
RA | 2,803,846 | C→A | 7.2% | I48I (ATC→ATA) | ygaH → | putative L‑valine exporter, norvaline resistance protein |
RA | 2,806,531 | T→G | 7.9% | L186R (CTG→CGG) | emrB → | multidrug efflux system protein |
RA | 2,808,646 | G→T | 9.8% | R385S (CGC→AGC) | gshA ← | glutamate‑cysteine ligase |
RA | 2,825,783 | C→T | 100% | intergenic (‑135/‑52) | norR ← / → norV | anaerobic nitric oxide reductase DNA‑binding transcriptional activator/anaerobic nitric oxide reductase flavorubredoxin |
RA | 2,828,952 | C→A | 90.7% | T611T (ACG→ACT) | hypF ← | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases |
RA | 2,831,086 | C→A | 37.2% | E127* (GAA→TAA) | hydN ← | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
RA | 2,835,094 | C→A | 40.7% | P249Q (CCG→CAG) | ascB → | cryptic 6‑phospho‑beta‑glucosidase |
RA | 2,841,044 | C→A | 89.0% | A519A (GCG→GCT) | hycC ← | hydrogenase 3, membrane subunit |
RA | 2,846,112 | C→A | 42.0% | I206I (ATC→ATA) | hypD → | hydrogenase maturation protein |
RA | 2,850,790 | C→A | 91.4% | I113I (ATC→ATA) | mutS → | methyl‑directed mismatch repair protein |
RA | 2,860,460 | G→T | 27.6% | R151S (CGC→AGC) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
RA | 2,873,087 | G→T | 90.5% | V15V (GTC→GTA) | ygbT ← | multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme |
RA | 2,876,760 | C→T | 100% | G246G (GGG→GGA) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
RA | 2,878,668 | G→T | 90.4% | V637V (GTC→GTA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,879,449 | G→T | 91.4% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,880,202 | G→T | 6.5% | S126* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
RA | 2,888,584 | G→T | 100% | I185I (ATC→ATA) | ygcQ ← | putative flavoprotein |
RA | 2,893,446 | T→A | 47.4% | K63* (AAA→TAA) | ygcW ← | putative dehydrogenase |
RA | 2,914,100 | C→A | 5.4% | A2A (GCG→GCT) | gudX ← | glucarate dehydratase‑related protein, substrate unknown |
RA | 2,931,717 | C→A | 92.9% | N307K (AAC→AAA) | fucK → | L‑fuculokinase |
RA | 2,932,832 | C→A | 24.3% | R36S (CGT→AGT) | fucR → | l‑fucose operon activator |
RA | 2,932,835 | C→T | 52.8% | R37C (CGC→TGC) | fucR → | l‑fucose operon activator |
RA | 2,934,843 | G→T | 93.2% | H50N (CAT→AAT) | ygdD ← | UPF0382 family inner membrane protein |
RA | 2,936,686 | G→T | 36.9% | intergenic (‑182/‑10) | ygdI ← / → csdA | DUF903 family verified lipoprotein/cysteine sulfinate desulfinase |
RA | 2,938,640 | C→A | 19.6% | D188Y (GAT→TAT) | tcdA ← | tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA |
RA | 2,940,935 | C→A | 5.4% | intergenic (+3/‑31) | metW → / → metV | tRNA‑Met/tRNA‑Met |
RA | 2,957,480 | C→A | 27.6% | L19F (TTG→TTT) | ppdA ← | putative prepilin peptidase‑dependent protein |
RA | 2,959,004 | G→A | 92.9% | I131I (ATC→ATT) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
RA | 2,960,251 | C→A | 8.0% | E515* (GAA→TAA) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,960,829 | C→A | 15.7% | R322L (CGT→CTT) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,961,385 | C→A | 15.9% | E137* (GAA→TAA) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
RA | 2,962,962 | T→A | 43.8% | intergenic (‑626/‑59) | rppH ← / → mutH | RNA pyrophosphohydrolase/methyl‑directed mismatch repair protein |
RA | 2,967,572 | A→G | 33.2% | F601S (TTT→TCT) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
RA | 2,985,884 | C→T | 42.5% | I144I (ATC→ATT) | ygeH → | putative transcriptional regulator |
RA | 2,987,928 | C→A | 24.9% | pseudogene (524/633 nt) | ygeK ← | pseudogene; putative 2‑component transcriptional regulator |
RA | 2,988,505 | C→A | 5.2% | intergenic (‑54/+168) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,988,554 | G→A | 51.3% | intergenic (‑103/+119) | ygeK ← / ← ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
RA | 2,989,295 | C→A | 91.9% | pseudogene (85/261 nt) | ygeN ← | pseudogene |
RA | 2,993,211 | C→A | 100% | V14L (GTG→TTG) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
RA | 2,993,699 | C→A | 84.2% | intergenic (‑449/‑5) | ygeR ← / → xdhA | LysM domain‑containing M23 family putative peptidase; septation lipoprotein/xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,995,335 | C→A | 24.6% | V544V (GTC→GTA) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
RA | 2,999,286 | G→T | 7.2% | intergenic (‑141/‑335) | ygeV ← / → ygeW | putative sigma‑54‑interacting transcriptional activator/putative carbamoyltransferase |
RA | 3,009,187 | G→T | 47.9% | intergenic (+90/‑232) | mocA → / → ygfK | CTP:molybdopterin cytidylyltransferase/putative Fe‑S subunit oxidoreductase subunit |
RA | 3,016,372 | C→A | 6.0% | F566L (TTC→TTA) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,017,285 | G→T | 92.5% | D871Y (GAC→TAC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
RA | 3,019,203 | G→T | 33.1% | E27* (GAG→TAG) | guaD → | guanine deaminase |
RA | 3,022,877 | G→T | 6.0% | R472S (CGC→AGC) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,022,888 | C→A | 8.0% | R468L (CGG→CTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,081 | A→C | 55.1% | V70V (GTT→GTG) | ygfT ← | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit |
RA | 3,024,983 | C→G | 94.1% | G86G (GGC→GGG) | uacT → | uric acid permease |
RA | 3,025,678 | A→T | 36.5% | Q318L (CAA→CTA) | uacT → | uric acid permease |
RA | 3,028,224 | G→T | 28.7% | L104I (CTC→ATC) | lysS ← | lysine tRNA synthetase, constitutive |
RA | 3,030,181 | G→T | 45.0% | H429N (CAT→AAT) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
RA | 3,039,409 | T→G | 13.0% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,041,026 | C→A | 26.5% | D459Y (GAC→TAC) | gcvP ← | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
RA | 3,044,281 | G→A | 26.5% | intergenic (‑255/+193) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,044,464 | G→A | 100% | intergenic (‑438/+10) | gcvT ← / ← ubiI | aminomethyltransferase, tetrahydrofolate‑dependent, subunit (T protein) of glycine cleavage complex/2‑octaprenylphenol hydroxylase, FAD‑dependent |
RA | 3,048,247 | A→T | 8.8% | V186E (GTA→GAA) | ygfB ← | UPF0149 family protein |
RA | 3,049,577 | T→G | 18.9% | intergenic (+53/‑23) | ssrS → / → fau | 6S RNA inhibits RNA polymerase promoter binding/5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,049,645 | G→A | 22.6% | E16K (GAA→AAA) | fau → | 5‑formyltetrahydrofolate cyclo‑ligase family protein |
RA | 3,055,069 | C→A | 30.0% | V287V (GTC→GTA) | scpA → | methylmalonyl‑CoA mutase |
RA | 3,058,692 | C→T | 35.2% | P178S (CCT→TCT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,058,769 | C→T | 44.7% | I203I (ATC→ATT) | scpC → | propionyl‑CoA:succinate CoA transferase |
RA | 3,064,483 | C→A | 21.0% | D41Y (GAC→TAC) | fbaA ← | fructose‑bisphosphate aldolase, class II |
RA | 3,064,914 | G→T | 85.3% | I356I (ATC→ATA) | pgk ← | phosphoglycerate kinase |
RA | 3,068,135 | G→T | 37.8% | F140L (TTC→TTA) | yggD ← | MtlR family putative transcriptional repressor |
RA | 3,072,314 | C→A | 6.5% | E126* (GAA→TAA) | cmtB ← | putative mannitol‑specific enzyme IIA component of PTS |
RA | 3,075,114 | C→A | 86.6% | intergenic (‑120/‑158) | tktA ← / → loiP | transketolase 1, thiamine triphosphate‑binding/Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; heat shock protein that binds Era |
RA | 3,076,526 | C→A | 90.9% | D211Y (GAC→TAC) | speB ← | agmatinase |
RA | 3,080,618 | T→A | 93.7% | V185E (GTG→GAG) | metK → | S‑adenosylmethionine synthetase |
RA | 3,081,697 | T→A | 26.8% | C19S (TGC→AGC) | galP → | D‑galactose transporter |
RA | 3,088,065 | C→A | 42.6% | V125V (GTG→GTT) | yggR ← | putative PilT family AAA+ ATPase |
RA | 3,092,182 | C→A | 19.4% | C248F (TGT→TTT) | yggM ← | DUF1202 family putative secreted protein |
RA | 3,097,262 | C→T | 44.6% | F297F (TTC→TTT) | mutY → | adenine DNA glycosylase |
RA | 3,102,941 | T→A | 6.5% | S10R (AGT→AGA) | yqgA → | DUF554 family putative inner membrane protein |
RA | 3,104,247 | C→A | 25.8% | R80L (CGA→CTA) | yghD ← | putative membrane‑anchored secretion pathway M‑type protein |
RA | 3,110,751 | C→A | 93.3% | R574L (CGT→CTT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,111,434 | C→A | 91.1% | A346A (GCG→GCT) | yghJ ← | DUF4092 family putative lipoprotein peptidase |
RA | 3,120,216 | C→A | 100% | D389Y (GAT→TAT) | glcD ← | glycolate oxidase subunit, FAD‑linked |
RA | 3,132,601 | T→G | 27.4% | I172M (ATT→ATG) | yghU → | putative S‑transferase |
RA | 3,142,668 | G→T | 39.5% | L55I (CTC→ATC) | yqhA ← | UPF0114 family putative inner membrane protein |
RA | 3,144,158 | C→A | 91.5% | intergenic (+253/+19) | yghA → / ← exbD | putative oxidoreductase/membrane spanning protein in TonB‑ExbB‑ExbD complex |
RA | 3,162,420 | G→T | 15.5% | V57V (GTC→GTA) | ygiV ← | transcriptional repressor for mcbR biofilm gene |
RA | 3,164,230 | C→A | 44.6% | R130S (CGT→AGT) | qseC → | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB |
RA | 3,173,669 | G→T | 100% | A189A (GCG→GCT) | ygiB → | DUF1190 family protein |
RA | 3,176,733 | G→T | 45.8% | intergenic (+51/+439) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
RA | 3,191,839 | T→A | 25.0% | N388Y (AAC→TAC) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
RA | 3,214,709 | C→A | 32.0% | intergenic (‑103/‑116) | ygjH ← / → ebgR | putative tRNA binding protein; putative tRNA corner chaperone/transcriptional repressor |
RA | 3,215,927 | C→A | 9.8% | intergenic (+119/‑65) | ebgR → / → ebgA | transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,217,289 | A→T | 46.6% | H433L (CAC→CTC) | ebgA → | evolved beta‑D‑galactosidase, alpha subunit |
RA | 3,224,927 | C→A | 100% | intergenic (+329/‑97) | ygjK → / → fadH | alpha‑glucosidase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
RA | 3,230,857 | C→G | 54.4% | A63G (GCC→GGC) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,231,349 | A→C | 43.5% | Q227P (CAG→CCG) | ygjR → | putative NAD(P)‑dependent dehydrogenase |
RA | 3,237,654 | C→A | 29.8% | M149I (ATG→ATT) | uxaC ← | uronate isomerase |
RA | 3,245,848 | G→T | 91.6% | L62L (CTG→CTT) | yhaH → | DUF805 family inner membrane protein |
