breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	freq	annotation	gene	description
RA	27,581	C→T	6.2%	intergenic (‑428/+18)	PP_0022 ← / ← PP_0023	hypothetical protein/hypothetical protein
RA	35,009	A→G	8.1%	intergenic (+27/+31)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	35,012	C→T	6.7%	intergenic (+30/+28)	czrSA → / ← PP_0031	metal‑sensor histidine kinase/hypothetical protein
RA	36,171	A→T	7.8%	intergenic (+56/+27)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,172	A→T	7.5%	intergenic (+57/+26)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,174	A→C	7.6%	intergenic (+59/+24)	PP_0032 → / ← PP_0033	hypothetical protein/undecaprenyl‑glycosyl transferase
RA	36,677	G→C	8.9%	P326A (CCA→GCA)	PP_0033 ←	undecaprenyl‑glycosyl transferase
RA	36,683	C→T	9.6%	A324T (GCG→ACG)	PP_0033 ←	undecaprenyl‑glycosyl transferase
RA	45,680	C→G	5.7%	intergenic (‑156/+47)	cadA‑I ← / ← PP_0042	cadmium translocating P‑type ATPase/hypothetical protein
RA	58,747	T→A	19.6%	intergenic (‑658/+30)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,750	T→A	19.6%	intergenic (‑661/+27)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	58,766	C→T	11.4%	intergenic (‑677/+11)	PP_5424 ← / ← PP_0050	hypothetical protein/hypothetical protein
RA	77,500	A→T	7.9%	L15H (CTC→CAC)	rsmB ←	ribosomal RNA small subunit methyltransferase B
RA	77,503	A→T	9.9%	V14E (GTG→GAG)	rsmB ←	ribosomal RNA small subunit methyltransferase B
RA	92,900	G→C	8.9%	P232A (CCA→GCA)	trpB ←	tryptophan synthase subunit beta
RA	92,906	G→A	6.9%	R230C (CGT→TGT)	trpB ←	tryptophan synthase subunit beta
RA	132,467	G→C	5.6%	intergenic (+41/‑111)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	132,471	T→C	5.5%	intergenic (+45/‑107)	cc → / → dsbA	cytochrome c4/thiol:disulfide interchange protein
RA	145,899	T→A	8.8%	L378Q (CTG→CAG)	gltP →	glutamate/aspartate‑proton DAACS transporter
RA	155,546	A→C	7.1%	intergenic (‑251/+32)	yjbB ← / ← ygdQ	Na+/Pi‑cotransporter/transport protein
RA	181,943	C→T	23.4%	noncoding (52/120 nt)	PP_5SB →	5S ribosomal RNA
RA	182,034	Δ1 bp	10.5%	intergenic (+23/+42)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	182,036:1	+C	10.5%	intergenic (+25/+40)	PP_5SB → / ← PP_0160	5S ribosomal RNA/ferrioxamine receptor
RA	195,559	C→A	18.4%	T355T (ACC→ACA)	PP_0168 →	putative surface adhesion protein
RA	195,628	C→T	7.5%	D378D (GAC→GAT)	PP_0168 →	putative surface adhesion protein
RA	195,629	A→G	7.6%	T379A (ACC→GCC)	PP_0168 →	putative surface adhesion protein
RA	195,634	C→T	47.6%	T380T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	196,306	T→C	22.2%	N604N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	196,327	A→C	30.1%	T611T (ACA→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,351	C→G	40.7%	T619T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	196,390	T→C	37.8%	D632D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	196,795	G→C	15.0%	T767T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	196,879	G→A	24.9%	V795V (GTG→GTA)	PP_0168 →	putative surface adhesion protein
RA	197,032	C→T	8.4%	T846T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,089	T→C	17.0%	N865N (AAT→AAC)	PP_0168 →	putative surface adhesion protein
RA	197,179	A→G	8.3%	V895V (GTA→GTG)	PP_0168 →	putative surface adhesion protein
RA	197,185	C→T	7.4%	T897T (ACC→ACT)	PP_0168 →	putative surface adhesion protein
RA	197,551	C→G	14.0%	T1019T (ACC→ACG)	PP_0168 →	putative surface adhesion protein
RA	197,572	G→A	23.3%	K1026K (AAG→AAA)	PP_0168 →	putative surface adhesion protein
RA	197,590	T→C	26.0%	D1032D (GAT→GAC)	PP_0168 →	putative surface adhesion protein
RA	197,632	T→C	8.2%	T1046T (ACT→ACC)	PP_0168 →	putative surface adhesion protein
RA	197,695	G→C	6.8%	T1067T (ACG→ACC)	PP_0168 →	putative surface adhesion protein
RA	198,777	T→A	11.4%	L1428Q (CTG→CAG)	PP_0168 →	putative surface adhesion protein
RA	202,309	C→G	6.9%	V2605V (GTC→GTG)	PP_0168 →	putative surface adhesion protein
RA	220,936	C→G	6.2%	A89G (GCG→GGG)	PP_5431 →	hypothetical protein
RA	228,897	A→G	6.2%	S575G (AGT→GGT)	PP_0176 →	putative efflux transporter
RA	230,863	C→T	5.5%	A175V (GCG→GTG)	PP_0179 →	putative efflux transporter
RA	240,531	G→C	8.7%	A276P (GCC→CCC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	240,536	G→C	8.5%	G277G (GGG→GGC)	PP_0188 →	uroporphyrin‑III C‑methyltransferase
RA	243,934	Δ1 bp	12.0%	coding (237/663 nt)	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,937	C→A	12.0%	Q78H (CAG→CAT)	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,942	T→G	12.8%	M77L (ATG→CTG)	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	243,944:1	+A	12.8%	coding (227/663 nt)	fkl ←	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	247,393	A→G	6.0%	Q524R (CAG→CGG)	yheS →	ABC transporter ATP‑binding protein
RA	247,399	G→C	6.5%	S526T (AGT→ACT)	yheS →	ABC transporter ATP‑binding protein
RA	247,405	C→T	6.3%	P528L (CCG→CTG)	yheS →	ABC transporter ATP‑binding protein
RA	258,182	A→G	8.8%	K27K (AAA→AAG)	PP_0206 →	4Fe‑4S ferredoxin
RA	271,282	C→T	7.1%	Q395* (CAG→TAG)	PP_0218 →	sensory box protein
RA	280,199	Δ1 bp	6.5%	coding (51/669 nt)	sctS ←	sulfur compound ABC transporter permease
RA	280,200	A→C	8.0%	L17R (CTG→CGG)	sctS ←	sulfur compound ABC transporter permease
RA	280,200:1	+T	8.0%	coding (50/669 nt)	sctS ←	sulfur compound ABC transporter permease
RA	280,203	A→T	8.0%	L16Q (CTG→CAG)	sctS ←	sulfur compound ABC transporter permease
RA	284,587	T→A	13.2%	intergenic (+33/+30)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	284,588	T→A	13.2%	intergenic (+34/+29)	betT‑II → / ← atsK	choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase
RA	320,471	G→A	12.1%	intergenic (‑140/‑138)	rmlC ← / → aguA	dTDP‑4‑dehydrorhamnose 3,5‑epimerase/agmatine deiminase
RA	322,135	G→A	25.0%	intergenic (+420/+38)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,142	T→C	25.5%	intergenic (+427/+31)	aguA → / ← PP_0267	agmatine deiminase/ferric siderophore receptor
RA	322,878	C→T	5.8%	L455L (CTG→CTA) ‡	PP_0267 ←	ferric siderophore receptor
RA	322,879	A→G	5.8%	L455P (CTG→CCG) ‡	PP_0267 ←	ferric siderophore receptor
RA	326,067	C→A	10.5%	*556Y (TAG→TAT)	PP_0269 ←	glutamate synthase large subunit
RA	326,070	T→G	9.3%	A555A (GCA→GCC)	PP_0269 ←	glutamate synthase large subunit
RA	335,799	G→C	11.3%	noncoding (24/89 nt)	PP_mr04 →	C4 ncRNA
RA	335,806	T→G	10.9%	noncoding (31/89 nt)	PP_mr04 →	C4 ncRNA
RA	335,807	C→A	10.9%	noncoding (32/89 nt)	PP_mr04 →	C4 ncRNA
RA	337,812	A→G	15.3%	intergenic (‑59/+70)	PP_0279 ← / ← PP_0280	hypothetical protein/amino acid ABC transporter permease
RA	344,035	A→G	6.7%	intergenic (+121/+68)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,044	Δ1 bp	6.8%	intergenic (+130/+59)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,048:1	+T	6.6%	intergenic (+134/+55)	PP_5440 → / ← PP_t72	hypothetical protein/tRNA‑Phe
RA	344,680	A→G	8.3%	V309A (GTC→GCC)	mutY ←	A/G‑specific adenine glycosylase
RA	344,683	T→A	7.8%	H308L (CAC→CTC)	mutY ←	A/G‑specific adenine glycosylase
RA	363,578	T→G	7.0%	intergenic (‑93/+74)	lcdH ← / ← PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
RA	363,582	T→C	7.5%	intergenic (‑97/+70)	lcdH ← / ← PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
RA	363,590	C→A	7.4%	intergenic (‑105/+62)	lcdH ← / ← PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
RA	363,591	C→A	7.4%	intergenic (‑106/+61)	lcdH ← / ← PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
RA	363,593	G→T	7.2%	intergenic (‑108/+59)	lcdH ← / ← PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
RA	367,365	C→A	12.9%	intergenic (‑48/+26)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	367,370	T→G	12.2%	intergenic (‑53/+21)	PP_5442 ← / ← PP_0306	hypothetical protein/hypothetical protein
RA	378,092	Δ1 bp	5.5%	intergenic (+32/+33)	PP_0314 → / ← gbcA	hypothetical protein/glycine‑betaine dioxygenase subunit
RA	378,094	T→A	5.7%	intergenic (+34/+31)	PP_0314 → / ← gbcA	hypothetical protein/glycine‑betaine dioxygenase subunit
RA	378,097	T→A	5.7%	intergenic (+37/+28)	PP_0314 → / ← gbcA	hypothetical protein/glycine‑betaine dioxygenase subunit
RA	378,098:1	+A	5.7%	intergenic (+38/+27)	PP_0314 → / ← gbcA	hypothetical protein/glycine‑betaine dioxygenase subunit
RA	387,343	G→C	7.8%	E160D (GAG→GAC)	glyA‑I →	serine hydroxymethyltransferase
RA	388,725	T→A	8.6%	L198Q (CTG→CAG)	soxB →	sarcosine oxidase subunit beta
RA	404,189	T→A	6.4%	Q624L (CAG→CTG)	PP_0337 ←	sensory box protein
RA	405,012	C→A	7.8%	E350* (GAG→TAG)	PP_0337 ←	sensory box protein
RA	409,081	C→T	70.6%	G529D (GGC→GAC)	aceE ←	pyruvate dehydrogenase E1 component
RA	417,375	C→T	11.6%	P361L (CCG→CTG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	417,378	A→G	11.7%	Q362R (CAG→CGG)	waaG →	lipopolysaccharide glucosyltransferase I
RA	425,351	A→C	7.0%	intergenic (‑39/+18)	PP_0349 ← / ← PP_0350	membrane protein/ferrichrome‑iron receptor
RA	427,755	A→C	10.2%	L16R (CTG→CGG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	427,756	G→T	9.8%	L16M (CTG→ATG) ‡	PP_0350 ←	ferrichrome‑iron receptor
RA	449,734	G→T	10.6%	G301V (GGC→GTC)	PP_0370 →	acyl‑CoA dehydrogenase family protein
RA	461,033	C→G	7.7%	V479L (GTG→CTG)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,040	T→G	6.2%	P476P (CCA→CCC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	461,983	C→T	9.7%	G162D (GGC→GAC)	pqqF ←	coenzyme PQQ synthesis protein F
RA	471,069	T→C	9.1%	intergenic (‑110/+18)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	471,070	G→A	9.4%	intergenic (‑111/+17)	PP_0386 ← / ← rpoD	sensory box protein/RNA polymerase sigma 70 factor
RA	476,700	A→C	7.9%	Q330P (CAG→CCG) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	476,701	G→T	10.3%	Q330H (CAG→CAT) ‡	tsaD →	tRNA N6‑adenosine(37)‑threonylcarbamoyltransferase complex transferase subunit TsaD
RA	503,828	Δ1 bp	11.1%	intergenic (+28/‑123)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,834	A→T	10.9%	intergenic (+34/‑117)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,835	A→T	10.9%	intergenic (+35/‑116)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,840:1	+C	10.9%	intergenic (+40/‑111)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	503,852	C→T	12.8%	intergenic (+52/‑99)	PP_0414 → / → rpe	polyamine ABC transporter permease/ribulose‑5‑phosphate 3‑epimerase
RA	524,352	G→C	9.8%	intergenic (+216/‑600)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	524,355	G→C	9.9%	intergenic (+219/‑597)	tyrS → / → PP_16SC	tyrosine‑‑tRNA ligase/16S ribosomal RNA
RA	537,575	G→T	7.1%	intergenic (+102/‑51)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	537,582	C→G	7.4%	intergenic (+109/‑44)	PP_mr07 → / → rpoB	P26 ncRNA/DNA‑directed RNA polymerase subunit beta
RA	558,260	C→A	7.3%	T129T (ACC→ACA)	rplF →	50S ribosomal protein L6
RA	571,620	G→A	15.8%	intergenic (+43/+48)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	571,621	T→C	15.4%	intergenic (+44/+47)	ssb → / ← PP_0486	single‑stranded DNA‑binding protein/GntR family transcriptional regulator
RA	579,601	A→T	6.2%	D207V (GAC→GTC)	fdoI →	formate dehydrogenase‑O subunit gamma
RA	579,603	A→T	6.2%	K208* (AAG→TAG) ‡	fdoI →	formate dehydrogenase‑O subunit gamma
RA	579,604	A→T	6.1%	K208M (AAG→ATG) ‡	fdoI →	formate dehydrogenase‑O subunit gamma
RA	579,606	A→T	5.9%	T209S (ACG→TCG)	fdoI →	formate dehydrogenase‑O subunit gamma
RA	604,575	T→C	7.4%	V135A (GTC→GCC)	nusB →	transcription antitermination protein
RA	624,537	T→G	5.1%	K125Q (AAG→CAG)	PP_0537 ←	transcriptional regulator
RA	625,065	C→T	9.6%	intergenic (‑156/+27)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,066	A→T	9.3%	intergenic (‑157/+26)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,067	A→T	9.3%	intergenic (‑158/+25)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	625,068	A→G	9.3%	intergenic (‑159/+24)	PP_0537 ← / ← ppa	transcriptional regulator/inorganic pyrophosphatase
RA	644,143	G→C	6.5%	R293G (CGC→GGC)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	644,144	G→C	7.0%	A292A (GCC→GCG)	acoA ←	acetoin:2,6‑dichlorophenolindophenol oxidoreductase subunit alpha
RA	648,882	A→G	7.1%	C267R (TGC→CGC)	accC ←	acetyl‑CoA carboxylase biotin carboxylase subunit
RA	648,883	C→T	7.2%	A266A (GCG→GCA)	accC ←	acetyl‑CoA carboxylase biotin carboxylase subunit
RA	654,406	T→G	6.8%	K114Q (AAG→CAG)	ctpL ←	methyl‑accepting chemotaxis protein CtpL
RA	664,902	T→C	7.5%	S589P (TCG→CCG)	yfhM →	lipoprotein
RA	680,674	C→T	8.8%	P64L (CCG→CTG)	PP_0583 →	AraC family transcriptional regulator
RA	680,677	A→G	9.0%	Q65R (CAG→CGG)	PP_0583 →	AraC family transcriptional regulator
RA	693,593	C→G	9.2%	G151A (GGC→GCC)	PP_0595 ←	LysR family transcriptional regulator
RA	697,217	T→C	19.8%	intergenic (+141/‑610)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,228	C→G	18.6%	intergenic (+152/‑599)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	697,231	C→G	17.6%	intergenic (+155/‑596)	mmsA‑I → / → PP_16SD	methylmalonate‑semialdehyde dehydrogenase/16S ribosomal RNA
RA	699,725	A→G	33.1%	intergenic (+115/‑129)	PP_t06 → / → PP_23SD	tRNA‑Ala/23S ribosomal RNA
RA	733,851	G→A	6.8%	intergenic (+18/+173)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,852	C→T	8.0%	intergenic (+19/+172)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	733,853	A→G	6.8%	intergenic (+20/+171)	PP_t11 → / ← ndh	tRNA‑Lys/NADH dehydrogenase
RA	780,559	A→C	9.5%	intergenic (‑86/+36)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,561	T→A	9.5%	intergenic (‑88/+34)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	780,563	G→T	9.5%	intergenic (‑90/+32)	PP_0670 ← / ← glyA‑II	bile acid/Na+ symporter family transporter/serine hydroxymethyltransferase
RA	782,158	C→A	7.4%	P1257P (CCG→CCT)	PP_0672 ←	sensory box protein
RA	788,586	A→T	9.8%	intergenic (+33/‑180)	ettA → / → gdhA	ADP/ATP ratio sensor/translation inhibitor/NADP‑dependent glutamate dehydrogenase
RA	796,844	G→A	8.1%	intergenic (+43/‑147)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	796,845:1	+A	6.6%	intergenic (+44/‑146)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	796,845:2	+C	6.6%	intergenic (+44/‑146)	PP_0681 → / → PP_0682	hypothetical protein/inner membrane protein
RA	798,632	T→A	7.7%	L201Q (CTG→CAG)	fklB‑I →	FKBP‑type peptidyl‑prolyl cis‑trans isomerase
RA	799,838	A→T	10.7%	L213Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	799,844	T→A	16.7%	D211V (GAC→GTC)	ispB ←	octaprenyl diphosphate synthase
RA	799,850	A→T	10.8%	L209Q (CTG→CAG)	ispB ←	octaprenyl diphosphate synthase
RA	838,006	Δ1 bp	9.5%	intergenic (‑39/+41)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	838,010:1	+C	9.5%	intergenic (‑43/+37)	pth ← / ← rplY	peptidyl‑tRNA hydrolase/50S ribosomal protein L25/general stress protein Ctc
RA	868,513	G→A	7.7%	L360L (CTG→TTG)	mqo‑I ←	malate:quinone oxidoreductase
RA	895,210	G→C	11.3%	intergenic (+47/+17)	PP_0777 → / ← PP_0778	glutathione peroxidase/group 1 family glycosyl transferase
RA	895,829	G→A	7.6%	R197C (CGC→TGC)	PP_0778 ←	group 1 family glycosyl transferase
RA	913,440	G→T	10.0%	A50S (GCC→TCC)	fruA →	PTS fructose transporter subunit IIBC
RA	922,759	T→G	8.9%	Q91P (CAG→CCG) ‡	PP_0803 ←	protein secretion ABC transporter permease
RA	922,760	G→C	10.3%	Q91E (CAG→GAG) ‡	PP_0803 ←	protein secretion ABC transporter permease
RA	946,922	C→A	8.0%	Q150H (CAG→CAT)	norR ←	DNA‑binding transcriptional regulator
RA	955,151	Δ1 bp	10.8%	intergenic (+102/‑211)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,155	T→A	16.0%	intergenic (+106/‑207)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,156	T→A	10.6%	intergenic (+107/‑206)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,158:1	+T	11.1%	intergenic (+109/‑204)	cyoE → / → alaC	protoheme IX farnesyltransferase/aminotransferase
RA	955,586	C→G	6.2%	G75G (GGC→GGG)	alaC →	aminotransferase
RA	970,240	T→G	6.2%	F29C (TTC→TGC)	tgt →	queuine tRNA‑ribosyltransferase
RA	971,680	C→T	9.7%	intergenic (+32/‑32)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,681	A→T	9.5%	intergenic (+33/‑31)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	971,682	A→G	9.6%	intergenic (+34/‑30)	yajC → / → secD	protein translocase subunit YajC/protein translocase subunit SecD