RA | 3,246,634 | A→T | 34.2% | intergenic (+8/+43) | yhaI → / ← yhaJ | DUF805 family inner membrane protein/LysR family putative transcriptional regulator |
RA | 3,252,258 | C→A | 100% | D251Y (GAT→TAT) | tdcG ← | L‑serine dehydratase 3, anaerobic |
RA | 3,253,531 | A→T | 17.7% | R749R (CGT→CGA) | tdcE ← | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase |
RA | 3,262,473 | G→A | 6.2% | V234I (GTC→ATC) | yhaC → | pentapetide repeats‑related protein |
RA | 3,263,466 | G→T | 28.5% | intergenic (+505/+109) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
RA | 3,266,646 | C→A | 86.2% | G91C (GGT→TGT) | garL ← | alpha‑dehydro‑beta‑deoxy‑D‑glucarate aldolase |
RA | 3,275,040 | C→A | 10.9% | intergenic (+56/‑295) | agaA → / → agaS | pseudogene, N‑acetylgalactosamine‑6‑phosphate deacetylase fragment; putative N‑acetylgalactosamine‑6‑phosphate deacetylase/tagatose‑6‑phosphate ketose/aldose isomerase |
RA | 3,292,677 | G→T | 5.4% | V115V (GTG→GTT) | yhbO → | stress‑resistance protein |
RA | 3,296,612 | G→T | 47.5% | A255A (GCG→GCT) | yhbV → | U32 peptidase family protein |
RA | 3,302,027 | G→T | 93.5% | S86* (TCG→TAG) | nlpI ← | lipoprotein involved in osmotic sensitivity and filamentation |
RA | 3,312,862 | T→A | 32.0% | R289R (CGT→CGA) | argG → | argininosuccinate synthetase |
RA | 3,314,870 | C→A | 88.4% | A35S (GCG→TCG) | yhbX ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
RA | 3,329,704 | G→T | 26.0% | V50V (GTC→GTA) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
RA | 3,332,963 | C→A | 28.7% | A154A (GCG→GCT) | mlaF ← | ABC transporter maintaining OM lipid asymmetry, ATP‑binding protein |
RA | 3,347,778 | G→A | 100% | intergenic (‑369/‑306) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
RA | 3,351,650 | G→T | 48.8% | E1189D (GAG→GAT) | gltB → | glutamate synthase, large subunit |
RA | 3,354,405 | C→T | 93.4% | intergenic (+430/‑130) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
RA | 3,357,229 | C→A | 30.7% | S355* (TCG→TAG) | yhcD → | putative outer membrane fimbrial subunit usher protein |
RA | 3,365,607 | G→T | 93.6% | I109I (ATC→ATA) | nanT ← | sialic acid transporter |
RA | 3,372,048 | C→A | 7.9% | intergenic (‑38/+181) | rplM ← / ← yhcM | 50S ribosomal subunit protein L13/putative AFG1‑like family P‑loop ATPase |
RA | 3,373,985 | C→A | 92.5% | intergenic (+37/‑117) | yhcB → / → degQ | DUF1043 family inner membrane‑anchored protein/serine endoprotease, periplasmic |
RA | 3,375,260 | G→T | 93.1% | D387Y (GAT→TAT) | degQ → | serine endoprotease, periplasmic |
RA | 3,380,174 | C→A | 29.7% | S458S (TCG→TCT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
RA | 3,386,672 | C→A | 28.8% | P982P (CCG→CCT) | yhdP ← | DUF3971‑AsmA2 domains protein |
RA | 3,392,594 | A→C | 10.4% | A248A (GCT→GCG) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
RA | 3,396,082 | G→T | 93.1% | R204S (CGT→AGT) | csrD ← | targeting factor for csrBC sRNA degradation |
RA | 3,407,007 | G→A | 50.7% | intergenic (‑183/‑216) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,407,008 | G→A | 6.1% | intergenic (‑184/‑215) | acrS ← / → acrE | acrAB operon transcriptional repressor/cytoplasmic membrane lipoprotein |
RA | 3,411,136 | G→T | 6.6% | A915A (GCG→GCT) | acrF → | multidrug efflux system protein |
RA | 3,416,890 | T→G | 5.1% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
RA | 3,437,010 | C→A | 9.7% | V149V (GTG→GTT) | secY ← | preprotein translocase membrane subunit |
RA | 3,437,638 | G→T | 27.1% | G87G (GGC→GGA) | rplO ← | 50S ribosomal subunit protein L15 |
RA | 3,439,443 | G→T | 8.1% | I19I (ATC→ATA) | rplF ← | 50S ribosomal subunit protein L6 |
RA | 3,440,151 | G→T | 100% | I31I (ATC→ATA) | rpsN ← | 30S ribosomal subunit protein S14 |
RA | 3,440,444 | G→T | 100% | S118S (TCC→TCA) | rplE ← | 50S ribosomal subunit protein L5 |
RA | 3,440,832 | T→C | 92.2% | N99D (AAC→GAC) | rplX ← | 50S ribosomal subunit protein L24 |
RA | 3,447,853 | A→T | 7.7% | V302E (GTA→GAA) | gspA ← | general secretory pathway component, cryptic |
RA | 3,455,867 | C→A | 100% | I55I (ATC→ATA) | gspJ → | putative general secretory pathway component, cryptic |
RA | 3,467,941 | C→T | 6.3% | intergenic (‑30/+96) | rpsL ← / ← tusB | 30S ribosomal subunit protein S12/mnm(5)‑s(2)U34‑tRNA synthesis 2‑thiolation protein |
RA | 3,473,139 | G→T | 94.3% | I276I (ATC→ATA) | kefB ← | potassium:proton antiporter |
RA | 3,479,769 | A→T | 91.8% | E97D (GAA→GAT) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
RA | 3,483,095 | C→A | 28.9% | V149F (GTT→TTT) | argD ← | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase |
RA | 3,488,966 | G→C | 94.3% | A533P (GCC→CCC) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,489,397 | C→A | 87.4% | F676L (TTC→TTA) | nirB → | nitrite reductase, large subunit, NAD(P)H‑binding |
RA | 3,498,214 | T→G | 5.2% | intergenic (+72/+80) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
RA | 3,501,571 | C→A | 91.7% | G127C (GGC→TGC) | php ← | phosphotriesterase homology protein |
RA | 3,504,143 | G→T | 47.7% | R65S (CGT→AGT) | yhfX ← | putative pyridoxal 5'‑phosphate binding protein |
RA | 3,504,943 | C→A | 11.1% | R254L (CGA→CTA) | yhfZ ← | putative DNA‑binding transcriptional regulator |
RA | 3,507,749 | G→T | 92.7% | H224N (CAT→AAT) | rpe ← | D‑ribulose‑5‑phosphate 3‑epimerase |
RA | 3,510,311 | C→A | 30.1% | G119C (GGT→TGT) | damX ← | cell division protein that binds to the septal ring |
RA | 3,513,424 | A→T | 46.8% | V213V (GTT→GTA) | hofQ ← | DNA catabolic putative fimbrial transporter |
RA | 3,519,657 | G→T | 100% | intergenic (‑149/‑171) | nudE ← / → yrfF | adenosine nucleotide hydrolase; substrates include Ap3A, Ap2A, ADP‑ribose, NADH/inner membrane protein |
RA | 3,525,950 | C→T | 34.7% | intergenic (‑152/‑227) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase |
RA | 3,538,325 | G→T | 14.5% | A29S (GCC→TCC) | gntX → | DNA catabolic protein |
RA | 3,542,744 | T→A | 5.4% | Q229L (CAG→CTG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
RA | 3,543,959 | G→T | 95.0% | A625E (GCG→GAG) | malP ← | maltodextrin phosphorylase |
RA | 3,551,503 | T→C | 8.6% | intergenic (‑65/‑124) | rtcB ← / → rtcR | RNA‑splicing ligase/sigma 54‑dependent transcriptional regulator of rtcBA expression |
RA | 3,559,170 | C→A | 8.4% | D258Y (GAT→TAT) | glgP ← | glycogen phosphorylase |
RA | 3,561,574 | C→A | 93.8% | W372L (TGG→TTG) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
RA | 3,575,640 | C→A | 5.7% | L140I (CTT→ATT) | yhhZ → | putative Hcp1 family polymorphic toxin protein; putative colicin‑like DNase/tRNase activity |
RA | 3,580,673 | G→T | 21.0% | R124I (AGA→ATA) | yhhA → | DUF2756 family protein |
RA | 3,585,079 | C→A | 31.2% | A203S (GCC→TCC) | ugpB ← | glycerol‑3‑phosphate transporter subunit |
RA | 3,588,904 | A→T | 36.3% | L287Q (CTG→CAG) | livH ← | leucine/isoleucine/valine transporter subunit |
RA | 3,598,440 | C→A | 32.4% | N34K (AAC→AAA) | yhhL → | DUF1145 family protein |
RA | 3,632,600 | T→G | 27.2% | intergenic (+99/+145) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
RA | 3,639,551 | C→A | 26.8% | T269T (ACC→ACA) | rlmJ → | 23S rRNA m(6)A2030 methyltransferase, SAM‑dependent |
RA | 3,656,367 | C→A | 5.0% | A865E (GCG→GAG) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
RA | 3,662,660 | T→C | 89.9% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
RA | 3,679,301 | T→G | 92.1% | Q1078P (CAG→CCG) | bcsC ← | cellulose synthase subunit |
RA | 3,679,324 | C→A | 92.7% | M1070I (ATG→ATT) | bcsC ← | cellulose synthase subunit |
RA | 3,680,910 | G→T | 90.1% | H542N (CAT→AAT) | bcsC ← | cellulose synthase subunit |
RA | 3,689,369 | C→A | 6.6% | A59A (GCG→GCT) | yhjR ← | DUF2629 family protein |
RA | 3,698,875 | G→T | 45.8% | F92L (TTC→TTA) | dppB ← | dipeptide/heme transporter |
RA | 3,701,561 | G→A | 24.5% | intergenic (‑496/+415) | dppA ← / ← proK | dipeptide transporter/tRNA‑Pro |
RA | 3,703,272 | C→A | 32.0% | A188A (GCG→GCT) | eptB ← | KDO phosphoethanolamine transferase, Ca(2+)‑inducible |
RA | 3,717,788 | C→A | 91.9% | P297P (CCG→CCT) | glyQ ← | glycine tRNA synthetase, alpha subunit |
RA | 3,718,959 | C→A | 39.7% | L38F (TTG→TTT) | ysaB ← | uncharacterized protein |
RA | 3,730,615 | C→A | 34.2% | intergenic (‑78/‑242) | bax ← / → malS | putative glucosaminidase/alpha‑amylase |
RA | 3,738,431 | C→A | 94.5% | P90T (CCA→ACA) | yiaN → | 2,3‑diketo‑L‑gulonate TRAP transporter large permease protein |
RA | 3,759,388 | C→A | 32.8% | N1282K (AAC→AAA) | rhsA → | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
RA | 3,767,000 | G→T | 43.2% | D454Y (GAC→TAC) | mtlA → | fused mannitol‑specific PTS enzymes: IIA components/IIB components/IIC components |
RA | 3,769,093 | C→A | 11.6% | T54T (ACC→ACA) | mtlR → | mannitol operon repressor |
RA | 3,774,382 | T→G | 7.7% | intergenic (+5/‑193) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,779,281 | C→G | 6.5% | A221G (GCT→GGT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,779,319 | G→T | 9.0% | E234* (GAA→TAA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
RA | 3,785,915 | G→T | 90.9% | intergenic (‑4/+271) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
RA | 3,791,588 | T→A | 29.9% | intergenic (+21/+11) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
RA | 3,802,238 | A→T | 7.2% | A113A (GCA→GCT) | waaA → | 3‑deoxy‑D‑manno‑octulosonic‑acid transferase (KDO transferase) |
RA | 3,804,099 | G→T | 7.1% | F138L (TTC→TTA) | mutM ← | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
RA | 3,810,195 | C→A | 93.1% | R54S (CGT→AGT) | yicC → | UPF0701 family protein |
RA | 3,814,302 | T→A | 35.6% | S77C (AGC→TGC) | ligB ← | DNA ligase, NAD(+)‑dependent |
RA | 3,816,601 | A→T | 94.2% | H281L (CAC→CTC) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
RA | 3,818,010 | C→A | 93.3% | H46N (CAT→AAT) | trmH → | tRNA mG18‑2'‑O‑methyltransferase, SAM‑dependent |
RA | 3,822,339 | A→C | 14.2% | Q12P (CAA→CCA) ‡ | xanP → | xanthine permease |
RA | 3,822,340 | A→C | 9.4% | Q12H (CAA→CAC) ‡ | xanP → | xanthine permease |
RA | 3,825,702 | C→A | 93.7% | K732N (AAG→AAT) | yicI ← | putative alpha‑glucosidase |
RA | 3,828,206 | T→A | 21.2% | S362C (AGT→TGT) | yicJ ← | putative transporter |