RA	975,290	A→T	7.2%	intergenic (+136/+33)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	975,291	A→T	7.2%	intergenic (+137/+32)	ycfJ → / ← suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
RA	977,876	T→A	8.0%	intergenic (+39/‑141)	cysE → / → iscR	serine acetyltransferase/DNA‑binding transcriptional regulator IscR
RA	1,011,482	T→A	15.1%	intergenic (‑417/‑110)	PP_0871 ← / → prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA	1,011,483	T→A	15.2%	intergenic (‑418/‑109)	PP_0871 ← / → prfC	glycine betaine/carnitine/choline ABC transporter permease/peptide chain release factor 3
RA	1,024,096	C→T	6.0%	G352S (GGC→AGC)	opdP ←	glycine‑glutamate dipeptide porin
RA	1,033,602	T→A	9.1%	G73G (GGT→GGA)	PP_0891 →	hypothetical protein
RA	1,033,605	T→A	6.7%	I74I (ATT→ATA)	PP_0891 →	hypothetical protein
RA	1,037,765	T→C	8.3%	intergenic (+7/+109)	PP_0896 → / ← PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
RA	1,037,772	C→T	5.9%	intergenic (+14/+102)	PP_0896 → / ← PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
RA	1,037,773	T→G	5.7%	intergenic (+15/+101)	PP_0896 → / ← PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
RA	1,047,416	G→T	7.0%	A322D (GCC→GAC)	PP_0906 ←	RND family multidrug transporter
RA	1,070,265	G→C	10.3%	intergenic (+62/+82)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,070,268	G→C	10.4%	intergenic (+65/+79)	aroP‑I → / ← PP_0928	aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein
RA	1,102,762	C→A	5.3%	R67R (CGG→AGG)	ttg2E →	toluene‑tolerance protein
RA	1,126,604	T→A	5.5%	intergenic (‑53/+97)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,126,605	T→A	5.5%	intergenic (‑54/+96)	tdcG‑II ← / ← gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
RA	1,129,437	A→T	8.1%	A40A (GCT→GCA)	gcvP‑I ←	glycine dehydrogenase
RA	1,130,198	A→T	10.5%	intergenic (‑247/+57)	gcvH‑I ← / ← PP_0990	glycine cleavage system protein H/DoxX family protein
RA	1,145,439	C→T	9.4%	intergenic (‑100/+41)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,446	G→A	9.1%	intergenic (‑107/+34)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,447	T→C	7.7%	intergenic (‑108/+33)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,145,454	A→G	8.0%	intergenic (‑115/+26)	hemO ← / ← PP_1006	heme oxygenase/heme receptor
RA	1,169,964	T→C	6.7%	D151G (GAC→GGC)	leuA ←	2‑isopropylmalate synthase
RA	1,202,863	G→T	7.8%	R229L (CGG→CTG)	xcpY →	type II secretion pathway protein XcpY
RA	1,219,147	G→A	7.0%	P226P (CCG→CCA)	PP_1064 →	alpha/beta family hydrolase
RA	1,241,968:1	+T	8.9%	intergenic (+27/+31)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,241,973	Δ1 bp	9.1%	intergenic (+32/+26)	grxD → / ← bfr‑II	monothiol glutaredoxin/bacterioferritin
RA	1,244,374	A→G	12.5%	G39G (GGT→GGC) ‡	rnt ←	ribonuclease T
RA	1,244,375	C→G	12.1%	G39A (GGT→GCT) ‡	rnt ←	ribonuclease T
RA	1,244,376	C→T	12.5%	G39S (GGT→AGT) ‡	rnt ←	ribonuclease T
RA	1,253,435	G→C	7.5%	intergenic (‑75/+32)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,437	A→T	6.7%	intergenic (‑77/+30)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,253,439	G→C	6.9%	intergenic (‑79/+28)	PP_1096 ← / ← metG	electron transport complex protein/methionine‑‑tRNA ligase
RA	1,265,834	G→C	6.9%	A720A (GCC→GCG)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,265,838	A→G	6.8%	L719P (CTT→CCT)	quiP ←	acyl‑homoserine lactone acylase QuiP
RA	1,295,019	Δ1 bp	13.6%	intergenic (+29/+41)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,024	T→A	13.0%	intergenic (+34/+36)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,027	T→A	13.1%	intergenic (+37/+33)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,295,031:1	+T	11.1%	intergenic (+41/+29)	slyB → / ← nhaA‑I	outer membrane lipoprotein/Na(+)/H(+) antiporter NhaA
RA	1,311,740	T→A	8.9%	intergenic (‑202/+76)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,311,741	C→G	7.8%	intergenic (‑203/+75)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,311,752	G→C	7.7%	intergenic (‑214/+64)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,311,756	C→G	7.9%	intergenic (‑218/+60)	PP_1144 ← / ← rapA	membrane protein/RNA polymerase‑associated protein RapA
RA	1,327,127	C→T	55.4%	intergenic (+97/‑196)	PP_16SE → / → PP_23SE	16S ribosomal RNA/23S ribosomal RNA
RA	1,338,358	Δ1 bp	9.3%	coding (1068/2037 nt)	PP_1163 →	FAD‑binding oxidoreductase
RA	1,375,668	G→A	8.7%	A428T (GCC→ACC)	kup →	potassium transport system protein Kup
RA	1,403,596	G→A	33.2%	intergenic (‑56/+25)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,403,597	T→C	33.4%	intergenic (‑57/+24)	PP_1227 ← / ← PP_1228	membrane protein/methyl‑accepting chemotaxis transducer
RA	1,416,940	A→C	12.3%	H61P (CAC→CCC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,942	G→A	12.2%	V62M (GTG→ATG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,947	T→C	12.5%	H63H (CAT→CAC)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,416,949	G→T	12.5%	G64V (GGG→GTG)	PP_1239 →	metallo‑beta‑lactamase family protein
RA	1,425,657	T→C	7.1%	intergenic (+52/‑453)	PP_1249 → / → PP_1250	DUF4223 domain‑containing protein/group II intron‑encoding maturase
RA	1,458,124	T→G	9.4%	intergenic (+17/+23)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,126	A→T	7.7%	intergenic (+19/+21)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,458,128	C→A	8.8%	intergenic (+21/+19)	PP_1276 → / ← algA	hypothetical protein/mannose‑6‑phosphate isomerase/mannose‑1‑phosphate guanylyltransferase
RA	1,471,405	A→C	7.6%	S477A (TCG→GCG)	alg8 ←	glycosyltransferase Alg8
RA	1,475,002	T→G	16.2%	intergenic (‑775/+26)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,475,003	C→A	14.7%	intergenic (‑776/+25)	algD ← / ← PP_1289	GDP‑mannose 6‑dehydrogenase/DUF328 domain‑containing protein
RA	1,484,187	C→A	10.8%	G86G (GGC→GGA)	yhdX →	amino acid ABC transporter permease
RA	1,512,188	G→A	6.8%	A135T (GCG→ACG)	rsmI →	16S rRNA 2'‑O‑ribose C1402 methyltransferase
RA	1,522,170	G→T	8.1%	P12P (CCG→CCT)	ftsW →	lipid II flippase
RA	1,528,549	G→A	11.3%	R283H (CGC→CAC)	ftsA →	cell division protein FtsA
RA	1,534,931	T→C	6.8%	intergenic (+80/‑103)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,935	C→T	6.8%	intergenic (+84/‑99)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,940	A→G	6.5%	intergenic (+89/‑94)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,944	G→A	6.9%	intergenic (+93/‑90)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,950	A→G	6.8%	intergenic (+99/‑84)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,954	T→C	7.0%	intergenic (+103/‑80)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,534,961	G→A	7.0%	intergenic (+110/‑73)	secA → / → argJ	protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
RA	1,544,531	C→A	14.6%	intergenic (+48/+66)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,534	G→C	14.3%	intergenic (+51/+63)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,536	C→G	15.6%	intergenic (+53/+61)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,541	C→G	15.6%	intergenic (+58/+56)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,543	G→C	15.6%	intergenic (+60/+54)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,544,546	T→G	14.7%	intergenic (+63/+51)	mdfA → / ← ampG	multidrug MFS transporter/muropeptide permease AmpG
RA	1,551,324	G→T	16.3%	intergenic (+41/+85)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,551,327	A→C	17.0%	intergenic (+44/+82)	groL → / ← pykA	chaperonin GroEL/pyruvate kinase II
RA	1,561,787	G→A	7.8%	P116S (CCC→TCC)	pctA ←	methyl‑accepting chemotaxis protein PctA
RA	1,563,869	G→T	7.8%	intergenic (+93/+29)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,563,870	A→C	9.0%	intergenic (+94/+28)	PP_1372 → / ← pitB	hypothetical protein/phosphate transporter
RA	1,592,007	G→C	11.6%	intergenic (‑72/‑131)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,024	C→A	20.0%	intergenic (‑89/‑114)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,592,029	T→G	19.8%	intergenic (‑94/‑109)	PP_1395 ← / → PP_1396	AraC family transcriptional regulator/hypothetical protein
RA	1,605,889	A→C	6.0%	L135R (CTG→CGG)	PP_1407 ←	sulfate transporter
RA	1,619,489	A→T	11.9%	L263Q (CTG→CAG)	opdH ←	tricarboxylate‑specific outer membrane porin
RA	1,637,367	A→T	10.3%	intergenic (+34/+32)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,637,368	A→T	10.0%	intergenic (+35/+31)	pdxJ → / ← PP_1437	pyridoxine 5'‑phosphate synthase/heavy metal sensor histidine kinase
RA	1,639,173	C→T	6.5%	A94T (GCG→ACG)	czcR‑III ←	response regulator
RA	1,642,306	G→A	8.0%	intergenic (‑92/+60)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,313	G→C	10.0%	intergenic (‑99/+53)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,319	Δ1 bp	5.8%	intergenic (‑105/+47)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,321:1	+C	5.9%	intergenic (‑107/+45)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,327	G→C	10.1%	intergenic (‑113/+39)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,334	T→C	11.7%	intergenic (‑120/+32)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,343	G→A	8.9%	intergenic (‑129/+23)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,642,345	C→T	8.8%	intergenic (‑131/+21)	PP_1442 ← / ← lon‑I	hypothetical protein/DNA‑binding ATP‑dependent protease
RA	1,647,971	Δ1 bp	34.6%	coding (793/1335 nt)	oprB‑II ←	carbohydrate‑selective porin
RA	1,648,067	G→A	9.1%	L233F (CTC→TTC)	oprB‑II ←	carbohydrate‑selective porin
RA	1,672,777	C→A	7.9%	E52* (GAG→TAG)	PP_1467 ←	NhaP‑type Na+(K+)/H+ antiporter
RA	1,681,711	C→G	7.3%	A63G (GCC→GGC)	recJ →	ssDNA‑specific exonuclease RecJ
RA	1,686,260	C→G	8.3%	L187L (CTG→CTC)	patD ←	medium chain aldehyde dehydrogenase
RA	1,686,265	C→G	8.3%	E186Q (GAG→CAG)	patD ←	medium chain aldehyde dehydrogenase
RA	1,691,814	T→C	9.8%	intergenic (+39/‑132)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,815	C→G	10.0%	intergenic (+40/‑131)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,825	C→A	15.9%	intergenic (+50/‑121)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,828	T→G	15.8%	intergenic (+53/‑118)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,838	C→G	13.7%	intergenic (+63/‑108)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,691,839	G→A	13.8%	intergenic (+64/‑107)	PP_1487 → / → PP_1488	hypothetical protein/methyl‑accepting chemotaxis transducer
RA	1,693,877	A→C	7.6%	I102L (ATC→CTC)	PP_1489 →	CheW domain‑containing protein
RA	1,693,881	T→A	7.6%	L103Q (CTG→CAG)	PP_1489 →	CheW domain‑containing protein
RA	1,698,793:1	+T	6.7%	coding (499/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,698,797	Δ1 bp	6.6%	coding (503/1014 nt)	cheBC →	chemotaxis response regulator protein‑glutamate methylesterase
RA	1,699,544	C→A	8.7%	P63H (CCC→CAC)	PP_1494 →	GGDEF domain‑containing response regulator
RA	1,703,294:1	+T	11.7%	intergenic (+101/‑66)	lysS → / → PP_1497	lysine‑‑tRNA ligase/TetR family transcriptional regulator
RA	1,707,269	G→C	15.1%	intergenic (+45/+97)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,707,272	G→C	15.9%	intergenic (+48/+94)	PP_1501 → / ← PP_1502	hypothetical protein/OmpA family protein
RA	1,712,993	T→A	18.8%	intergenic (+34/‑106)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,712,994	T→A	18.7%	intergenic (+35/‑105)	adk → / → tsaB	adenylate kinase/endopeptidase
RA	1,726,520	T→C	9.3%	Q562Q (CAA→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,527	A→T	14.1%	L560Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,530	A→T	14.5%	L559Q (CTG→CAG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,726,537	G→A	8.2%	L557L (CTG→TTG)	plsB ←	glycerol‑3‑phosphate acyltransferase
RA	1,732,715	C→A	7.1%	E399D (GAG→GAT)	PP_1526 ←	beta‑(1‑3)‑glucosyl transferase
RA	1,741,382	G→A	7.4%	N191N (AAC→AAT)	PP_1538 ←	hypothetical protein
RA	1,761,969	A→T	10.4%	N359Y (AAC→TAC) ‡	PP_1567 →	capsid protein
RA	1,761,970	A→T	10.4%	N359I (AAC→ATC) ‡	PP_1567 →	capsid protein
RA	1,786,064	T→A	17.0%	intergenic (+38/‑148)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,065	T→A	17.0%	intergenic (+39/‑147)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,786,066	T→A	17.0%	intergenic (+40/‑146)	rpsB → / → tsf	30S ribosomal protein S2/elongation factor Ts
RA	1,810,377	T→G	7.8%	intergenic (+96/‑73)	eno → / → ftsB	enolase/cell division protein
RA	1,818,526	A→G	12.3%	Y209C (TAC→TGC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,531	C→T	10.7%	H211Y (CAT→TAT)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,534	A→G	10.1%	N212D (AAC→GAC)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,818,539	C→T	9.8%	R213R (CGC→CGT)	PP_1622 →	M23B subfamily metallopeptidase
RA	1,822,230	G→T	8.8%	intergenic (+30/+28)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,822,231	A→T	10.4%	intergenic (+31/+27)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,822,232	A→C	10.6%	intergenic (+32/+26)	PP_mr22 → / ← fdxA	PrrB_RsmZ ncRNA/ferredoxin 1
RA	1,825,746	C→G	7.3%	C97W (TGC→TGG)	PP_1627 →	hypothetical protein
RA	1,825,749	C→A	7.4%	A98A (GCC→GCA)	PP_1627 →	hypothetical protein
RA	1,825,752	T→G	8.6%	I99M (ATT→ATG)	PP_1627 →	hypothetical protein
RA	1,825,755	C→G	7.0%	A100A (GCC→GCG)	PP_1627 →	hypothetical protein
RA	1,832,443	G→A	8.3%	P130P (CCG→CCA)	PP_1635 →	two‑component system response regulator
RA	1,852,269	C→T	75.5%	A438V (GCC→GTC)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,852,271	T→C	23.7%	Y439H (TAC→CAC)	relA →	ATP:GTP 3'‑pyrophosphotransferase
RA	1,853,787	G→C	6.2%	R156P (CGG→CCG)	mazG →	modified nucleoside triphosphate pyrophosphohydrolase
RA	1,859,569	A→C	6.6%	intergenic (‑119/+37)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,859,571	T→A	6.4%	intergenic (‑121/+35)	PP_1662 ← / ← PP_1663	hypothetical protein/hypothetical protein
RA	1,870,187	G→T	11.3%	G112V (GGC→GTC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,870,190	A→C	11.6%	D113A (GAC→GCC)	cobD →	Subunit of adenosylcobinamide‑phosphate synthase beta component
RA	1,875,278	G→T	9.1%	Q165H (CAG→CAT)	PP_1680 →	alpha‑ribazole‑5'‑phosphate phosphatase
RA	1,888,711	C→T	13.6%	S535N (AGC→AAC)	PP_1695 ←	sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator
RA	1,897,181	T→A	11.5%	noncoding (9/52 nt)	PP_mr24 ←	mini‑ykkC regulatory region
RA	1,897,184	T→A	11.4%	noncoding (6/52 nt)	PP_mr24 ←	mini‑ykkC regulatory region
RA	1,901,803	A→T	11.5%	D771V (GAC→GTC)	PP_1703 →	assimilatory nitrate reductase/sulfite reductase
RA	1,905,536	C→A	9.7%	P583P (CCC→CCA)	nirB →	nitrite reductase large subunit
RA	1,909,517	C→A	8.7%	G446V (GGC→GTC)	PP_1710 ←	phthalate permease family MFS transporter
RA	1,915,631	G→A	8.3%	intergenic (+17/‑272)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,640:1	+A	8.7%	intergenic (+26/‑263)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,644	T→A	8.7%	intergenic (+30/‑259)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,915,647	Δ1 bp	8.7%	intergenic (+33/‑256)	fklB‑II → / → PP_1715	FKBP‑type peptidyl‑prolyl cis‑trans isomerase/hypothetical protein
RA	1,921,591	T→A	18.0%	intergenic (+24/+37)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,921,592	T→A	18.0%	intergenic (+25/+36)	PP_1720 → / ← PP_1721	alcohol dehydrogenase/phosphoserine phosphatase
RA	1,928,591	T→C	6.5%	M515V (ATG→GTG)	PP_1728 ←	membrane protein
RA	1,938,882	C→T	7.7%	E73K (GAG→AAG)	PP_1738 ←	hypothetical protein
RA	1,938,896	A→G	7.5%	L68S (TTG→TCG)	PP_1738 ←	hypothetical protein
RA	1,952,761	G→T	6.9%	L275M (CTG→ATG)	mnmC ←	methyltransferase/FAD‑dependent oxidoreductase
RA	1,955,242	C→T	8.1%	intergenic (+29/‑164)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,252	T→A	12.2%	intergenic (+39/‑154)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,955,253	T→A	12.8%	intergenic (+40/‑153)	PP_1752 → / → PP_1753	hypothetical protein/DMT superfamily permease