RA | 3,830,197 | C→A | 92.3% | intergenic (+281/‑116) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,830,311 | G→T | 92.2% | intergenic (+395/‑2) | yicT → / → setC | pseudogene/putative arabinose efflux transporter |
RA | 3,835,154 | G→A | 31.6% | intergenic (‑55/+156) | nepI ← / ← yicN | putative transporter/DUF1198 family protein |
RA | 3,846,307 | C→A | 27.4% | A14A (GCG→GCT) | ivbL ← | ilvB operon leader peptide |
RA | 3,851,275 | G→T | 30.1% | H164N (CAT→AAT) | yidJ ← | sulfatase/phosphatase superfamily protein |
RA | 3,860,159 | C→A | 100% | P33P (CCG→CCT) | ibpB ← | heat shock chaperone |
RA | 3,860,327 | C→A | 48.8% | intergenic (‑70/+42) | ibpB ← / ← ibpA | heat shock chaperone/heat shock chaperone |
RA | 3,860,653 | C→A | 46.3% | E44* (GAA→TAA) | ibpA ← | heat shock chaperone |
RA | 3,865,120 | C→A | 42.3% | intergenic (‑30/+90) | dgoT ← / ← dgoD | D‑galactonate transporter/galactonate dehydratase |
RA | 3,870,977 | T→A | 5.5% | intergenic (‑152/+88) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
RA | 3,894,614 | C→A | 25.0% | A323S (GCA→TCA) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
RA | 3,896,189 | G→T | 6.8% | T291T (ACC→ACA) | bglB ← | cryptic phospho‑beta‑glucosidase B |
RA | 3,898,349 | G→A | 5.7% | F203F (TTC→TTT) | bglF ← | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component |
RA | 3,906,384 | G→T | 6.4% | I215I (ATC→ATA) | glmS ← | L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
RA | 3,910,894 | C→A | 93.0% | M244I (ATG→ATT) | atpG ← | F1 sector of membrane‑bound ATP synthase, gamma subunit |
RA | 3,916,052 | C→A | 30.1% | intergenic (‑252/+365) | atpI ← / ← rsmG | ATP synthase, membrane‑bound accessory factor/16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,916,830 | C→A | 91.2% | D71Y (GAT→TAT) | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
RA | 3,917,548 | C→A | 7.0% | S482S (TCG→TCT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
RA | 3,923,028 | C→A | 45.4% | D476Y (GAC→TAC) | ravA ← | hexameric AAA+ MoxR family ATPase, putative molecular chaperone |
RA | 3,926,831 | G→T | 100% | D41Y (GAT→TAT) | rbsD → | putative cytoplasmic sugar‑binding protein |
RA | 3,927,972 | G→T | 41.2% | E279* (GAA→TAA) | rbsA → | fused D‑ribose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 3,933,680 | G→T | 25.8% | S98* (TCG→TAG) | hsrA ← | putative multidrug or homocysteine efflux system |
RA | 3,935,100 | G→T | 41.1% | intergenic (‑413/‑68) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
RA | 3,944,000 | T→A | 5.6% | pseudogene (81/984 nt) | ilvG → | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
RA | 3,950,395 | C→A | 30.6% | E262D (GAG→GAT) | ilvY ← | transcriptional activator of ilvC; autorepressor |
RA | 3,952,658 | C→T | 29.8% | D443D (GAC→GAT) | ilvC → | ketol‑acid reductoisomerase, NAD(P)‑binding |
RA | 3,952,817 | T→G | 8.9% | intergenic (+12/+75) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
RA | 3,956,662 | T→G | 8.1% | S310R (AGC→CGC) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
RA | 3,960,036 | G→A | 89.3% | R87H (CGC→CAC) | rho → | transcription termination factor |
RA | 3,966,854 | C→A | 91.6% | R325S (CGT→AGT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
RA | 3,967,474 | G→T | 43.5% | A169A (GCG→GCT) | rffH → | glucose‑1‑phosphate thymidylyltransferase |
RA | 3,969,710 | G→T | 91.2% | G25C (GGT→TGT) | wzxE → | O‑antigen translocase |
RA | 3,970,026 | C→A | 21.0% | A130D (GCC→GAC) | wzxE → | O‑antigen translocase |
RA | 3,988,075 | T→A | 93.2% | V65E (GTG→GAG) | yifL → | putative lipoprotein |
RA | 3,994,076 | A→T | 93.4% | L114* (TTA→TAA) | yigE ← | DUF2233 family protein |
RA | 3,994,247 | A→T | 94.6% | V57E (GTG→GAG) | yigE ← | DUF2233 family protein |
RA | 3,998,903 | C→A | 5.1% | L228I (CTC→ATC) | pldA → | outer membrane phospholipase A |
RA | 4,009,108 | A→T | 15.2% | L141* (TTA→TAA) | ysgA ← | putative carboxymethylenebutenolidase |
RA | 4,009,667 | T→C | 9.0% | intergenic (‑138/‑124) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,009,705 | G→A | 93.9% | intergenic (‑176/‑86) | ysgA ← / → udp | putative carboxymethylenebutenolidase/uridine phosphorylase |
RA | 4,024,827 | G→T | 49.0% | D103Y (GAT→TAT) | pepQ → | proline dipeptidase |
RA | 4,035,421 | G→T | 46.7% | intergenic (‑62/‑8) | mobA ← / → yihD | molybdopterin‑guanine dinucleotide synthase/DUF1040 protein YihD |
RA | 4,039,399 | G→T | 8.7% | F188L (TTC→TTA) | yihG ← | inner membrane protein, inner membrane acyltransferase |
RA | 4,046,172 | A→T | 43.9% | K256N (AAA→AAT) | hemN → | coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen‑independent |
RA | 4,056,018 | T→A | 92.1% | F138I (TTC→ATC) | yihN → | MFS transporter family protein |
RA | 4,062,424 | G→T | 93.0% | I71I (ATC→ATA) | yihQ ← | alpha‑glucosidase |
RA | 4,066,133 | T→G | 100% | S267R (AGC→CGC) | yihU ← | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent |
RA | 4,068,208 | C→A | 94.4% | G60G (GGC→GGA) | yihW → | DeoR family putative transcriptional regulator |
RA | 4,076,055 | T→G | 12.4% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
RA | 4,094,362 | C→A | 91.7% | W181L (TGG→TTG) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
RA | 4,096,555 | G→T | 6.6% | S53S (TCG→TCT) | fieF → | ferrous iron and zinc transporter |
RA | 4,097,822 | G→T | 100% | E115* (GAA→TAA) | pfkA → | 6‑phosphofructokinase I |
RA | 4,105,186 | C→A | 16.6% | D108Y (GAT→TAT) | glpX ← | fructose 1,6‑bisphosphatase II |
RA | 4,122,248 | A→T | 46.4% | intergenic (+53/‑296) | metL → / → metF | Bifunctional aspartokinase/homoserine dehydrogenase 2/5,10‑methylenetetrahydrofolate reductase |
RA | 4,127,022 | T→G | 92.8% | E188D (GAA→GAC) | yijF ← | DUF1287 family protein |
RA | 4,143,375 | A→G | 8.2% | intergenic (‑349/+249) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,143,605 | G→T | 32.0% | intergenic (‑579/+19) | ppc ← / ← argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
RA | 4,150,197 | G→T | 26.6% | H174Q (CAC→CAA) | sthA ← | pyridine nucleotide transhydrogenase, soluble |
RA | 4,163,570 | T→A | 31.9% | I187I (ATT→ATA) | birA → | bifunctional biotin‑[acetylCoA carboxylase] holoenzyme synthetase/ DNA‑binding transcriptional repressor, bio‑5'‑AMP‑binding |
RA | 4,167,908 | T→A | 10.5% | W80R (TGG→AGG) | nusG → | transcription termination factor |
RA | 4,173,145 | A→T | 46.4% | Q658L (CAG→CTG) | rpoB → | RNA polymerase, beta subunit |
RA | 4,176,823 | G→T | 94.3% | D516Y (GAC→TAC) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,178,758 | G→T | 33.2% | G1161C (GGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
RA | 4,183,054 | C→A | 5.7% | A151S (GCG→TCG) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
RA | 4,207,552 | G→T | 43.7% | M172I (ATG→ATT) | aceA → | isocitrate lyase |
RA | 4,207,558 | G→T | 31.5% | A174A (GCG→GCT) | aceA → | isocitrate lyase |
RA | 4,211,576 | G→T | 94.0% | S280R (AGC→AGA) | arpA ← | ankyrin repeat protein |
RA | 4,211,803 | G→A | 89.6% | P205S (CCT→TCT) | arpA ← | ankyrin repeat protein |
RA | 4,214,563 | A→T | 50.5% | T270S (ACC→TCC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
RA | 4,218,928 | G→A | 32.9% | E424K (GAA→AAA) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,219,081 | C→A | 10.9% | R475S (CGC→AGC) | yjbB → | putative Na+/Pi‑cotransporter |
RA | 4,220,948 | G→T | 29.4% | D223Y (GAT→TAT) | rluF → | 23S rRNA pseudouridine(2604) synthase |
RA | 4,230,913 | A→T | 100% | W424R (TGG→AGG) | xylE ← | D‑xylose transporter |
RA | 4,234,527 | C→G | 13.3% | L159L (CTG→CTC) | malF ← | maltose transporter subunit |
RA | 4,235,869 | G→T | 45.8% | A160E (GCG→GAG) | malE ← | maltose transporter subunit |
RA | 4,241,633 | C→T | 31.9% | pseudogene (745/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
RA | 4,242,509 | C→T | 42.8% | L26F (CTC→TTC) | ubiC → | chorismate‑‑pyruvate lyase |
RA | 4,257,593 | C→T | 20.8% | N184N (AAC→AAT) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
RA | 4,265,064 | C→A | 90.3% | intergenic (‑95/‑335) | yjcB ← / → yjcC | putative inner membrane protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
RA | 4,268,967 | A→T | 10.6% | S187S (TCA→TCT) | yjcD → | inner membrane putative guanine permease |
RA | 4,271,906 | C→T | 34.4% | E366E (GAG→GAA) | yjcF ← | pentapeptide repeats protein |
RA | 4,273,297 | A→T | 33.7% | W512R (TGG→AGG) | actP ← | acetate transporter |
RA | 4,274,926 | A→C | 93.4% | I72M (ATT→ATG) | yjcH ← | DUF485 family inner membrane protein |
RA | 4,275,142 | C→A | 93.1% | intergenic (‑1/+199) | yjcH ← / ← acs | DUF485 family inner membrane protein/acetyl‑CoA synthetase |
RA | 4,286,118 | A→G | 6.4% | intergenic (+396/+135) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
RA | 4,290,080 | G→T | 94.1% | I256I (ATC→ATA) | mdtP ← | outer membrane factor of efflux pump |
RA | 4,297,485 | G→C | 39.4% | G44G (GGC→GGG) | alsK ← | D‑allose kinase |
RA | 4,297,846 | C→A | 94.8% | M150I (ATG→ATT) | alsE ← | allulose‑6‑phosphate 3‑epimerase |
RA | 4,300,333 | T→A | 37.1% | E155D (GAA→GAT) | alsA ← | fused D‑allose transporter subunits of ABC superfamily: ATP‑binding components |
RA | 4,303,614 | T→A | 93.7% | *150R (TGA→AGA) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
RA | 4,304,132 | G→T | 8.4% | intergenic (+118/+29) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
RA | 4,308,395 | G→T | 31.0% | H63N (CAC→AAC) | phnK ← | carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
RA | 4,320,106 | T→A | 13.3% | intergenic (+51/‑213) | yjcZ → / → proP | YjcZ family protein, mutational suppressor of yhjH motility mutation/proline/glycine betaine transporter |
RA | 4,330,426 | Δ1 bp | 100% | intergenic (‑88/+111) | adiA ← / ← melR | arginine decarboxylase/melibiose operon transcriptional regulator; autoregulator |
RA | 4,335,195 | G→T | 18.9% | L61I (CTC→ATC) | yjdF ← | DUF2238 family inner membrane protein |
RA | 4,336,681 | A→T | 33.6% | Y155N (TAC→AAC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
RA | 4,338,712 | T→A | 11.9% | intergenic (‑151/+420) | dcuB ← / ← dcuR | C4‑dicarboxylate transporter, anaerobic; DcuS co‑sensor/response regulator in two‑component regulatory system with DcuS |