RA	1,964,757	A→T	5.5%	Q309L (CAG→CTG)	yegE →	phosphodiesterase domain‑containing diguanylate cyclase
RA	1,968,711	G→C	9.1%	R51G (CGC→GGC)	gph ←	phosphoglycolate phosphatase
RA	1,968,712	G→C	9.4%	A50A (GCC→GCG)	gph ←	phosphoglycolate phosphatase
RA	1,970,762:1	+G	5.5%	intergenic (+13/‑253)	mtnA → / → PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
RA	2,049,188	G→T	6.8%	L43M (CTG→ATG)	PP_1822 ←	hypothetical protein
RA	2,049,346	G→T	10.2%	intergenic (‑32/+28)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,049,347	A→C	9.6%	intergenic (‑33/+27)	PP_1822 ← / ← folEA‑I	hypothetical protein/GTP cyclohydrolase I
RA	2,050,224	G→T	6.1%	T109T (ACC→ACA)	PP_1824 ←	Smr domain‑containing protein
RA	2,066,126	C→A	9.5%	P186Q (CCG→CAG)	PP_1842 →	class I glutamine amidotransferase
RA	2,092,469	T→A	5.7%	intergenic (+72/+19)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,092,470	T→A	6.8%	intergenic (+73/+18)	deaD → / ← ygiD	ATP‑dependent DEAD‑box RNA helicase DeaD/4,5‑DOPA‑dioxygenase
RA	2,095,232	G→C	15.4%	intergenic (‑240/+77)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,095,235	G→C	11.2%	intergenic (‑243/+74)	htpX ← / ← alaA	protease HtpX/glutamate‑pyruvate aminotransferase
RA	2,109,062	A→T	7.7%	I104N (ATT→AAT)	PP_1881 ←	hypothetical protein
RA	2,138,452	T→G	6.9%	L171R (CTG→CGG)	yadG →	ABC transporter ATP‑binding protein
RA	2,139,587	A→G	7.0%	T240A (ACT→GCT)  S193S (AGT→AGC)	yadH → PP_5481 ←	ABC transporter permease hypothetical protein
RA	2,151,401	C→T	9.3%	I14I (ATC→ATT)	rluC →	ribosomal large subunit pseudouridine synthase C
RA	2,154,429	T→G	6.2%	Q129P (CAG→CCG)	PP_1909 ←	septum formation protein
RA	2,154,434	T→A	5.9%	Q127H (CAA→CAT)	PP_1909 ←	septum formation protein
RA	2,158,088	G→A	7.6%	R132H (CGT→CAT)	fabG →	3‑oxoacyl‑ACP reductase subunit
RA	2,222,161	C→T	7.0%	E167E (GAG→GAA)	PP_1961 ←	hypothetical protein
RA	2,237,053	A→C	11.0%	intergenic (+105/+23)	uvrB → / ← PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
RA	2,243,821	C→A	8.1%	L266M (CTG→ATG)	PP_1979 →	hydrolase
RA	2,250,031	A→T	9.5%	L184Q (CTG→CAG)	PP_1984 ←	LysR family transcriptional regulator
RA	2,273,095	A→G	10.4%	intergenic (+17/+274)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,105	C→G	14.8%	intergenic (+27/+264)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,109	A→T	12.4%	intergenic (+31/+260)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,113	C→G	13.9%	intergenic (+35/+256)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,273,123	C→T	9.9%	intergenic (+45/+246)	PP_2003 → / ← PP_2004	hypothetical protein/AraC family transcriptional regulator
RA	2,275,079	A→C	5.0%	L152V (TTG→GTG)	PP_2005 ←	hypothetical protein
RA	2,275,080	G→T	5.0%	H151Q (CAC→CAA)	PP_2005 ←	hypothetical protein
RA	2,282,813	T→G	34.4%	intergenic (‑162/+67)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,817	G→C	37.2%	intergenic (‑166/+63)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,818	G→C	37.2%	intergenic (‑167/+62)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,282,822	C→A	34.6%	intergenic (‑171/+58)	PP_2010 ← / ← PP_2011	cytochrome b561/hypothetical protein
RA	2,295,181	G→T	7.1%	A272S (GCG→TCG)	ppgL →	L‑alpha‑hydroxyglutaric acid gamma‑lactonase
RA	2,315,535	T→C	8.3%	K154E (AAG→GAG)	PP_2037 ←	aldolase
RA	2,315,536	G→A	8.3%	L153L (CTC→CTT)	PP_2037 ←	aldolase
RA	2,326,466	C→A	9.9%	R294M (AGG→ATG)	PP_2045 ←	metallo‑beta‑lactamase family protein
RA	2,335,490	T→C	14.0%	E337G (GAG→GGG)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,335,493	G→A	13.0%	P336L (CCC→CTC)	PP_2052 ←	bifunctional sugar‑phosphatase/mannitol‑1‑phosphate 5‑dehydrogenase
RA	2,347,661	G→C	12.4%	V307L (GTG→CTG) ‡	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,347,663	G→C	12.5%	V307V (GTG→GTC) ‡	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,347,665	G→C	12.3%	S308T (AGC→ACC)	PP_2064 →	multidrug RND transporter membrane fusion protein
RA	2,355,028	G→A	5.6%	S342S (AGC→AGT)	PP_2069 ←	multidrug MFS transporter outer membrane protein
RA	2,357,816	C→T	10.3%	E180K (GAA→AAA)	PP_2072 ←	AraC family transcriptional regulator
RA	2,381,445	T→G	14.7%	intergenic (+31/+56)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,381,446	C→A	15.4%	intergenic (+32/+55)	oprF → / ← cobA	porin F/uroporphyrinogen‑III C‑methyltransferase
RA	2,383,246	C→G	5.8%	G232R (GGC→CGC)	PP_2091 ←	serine/threonine‑protein kinase
RA	2,407,993	G→T	8.2%	A205A (GCC→GCA)	PP_2111 ←	aerotaxis receptor
RA	2,412,947	G→C	7.7%	intergenic (+168/‑253)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,412,948	G→C	8.7%	intergenic (+169/‑252)	rlmM → / → PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
RA	2,416,597	A→T	8.5%	intergenic (+87/+28)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,416,598	A→T	8.5%	intergenic (+88/+27)	pdxB → / ← PP_2118	erythronate‑4‑phosphate dehydrogenase/hypothetical protein
RA	2,420,641	Δ1 bp	8.3%	intergenic (+81/+26)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,420,645:1	+T	8.2%	intergenic (+85/+22)	ctpH → / ← PP_t62	methyl‑accepting chemotaxis protein CtpH/tRNA‑Pro
RA	2,428,343	G→A	7.4%	L75L (CTG→CTA)	PP_2128 →	CheV‑like chemotaxis protein
RA	2,439,333	G→T	8.3%	V11F (GTC→TTC)	pcaF‑II →	beta‑ketoadipyl‑CoA thiolase subunit beta
RA	2,445,401	G→C	19.0%	R52G (CGC→GGC)	lexA‑I ←	transcriptional repressor
RA	2,445,402	G→C	19.0%	A51A (GCC→GCG)	lexA‑I ←	transcriptional repressor
RA	2,462,973	T→A	13.7%	L229Q (CTG→CAG)	lolD →	lipoprotein‑releasing system ATP‑binding protein LolD
RA	2,470,656	Δ1 bp	7.6%	coding (178/1182 nt)	PP_2165 →	two‑component system response regulator
RA	2,479,566	C→A	7.8%	S180I (AGC→ATC)	PP_2173 ←	AraC family transcriptional regulator
RA	2,481,319	A→C	7.4%	L24R (CTG→CGG)	PP_2175 ←	3‑oxoacyl‑ACP reductase
RA	2,481,326	G→T	8.8%	R22R (CGG→AGG)	PP_2175 ←	3‑oxoacyl‑ACP reductase
RA	2,487,373	A→G	10.5%	D127G (GAC→GGC)	PP_2181 →	Cro/CI family transcriptional regulator
RA	2,488,255	G→C	6.3%	intergenic (+68/‑334)	PP_2182 → / → PP_2183	hypothetical protein/formate dehydrogenase subunit gamma
RA	2,574,663	T→C	8.2%	M459T (ATG→ACG)	PP_2257 →	aerotaxis receptor
RA	2,586,840	C→T	8.7%	Y54Y (TAC→TAT)	PP_2266 →	DNA‑directed RNA polymerase
RA	2,601,223	C→T	6.1%	L219L (CTC→CTT)	PP_2279 →	head‑to‑tail joining protein
RA	2,601,224	A→G	6.1%	K220E (AAG→GAG)	PP_2279 →	head‑to‑tail joining protein
RA	2,610,874	G→T	7.8%	E658* (GAG→TAG)	PP_2286 →	hypothetical protein
RA	2,628,231	A→T	7.1%	K425* (AAG→TAG) ‡	tig →	trigger factor
RA	2,628,232	A→T	7.3%	K425M (AAG→ATG) ‡	tig →	trigger factor
RA	2,630,204	C→G	6.0%	A373G (GCC→GGC)	clpX →	ATP‑dependent Clp protease ATP‑binding subunit ClpX
RA	2,631,188	C→G	9.6%	Q204E (CAG→GAG)	lon‑II →	DNA‑binding ATP‑dependent protease
RA	2,653,305	G→A	6.2%	A217T (GCC→ACC)	PP_2325 →	2‑dehydropantoate 2‑reductase
RA	2,666,921	G→A	7.5%	L29L (CTG→CTA)	prpF →	aconitate isomerase
RA	2,718,585	G→C	6.6%	L254L (CTG→CTC)	PP_2377 →	acyltransferase
RA	2,739,749	G→C	7.5%	A695A (GCG→GCC)	PP_2395 →	leucine‑rich repeat‑containing protein
RA	2,742,960	C→T	9.8%	H5Y (CAC→TAC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,742,961	A→G	7.8%	H5R (CAC→CGC) ‡	PP_2397 →	EF hand domain‑containing protein
RA	2,744,285	C→T	10.2%	H203Y (CAC→TAC)	PP_2398 →	hypothetical protein
RA	2,784,316	C→T	6.4%	Y242Y (TAC→TAT)	PP_2437 →	acyl‑CoA dehydrogenase
RA	2,793,795	G→T	12.9%	intergenic (+61/+66)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,793,804	A→C	15.1%	intergenic (+70/+57)	PP_2445 → / ← PP_2446	membrane protein/hypothetical protein
RA	2,795,868	C→G	7.2%	E155Q (GAG→CAG)	puuB ←	gamma‑glutamylputrescine oxidase
RA	2,795,869	C→G	6.5%	L154L (CTG→CTC)	puuB ←	gamma‑glutamylputrescine oxidase
RA	2,799,214	A→G	9.1%	intergenic (‑185/+31)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,220	C→T	8.4%	intergenic (‑191/+25)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,223	A→G	9.0%	intergenic (‑194/+22)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,799,229	C→T	9.3%	intergenic (‑200/+16)	PP_2452 ← / ← ansB	hypothetical protein/glutaminase‑asparaginase
RA	2,810,646	T→G	8.9%	V337G (GTG→GGG)	thrS →	threonine‑‑tRNA ligase
RA	2,811,826	A→G	10.5%	K84E (AAA→GAA)	infC →	translation initiation factor IF‑3
RA	2,812,772	G→A	11.5%	intergenic (+23/‑87)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,774	T→C	11.5%	intergenic (+25/‑85)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,781	G→A	12.2%	intergenic (+32/‑78)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,783	T→C	11.7%	intergenic (+34/‑76)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,818	C→T	16.6%	intergenic (+69/‑41)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,821	C→G	16.6%	intergenic (+72/‑38)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,812,824	A→G	16.4%	intergenic (+75/‑35)	rplT → / → pheS	50S ribosomal protein L20/phenylalanine‑‑tRNA ligase subunit alpha
RA	2,879,625	G→A	8.5%	G161G (GGC→GGT)	PP_2534 ←	LysR family transcriptional regulator
RA	2,909,756	C→T	6.8%	S242N (AGC→AAC)	aprDA ←	alkaline protease secretion ABC transporter ATP‑binding protein
RA	2,910,534	G→A	9.3%	intergenic (‑54/‑490)	aprDA ← / → PP_2561	alkaline protease secretion ABC transporter ATP‑binding protein/hemolysin‑type calcium‑binding bacteriocin
RA	2,937,810	G→T	17.6%	R430S (CGC→AGC)	PP_2570 ←	transposase
RA	2,937,811	A→T	18.2%	L429L (CTT→CTA) ‡	PP_2570 ←	transposase
RA	2,937,812	A→C	22.1%	L429R (CTT→CGT) ‡	PP_2570 ←	transposase
RA	2,946,630	G→C	9.3%	P312R (CCG→CGG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,946,631	G→C	9.3%	P312A (CCG→GCG) ‡	yijP ←	phosphoethanolamine transferase CptA
RA	2,948,640	T→G	6.2%	D162A (GAC→GCC)	PP_2582 ←	heme oxygenase
RA	2,949,591	A→T	7.3%	K125I (AAA→ATA)	PP_2583 →	acetyltransferase
RA	2,951,377	G→C	13.8%	intergenic (‑113/+48)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,384	A→C	13.7%	intergenic (‑120/+41)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	2,951,385	G→T	13.7%	intergenic (‑121/+40)	oguA ← / ← PP_2585	8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase
RA	3,006,511	T→G	8.8%	F1017V (TTC→GTC)	PP_2627 →	membrane protein
RA	3,006,516	G→T	8.6%	L1018L (CTG→CTT)	PP_2627 →	membrane protein
RA	3,006,517	A→C	8.8%	K1019Q (AAG→CAG)	PP_2627 →	membrane protein
RA	3,006,522	C→A	8.5%	D1020E (GAC→GAA)	PP_2627 →	membrane protein
RA	3,030,456	C→G	9.1%	intergenic (+413/‑281)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,460	G→C	10.0%	intergenic (+417/‑277)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,030,463	G→C	9.5%	intergenic (+420/‑274)	pcaY → / → mgtA	aromatic acid chemoreceptor/ATP‑dependent magnesium transporter
RA	3,076,135	A→G	6.8%	intergenic (‑40/+34)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,137	T→G	7.0%	intergenic (‑42/+32)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,076,140	C→T	7.0%	intergenic (‑45/+29)	PP_2685 ← / ← PP_2686	hypothetical protein/transglutaminase domain‑containing protein
RA	3,077,683	G→T	9.5%	R71R (CGC→CGA)	PP_2687 ←	hypothetical protein
RA	3,079,678	C→T	8.7%	intergenic (‑370/+64)	PP_2688 ← / ← PP_2689	hypothetical protein/endoribonuclease
RA	3,101,122	T→C	8.3%	V127A (GTC→GCC)	PP_2710 →	hypothetical protein
RA	3,146,621	G→C	9.4%	intergenic (+14/+52)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,622	G→C	9.4%	intergenic (+15/+51)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,654	T→C	10.5%	intergenic (+47/+19)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,146,657	G→A	6.9%	intergenic (+50/+16)	PP_2761 → / ← sfnA	ribose ABC transporter permease/acyl‑CoA dehydrogenase/oxidase family protein
RA	3,149,976	T→A	8.9%	L13M (TTG→ATG) ‡	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,149,977	T→A	8.9%	L13* (TTG→TAG) ‡	PP_2766 →	long‑chain‑fatty acid‑‑CoA ligase‑like protein
RA	3,166,099	G→C	12.7%	G163A (GGC→GCC)	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,166,392	C→A	8.0%	L261I (CTC→ATC) ‡	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,166,393	T→G	7.9%	L261R (CTC→CGC) ‡	PP_2780 →	3‑oxoacyl‑ACP synthase
RA	3,218,704:1	+C	5.2%	intergenic (+44/+39)	oprJ → / ← nfxB	outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA	3,218,711	Δ1 bp	5.1%	intergenic (+51/+32)	oprJ → / ← nfxB	outer membrane protein OprJ/HTH‑type transcriptional regulator NfxB
RA	3,223,663:1	+C	8.6%	coding (314/681 nt)	PP_2824 ←	TetR family transcriptional regulator
RA	3,223,668	Δ1 bp	9.1%	coding (309/681 nt)	PP_2824 ←	TetR family transcriptional regulator
RA	3,252,535	G→A	9.4%	intergenic (+22/+221)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,252,540	T→C	9.8%	intergenic (+27/+216)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,252,594	T→A	6.8%	intergenic (+81/+162)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,252,595	T→A	6.8%	intergenic (+82/+161)	ureG → / ← PP_2851	urease accessory protein/hypothetical protein
RA	3,284,999	G→A	6.2%	C303C (TGC→TGT)	PP_2887 ←	catalase‑like peroxidase
RA	3,304,806	A→G	6.6%	intergenic (+16/+16)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,807	C→G	6.7%	intergenic (+17/+15)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,304,808	C→T	6.7%	intergenic (+18/+14)	cysS → / ← PP_2906	cysteine‑‑tRNA ligase/sensor histidine kinase
RA	3,309,743	C→T	7.4%	A272V (GCG→GTG)	lhgO →	L‑2‑hydroxyglutarate oxidase
RA	3,313,868	C→A	18.2%	intergenic (+30/‑129)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,313,871	T→G	17.8%	intergenic (+33/‑126)	hemB → / → proP	5‑aminolevulinate dehydratase/osmosensory proline/betaine/H+ permease
RA	3,344,389	C→G	10.6%	Q261H (CAG→CAC)	PP_2941 ←	hypothetical protein
RA	3,385,129	C→T	7.1%	E111K (GAG→AAG)	PP_2986 ←	oxidoreductase
RA	3,385,130	A→G	7.4%	L110L (CTT→CTC)	PP_2986 ←	oxidoreductase
RA	3,423,575	C→G	5.3%	P564A (CCA→GCA)	PP_3038 →	TraC domain‑containing protein
RA	3,457,102	T→G	5.8%	E77A (GAG→GCG)	hbdH ←	3‑hydroxybutyrate dehydrogenase
RA	3,463,073	G→C	8.1%	A443G (GCC→GGC)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,463,076	A→T	8.3%	L442Q (CTG→CAG)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,463,079	G→C	8.3%	A441G (GCC→GGC)	PP_3078 ←	ABC transporter substrate‑binding protein
RA	3,479,633	C→T	7.1%	L543L (TTG→TTA)	PP_3090 ←	OmpA domain‑containing protein
RA	3,492,218	C→T	6.5%	A82T (GCC→ACC)	PP_3096 ←	hypothetical protein
RA	3,503,749	G→A	6.2%	intergenic (‑401/+303)	PP_5572 ← / ← PP_5573	hypothetical protein/hypothetical protein
RA	3,528,609	T→A	6.7%	L128Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,528,612	T→A	6.7%	L129Q (CTG→CAG)	dnaEB →	error‑prone DNA polymerase
RA	3,542,361	A→G	7.7%	Y135Y (TAT→TAC)	galE ←	UDP‑glucose 4‑epimerase
RA	3,542,364	C→T	7.5%	P134P (CCG→CCA)	galE ←	UDP‑glucose 4‑epimerase
RA	3,570,586	T→C	8.3%	M108V (ATG→GTG)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,570,591	G→C	8.7%	P106R (CCG→CGG)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,570,596	G→A	8.7%	H104H (CAC→CAT)	sad‑II ←	NAD+‑dependent succinate semialdehyde dehydrogenase
RA	3,578,741	A→G	11.7%	N18D (AAC→GAC)	PP_5589 →	rhs repeat‑associated core domain‑containing protein
RA	3,584,942	A→C	11.4%	intergenic (+46/‑89)	benC → / → benD	benzoate 1,2‑dioxygenase electron transfer component/1,6‑dihydroxycyclohexa‑2,4‑diene‑1‑carboxylate dehydrogenase
RA	3,624,187	G→C	9.1%	intergenic (‑92/+81)	PP_3194 ← / ← PP_3195	hypothetical protein/hypothetical protein
RA	3,625,580	T→A	5.1%	intergenic (‑50/+27)	PP_3195 ← / ← PP_3196	hypothetical protein/nodulation protein d1
RA	3,641,930	C→A	8.0%	G440C (GGC→TGC)	PP_3209 ←	isoxanthopterin deaminase
RA	3,645,712	C→A	15.4%	E110* (GAA→TAA)	PP_3212 ←	Rieske 2Fe‑2S family protein
RA	3,646,064	G→T	9.1%	intergenic (‑25/+14)	PP_3212 ← / ← PP_3213	Rieske 2Fe‑2S family protein/ABC transporter substrate‑binding protein
RA	3,686,477	A→C	16.2%	D281A (GAC→GCC)	PP_3251 →	hypothetical protein
RA	3,686,479	C→T	16.6%	L282L (CTG→TTG)	PP_3251 →	hypothetical protein
RA	3,686,484	A→G	16.7%	Q283Q (CAA→CAG)	PP_3251 →	hypothetical protein
RA	3,686,486	G→T	14.5%	G284V (GGC→GTC)	PP_3251 →	hypothetical protein
RA	3,715,401	A→T	6.8%	D166E (GAT→GAA)	paaJ ←	3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase
RA	3,762,208	T→C	6.9%	L505L (TTG→CTG)	PP_3325 →	ferric siderophore receptor
RA	3,763,141	C→T	8.0%	A114V (GCG→GTG)	PP_3326 →	hypothetical protein
RA	3,763,446	A→T	6.2%	M216L (ATG→TTG)	PP_3326 →	hypothetical protein
RA	3,763,545	A→G	8.1%	intergenic (+22/+1653)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,547	G→C	7.9%	intergenic (+24/+1651)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,763,549	C→T	8.2%	intergenic (+26/+1649)	PP_3326 → / ← PP_3328	hypothetical protein/ring‑cleaving dioxygenase
RA	3,793,935	A→T	6.2%	L211M (TTG→ATG)	PP_3355 ←	beta‑ketothiolase
RA	3,793,940	A→T	6.2%	I209N (ATT→AAT)	PP_3355 ←	beta‑ketothiolase
RA	3,796,468	G→A	12.7%	T10I (ACC→ATC) ‡	fcs ←	feruloyl‑CoA‑synthetase
RA	3,796,469	T→C	11.3%	T10A (ACC→GCC) ‡	fcs ←	feruloyl‑CoA‑synthetase
RA	3,846,627	G→A	6.0%	T38T (ACC→ACT)	PP_3395 ←	LysR family transcriptional regulator
RA	3,851,001	A→C	5.7%	N147H (AAT→CAT)	PP_3398 →	curli fiber surface‑exposed nucleator CsgB
RA	3,853,822	A→G	7.6%	intergenic (+61/+21)	PP_3401 → / ← PP_3402	hypothetical protein/hypothetical protein
RA	3,882,857	A→G	10.2%	intergenic (+56/‑169)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,882,868	C→T	6.3%	intergenic (+67/‑158)	oprN → / → PP_3428	multidrug RND transporter outer membrane protein OprN/TPR repeat‑containing protein
RA	3,892,965	T→G	7.8%	H95Q (CAT→CAG)	rarD →	chloramphenicol‑sensitive protein
RA	3,920,314	A→G	10.2%	L499P (CTG→CCG)	acs ←	acyl‑CoA synthetase
RA	3,920,317	C→T	8.2%	R498Q (CGG→CAG)	acs ←	acyl‑CoA synthetase
RA	3,935,121	T→A	6.8%	E112D (GAA→GAT)	PP_3467 ←	sigma‑54 dependent transcriptional regulator
RA	3,935,126	T→A	6.5%	I111F (ATC→TTC)	PP_3467 ←	sigma‑54 dependent transcriptional regulator
RA	3,936,329	C→G	7.1%	A24G (GCC→GGC)	PP_3469 →	hypothetical protein
RA	3,941,651	C→T	6.4%	V142M (GTG→ATG)	PP_3477 ←	type II secretion protein
RA	3,957,995	G→A	6.9%	P812S (CCG→TCG)	mnxG ←	manganese‑oxidizing multicopper oxidase
RA	3,960,565	A→T	12.2%	intergenic (‑137/‑192)	mnxG ← / → PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
RA	3,962,620	Δ1 bp	9.1%	coding (774/1152 nt)	PP_3492 →	acyl‑CoA dehydrogenase
RA	3,962,626:1	+T	9.3%	coding (780/1152 nt)	PP_3492 →	acyl‑CoA dehydrogenase
RA	3,969,020	A→C	5.9%	I368I (ATA→ATC)	PP_3498 →	transposase
RA	3,980,198	T→A	7.0%	Q159H (CAA→CAT)	cobN ←	aerobic cobaltochelatase subunit CobN
RA	3,986,007	C→T	8.5%	D80D (GAC→GAT)	oplB →	5‑oxoprolinase B
RA	3,986,009	A→T	8.6%	D81V (GAC→GTC)	oplB →	5‑oxoprolinase B
RA	3,986,011	A→G	8.7%	I82V (ATC→GTC)	oplB →	5‑oxoprolinase B
RA	4,038,463	T→G	5.1%	L73R (CTG→CGG)	PP_3559 →	glycine betaine ABC transporter permease
RA	4,054,237:1	+T	6.3%	coding (767/1320 nt)	PP_3573 →	monooxygenase
RA	4,054,242	Δ1 bp	7.9%	coding (772/1320 nt)	PP_3573 →	monooxygenase
RA	4,143,926	T→A	10.5%	intergenic (+35/‑88)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,143,927	T→A	10.2%	intergenic (+36/‑87)	PP_3647 → / → PP_3648	oxidoreductase/carboxymuconolactone decarboxylase family protein
RA	4,150,676	C→A	12.9%	L79M (CTG→ATG)	PP_3655 →	cytosine/purine/uracil/thiamine/allantoin permease family protein
RA	4,160,705	G→C	8.0%	intergenic (+27/+94)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,160,706	G→C	7.8%	intergenic (+28/+93)	PP_3662 → / ← PP_3663	hypothetical protein/GGDEF domain‑containing protein
RA	4,162,143	T→C	12.3%	intergenic (‑43/+34)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,147	T→A	11.5%	intergenic (‑47/+30)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,148	T→A	11.5%	intergenic (‑48/+29)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,162,152	G→A	11.8%	intergenic (‑52/+25)	PP_3663 ← / ← pssA	GGDEF domain‑containing protein/CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
RA	4,166,929:1	+C	6.6%	coding (591/1212 nt)	creA ←	creatinase
RA	4,166,934	Δ1 bp	6.9%	coding (586/1212 nt)	creA ←	creatinase
RA	4,188,015:1	+A	8.8%	intergenic (+76/‑134)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,188,018	Δ1 bp	8.8%	intergenic (+79/‑131)	PP_3683 → / → PP_3684	hypothetical protein/hypothetical protein
RA	4,204,842	C→G	6.0%	R993P (CGC→CCC)	PP_3691 ←	DNA helicase‑related protein
RA	4,241,017	A→G	8.1%	I242I (ATT→ATC) ‡	PP_3718 ←	aminotransferase
RA	4,241,018	A→G	8.1%	I242T (ATT→ACT) ‡	PP_3718 ←	aminotransferase
RA	4,241,025	C→T	7.4%	V240M (GTG→ATG)	PP_3718 ←	aminotransferase
RA	4,241,026	C→T	7.6%	G239G (GGG→GGA)	PP_3718 ←	aminotransferase
RA	4,248,398	C→T	7.7%	R558H (CGC→CAC)	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,402	T→G	7.5%	M557L (ATG→CTG)	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,403	C→A	7.2%	Q556H (CAG→CAT)	PP_3724 ←	acyl‑CoA synthetase
RA	4,248,407	A→G	7.4%	V555A (GTG→GCG)	PP_3724 ←	acyl‑CoA synthetase
RA	4,250,427	G→T	6.3%	F274L (TTC→TTA)	PP_3725 ←	acyl‑CoA dehydrogenase
RA	4,254,998	G→A	5.1%	L392L (CTG→TTG)	PP_3728 ←	two‑component system sensor histidine kinase/response regulator
RA	4,260,665	C→G	6.5%	G714A (GGC→GCC)	PP_3734 ←	ABC transporter permease
RA	4,260,670	C→G	7.1%	R712R (CGG→CGC)	PP_3734 ←	ABC transporter permease
RA	4,260,675	C→G	7.2%	A711P (GCG→CCG)	PP_3734 ←	ABC transporter permease
RA	4,260,680	C→G	7.5%	G709A (GGC→GCC)	PP_3734 ←	ABC transporter permease
RA	4,271,854	T→C	8.6%	T206A (ACG→GCG)	PP_3742 ←	glutathione S‑transferase family protein
RA	4,271,857	G→A	8.8%	R205C (CGC→TGC)	PP_3742 ←	glutathione S‑transferase family protein
RA	4,282,396	C→A	10.1%	R293L (CGC→CTC)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,399	A→G	10.0%	L292P (CTG→CCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,402	C→T	10.4%	R291Q (CGG→CAG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,282,405	T→G	10.0%	E290A (GAG→GCG)	PP_3753 ←	AraC family transcriptional regulator
RA	4,301,115	C→T	10.9%	A79V (GCC→GTC)	PP_3774 →	hypothetical protein
RA	4,311,358	T→A	11.1%	F12I (TTT→ATT) ‡	PP_3784 →	hypothetical protein
RA	4,311,359	T→A	11.1%	F12Y (TTT→TAT) ‡	PP_3784 →	hypothetical protein
RA	4,340,119	A→T	14.8%	intergenic (+60/‑271)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,120	G→C	15.4%	intergenic (+61/‑270)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,125	A→G	16.7%	intergenic (+66/‑265)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,126	C→T	16.7%	intergenic (+67/‑264)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,127	A→G	16.7%	intergenic (+68/‑263)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,128	C→T	16.7%	intergenic (+69/‑262)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,133	G→C	15.4%	intergenic (+74/‑257)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,340,134	A→T	15.4%	intergenic (+75/‑256)	ribAB‑II → / → PP_3814	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/polyamine ABC transportersubstrate‑binding protein
RA	4,348,749	A→G	54.3%	intergenic (‑70/+404)	PP_3820 ← / ← galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
RA	4,353,340	C→G	5.4%	P141R (CCG→CGG)	yrpB →	2‑nitropropane dioxygenase
RA	4,360,328	Δ1 bp	9.5%	coding (838/1161 nt)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,333	G→C	10.3%	A278G (GCC→GGC)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,360,337:1	+G	10.5%	coding (829/1161 nt)	PP_3835 ←	two‑component system sensor histidine kinase
RA	4,370,527	G→A	9.5%	V59V (GTG→GTA)	PP_3847 →	LuxR family transcriptional regulator
RA	4,375,486	C→A	16.3%	A32S (GCG→TCG)	PP_5637 ←	hypothetical protein
RA	4,375,488	A→T	15.7%	V31D (GTC→GAC)	PP_5637 ←	hypothetical protein
RA	4,375,490	T→G	17.3%	R30R (CGA→CGC)	PP_5637 ←	hypothetical protein
RA	4,382,865	G→A	10.3%	intergenic (‑32/+230)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,382,866	T→C	10.1%	intergenic (‑33/+229)	PP_3857 ← / ← PP_3858	hypothetical protein/tail fiber protein
RA	4,389,586	Δ1 bp	5.6%	coding (1199/1956 nt)	PP_3865 ←	tail protein
RA	4,394,578	T→A	6.3%	V146V (GTA→GTT)	PP_3869 ←	sheath protein
RA	4,405,358	C→T	15.2%	G83R (GGG→AGG)	PP_3886 ←	hypothetical protein
RA	4,405,364	T→C	14.3%	M81V (ATG→GTG)	PP_3886 ←	hypothetical protein
RA	4,405,365	G→A	14.3%	H80H (CAC→CAT)	PP_3886 ←	hypothetical protein
RA	4,405,371	A→G	14.3%	P78P (CCT→CCC)	PP_3886 ←	hypothetical protein
RA	4,446,535	G→C	5.9%	Y358* (TAC→TAG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,446,538	G→C	7.0%	L357L (CTC→CTG)	nicC ←	6‑hydroxynicotinate 3‑monooxygenase
RA	4,480,610	C→A	5.5%	A145A (GCC→GCA)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,480,611	T→G	5.3%	C146G (TGC→GGC)	PP_3972 →	short‑chain dehydrogenase/reductase family oxidoreductase
RA	4,483,958	T→C	14.2%	L82S (TTG→TCG)	PP_3976 →	isochorismatase family hydrolase
RA	4,501,386	T→C	7.5%	noncoding (62/88 nt)	PP_t60 ←	tRNA‑Ser
RA	4,528,397	T→A	13.9%	intergenic (+28/‑48)	purB → / → PP_4017	adenylosuccinate lyase/hypothetical protein
RA	4,530,069	T→A	6.7%	intergenic (+31/‑137)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,530,070	T→A	6.7%	intergenic (+32/‑136)	PP_4018 → / → topB	acetyltransferase/DNA topoisomerase III
RA	4,557,073	T→G	13.3%	K150Q (AAG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,078	A→C	12.2%	L148R (CTG→CGG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,081	G→T	12.0%	P147Q (CCG→CAG)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,557,086	C→A	12.4%	L145L (CTG→CTT)	gntZ ←	6‑phosphogluconate dehydrogenase
RA	4,564,768	C→T	5.2%	intergenic (‑864/‑34)	vgrG‑III ← / → glgA	type VI secretion system protein/glycogen synthase
RA	4,564,769	A→G	5.5%	intergenic (‑865/‑33)	vgrG‑III ← / → glgA	type VI secretion system protein/glycogen synthase
RA	4,605,418	A→C	7.2%	Q263P (CAG→CCG)	PP_4077 →	hypothetical protein
RA	4,610,342	C→G	8.8%	I261M (ATC→ATG)	PP_4081 →	type IV/VI secretion system protein
RA	4,610,345	C→G	8.6%	A262A (GCC→GCG)	PP_4081 →	type IV/VI secretion system protein
RA	4,632,641	G→C	12.1%	noncoding (35/76 nt)	PP_t59 ←	tRNA‑Gly
RA	4,635,810	C→A	64.3%	intergenic (‑9/+55)	uvrY ← / ← PP_4100	BarA/UvrY two‑componenent system response regulator/Cro/CI family transcriptional regulator
RA	4,642,656	C→T	7.2%	Q185* (CAG→TAG) ‡	PP_4107 →	LysR family transcriptional regulator
RA	4,642,657	A→G	7.4%	Q185R (CAG→CGG) ‡	PP_4107 →	LysR family transcriptional regulator
RA	4,667,237	C→A	5.1%	G319G (GGC→GGA)	nuoL →	NADH‑quinone oxidoreductase subunit L
RA	4,669,408	A→G	7.4%	I412V (ATC→GTC)	nuoM →	NADH‑quinone oxidoreductase subunit M
RA	4,673,951	C→G	6.7%	A226G (GCC→GGC)	PP_4137 →	outer membrane siderophore receptor
RA	4,673,954	C→G	7.0%	A227G (GCC→GGC)	PP_4137 →	outer membrane siderophore receptor
RA	4,705,459	T→A	15.3%	intergenic (‑151/+26)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,460	T→A	15.3%	intergenic (‑152/+25)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,470	A→G	9.6%	intergenic (‑162/+15)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,705,471	G→A	9.4%	intergenic (‑163/+14)	kdpF ← / ← PP_4162	potassium‑transporting ATPase subunit F/membrane protein
RA	4,708,858	T→A	8.9%	H104L (CAC→CTC)	PP_4165 ←	hypothetical protein
RA	4,717,873	G→A	85.1%	R131H (CGC→CAC)	fabB →	3‑oxoacyl‑ACP synthase
RA	4,723,321	G→C	8.8%	L97V (CTG→GTG)	htpG ←	chaperone protein HtpG
RA	4,723,322	G→C	8.9%	H96Q (CAC→CAG)	htpG ←	chaperone protein HtpG
RA	4,741,273:1	+C	60.9%	intergenic (+464/+288)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,274	A→C	39.1%	intergenic (+465/+287)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,275	A→G	61.4%	intergenic (+466/+286)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,276	C→G	34.5%	intergenic (+467/+285)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,277	C→T	65.3%	intergenic (+468/+284)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,279	C→T	30.1%	intergenic (+470/+282)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280	C→T	69.6%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,280:1	+T	26.1%	intergenic (+471/+281)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,283	C→G	100%	intergenic (+474/+278)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,285	2 bp→CT	100%	intergenic (+476/+275)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,298:1	+T	57.6%	intergenic (+489/+263)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,299	C→T	42.1%	intergenic (+490/+262)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,301	A→C	42.1%	intergenic (+492/+260)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,302	A→G	58.2%	intergenic (+493/+259)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,304	C→G	42.0%	intergenic (+495/+257)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,741,305	Δ1 bp	57.6%	intergenic (+496/+256)	gltA → / ← yeiW	citrate synthase/putative oxidoreductase
RA	4,744,784	G→A	5.8%	A29A (GCC→GCT)	PP_4198 ←	OmpA family protein
RA	4,744,788	C→G	5.8%	S28T (AGT→ACT)	PP_4198 ←	OmpA family protein
RA	4,744,792	T→C	6.7%	S27G (AGC→GGC)	PP_4198 ←	OmpA family protein
RA	4,758,175	C→T	8.0%	P468L (CCG→CTG)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,758,181	G→C	7.4%	R470P (CGC→CCC)	ompQ →	outer membrane pyoverdine efflux protein
RA	4,760,260	T→G	9.4%	F93V (TTC→GTC)	pvdM →	dipeptidase
RA	4,796,482	C→T	6.2%	P2P (CCG→CCA)	pvdH ←	diaminobutyrate‑2‑oxoglutarate transaminase
RA	4,796,657	C→T	8.5%	intergenic (‑170/+48)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,659	G→C	8.5%	intergenic (‑172/+46)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,662	G→C	7.9%	intergenic (‑175/+43)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,664	A→G	8.9%	intergenic (‑177/+41)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,796,672	C→T	11.3%	intergenic (‑185/+33)	pvdH ← / ← PP_4224	diaminobutyrate‑2‑oxoglutarate transaminase/sensor histidine kinase
RA	4,799,638	T→C	12.3%	V65A (GTA→GCA)	PP_5664 →	hypothetical protein
RA	4,818,324	A→G	8.9%	V4304A (GTC→GCC)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,295	G→A	5.4%	P2314S (CCG→TCG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,824,317	G→C	5.5%	S2306R (AGC→AGG)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,827,099	C→A	11.5%	S1379I (AGT→ATT) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,827,100	T→G	11.5%	S1379R (AGT→CGT) ‡	pvdL ←	non‑ribosomal peptide synthetase
RA	4,827,626	C→T	8.3%	V1203V (GTG→GTA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,830,110	C→T	6.9%	P375P (CCG→CCA)	pvdL ←	non‑ribosomal peptide synthetase
RA	4,832,099	A→T	7.1%	intergenic (+29/+123)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,102	T→A	7.0%	intergenic (+32/+120)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,105	A→T	6.9%	intergenic (+35/+117)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,113	C→G	7.3%	intergenic (+43/+109)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,832,116	T→G	6.8%	intergenic (+46/+106)	pvdS → / ← pvdY	alternative sigma factor/hydroxyproline acetylase
RA	4,842,941	Δ1 bp	19.2%	intergenic (+40/‑257)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,842,949:1	+G	22.8%	intergenic (+48/‑249)	ccoP‑II → / → PP_4259	cbb3‑type cytochrome c oxidase subunit/iron‑sulfur cluster‑binding protein
RA	4,848,651	A→T	8.0%	intergenic (+11/‑95)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,848,652	A→T	8.0%	intergenic (+12/‑94)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,848,653	A→T	8.2%	intergenic (+13/‑93)	PP_4263 → / → hemN	cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase
RA	4,870,087	G→A	6.7%	V598M (GTG→ATG)	xdhB →	xanthine dehydrogenase subunit XdhB
RA	4,899,298	T→G	7.6%	I72I (ATA→ATC)	PP_4307 ←	DMT superfamily permease
RA	4,900,110	A→G	12.7%	intergenic (+26/‑472)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,114	G→A	12.3%	intergenic (+30/‑468)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,115	T→C	12.5%	intergenic (+31/‑467)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,900,119	C→T	12.3%	intergenic (+35/‑463)	PP_4308 → / → PP_4309	AsnC family transcriptional regulator/NCS1 family transporter
RA	4,908,158	C→T	6.9%	intergenic (‑89/‑193)	PP_4317 ← / → PP_4318	hypothetical protein/transposase
RA	4,908,169	C→T	13.5%	intergenic (‑100/‑182)	PP_4317 ← / → PP_4318	hypothetical protein/transposase
RA	4,918,010	G→A	10.2%	V122I (GTC→ATC) ‡	PP_4328 →	hypothetical protein
RA	4,918,011	T→C	9.9%	V122A (GTC→GCC) ‡	PP_4328 →	hypothetical protein
RA	4,951,017	T→G	16.8%	intergenic (‑122/+35)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,951,018	C→A	15.8%	intergenic (‑123/+34)	fliL ← / ← fliK	flagellar protein FliL/flagellar hook‑length control protein FliK
RA	4,986,096	C→G	7.1%	P97R (CCG→CGG)	flgA →	flagella basal body P‑ring formation protein
RA	5,015,773	C→A	8.5%	A5S (GCT→TCT)	PP_5679 ←	hypothetical protein
RA	5,020,755	Δ1 bp	7.0%	coding (394/468 nt)	PP_4424 →	HTH‑type transcriptional regulator
RA	5,020,756	Δ1 bp	7.1%	coding (395/468 nt)	PP_4424 →	HTH‑type transcriptional regulator
RA	5,025,416	C→T	10.2%	P397L (CCA→CTA) ‡	PP_4429 →	GntR family transcriptional regulator
RA	5,025,417	A→G	10.0%	P397P (CCA→CCG) ‡	PP_4429 →	GntR family transcriptional regulator
RA	5,030,796	A→G	8.9%	intergenic (+34/‑461)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,030,799	C→T	10.7%	intergenic (+37/‑458)	PP_4433 → / → dadA‑I	amino acid MFS transporter/D‑amino acid dehydrogenase small subunit
RA	5,079,174	T→A	8.2%	intergenic (‑371/+26)	mgtE ← / ← PP_t56	magnesium transporter/tRNA‑Arg
RA	5,119,243	G→C	6.9%	L323L (CTG→CTC)	PP_4505 →	sensor histidine kinase
RA	5,119,244	G→C	6.9%	E324Q (GAG→CAG)	PP_4505 →	sensor histidine kinase
RA	5,135,931	G→C	6.7%	D229E (GAC→GAG)	PP_4521 ←	aerotaxis receptor
RA	5,135,936	G→C	6.6%	L228V (CTC→GTC)	PP_4521 ←	aerotaxis receptor
RA	5,162,654	Δ1 bp	12.8%	intergenic (+129/+72)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,162,657:1	+T	13.3%	intergenic (+132/+69)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,162,662	G→A	15.6%	intergenic (+137/+64)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,162,664	A→C	14.3%	intergenic (+139/+62)	PP_4544 → / ← PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
RA	5,182,113	T→G	10.8%	intergenic (‑123/+31)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,114	C→A	11.1%	intergenic (‑124/+30)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,120	A→C	8.3%	intergenic (‑130/+24)	PP_4560 ← / ← csbD	ribonuclease BN/stress response protein
RA	5,182,615	G→A	7.4%	P19P (CCG→CCA)	PP_4562 →	hypothetical protein
RA	5,182,971	G→C	6.3%	H271D (CAT→GAT)	PP_4563 ←	hypothetical protein
RA	5,182,972	G→C	6.2%	I270M (ATC→ATG)	PP_4563 ←	hypothetical protein
RA	5,183,040	A→T	5.4%	F248I (TTC→ATC)	PP_4563 ←	hypothetical protein
RA	5,183,045	T→A	5.4%	K246M (AAG→ATG) ‡	PP_4563 ←	hypothetical protein
RA	5,183,046	T→A	5.4%	K246* (AAG→TAG) ‡	PP_4563 ←	hypothetical protein
RA	5,183,051	A→T	5.9%	I244N (ATC→AAC)	PP_4563 ←	hypothetical protein
RA	5,194,935	T→G	12.5%	intergenic (+29/+24)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,194,936	C→A	12.5%	intergenic (+30/+23)	PP_4574 → / ← PP_4575	hypothetical protein/urea amidolyase‑like protein
RA	5,199,693	G→C	7.9%	intergenic (+20/+53)	PP_4579 → / ← PP_4580	LysR family transcriptional regulator/hypothetical protein
RA	5,200,596	T→G	7.0%	Q152P (CAG→CCG)	yafJ ←	amidotransferase
RA	5,229,239	Δ1 bp	8.3%	intergenic (‑133/+43)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,229,243	C→G	8.7%	intergenic (‑137/+39)	PP_4606 ← / ← PP_4607	ferric siderophore receptor/transmembrane sensor
RA	5,239,932	G→A	12.5%	A144V (GCG→GTG)	ldh ←	leucine dehydrogenase
RA	5,239,937	T→C	12.3%	P142P (CCA→CCG)	ldh ←	leucine dehydrogenase
RA	5,257,752	G→T	8.0%	P33H (CCC→CAC)	PP_4634 ←	alpha/beta family hydrolase
RA	5,257,997	A→G	9.3%	L403P (CTG→CCG)	PP_4635 ←	trans‑2‑enoyl‑CoA reductase
RA	5,286,145	C→G	6.7%	M403I (ATG→ATC)	ggt ←	gamma‑glutamyltranspeptidase
RA	5,313,307	A→G	7.8%	intergenic (‑578/+136)	PP_16SG ← / ← msrQ	16S ribosomal RNA/methionine sulfoxide reductase heme‑binding subunit
RA	5,325,559	T→A	16.1%	noncoding (133/149 nt)	PP_mr52 →	PrrF ncRNA
RA	5,331,103	G→A	6.7%	A169V (GCC→GTC)	PP_4692 ←	aspartate/tyrosine/aromatic aminotransferase
RA	5,331,109	A→T	6.5%	V167D (GTC→GAC)	PP_4692 ←	aspartate/tyrosine/aromatic aminotransferase
RA	5,338,098	C→G	7.4%	intergenic (+57/‑227)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,338,101	C→G	7.5%	intergenic (+60/‑224)	PP_4696 → / → PP_mr53	nitrogen regulation protein NR(I)/CrcZ ncRNA
RA	5,344,515	C→G	13.7%	intergenic (+42/‑136)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,519	C→T	13.9%	intergenic (+46/‑132)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,528	A→G	12.5%	intergenic (+55/‑123)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,532	C→G	12.5%	intergenic (+59/‑119)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,537	Δ1 bp	10.0%	intergenic (+64/‑114)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,344,538	Δ1 bp	9.6%	intergenic (+65/‑113)	pgi‑II → / → acsA‑II	glucose 6‑phosphate isomerase/acetyl‑CoA synthetase
RA	5,352,025	G→T	9.7%	intergenic (‑230/+34)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,352,028	A→C	8.2%	intergenic (‑233/+31)	PP_4707 ← / ← pnp	OsmY‑like protein/polyribonucleotide nucleotidyltransferase
RA	5,361,119	A→T	10.3%	intergenic (‑78/+23)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,361,120	A→T	10.4%	intergenic (‑79/+22)	PP_t49 ← / ← PP_t48	tRNA‑Met/tRNA‑Leu
RA	5,368,718	G→T	15.2%	R14S (CGC→AGC)	greA ←	transcription elongation factor GreA
RA	5,368,719	A→C	15.1%	A13A (GCT→GCG)	greA ←	transcription elongation factor GreA
RA	5,385,274:1	+G	8.8%	intergenic (+19/‑44)	lldP → / → lldD	L‑lactate permease/L‑lactate dehydrogenase
RA	5,385,277	T→A	8.4%	intergenic (+22/‑41)	lldP → / → lldD	L‑lactate permease/L‑lactate dehydrogenase
RA	5,385,280	Δ1 bp	8.8%	intergenic (+25/‑38)	lldP → / → lldD	L‑lactate permease/L‑lactate dehydrogenase
RA	5,390,479	T→G	9.3%	intergenic (+520/‑202)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,390,480	C→A	9.2%	intergenic (+521/‑201)	PP_4738 → / → PP_mr56	hypothetical protein/C4 ncRNA
RA	5,406,666	T→C	8.5%	R267G (AGG→GGG)	PP_4751 ←	amino acid ABC transporter ATP‑binding protein
RA	5,430,440	A→G	6.4%	intergenic (‑74/+87)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,444	A→G	7.7%	intergenic (‑78/+83)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,445:1	+A	6.7%	intergenic (‑79/+82)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,452	Δ1 bp	6.3%	intergenic (‑86/+75)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,454	C→T	6.8%	intergenic (‑88/+73)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,430,458	C→T	8.1%	intergenic (‑92/+69)	PP_4769 ← / ← PP_4770	hypothetical protein/hypothetical protein
RA	5,440,059	T→C	7.7%	D272G (GAC→GGC)	amn ←	AMP nucleosidase
RA	5,440,062	G→A	7.8%	A271V (GCC→GTC)	amn ←	AMP nucleosidase
RA	5,443,257	A→C	5.4%	L524R (CTG→CGG)	PP_4781 ←	sensor histidine kinase
RA	5,443,262	G→T	5.5%	A522A (GCC→GCA)	PP_4781 ←	sensor histidine kinase
RA	5,472,204	T→A	9.8%	K95M (AAG→ATG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,472,205	T→A	9.8%	K95* (AAG→TAG) ‡	rlmH ←	23S rRNA (pseudouridine(1915)‑N(3))‑methyltransferase RlmH
RA	5,485,198	A→G	7.3%	intergenic (+56/‑91)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,201	A→G	8.9%	intergenic (+59/‑88)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,202	T→C	9.4%	intergenic (+60/‑87)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,207	G→A	9.3%	intergenic (+65/‑82)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,210	T→C	9.9%	intergenic (+68/‑79)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,215	G→A	9.8%	intergenic (+73/‑74)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,216	C→T	9.8%	intergenic (+74/‑73)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,485,219	C→T	9.3%	intergenic (+77/‑70)	purH → / → purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
RA	5,491,538	G→A	5.6%	intergenic (‑26/+26)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,491,540	C→G	5.6%	intergenic (‑28/+24)	PP_5715 ← / ← PP_5716	hypothetical protein/hypothetical protein
RA	5,503,188	C→T	6.4%	A30A (GCC→GCT)	oprC →	copper receptor OprC
RA	5,549,653	T→A	8.4%	intergenic (+18/‑154)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,549,654	T→A	8.3%	intergenic (+19/‑153)	PP_t47 → / → PP_4881	tRNA‑Leu/iron ABC transporter substrate‑binding protein
RA	5,559,667	T→A	6.6%	Q294L (CAG→CTG)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,559,673	A→G	7.0%	I292T (ATC→ACC)	hisZ ←	ATP phosphoribosyltransferase regulatory subunit
RA	5,560,582	A→T	6.0%	intergenic (‑35/+267)	hisZ ← / ← hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
RA	5,560,585	A→T	5.9%	intergenic (‑38/+264)	hisZ ← / ← hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
RA	5,567,229	A→T	8.8%	L103* (TTG→TAG) ‡	mutL ←	DNA mismatch repair protein MutL
RA	5,567,230	A→T	9.1%	L103M (TTG→ATG) ‡	mutL ←	DNA mismatch repair protein MutL
RA	5,577,872	C→T	8.4%	intergenic (+7/‑38)	PP_4906 → / → rhdA	hypothetical protein/thiosulfate sulfurtransferase
RA	5,579,592	A→G	7.1%	*288W (TGA→TGG)	psd →	phosphatidylserine decarboxylase
RA	5,587,812	G→T	7.1%	Q463K (CAG→AAG)	parE ←	DNA topoisomerase IV subunit B
RA	5,599,945	C→G	8.9%	P1196P (CCG→CCC)	PP_4924 ←	subtilase family serine protease
RA	5,651,425	T→G	7.6%	intergenic (‑182/+31)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,651,428	C→A	6.9%	intergenic (‑185/+28)	PP_4959 ← / ← fba	diguanylate cyclase/fructose‑bisphosphate aldolase
RA	5,655,677:1	+A	12.8%	intergenic (‑81/+71)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,682	T→G	17.7%	intergenic (‑86/+66)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,687	C→A	15.6%	intergenic (‑91/+61)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,655,692	Δ1 bp	15.4%	intergenic (‑96/+56)	epd ← / ← tktA	D‑erythrose 4‑phosphate dehydrogenase/transketolase A
RA	5,660,233	G→T	12.2%	intergenic (+35/‑194)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,660,236	A→C	12.3%	intergenic (+38/‑191)	metK → / → ligB	methionine adenosyltransferase/DNA ligase B
RA	5,667,309	G→T	6.8%	intergenic (+36/+35)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,667,310	A→C	7.0%	intergenic (+37/+34)	nhaP → / ← PP_4975	NhaP‑type Na+(K+)/H+ antiporter/acyl‑CoA thioesterase
RA	5,673,161	G→A	6.5%	G118D (GGC→GAC)	rhlE‑II →	ATP‑dependent RNA helicase
RA	5,687,448	A→G	7.1%	I525T (ATC→ACC)	pilJ ←	twitching motility protein PilJ
RA	5,698,803	T→C	7.1%	intergenic (+37/‑130)	hslU → / → PP_5002	protease HslVU ATPase subunit/hypothetical protein
RA	5,740,523	T→G	13.0%	intergenic (+32/+39)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,526	A→T	12.2%	intergenic (+35/+36)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,527	A→T	11.7%	intergenic (+36/+35)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,530	C→A	12.0%	intergenic (+39/+32)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,740,540	T→C	15.4%	intergenic (+49/+22)	hutF → / ← PP_5037	formiminoglutamate deiminase/lipocalin family lipoprotein
RA	5,741,564	A→T	6.0%	intergenic (‑179/+49)	PP_5038 ← / ← PP_5039	lipoprotein/hypothetical protein
RA	5,746,541	G→C	9.8%	intergenic (+32/+67)	PP_5042 → / ← PP_5043	hypothetical protein/PhoPQ‑activated pathogenicity‑like protein
RA	5,753,541	T→G	16.4%	intergenic (+46/‑320)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,753,542	C→A	16.5%	intergenic (+47/‑319)	glnA → / → glnL	glutamine synthetase/two‑component system sensor histidine kinase/phosphatase GlnL/GlnG
RA	5,777,456:1	+T	8.9%	intergenic (+19/+24)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,777,459	Δ1 bp	8.9%	intergenic (+22/+21)	betA‑II → / ← PP_5065	choline dehydrogenase/hypothetical protein
RA	5,790,189	G→T	8.2%	intergenic (+12/+56)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,193	G→A	7.8%	intergenic (+16/+52)	ynfM → / ← PP_5073	efflux transporter/hypothetical protein
RA	5,790,676	A→T	12.9%	intergenic (‑24/+33)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,790,681	A→T	13.1%	intergenic (‑29/+28)	PP_5073 ← / ← hemE	hypothetical protein/uroporphyrinogen decarboxylase
RA	5,790,940	G→C	8.4%	A278A (GCC→GCG)	hemE ←	uroporphyrinogen decarboxylase
RA	5,806,652	C→T	6.4%	A395A (GCC→GCT)	mrcA →	penicillin‑insensitive transglycosylase/penicillin‑sensitive transpeptidase
RA	5,827,811	G→C	6.1%	G223A (GGG→GCG)	mtgA →	monofunctional biosynthetic peptidoglycan transglycosylase
RA	5,835,320	C→T	5.9%	Q18* (CAG→TAG)	PP_5114 →	adenine methyltransferase
RA	5,844,171	C→T	8.3%	A246V (GCC→GTC)	PP_5122 →	GMC family oxidoreductase
RA	5,845,651:1	+A	11.7%	intergenic (+20/‑82)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,845,658	Δ1 bp	11.9%	intergenic (+27/‑75)	coaD → / → yfhL	phosphopantetheine adenylyltransferase/4Fe‑4S cluster‑containing protein
RA	5,846,014	A→G	8.8%	intergenic (+30/+61)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,019	G→A	8.5%	intergenic (+35/+56)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,028	T→C	11.2%	intergenic (+44/+47)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,033	C→T	7.9%	intergenic (+49/+42)	yfhL → / ← mutM	4Fe‑4S cluster‑containing protein/formamidopyrimidine‑DNA glycosylase
RA	5,846,239	T→C	8.6%	T217A (ACC→GCC)	mutM ←	formamidopyrimidine‑DNA glycosylase
RA	5,846,246	G→A	10.2%	G214G (GGC→GGT)	mutM ←	formamidopyrimidine‑DNA glycosylase
RA	5,855,446	T→A	8.3%	intergenic (+18/+114)	tcyP → / ← folA	sodium/cystine symporter/dihydrofolate reductase
RA	5,866,752	G→T	12.7%	intergenic (+19/+38)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,866,753	A→C	13.0%	intergenic (+20/+37)	PP_5140 → / ← thyA	MerR family transcriptional regulator/thymidylate synthase
RA	5,903,220	G→T	12.2%	intergenic (‑128/‑140)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,903,221	A→C	12.5%	intergenic (‑129/‑139)	PP_5175 ← / → PP_5176	HlyD family secretion protein/hypothetical protein
RA	5,925,452	A→G	6.6%	L250P (CTG→CCG)	gcvT‑II ←	aminomethyltransferase
RA	5,928,795	C→T	6.6%	D104N (GAC→AAC)	fbpA ←	iron ABC transporter substrate‑binding protein
RA	5,929,836	G→A	8.1%	T203M (ACG→ATG) ‡	visC ←	ubiquinone biosynthesis oxidoreductase
RA	5,929,837	T→C	8.1%	T203A (ACG→GCG) ‡	visC ←	ubiquinone biosynthesis oxidoreductase
RA	5,938,718	T→A	6.2%	L408Q (CTG→CAG)	rbbA →	ribosome‑associated ATPase
RA	5,938,720	T→G	6.3%	S409A (TCG→GCG)	rbbA →	ribosome‑associated ATPase
RA	5,951,015	T→G	6.6%	E666D (GAA→GAC)	ppk ←	polyphosphate kinase
RA	5,951,024	G→A	7.1%	F663F (TTC→TTT)	ppk ←	polyphosphate kinase
RA	5,951,645	T→C	8.6%	Q456Q (CAA→CAG)	ppk ←	polyphosphate kinase
RA	5,951,650	G→A	8.8%	L455L (CTG→TTG)	ppk ←	polyphosphate kinase
RA	5,963,902	T→G	8.2%	Y216D (TAT→GAT)	PP_5229 →	hypothetical protein
RA	5,963,907	C→A	8.2%	I217I (ATC→ATA)	PP_5229 →	hypothetical protein
RA	5,988,865	G→A	24.6%	intergenic (+103/‑443)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,875	T→C	25.8%	intergenic (+113/‑433)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,880	C→T	24.3%	intergenic (+118/‑428)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,881	G→T	24.3%	intergenic (+119/‑427)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,882	C→T	25.2%	intergenic (+120/‑426)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,885	A→G	24.1%	intergenic (+123/‑423)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,891	G→C	24.7%	intergenic (+129/‑417)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,893	C→G	25.1%	intergenic (+131/‑415)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,896	C→T	26.7%	intergenic (+134/‑412)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,900	C→G	29.6%	intergenic (+138/‑408)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,904	C→T	29.7%	intergenic (+142/‑404)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,906	C→T	30.8%	intergenic (+144/‑402)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,945	C→A	34.1%	intergenic (+183/‑363)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,950	C→T	38.5%	intergenic (+188/‑358)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,951	A→G	38.8%	intergenic (+189/‑357)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,961	T→C	36.8%	intergenic (+199/‑347)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,988,967	Δ1 bp	36.6%	intergenic (+205/‑341)	kefB‑III → / → PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
RA	5,997,245:1	+G	13.8%	intergenic (‑158/+42)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	5,997,250	Δ1 bp	13.8%	intergenic (‑163/+37)	PP_5252 ← / ← PP_5253	hypothetical protein/arylesterase
RA	6,005,029	G→C	6.4%	intergenic (+11/‑165)	PP_5259 → / → ydcJ	LysR family transcriptional regulator/metalloprotein
RA	6,009,206	G→A	18.6%	intergenic (+47/+35)	norM → / ← PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
RA	6,032,849	G→C	6.8%	intergenic (+57/+79)	dppA‑IV → / ← PP_5284	dipeptide transport protein/hypothetical protein
RA	6,040,850	T→A	10.7%	intergenic (+19/+15)	PP_5292 → / ← PP_5293	catabolite repression control protein/hypothetical protein
RA	6,041,601	G→C	5.6%	R127G (CGT→GGT)	rph ←	ribonuclease PH
RA	6,041,602	G→C	5.6%	T126T (ACC→ACG)	rph ←	ribonuclease PH
RA	6,043,722	T→A	6.3%	intergenic (+18/+16)	gmk → / ← PP_5297	deoxyguanylate kinase/guanylate kinase/amino acid transporter
RA	6,048,161	G→A	5.6%	A194T (GCC→ACC)	PP_5300 →	LysR family transcriptional regulator
RA	6,054,288	C→T	6.5%	S192S (AGC→AGT)	exbB →	biopolymer transport protein ExbB
RA	6,061,548	Δ1 bp	8.0%	intergenic (‑125/+63)	hupA ← / ← alkT	DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase
RA	6,061,559:1	+C	7.7%	intergenic (‑136/+52)	hupA ← / ← alkT	DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase
RA	6,070,833	A→T	17.8%	intergenic (‑133/+30)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,070,834	A→T	17.8%	intergenic (‑134/+29)	PP_5324 ← / ← phoU	two‑component system response regulator/phosphate transport‑associated protein
RA	6,076,151	T→A	5.2%	N156I (AAT→ATT)	PP_5328 ←	phosphate ABC transporter permease
RA	6,076,155	A→C	6.1%	S155A (TCC→GCC)	PP_5328 ←	phosphate ABC transporter permease
RA	6,081,044	T→A	11.1%	intergenic (+35/+27)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
RA	6,081,045	T→A	11.1%	intergenic (+36/+26)	PP_5332 → / ← PP_5333	hypothetical protein/hypothetical protein
JC	6,098,315	Δ9 bp	26.8%	coding (822‑830/867 nt)	PP_5350 ←	RpiR family transcriptional regulator
JC	6,098,935	Δ6 bp	66.7%	coding (205‑210/867 nt)	PP_5350 ←	RpiR family transcriptional regulator
RA	6,104,109	T→A	10.9%	intergenic (+31/‑83)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,104,110	T→A	10.5%	intergenic (+32/‑82)	PP_5353 → / → PP_5354	hypothetical protein/hypothetical protein
RA	6,128,641	A→G	8.5%	intergenic (‑701/‑221)	PP_5375 ← / → PP_5376	LysR family transcriptional regulator/hypothetical protein
RA	6,129,226	C→T	8.0%	intergenic (+32/+35)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,229	A→T	7.8%	intergenic (+35/+32)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,129,232	A→G	7.8%	intergenic (+38/+29)	PP_5376 → / ← PP_5377	hypothetical protein/hypothetical protein
RA	6,146,618	C→A	5.5%	P263P (CCG→CCT)	PP_5392 ←	WD40/YVTN repeat‑containing protein
RA	6,161,940	T→C	6.5%	F98L (TTT→CTT)	PP_5403 →	hypothetical protein

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	4808205	4808218	14	48 [0]	[0] 49	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

Unassigned new junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 41794	27 (0.550)	5 (0.110)	3/224	NT	16.3%	intergenic (+36/‑263)	oprP/PP_0039	porin P/hypothetical protein
	?	NC_002947	= 41803	27 (0.610)					intergenic (+45/‑254)	oprP/PP_0039	porin P/hypothetical protein
*	?	NC_002947	80983 =	39 (0.800)	6 (0.130)	5/230	NT	14.0%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	38 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
*	?	NC_002947	= 86765	31 (0.630)	7 (0.160)	6/218	NT	17.5%	intergenic (‑48/+97)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
	?	NC_002947	= 86824	39 (0.910)					intergenic (‑107/+38)	PP_0075/PP_0076	choline sulfate transporter/choline betaine‑binding protein
*	?	NC_002947	100443 =	68 (1.390)	5 (0.120)	5/216	NT	8.0%	intergenic (‑35/+87)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
	?	NC_002947	100525 =	57 (1.350)					intergenic (‑117/+5)	PP_0094/PP_0095	5'‑nucleotidase/hypothetical protein
*	?	NC_002947	171284 =	NA (NA)	3 (0.060)	3/238	NT	NA	intergenic (+465/‑105)	PP_0159/PP_16SA	family III CoA‑transferase/16S ribosomal RNA
	?	NC_002947	171337 =	NA (NA)					intergenic (+518/‑52)	PP_0159/PP_16SA	family III CoA‑transferase/16S ribosomal RNA
*	?	NC_002947	= 176399	NA (NA)	28 (0.590) +CGAAA	19/240	NT	30.0%	intergenic (+43/‑420)	PP_5SA/PP_16SB	5S ribosomal RNA/16S ribosomal RNA
	?	NC_002947	= 182013	68 (1.390)					intergenic (+2/+63)	PP_5SB/PP_0160	5S ribosomal RNA/ferrioxamine receptor
*	?	NC_002947	219916 =	55 (1.120)	3 (0.060)	3/242	NT	5.1%	coding (25422/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	219947 =	58 (1.220)					coding (25453/26049 nt)	PP_0168	putative surface adhesion protein
*	?	NC_002947	235331 =	65 (1.330)	11 (0.260)	6/218	NT	17.1%	intergenic (+28/+97)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	235390 =	50 (1.170)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
*	?	NC_002947	254680 =	67 (1.370)	7 (0.150)	7/238	NT	10.2%	coding (437/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254712 =	59 (1.260)					coding (405/1731 nt)	PP_0203	dipeptidase
*	?	NC_002947	258497 =	51 (1.040)	5 (0.110)	5/232	NT	10.2%	coding (31/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	258529 =	41 (0.900)					coding (63/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
*	?	NC_002947	278734 =	44 (0.900)	3 (0.080)	3/202	NT	9.9%	intergenic (‑229/+86)	PP_0224/sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
	?	NC_002947	278805 =	19 (0.480)					intergenic (‑300/+15)	PP_0224/sctC	DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein
*	?	NC_002947	= 280199	31 (0.630)	7 (0.160)	7/228	NT	18.4%	coding (51/669 nt)	sctS	sulfur compound ABC transporter permease
	?	NC_002947	= 280204	34 (0.760)					coding (46/669 nt)	sctS	sulfur compound ABC transporter permease
*	?	NC_002947	283827 =	43 (0.880)	4 (0.080)	3/244	NT	8.6%	coding (1277/2004 nt)	betT‑II	choline/carnitine/betaine transporter
	?	NC_002947	283875 =	43 (0.900)					coding (1325/2004 nt)	betT‑II	choline/carnitine/betaine transporter
*	?	NC_002947	317824 =	54 (1.100)	6 (0.130)	6/232	NT	10.6%	coding (109/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
	?	NC_002947	317860 =	51 (1.120)					coding (73/1407 nt)	dctD‑I	C4‑dicarboxylate transport transcriptional regulator
*	?	NC_002947	337784 =	23 (0.470)	12 (0.320)	12/194	NT	48.1%	intergenic (‑31/+98)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease
	?	NC_002947	337868 =	8 (0.210)					intergenic (‑115/+14)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease
*	?	NC_002947	353104 =	52 (1.060)	3 (0.080)	3/198	NT	9.5%	intergenic (+68/+50)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	6009197 =	16 (0.410)					intergenic (+38/+44)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
*	?	NC_002947	360248 =	52 (1.060)	4 (0.090)	4/238	NT	7.2%	intergenic (‑27/‑105)	PP_0299/PP_0300	hypothetical protein/metallopeptidase
	?	NC_002947	360274 =	53 (1.140)					intergenic (‑53/‑79)	PP_0299/PP_0300	hypothetical protein/metallopeptidase
*	?	NC_002947	= 363597	68 (1.390)	6 (0.130) +GCGGGCAC	6/234	NT	9.7%	intergenic (‑112/+55)	lcdH/PP_0303	L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme
	?	NC_002947	2237037 =	51 (1.040)					intergenic (+89/+39)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
*	?	NC_002947	375301 =	53 (1.080)	7 (0.150)	7/246	NT	11.4%	coding (588/1233 nt)	PP_0312	electron transfer flavoprotein subunit alpha
	?	NC_002947	375332 =	57 (1.180)					coding (619/1233 nt)	PP_0312	electron transfer flavoprotein subunit alpha
*	?	NC_002947	380836 =	25 (0.510)	4 (0.100)	4/204	NT	14.4%	intergenic (+23/+86)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	380916 =	27 (0.670)					intergenic (+103/+6)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 380858	27 (0.550)	5 (0.120)	5/204	NT	16.9%	intergenic (+45/+64)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
	?	NC_002947	= 380892	27 (0.670)					intergenic (+79/+30)	gbcB/PP_0317	glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 401316	NA (NA)	9 (0.200)	8/224	NT	21.8%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401372	36 (0.730)					coding (955/1059 nt)	PP_0334	transposase
*	?	NC_002947	401317 =	18 (0.370)	9 (0.200)	5/224	NT	24.3%	coding (900/1059 nt)	PP_0334	transposase
	?	NC_002947	3968992 =	40 (0.910)					coding (1076/1179 nt)	PP_3498	transposase
*	?	NC_002947	= 403253	70 (1.430)	8 (0.190) +CGCCCGCTCCCACAGGAA	6/214	NT	16.0%	intergenic (‑53/+116)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	5162647 =	28 (0.570)					intergenic (+122/+79)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	404178 =	67 (1.370)	3 (0.070)	5/228	NT	5.2%	coding (1882/2691 nt)	PP_0337	sensory box protein
	?	NC_002947	404207 =	48 (1.070)					coding (1853/2691 nt)	PP_0337	sensory box protein
*	?	NC_002947	413997 =	80 (1.630)	11 (0.290)	10/194	NT	18.6%	intergenic (+14/‑189)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
	?	NC_002947	414083 =	34 (0.890)					intergenic (+100/‑103)	glnE/waaF	glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II
*	?	NC_002947	= 461367	45 (0.920)	3 (0.070)	3/234	NT	6.4%	coding (1101/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 461389	46 (1.000)					coding (1079/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
*	?	NC_002947	= 511921	64 (1.300)	6 (0.140)	6/220	NT	9.2%	intergenic (+58/‑90)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
	?	NC_002947	= 511969	62 (1.440)					intergenic (+106/‑42)	trpC/PP_0423	indole‑3‑glycerol phosphate synthase/hypothetical protein
*	?	NC_002947	529914 =	40 (0.820)	6 (0.130)	6/228	NT	12.2%	intergenic (+8/‑176)	PP_5SC/birA	5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
	?	NC_002947	703050 =	50 (1.120)					intergenic (+44/‑215)	PP_5SD/PP_0598	5S ribosomal RNA/paraquat‑inducible protein A
*	?	NC_002947	= 556297	40 (0.820)	5 (0.110)	5/230	NT	11.1%	coding (231/315 nt)	rplX	50S ribosomal protein L24
	?	NC_002947	= 556309	43 (0.950)					coding (243/315 nt)	rplX	50S ribosomal protein L24
*	?	NC_002947	= 567337	57 (1.160)	5 (0.110)	4/236	NT	7.8%	coding (2162/2835 nt)	uvrA	uvrABC excinuclease protein A
	?	NC_002947	= 567361	64 (1.380)					coding (2138/2835 nt)	uvrA	uvrABC excinuclease protein A
*	?	NC_002947	579595 =	58 (1.180)	4 (0.090)	4/238	NT	7.2%	coding (614/657 nt)	fdoI	formate dehydrogenase‑O subunit gamma
	?	NC_002947	579613 =	48 (1.030)					coding (632/657 nt) coding (1/957 nt)	fdoI fdhE	formate dehydrogenase‑O subunit gamma formate dehydrogenase formation protein
*	?	NC_002947	611507 =	NA (NA)	8 (0.170)	8/236	NT	NA	coding (401/966 nt)	PP_0526	transposase
	?	NC_002947	611536 =	NA (NA)					coding (430/966 nt)	PP_0526	transposase
*	?	NC_002947	= 625064	27 (0.550)	3 (0.070)	5/232	NT	10.2%	intergenic (‑155/+28)	PP_0537/ppa	transcriptional regulator/inorganic pyrophosphatase
	?	NC_002947	= 625068	28 (0.620)					intergenic (‑159/+24)	PP_0537/ppa	transcriptional regulator/inorganic pyrophosphatase
*	?	NC_002947	= 652785	47 (0.960)	31 (0.750)	23/210	NT	61.1%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808204	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
*	?	NC_002947	653522 =	56 (1.140)	3 (0.060)	3/238	NT	5.6%	coding (1224/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	653570 =	48 (1.030)					coding (1176/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
*	?	NC_002947	= 724736	50 (1.020)	4 (0.090)	3/238	NT	7.3%	coding (1166/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
	?	NC_002947	= 724774	54 (1.160)					coding (1128/1203 nt)	PP_0619	branched‑chain amino acid ABC transporter substrate‑binding protein
*	?	NC_002947	= 775002	38 (0.770)	4 (0.090)	4/232	NT	10.6%	coding (171/363 nt)	PP_0666	hypothetical protein
	?	NC_002947	= 775029	32 (0.700)					coding (198/363 nt)	PP_0666	hypothetical protein
*	?	NC_002947	= 786605	61 (1.240)	5 (0.110)	5/228	NT	8.0%	intergenic (+24/‑281)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 786691	59 (1.320)					intergenic (+110/‑195)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
*	?	NC_002947	796828 =	46 (0.940)	9 (0.210)	8/218	NT	20.2%	intergenic (+27/‑163)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
	?	NC_002947	796898 =	31 (0.720)					intergenic (+97/‑93)	PP_0681/PP_0682	hypothetical protein/inner membrane protein
*	?	NC_002947	= 800155	46 (0.940)	4 (0.080)	4/240	NT	8.4%	coding (321/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	= 800185	43 (0.910)					coding (291/969 nt)	ispB	octaprenyl diphosphate synthase
*	?	NC_002947	= 813876	59 (1.200)	3 (0.060)	3/240	NT	5.1%	coding (510/987 nt)	PP_0700	transmembrane sensor
	?	NC_002947	= 813902	55 (1.170)					coding (484/987 nt)	PP_0700	transmembrane sensor
*	?	NC_002947	867938 =	80 (1.630)	7 (0.160)	7/220	NT	9.5%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867998 =	63 (1.460)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
*	?	NC_002947	= 901777	36 (0.730)	5 (0.110)	5/238	NT	11.6%	coding (163/963 nt)	trxB	thioredoxin reductase
	?	NC_002947	= 901795	42 (0.900)					coding (181/963 nt)	trxB	thioredoxin reductase
*	?	NC_002947	922749 =	48 (0.980)	3 (0.060)	4/248	NT	6.3%	coding (282/1185 nt)	PP_0803	protein secretion ABC transporter permease
	?	NC_002947	922788 =	42 (0.860)					coding (243/1185 nt)	PP_0803	protein secretion ABC transporter permease
*	?	NC_002947	= 942551	NA (NA)	3 (0.070)	3/234	NT	9.1%	coding (3074/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	= 942587	32 (0.650)					coding (3038/18933 nt)	PP_0806	surface adhesion protein
*	?	NC_002947	975174 =	65 (1.330)	4 (0.100)	4/210	NT	8.2%	intergenic (+20/+149)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
	?	NC_002947	975246 =	35 (0.850)					intergenic (+92/+77)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
*	?	NC_002947	= 1000644	48 (0.980)	7 (0.150)	7/238	NT	13.4%	coding (302/681 nt)	PP_0862	PKHD‑type hydroxylase
	?	NC_002947	= 1000655	45 (0.960)					coding (313/681 nt)	PP_0862	PKHD‑type hydroxylase
*	?	NC_002947	= 1025296	47 (0.960)	5 (0.130)	5/196	NT	10.7%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025335	47 (1.220)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
*	?	NC_002947	1036524 =	57 (1.160)	3 (0.070)	3/232	NT	5.6%	coding (226/591 nt)	PP_0895	hypothetical protein
	?	NC_002947	1036569 =	49 (1.080)					coding (271/591 nt)	PP_0895	hypothetical protein
*	?	NC_002947	1037761 =	57 (1.160)	5 (0.110)	5/242	NT	7.7%	intergenic (+3/+113)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
	?	NC_002947	1037865 =	64 (1.350)					intergenic (+107/+9)	PP_0896/PP_0897	carbon‑nitrogen hydrolase family protein/class 1 fumarate hydratase
*	?	NC_002947	1041849 =	63 (1.280)	3 (0.060)	3/238	NT	5.0%	coding (329/684 nt)	colR	two‑component system response regulator
	?	NC_002947	1041877 =	54 (1.160)					coding (357/684 nt)	colR	two‑component system response regulator
*	?	NC_002947	= 1096700	52 (1.060)	4 (0.080)	4/240	NT	7.3%	coding (267/726 nt)	lptB	ABC transporter ATP‑binding protein
	?	NC_002947	= 1096707	51 (1.080)					coding (260/726 nt)	lptB	ABC transporter ATP‑binding protein
*	?	NC_002947	= 1114899	30 (0.610)	5 (0.130)	4/200	NT	14.3%	intergenic (‑88/+91)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	= 1114925	36 (0.920)					intergenic (‑114/+65)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
*	?	NC_002947	1126598 =	57 (1.160)	7 (0.170)	5/208	NT	13.4%	intergenic (‑47/+103)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126656 =	43 (1.050)					intergenic (‑105/+45)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
*	?	NC_002947	1147959 =	53 (1.080)	5 (0.110)	6/236	NT	9.5%	coding (110/2589 nt)	PP_1006	heme receptor
	?	NC_002947	1147991 =	45 (0.970)					coding (78/2589 nt)	PP_1006	heme receptor
*	?	NC_002947	= 1163624	44 (0.900)	7 (0.150)	7/244	NT	13.0%	intergenic (+42/‑76)	oprB‑I/yeaD	carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase
	?	NC_002947	= 1163651	51 (1.070)					intergenic (+69/‑49)	oprB‑I/yeaD	carbohydrate‑selective porin/glucose‑6‑phosphate 1‑epimerase
*	?	NC_002947	= 1188977	39 (0.800)	4 (0.080)	4/242	NT	8.8%	coding (273/312 nt)	PP_1038	hypothetical protein
	?	NC_002947	= 1189001	45 (0.950)					coding (297/312 nt)	PP_1038	hypothetical protein
*	?	NC_002947	= 1208319	48 (0.980)	5 (0.110)	5/238	NT	8.9%	coding (688/3150 nt)	PP_1058	hypothetical protein
	?	NC_002947	= 1208337	57 (1.220)					coding (670/3150 nt)	PP_1058	hypothetical protein
*	?	NC_002947	1212590 =	69 (1.410)	4 (0.090)	4/230	NT	6.9%	intergenic (‑118/+70)	PP_1060/PP_1061	glutamate synthase large subunit/ATP‑dependent DNA helicase
	?	NC_002947	1212688 =	44 (0.980)					coding (4277/4305 nt)	PP_1061	ATP‑dependent DNA helicase
*	?	NC_002947	1266235 =	69 (1.410)	4 (0.090)	4/236	NT	5.7%	coding (1759/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1266275 =	68 (1.470)					coding (1719/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
*	?	NC_002947	= 1273270	38 (0.770)	6 (0.140)	6/220	NT	14.4%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273329	38 (0.880)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
*	?	NC_002947	1311774 =	45 (0.920)	3 (0.070) +GCATCCACT	3/232	NT	7.5%	intergenic (‑236/+42)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	3963035 =	35 (0.710)					intergenic (+37/+80)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator
*	?	NC_002947	= 1311782	46 (0.940)	4 (0.090)	3/232	NT	7.6%	intergenic (‑244/+34)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	5594217 =	54 (1.190)					intergenic (‑113/+32)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
*	?	NC_002947	1362970 =	78 (1.590)	5 (0.110)	5/232	NT	7.5%	intergenic (+7/‑344)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein
	?	NC_002947	1363020 =	51 (1.120)					intergenic (+57/‑294)	phoQ/dctA‑I	sensor protein/C4‑dicarboxylate transport protein
*	?	NC_002947	1366636 =	51 (1.040)	4 (0.090)	4/236	NT	7.8%	coding (70/711 nt)	PP_1191	S4 domain‑containing protein
	?	NC_002947	1366665 =	46 (0.990)					coding (41/711 nt)	PP_1191	S4 domain‑containing protein
*	?	NC_002947	1380493 =	43 (0.880)	3 (0.070)	3/226	NT	8.0%	intergenic (‑213/+49)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
	?	NC_002947	1380532 =	30 (0.680)					intergenic (‑252/+10)	PP_1202/PP_t67	phospholipids modification protein/tRNA‑Met
*	?	NC_002947	1419553 =	16 (0.330)	3 (0.080)	3/186	NT	21.5%	intergenic (‑36/+101)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419647 =	10 (0.270)					intergenic (‑130/+7)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1419584	13 (0.270)	6 (0.160)	5/186	NT	37.9%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	10 (0.270)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
*	?	NC_002947	= 1426821	NA (NA)	4 (0.080)	4/240	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase
*	?	NC_002947	1443111 =	48 (0.980)	17 (0.430)	14/200	NT	36.4%	intergenic (‑42/+134)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
	?	NC_002947	1443179 =	21 (0.540)					intergenic (‑110/+66)	ghrB/PP_1262	2‑ketoaldonate reductase/hydroxypyruvate/glyoxylate reductase/LysR family transcriptional regulator
*	?	NC_002947	= 1444636	50 (1.020)	4 (0.080)	4/248	NT	6.7%	coding (253/1530 nt)	PP_1263	fusaric acid resistance protein
	?	NC_002947	= 1444681	62 (1.270)					coding (298/1530 nt)	PP_1263	fusaric acid resistance protein
*	?	NC_002947	1447657 =	60 (1.220)	5 (0.110)	5/240	NT	8.2%	coding (1748/2178 nt)	PP_1264	fusaric acid resistance protein
	?	NC_002947	1447714 =	55 (1.170)					coding (1805/2178 nt)	PP_1264	fusaric acid resistance protein
*	?	NC_002947	1534637 =	55 (1.120)	3 (0.060)	3/238	NT	5.2%	coding (2606/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	1534671 =	57 (1.220)					coding (2640/2820 nt)	secA	protein translocase subunit SecA
*	?	NC_002947	= 1542794	50 (1.020)	3 (0.060)	3/236	NT	6.1%	coding (532/849 nt)	PP_1353	membrane protein
	?	NC_002947	= 1542815	45 (0.970)					coding (553/849 nt)	PP_1353	membrane protein
*	?	NC_002947	= 1556507	31 (0.630)	4 (0.080)	4/242	NT	11.8%	coding (369/852 nt)	purU‑II	formyltetrahydrofolate hydrolase
	?	NC_002947	= 1556530	30 (0.630)					coding (392/852 nt)	purU‑II	formyltetrahydrofolate hydrolase
*	?	NC_002947	= 1589058	64 (1.300)	5 (0.110)	4/236	NT	7.4%	coding (83/876 nt)	PP_1393	transcriptional regulator
	?	NC_002947	= 1589076	64 (1.380)					coding (65/876 nt)	PP_1393	transcriptional regulator
*	?	NC_002947	1657857 =	57 (1.160)	3 (0.070)	3/234	NT	5.2%	coding (679/1698 nt)	PP_1450	TPS family activation/secretion protein
	?	NC_002947	1657905 =	57 (1.240)					coding (631/1698 nt)	PP_1450	TPS family activation/secretion protein
*	?	NC_002947	= 1768955	38 (0.770)	4 (0.080)	4/240	NT	8.8%	coding (38/381 nt)	PP_5475	hypothetical protein
	?	NC_002947	= 1768978	46 (0.980)					coding (61/381 nt)	PP_5475	hypothetical protein
*	?	NC_002947	1838113 =	51 (1.040)	6 (0.130)	6/230	NT	9.5%	intergenic (+18/+86)	PP_1642/PP_1643	hypothetical protein/membrane protein
	?	NC_002947	1838195 =	68 (1.510)					intergenic (+100/+4)	PP_1642/PP_1643	hypothetical protein/membrane protein
*	?	NC_002947	1967188 =	12 (0.240)	6 (0.170)	5/184	NT	36.5%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967284 =	12 (0.330)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1967220	7 (0.140)	8 (0.220)	6/184	NT	48.3%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967250	12 (0.330)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
*	?	NC_002947	= 1970782	52 (1.060)	8 (0.190)	8/210	NT	15.7%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970844	42 (1.020)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
*	?	NC_002947	2045058 =	50 (1.020)	6 (0.120)	5/248	NT	10.1%	coding (229/1941 nt)	PP_1819	methyl‑accepting chemotaxis transducer
	?	NC_002947	2045091 =	57 (1.170)					coding (262/1941 nt)	PP_1819	methyl‑accepting chemotaxis transducer
*	?	NC_002947	= 2050638	26 (0.530)	10 (0.290)	7/176	NT	34.3%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	20 (0.580)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
*	?	NC_002947	= 2056021	54 (1.100)	5 (0.120)	5/218	NT	8.5%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2056095	61 (1.430)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein
*	?	NC_002947	= 2057866	36 (0.730)	3 (0.080)	3/202	NT	8.1%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2057906	39 (0.980)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein
*	?	NC_002947	2060566 =	54 (1.100)	6 (0.130)	5/236	NT	10.3%	coding (106/939 nt)	PP_1836	ZIP family metal transporter
	?	NC_002947	2060593 =	54 (1.170)					coding (79/939 nt)	PP_1836	ZIP family metal transporter
*	?	NC_002947	2063203 =	55 (1.120)	4 (0.100)	4/200	NT	10.3%	intergenic (+17/‑190)	PP_1838/PP_1839	membrane protein/hypothetical protein
	?	NC_002947	2063297 =	26 (0.660)					intergenic (+111/‑96)	PP_1838/PP_1839	membrane protein/hypothetical protein
*	?	NC_002947	= 2085573	42 (0.860)	7 (0.140)	5/248	NT	12.2%	intergenic (+239/‑356)	PP_1864/PP_1865	hypothetical protein/transposase
	?	NC_002947	= 4908169	59 (1.210)					intergenic (‑100/‑182)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	= 2100025	32 (0.650)	7 (0.170)	7/204	NT	18.2%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100074	37 (0.920)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
*	?	NC_002947	= 2214501	34 (0.690)	4 (0.080)	4/242	NT	10.8%	coding (226/954 nt)	PP_1957	Pdr/VanB family oxidoreductase
	?	NC_002947	= 2214515	33 (0.700)					coding (240/954 nt)	PP_1957	Pdr/VanB family oxidoreductase
*	?	NC_002947	2234970 =	53 (1.080)	5 (0.110)	5/238	NT	8.4%	coding (38/2016 nt)	uvrB	uvrABC excinuclease protein B
	?	NC_002947	2234999 =	59 (1.260)					coding (67/2016 nt)	uvrB	uvrABC excinuclease protein B
*	?	NC_002947	2258188 =	28 (0.570)	10 (0.210)	5/246	NT	26.6%	intergenic (+200/‑192)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 4908127	NA (NA)					intergenic (‑58/‑224)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	= 2263974	36 (0.730)	3 (0.060)	3/238	NT	7.5%	intergenic (+103/‑120)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
	?	NC_002947	= 2264002	40 (0.860)					intergenic (+131/‑92)	trpF/accD	N‑(5'‑phosphoribosyl)anthranilate isomerase/acetyl‑CoA carboxylase carboxyltransferase subunit beta
*	?	NC_002947	2295818 =	49 (1.000)	7 (0.180)	7/202	NT	17.4%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2295903 =	27 (0.680)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
*	?	NC_002947	= 2301552	45 (0.920)	5 (0.110)	5/222	NT	10.0%	intergenic (‑153/‑178)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	= 2301609	50 (1.150)					intergenic (‑210/‑121)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
*	?	NC_002947	2303163 =	48 (0.980)	6 (0.140)	5/226	NT	13.6%	intergenic (‑205/+90)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	2303221 =	33 (0.740)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
*	?	NC_002947	2309220 =	39 (0.800)	4 (0.090)	4/238	NT	10.2%	coding (845/960 nt)	PP_2032	ATPase
	?	NC_002947	2309267 =	33 (0.710)					coding (798/960 nt)	PP_2032	ATPase
*	?	NC_002947	2343937 =	35 (0.710)	4 (0.090)	4/238	NT	12.4%	coding (412/456 nt)	soxR	DNA‑binding transcriptional regulator
	?	NC_002947	2343971 =	23 (0.490)					coding (378/456 nt)	soxR	DNA‑binding transcriptional regulator
*	?	NC_002947	= 2365763	47 (0.960)	4 (0.080)	4/240	NT	7.8%	coding (156/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2365793	50 (1.060)					coding (186/906 nt)	lysR	transcriptional regulator LysR
*	?	NC_002947	= 2414787	28 (0.570)	5 (0.110)	3/234	NT	13.5%	intergenic (+286/‑59)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	4908051 =	38 (0.830)					coding (19/198 nt)	PP_4317	hypothetical protein
*	?	NC_002947	= 2414792	27 (0.550)	9 (0.190)	9/242	NT	25.6%	intergenic (+291/‑54)	PP_2114/PP_2115	transposase/hypothetical protein
	?	NC_002947	= 2414836	NA (NA)					intergenic (+335/‑10)	PP_2114/PP_2115	transposase/hypothetical protein
*	?	NC_002947	= 2426127	45 (0.920)	4 (0.080)	4/244	NT	9.0%	coding (810/942 nt)	PP_2127	sensor histidine kinase
	?	NC_002947	= 2426181	37 (0.770)					coding (756/942 nt)	PP_2127	sensor histidine kinase
*	?	NC_002947	= 2429960	24 (0.490)	6 (0.170)	6/184	NT	22.8%	intergenic (+47/+66)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
	?	NC_002947	= 2429975	23 (0.640)					intergenic (+62/+51)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
*	?	NC_002947	= 2452643	57 (1.160)	6 (0.130)	5/238	NT	9.8%	coding (2519/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	= 2452663	56 (1.200)					coding (2499/3450 nt)	mfd	transcription‑repair coupling factor
*	?	NC_002947	= 2462701	57 (1.160)	5 (0.110)	5/234	NT	8.2%	coding (414/699 nt)	lolD	lipoprotein‑releasing system ATP‑binding protein LolD
	?	NC_002947	= 2462715	58 (1.260)					coding (428/699 nt)	lolD	lipoprotein‑releasing system ATP‑binding protein LolD
*	?	NC_002947	= 2469275	33 (0.670)	4 (0.090)	4/234	NT	10.7%	coding (109/708 nt)	vacJ	lipoprotein VacJ
	?	NC_002947	= 2469297	36 (0.780)					coding (131/708 nt)	vacJ	lipoprotein VacJ
*	?	NC_002947	2474161 =	48 (0.980)	10 (0.250)	8/204	NT	24.6%	intergenic (‑23/+157)	PP_2167/tal	PhoD‑like phosphatase/transaldolase
	?	NC_002947	2474229 =	22 (0.550)					intergenic (‑91/+89)	PP_2167/tal	PhoD‑like phosphatase/transaldolase
*	?	NC_002947	2498403 =	60 (1.220)	3 (0.060)	3/238	NT	5.2%	coding (261/2454 nt)	PP_2193	ferric siderophore receptor
	?	NC_002947	2498425 =	53 (1.140)					coding (283/2454 nt)	PP_2193	ferric siderophore receptor
*	?	NC_002947	= 2522101	49 (1.000)	4 (0.080)	4/242	NT	6.9%	coding (3309/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2522133	60 (1.260)					coding (3341/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
*	?	NC_002947	2623058 =	37 (0.750)	4 (0.080)	4/244	NT	11.9%	coding (184/333 nt)	PP_5517	hypothetical protein
	?	NC_002947	2623092 =	23 (0.480)					coding (218/333 nt)	PP_5517	hypothetical protein
*	?	NC_002947	2646146 =	31 (0.630)	4 (0.090)	4/234	NT	11.6%	coding (1211/2499 nt)	PP_2316	ABC transporter permease
	?	NC_002947	2646184 =	32 (0.700)					coding (1173/2499 nt)	PP_2316	ABC transporter permease
*	?	NC_002947	2661073 =	44 (0.900)	3 (0.060)	3/244	NT	6.4%	intergenic (‑153/‑154)	PP_2332/PP_2333	hypothetical protein/GntR family transcriptional regulator
	?	NC_002947	2661095 =	45 (0.940)					intergenic (‑175/‑132)	PP_2332/PP_2333	hypothetical protein/GntR family transcriptional regulator
*	?	NC_002947	= 2676216	50 (1.020)	3 (0.070)	3/222	NT	5.9%	intergenic (‑39/‑199)	PP_2344/PP_2345	hypothetical protein/hypothetical protein
	?	NC_002947	= 2676262	52 (1.190)					intergenic (‑85/‑153)	PP_2344/PP_2345	hypothetical protein/hypothetical protein
*	?	NC_002947	= 2681535	40 (0.820)	5 (0.110)	5/242	NT	9.9%	coding (58/1890 nt)	prpE	propionyl‑CoA synthetase
	?	NC_002947	= 2681560	52 (1.100)					coding (83/1890 nt)	prpE	propionyl‑CoA synthetase
*	?	NC_002947	= 2740020	36 (0.730)	3 (0.060)	3/242	NT	7.8%	coding (2356/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2740051	36 (0.760)					coding (2387/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
*	?	NC_002947	= 2743949	47 (0.960)	5 (0.110)	5/236	NT	10.6%	coding (271/834 nt)	PP_2398	hypothetical protein
	?	NC_002947	= 2743962	40 (0.860)					coding (284/834 nt)	PP_2398	hypothetical protein
*	?	NC_002947	= 2801748	57 (1.160)	4 (0.080)	4/242	NT	7.1%	coding (89/1575 nt)	rbsA‑I	ribose ABC transporter ‑ ATP‑binding subunit
	?	NC_002947	= 2801807	50 (1.050)					coding (148/1575 nt)	rbsA‑I	ribose ABC transporter ‑ ATP‑binding subunit
*	?	NC_002947	= 2883565	49 (1.000)	4 (0.080)	4/240	NT	7.7%	coding (82/927 nt)	PP_2539	LysR family transcriptional regulator
	?	NC_002947	= 2883584	49 (1.040)					coding (101/927 nt)	PP_2539	LysR family transcriptional regulator
*	?	NC_002947	2974781 =	42 (0.860)	4 (0.090)	4/236	NT	8.8%	coding (671/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	2974820 =	43 (0.930)					coding (710/777 nt)	PP_2601	IclR family transcriptional regulator
*	?	NC_002947	2981188 =	55 (1.120)	3 (0.070)	3/230	NT	5.9%	coding (1220/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2981219 =	45 (1.000)					coding (1189/1734 nt)	PP_2607	hypothetical protein
*	?	NC_002947	3070249 =	43 (0.880)	4 (0.090)	3/236	NT	10.1%	coding (1295/1521 nt)	aldB‑II	aldehyde dehydrogenase
	?	NC_002947	3070310 =	31 (0.670)					coding (1356/1521 nt)	aldB‑II	aldehyde dehydrogenase
*	?	NC_002947	3214883 =	40 (0.820)	3 (0.070)	3/232	NT	7.6%	coding (755/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214934 =	36 (0.790)					coding (806/3129 nt)	mexD	multidrug RND transporter MexD
*	?	NC_002947	= 3270926	42 (0.860)	3 (0.070)	3/232	NT	6.7%	coding (1202/1953 nt)	PP_2869	FMN‑binding oxidoreductase
	?	NC_002947	= 3270943	45 (0.990)					coding (1185/1953 nt)	PP_2869	FMN‑binding oxidoreductase
*	?	NC_002947	= 3387448	48 (0.980)	5 (0.110)	5/234	NT	9.4%	coding (186/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3387482	52 (1.130)					coding (220/795 nt)	PP_2989	short‑chain dehydrogenase/reductase family oxidoreductase
*	?	NC_002947	= 3388268	32 (0.650)	4 (0.090)	4/238	NT	11.5%	coding (74/480 nt)	PP_2990	MerR family transcriptional regulator
	?	NC_002947	= 3388288	31 (0.660)					coding (94/480 nt)	PP_2990	MerR family transcriptional regulator
*	?	NC_002947	= 3427532	39 (0.800)	3 (0.060)	3/240	NT	7.6%	coding (1438/2037 nt)	PP_3042	terminase large subunit
	?	NC_002947	= 3427557	35 (0.740)					coding (1463/2037 nt)	PP_3042	terminase large subunit
*	?	NC_002947	= 3443151	50 (1.020)	3 (0.060)	3/238	NT	5.8%	coding (1867/3270 nt)	PP_3062	tail length determination protein
	?	NC_002947	= 3443177	49 (1.050)					coding (1893/3270 nt)	PP_3062	tail length determination protein
*	?	NC_002947	= 3464323	49 (1.000)	4 (0.100)	3/202	NT	8.5%	coding (78/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
	?	NC_002947	= 3464362	47 (1.190)					coding (39/1929 nt)	PP_3078	ABC transporter substrate‑binding protein
*	?	NC_002947	= 3481134	43 (0.880)	4 (0.080)	4/240	NT	7.2%	coding (128/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3481173	62 (1.320)					coding (89/2496 nt)	PP_3090	OmpA domain‑containing protein
*	?	NC_002947	= 3511747	43 (0.880)	3 (0.060)	4/238	NT	6.5%	coding (372/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3511759	45 (0.960)					coding (384/4158 nt)	PP_3108	rhs family protein
*	?	NC_002947	= 3526864	49 (1.000)	4 (0.080)	4/244	NT	7.9%	coding (32/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3526887	45 (0.940)					coding (55/1419 nt)	imuB	DNA repair DNA linked protein
*	?	NC_002947	3530961 =	52 (1.060)	3 (0.060)	3/242	NT	5.1%	coding (2735/3102 nt)	dnaEB	error‑prone DNA polymerase
	?	NC_002947	3531001 =	62 (1.310)					coding (2775/3102 nt)	dnaEB	error‑prone DNA polymerase
*	?	NC_002947	3552788 =	47 (0.960)	4 (0.080)	4/240	NT	8.6%	coding (402/978 nt)	PP_3137	group 2 family glycosyl transferase
	?	NC_002947	3552814 =	40 (0.850)					coding (428/978 nt)	PP_3137	group 2 family glycosyl transferase
*	?	NC_002947	= 3581719	44 (0.900)	4 (0.090)	4/232	NT	8.5%	coding (772/942 nt)	PP_3160	hypothetical protein
	?	NC_002947	= 3581735	45 (0.990)					coding (788/942 nt)	PP_3160	hypothetical protein
*	?	NC_002947	= 3588138	51 (1.040)	3 (0.060)	3/240	NT	5.8%	intergenic (+16/‑59)	catA‑II/benE‑II	catechol 1,2‑dioxygenase/benzoate transport protein
	?	NC_002947	= 3588208	48 (1.020)					coding (12/1272 nt)	benE‑II	benzoate transport protein
*	?	NC_002947	= 3676073	41 (0.840)	5 (0.110)	5/222	NT	12.1%	intergenic (+37/+55)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
	?	NC_002947	= 3676096	36 (0.830)					intergenic (+60/+32)	PP_3240/PP_5592	hypothetical protein/hypothetical protein
*	?	NC_002947	3776206 =	46 (0.940)	3 (0.060)	3/238	NT	6.6%	coding (208/363 nt)	PP_3338	cytochrome bd‑type quinol oxidase
	?	NC_002947	3776224 =	41 (0.880)					coding (226/363 nt)	PP_3338	cytochrome bd‑type quinol oxidase
*	?	NC_002947	3811617 =	38 (0.770)	6 (0.140)	5/224	NT	16.9%	intergenic (‑165/‑103)	PP_3367/PP_3368	hypothetical protein/MFS transporter
	?	NC_002947	3811664 =	25 (0.570)					intergenic (‑212/‑56)	PP_3367/PP_3368	hypothetical protein/MFS transporter
*	?	NC_002947	= 3966277	43 (0.880)	3 (0.070)	3/234	NT	5.8%	coding (426/2001 nt)	ydcP	peptidase
	?	NC_002947	= 3966297	58 (1.260)					coding (446/2001 nt)	ydcP	peptidase
*	?	NC_002947	3985558 =	51 (1.040)	7 (0.150)	3/240	NT	13.3%	coding (798/855 nt)	PP_3513	LysR family transcriptional regulator
	?	NC_002947	3985582 =	42 (0.890)					coding (822/855 nt)	PP_3513	LysR family transcriptional regulator
*	?	NC_002947	= 3991356	45 (0.920)	4 (0.080)	4/240	NT	8.1%	coding (315/894 nt)	PP_3517	hypothetical protein
	?	NC_002947	= 3991373	47 (1.000)					coding (298/894 nt)	PP_3517	hypothetical protein
*	?	NC_002947	= 4002976	57 (1.160)	3 (0.060)	3/238	NT	5.3%	coding (190/600 nt)	PP_3531	hypothetical protein
	?	NC_002947	= 4002991	54 (1.160)					coding (205/600 nt)	PP_3531	hypothetical protein
*	?	NC_002947	= 4022425	NA (NA)	14 (0.290)	6/250	NT	19.2%	intergenic (‑76/+592)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease
	?	NC_002947	= 4908170	59 (1.200)					intergenic (‑101/‑181)	PP_4317/PP_4318	hypothetical protein/transposase
*	?	NC_002947	4091366 =	44 (0.900)	6 (0.130)	6/240	NT	12.1%	intergenic (+8/‑70)	gudP/garD	glucarate transporter/galactarate dehydratase
	?	NC_002947	4091395 =	45 (0.960)					intergenic (+37/‑41)	gudP/garD	glucarate transporter/galactarate dehydratase
*	?	NC_002947	4140183 =	48 (0.980)	4 (0.090)	4/234	NT	9.4%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140222 =	32 (0.700)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
*	?	NC_002947	4159113 =	55 (1.120)	7 (0.160)	6/224	NT	11.7%	intergenic (+17/‑192)	PP_3661/PP_3662	membrane protein/hypothetical protein
	?	NC_002947	4159201 =	56 (1.270)					intergenic (+105/‑104)	PP_3661/PP_3662	membrane protein/hypothetical protein
*	?	NC_002947	4204746 =	44 (0.900)	3 (0.060)	3/236	NT	6.8%	coding (3074/6624 nt)	PP_3691	DNA helicase‑related protein
	?	NC_002947	4204786 =	41 (0.890)					coding (3034/6624 nt)	PP_3691	DNA helicase‑related protein
*	?	NC_002947	4240195 =	74 (1.510)	5 (0.110)	4/226	NT	7.7%	coding (139/900 nt)	PP_3717	LuxR family transcriptional regulator
	?	NC_002947	4240236 =	53 (1.200)					coding (98/900 nt)	PP_3717	LuxR family transcriptional regulator
*	?	NC_002947	4266585 =	56 (1.140)	4 (0.080)	4/240	NT	7.0%	intergenic (‑83/+63)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266605 =	52 (1.100)					intergenic (‑103/+43)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
*	?	NC_002947	= 4336960	38 (0.770)	4 (0.090)	4/238	NT	10.8%	coding (299/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	= 4337011	30 (0.640)					coding (248/885 nt)	PP_3811	LysR family transcriptional regulator
*	?	NC_002947	4395254 =	75 (1.530)	4 (0.090)	4/236	NT	5.8%	coding (564/594 nt)	PP_3871	hypothetical protein
	?	NC_002947	4395288 =	59 (1.270)					coding (530/594 nt)	PP_3871	hypothetical protein
*	?	NC_002947	4524439 =	61 (1.240)	7 (0.160)	7/222	NT	12.7%	intergenic (+18/‑175)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
	?	NC_002947	4524474 =	42 (0.960)					intergenic (+53/‑140)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
*	?	NC_002947	4524512 =	39 (0.800)	8 (0.180)	7/222	NT	20.1%	intergenic (+91/‑102)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
	?	NC_002947	4524584 =	29 (0.670)					intergenic (+163/‑30)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
*	?	NC_002947	= 4533623	76 (1.550)	5 (0.110)	5/226	NT	7.7%	intergenic (+21/‑153)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
	?	NC_002947	= 4533688	52 (1.170)					intergenic (+86/‑88)	PP_4020/cpo	oxidoreductase/non‑heme chloroperoxidase
*	?	NC_002947	= 4560816	50 (1.020)	5 (0.100)	5/244	NT	9.4%	coding (777/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	= 4560831	48 (1.000)					coding (762/1404 nt)	PP_4048	hypothetical protein
*	?	NC_002947	= 4570378	79 (1.610)	4 (0.090)	4/236	NT	5.1%	coding (198/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4570402	75 (1.620)					coding (222/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	= 4572333	43 (0.880)	6 (0.130)	5/238	NT	12.4%	coding (2153/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	= 4572365	44 (0.940)					coding (2185/2775 nt)	treY	maltooligosyl trehalose synthase
*	?	NC_002947	4573251 =	57 (1.160)	5 (0.130)	5/200	NT	9.8%	intergenic (+15/‑122)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	4573318 =	46 (1.170)					intergenic (+82/‑55)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
*	?	NC_002947	4586063 =	10 (0.200)	14 (0.410)	13/174	NT	71.9%	intergenic (+102/+115)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	4586167 =	4 (0.120)					intergenic (+206/+11)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4586100	8 (0.160)	11 (0.320)	7/174	NT	69.7%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	4 (0.120)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
*	?	NC_002947	= 4647641	15 (0.310)	5 (0.150)	4/172	NT	29.1%	intergenic (+48/+83)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	= 4647671	14 (0.410)					intergenic (+78/+53)	fusB/PP_4112	elongation factor G 2/sulfate transporter
*	?	NC_002947	= 4677103	54 (1.100)	5 (0.110)	5/238	NT	8.9%	coding (1517/2250 nt)	ldcC	lysine decarboxylase
	?	NC_002947	= 4677132	51 (1.090)					coding (1488/2250 nt)	ldcC	lysine decarboxylase
*	?	NC_002947	4683211 =	44 (0.900)	4 (0.100)	4/206	NT	10.1%	intergenic (+24/‑197)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
	?	NC_002947	4683303 =	35 (0.870)					intergenic (+116/‑105)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
*	?	NC_002947	4765424 =	59 (1.200)	4 (0.090)	4/234	NT	6.3%	coding (32/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4765465 =	64 (1.390)					coding (73/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4765474 =	60 (1.220)	4 (0.090)	4/236	NT	6.9%	coding (82/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
	?	NC_002947	4765507 =	51 (1.100)					coding (115/2439 nt)	fpvA	TonB‑dependent outer membrane ferripyoverdine receptor FpvA
*	?	NC_002947	4785811 =	52 (1.060)	3 (0.060)	3/244	NT	5.6%	coding (1548/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4785847 =	51 (1.070)					coding (1512/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
*	?	NC_002947	4808219 =	0 (0.000)	32 (0.910)	22/180	NT	66.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	33 (0.930)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
*	?	NC_002947	4828690 =	74 (1.510)	4 (0.090)	4/232	NT	5.7%	coding (2545/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4828734 =	63 (1.380)					coding (2501/12954 nt)	pvdL	non‑ribosomal peptide synthetase
*	?	NC_002947	= 4847120	50 (1.020)	4 (0.090)	4/230	NT	7.8%	coding (1825/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	NC_002947	= 4847142	49 (1.090)					coding (1847/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
*	?	NC_002947	= 4852498	26 (0.530)	4 (0.120)	4/168	NT	16.5%	intergenic (‑124/+173)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
	?	NC_002947	= 4852557	23 (0.700)					intergenic (‑183/+114)	recR/ybaB	recombination protein RecR/nucleoid‑associated broad specificity regulator
*	?	NC_002947	4876390 =	60 (1.220)	3 (0.070)	3/224	NT	5.3%	intergenic (+183/+254)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
	?	NC_002947	4876494 =	54 (1.230)					intergenic (+287/+150)	PP_4284/pucM	transporter/5‑hydroxyisourate hydrolase
*	?	NC_002947	= 4886209	39 (0.800)	5 (0.130)	5/192	NT	13.2%	intergenic (+43/+80)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
	?	NC_002947	= 4886238	36 (0.960)					intergenic (+72/+51)	PP_4295/PP_4296	TetR family transcriptional regulator/hypothetical protein
*	?	NC_002947	= 4889902	48 (0.980)	4 (0.080)	4/240	NT	8.1%	coding (151/894 nt)	glxR	2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889909	45 (0.960)					coding (158/894 nt)	glxR	2‑hydroxy‑3‑oxopropionate reductase
*	?	NC_002947	= 4893624	56 (1.140)	7 (0.180)	7/196	NT	13.0%	intergenic (+54/‑154)	pyk/PP_4302	pyruvate kinase/urea transporter
	?	NC_002947	= 4893649	50 (1.300)					intergenic (+79/‑129)	pyk/PP_4302	pyruvate kinase/urea transporter
*	?	NC_002947	= 4896443	48 (0.980)	10 (0.250)	7/208	NT	18.4%	intergenic (+31/‑177)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896490	49 (1.200)					intergenic (+78/‑130)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
*	?	NC_002947	= 4954392	41 (0.840)	3 (0.060)	3/244	NT	7.0%	coding (85/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4954427	40 (0.840)					coding (50/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
*	?	NC_002947	5007888 =	41 (0.840)	3 (0.060)	3/236	NT	7.3%	intergenic (+222/‑677)	PP_5674/PP_4411	hypothetical protein/hypothetical protein
	?	NC_002947	5007917 =	37 (0.800)					intergenic (+251/‑648)	PP_5674/PP_4411	hypothetical protein/hypothetical protein
*	?	NC_002947	= 5106327	46 (0.940)	3 (0.060)	3/240	NT	6.1%	coding (1833/3021 nt)	ydiJ	putative oxidoreductase
	?	NC_002947	= 5106375	48 (1.020)					coding (1785/3021 nt)	ydiJ	putative oxidoreductase
*	?	NC_002947	5121259 =	46 (0.940)	3 (0.070)	3/234	NT	6.6%	coding (854/1455 nt)	trkH‑II	potassium transporter
	?	NC_002947	5121292 =	42 (0.910)					coding (887/1455 nt)	trkH‑II	potassium transporter
*	?	NC_002947	= 5162643	30 (0.610)	4 (0.100)	4/198	NT	15.2%	intergenic (+118/+83)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
	?	NC_002947	= 5162675	21 (0.540)					intergenic (+150/+51)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase
*	?	NC_002947	5237563 =	39 (0.800)	4 (0.090)	4/232	NT	10.9%	coding (346/348 nt)	PP_5700	hypothetical protein
	?	NC_002947	5237620 =	29 (0.640)					coding (32/387 nt)	PP_4614	hypothetical protein
*	?	NC_002947	= 5263860	53 (1.080)	4 (0.080)	4/242	NT	7.0%	coding (435/972 nt)	zinU	P‑loop guanosine triphosphatase‑dependent zinc chaperone
	?	NC_002947	= 5263885	55 (1.160)					coding (410/972 nt)	zinU	P‑loop guanosine triphosphatase‑dependent zinc chaperone
*	?	NC_002947	5276126 =	44 (0.900)	3 (0.060)	3/238	NT	6.5%	coding (619/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I
	?	NC_002947	5276148 =	44 (0.940)					coding (597/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I
*	?	NC_002947	5279912 =	39 (0.800)	3 (0.070)	3/232	NT	7.2%	coding (83/1086 nt)	trmA	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA
	?	NC_002947	5279973 =	41 (0.900)					coding (144/1086 nt)	trmA	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA
*	?	NC_002947	= 5280967	34 (0.690)	8 (0.200)	7/200	NT	20.5%	intergenic (+52/+86)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
	?	NC_002947	= 5281003	35 (0.890)					intergenic (+88/+50)	trmA/pcaG	tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA/protocatechuate 3,4‑dioxygenase subunit alpha
*	?	NC_002947	= 5288471	40 (0.820)	3 (0.080)	3/190	NT	6.9%	intergenic (‑104/+80)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	= 5288505	50 (1.340)					intergenic (‑138/+46)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
*	?	NC_002947	5318238 =	41 (0.840)	3 (0.070)	3/234	NT	8.2%	coding (1184/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
	?	NC_002947	5318270 =	29 (0.630)					coding (1152/1725 nt)	ilvI	acetohydroxybutanoate synthase/acetolactate synthase
*	?	NC_002947	= 5331738	42 (0.860)	3 (0.060)	3/240	NT	6.4%	intergenic (‑130/‑81)	PP_4692/dksA	aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA
	?	NC_002947	= 5331762	48 (1.020)					intergenic (‑154/‑57)	PP_4692/dksA	aspartate/tyrosine/aromatic aminotransferase/RNA polymerase‑binding transcription factor DksA
*	?	NC_002947	= 5443256	60 (1.220)	4 (0.090)	4/238	NT	6.6%	coding (1572/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	= 5443262	56 (1.200)					coding (1566/1989 nt)	PP_4781	sensor histidine kinase
*	?	NC_002947	= 5454649	NA (NA)	8 (0.170)	4/240	NT	NA	coding (1260/1329 nt)	PP_4791	transposase
	?	NC_002947	5545214 =	NA (NA)					intergenic (‑306/+571)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
*	?	NC_002947	= 5477496	44 (0.900)	4 (0.080)	4/240	NT	8.9%	coding (345/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477510	40 (0.850)					coding (331/594 nt)	PP_4814	ATP‑dependent protease La domain‑containing protein
*	?	NC_002947	5485172 =	56 (1.140)	8 (0.210)	7/198	NT	17.1%	intergenic (+30/‑117)	purH/purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
	?	NC_002947	5485246 =	33 (0.850)					intergenic (+104/‑43)	purH/purD	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase/phosphoribosylamine‑‑glycine ligase
*	?	NC_002947	5519873 =	64 (1.300)	5 (0.110)	4/230	NT	7.2%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5519958 =	70 (1.550)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
*	?	NC_002947	5520681 =	52 (1.060)	4 (0.090)	4/238	NT	7.4%	coding (679/882 nt)	PP_4853	DMT superfamily permease
	?	NC_002947	5520727 =	50 (1.070)					coding (725/882 nt)	PP_4853	DMT superfamily permease
*	?	NC_002947	= 5537105	60 (1.220)	17 (0.440)	14/196	NT	24.5%	intergenic (+34/+69)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	= 5537127	58 (1.510)					intergenic (+56/+47)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
*	?	NC_002947	5538592 =	55 (1.120)	9 (0.220)	8/208	NT	18.4%	intergenic (+34/+87)	PP_4871/PP_4872	lysine decarboxylase family protein/hypothetical protein
	?	NC_002947