RA | 4,341,023 | A→T | 92.9% | Y153N (TAC→AAC) | dcuS ← | sensory histidine kinase in two‑component regulatory system with DcuR, regulator of anaerobic fumarate respiration |
RA | 4,345,995 | C→A | 29.4% | V78V (GTG→GTT) | dtpC ← | dipeptide and tripeptide permease |
RA | 4,354,610 | A→T | 29.1% | W84R (TGG→AGG) | dsbD ← | fused thiol:disulfide interchange protein: activator of DsbC/conserved protein |
RA | 4,355,606 | G→T | 5.6% | H329N (CAT→AAT) | dcuA ← | C4‑dicarboxylate antiporter |
RA | 4,358,920 | G→T | 49.1% | R147L (CGC→CTC) | fxsA → | suppressor of F exclusion of phage T7 |
RA | 4,372,891 | A→T | 32.1% | A144A (GCA→GCT) | epmA → | Elongation Factor P Lys34 lysyltransferase |
RA | 4,376,178 | C→A | 48.7% | E1004* (GAA→TAA) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,378,778 | G→T | 43.6% | S137* (TCG→TAG) | mscM ← | mechanosensitive channel protein, miniconductance |
RA | 4,382,399 | A→C | 5.8% | intergenic (+35/‑1) | glyX → / → glyY | tRNA‑Gly/tRNA‑Gly |
RA | 4,388,902 | G→T | 94.7% | A558A (GCG→GCT) | mutL → | methyl‑directed mismatch repair protein |
RA | 4,394,875 | G→T | 46.2% | A124A (GCG→GCT) | purA → | adenylosuccinate synthetase |
RA | 4,396,598 | A→T | 94.2% | E43V (GAA→GTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,396,680 | C→A | 5.3% | F70L (TTC→TTA) | rnr → | exoribonuclease R, RNase R |
RA | 4,402,850 | G→T | 39.6% | L2L (CTG→CTT) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,402,870 | G→T | 6.3% | R9L (CGA→CTA) | yjfC → | ATP‑Grasp family ATPase |
RA | 4,405,735 | G→T | 32.1% | intergenic (+18/+99) | aidB → / ← yjfN | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase/DUF1471 family periplasmic protein |
RA | 4,407,307 | A→T | 21.4% | H180L (CAC→CTC) | yjfP → | acyl CoA esterase |
RA | 4,411,145 | T→G | 9.2% | L450R (CTG→CGG) | ulaA → | L‑ascorbate‑specific enzyme IIC permease component of PTS |
RA | 4,417,551 | A→C | 91.6% | pseudogene (41/402 nt) | ytfA → | pseudogene, related to transcriptional regulators |
RA | 4,421,791 | G→T | 32.0% | R4S (CGC→AGC) | ytfE ← | iron‑sulfur cluster repair protein RIC |
RA | 4,427,761 | G→T | 7.5% | A80S (GCC→TCC) | ytfI → | uncharacterized protein |
RA | 4,428,092 | G→T | 51.7% | G190V (GGA→GTA) | ytfI → | uncharacterized protein |
RA | 4,440,321 | C→A | 32.8% | I181I (ATC→ATA) | ytfQ → | galactofuranose binding proteint: periplasmic‑binding component of ABC superfamily |
RA | 4,442,597 | G→T | 12.6% | A70A (GCG→GCT) | ytfT → | inner membrane putative ABC superfamily sugar transporter permease |
RA | 4,458,254 | T→A | 93.8% | V271V (GTT→GTA) | mgtA → | magnesium transporter |
RA | 4,458,609 | G→T | 100% | D390Y (GAT→TAT) | mgtA → | magnesium transporter |
RA | 4,465,836 | C→T | 18.8% | L195L (CTA→TTA) | yjgL → | uncharacterized protein |
RA | 4,468,165 | A→G | 90.6% | intergenic (‑37/‑125) | argI ← / → rraB | ornithine carbamoyltransferase 1/protein inhibitor of RNase E |
RA | 4,469,550 | G→A | 92.2% | A2T (GCT→ACT) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,017 | G→A | 89.9% | M157I (ATG→ATA) | yjgN → | DUF898 family inner membrane protein |
RA | 4,470,873 | G→T | 43.4% | R928S (CGT→AGT) | valS ← | valyl‑tRNA synthetase |
RA | 4,473,750 | G→T | 9.5% | F116L (TTC→TTA) | holC ← | DNA polymerase III, chi subunit |
RA | 4,474,526 | C→A | 6.8% | D415Y (GAC→TAC) | pepA ← | multifunctional aminopeptidase A: a cyteinylglycinase, transcription regulator and site‑specific recombination factor |
RA | 4,481,249 | A→T | 24.9% | V365E (GTG→GAG) | idnT ← | L‑idonate and D‑gluconate transporter |
RA | 4,494,721 | G→A | 43.0% | A283T (GCC→ACC) | yjhB → | putative transporter |
RA | 4,495,560 | A→T | 30.0% | N153Y (AAC→TAC) | yjhC → | putative oxidoreductase |
RA | 4,497,253 | G→T | 8.9% | pseudogene (240/255 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
RA | 4,512,693 | T→A | 92.4% | K407* (AAG→TAG) | yjhG ← | putative dehydratase |
RA | 4,515,068 | G→T | 17.8% | L185I (CTT→ATT) | yjhI ← | putative DNA‑binding transcriptional regulator |
RA | 4,523,001 | T→A | 42.6% | intergenic (‑1/+55) | yjhP ← / ← yjhQ | putative methyltransferase/putative acetyltransferase |
RA | 4,525,234 | G→A | 93.9% | pseudogene (415/1029 nt) | yjhR → | pseudogene, helicase family; putative frameshift suppressor |
RA | 4,529,263 | A→T | 9.2% | L19* (TTA→TAA) | nanC ← | N‑acetylnuraminic acid outer membrane channel protein |
RA | 4,530,002 | C→A | 8.0% | intergenic (‑684/‑772) | nanC ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,143 | A→T | 100% | I124F (ATT→TTT) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,531,451 | A→G | 9.6% | intergenic (+75/‑403) | fimB → / → fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
RA | 4,541,449 | A→T | 40.9% | intergenic (‑336/‑4) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
RA | 4,555,156 | G→T | 90.2% | A171E (GCG→GAG) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,555,620 | T→G | 30.7% | E16D (GAA→GAC) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
RA | 4,562,043 | C→A | 93.5% | intergenic (+311/‑188) | yjiS → / → yjiT | DUF1127 family protein/pseudogene |
RA | 4,565,742 | C→A | 29.0% | pseudogene (2007/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
RA | 4,571,233 | G→A | 45.6% | S16F (TCT→TTT) | hsdS ← | specificity determinant for hsdM and hsdR |
RA | 4,584,381 | G→T | 93.0% | I53I (ATC→ATA) | yjjL ← | L‑galactonate transporter |
RA | 4,584,756 | A→T | 48.6% | *305K (TAA→AAA) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,585,338 | A→T | 90.1% | S111T (TCT→ACT) | yjjM ← | yjjMN operon transcriptional activator |
RA | 4,590,074 | A→C | 27.5% | V240G (GTA→GGA) | dnaC ← | DNA biosynthesis protein |
RA | 4,591,139 | C→A | 47.4% | D66Y (GAT→TAT) | dnaT ← | DNA biosynthesis protein (primosomal protein I) |
RA | 4,596,243 | T→A | 45.1% | intergenic (‑25/+243) | leuQ ← / ← rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
RA | 4,603,125 | A→C | 8.0% | T300P (ACG→CCG) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,603,144 | C→A | 7.6% | T306N (ACT→AAT) | yjjU → | putative patatin‑like family phospholipase |
RA | 4,604,397 | G→A | 5.5% | intergenic (+320/+100) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
RA | 4,612,781 | C→A | 31.3% | A399E (GCG→GAG) | yjjJ → | putative protein kinase |
RA | 4,617,009 | G→T | 32.7% | A427A (GCG→GCT) | radA → | DNA repair protein |
RA | 4,624,581 | C→A | 8.1% | E183* (GAA→TAA) | rob ← | right oriC‑binding transcriptional activator, AraC family |
RA | 4,625,288 | T→C | 87.4% | intergenic (‑161/‑50) | rob ← / → creA | right oriC‑binding transcriptional activator, AraC family/putative periplasmic protein |
RA | 4,629,649 | A→T | 30.8% | Y159N (TAC→AAC) | arcA ← | response regulator in two‑component regulatory system with ArcB or CpxA |
Unassigned missing coverage evidence | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | CP009273 | 373891 | 375071 | 1181 | 133 [128] | [127] 129 | frmA–[frmR] | frmA,[frmR] |
* | * | ÷ | CP009273 | 4100629 | 4101480 | 852 | 132 [128] | [128] 129 | tpiA | tpiA |
Unassigned new junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | 360104 = | 280 (1.010) | 204 (0.740) | 117/278 | NT | 42.1% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
* | ? | CP009273 | = 360278 | NA (NA) | 4386 (16.840) +TTAATTAA |
195/262 | NT | 94.2% | intergenic (‑212/+383) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 361823 | 287 (1.040) | coding (831/834 nt) | mhpR | mhp operon transcriptional activator | |||||
* | ? | CP009273 | 360652 = | 359 (1.300) | 4385 (23.790) +46 bp |
186/186 | NT | 95.6% | intergenic (‑586/+9) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
? | CP009273 | = 1317577 | 252 (0.910) | coding (101/882 nt) | yciV | PHP domain protein | |||||
* | ? | CP009273 | 376716 = | NA (NA) | 230 (0.830) | 127/278 | NT | 94.7% | intergenic (‑1/‑91) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
? | CP009273 | 566411 = | 13 (0.050) | coding (63/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | = 378046 | NA (NA) | 203 (0.730) | 107/278 | NT | 94.0% | intergenic (+11/+1) | insD1/yaiX | IS2 transposase TnpB/pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase |
? | CP009273 | = 566415 | 13 (0.050) | coding (67/552 nt) | ybcL | inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family | |||||
* | ? | CP009273 | 1203246 = | 33 (0.120) | 70 (0.290) | 49/246 | NT | 66.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | 1205075 = | 42 (0.170) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1203261 | 33 (0.120) | 118 (0.480) | 63/246 | NT | 76.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
? | CP009273 | = 1205058 | 42 (0.170) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
* | ? | CP009273 | 1635219 = | 9 (0.030) | 190 (0.700) | 106/274 | NT | 95.5% | intergenic (‑377/+377) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 2063752 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
* | ? | CP009273 | = 1635223 | 9 (0.030) | 228 (0.820) | 114/278 | NT | 96.2% | intergenic (‑381/+373) | essQ/cspB | Qin prophage; putative S lysis protein/Qin prophage; cold shock protein |
? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
* | ? | CP009273 | = 1645805 | NA (NA) | 19 (0.070) | 13/278 | NT | 6.7% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
? | CP009273 | 2310157 = | 263 (0.950) | coding (502/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN | |||||
* | ? | CP009273 | = 2283592 | NA (NA) | 14 (0.050) | 7/278 | NT | 7.0% | noncoding (1/1195 nt) | IS5 | repeat region |
? | CP009273 | = 3795905 | 181 (0.670) | coding (514/1020 nt) | waaR | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||
* | ? | CP009273 | = 3180783 | NA (NA) | 108 (0.400) | 64/274 | NT | 47.9% | pseudogene (4/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
? | CP009273 | = 3833569 | 119 (0.430) | intergenic (‑216/‑6) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein | |||||
* | ? | CP009273 | 3833562 = | 118 (0.430) | 105 (0.380) | 69/276 | NT | 47.3% | intergenic (‑209/‑13) | nlpA/yicS | cytoplasmic membrane lipoprotein‑28/putative periplasmic protein |
? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |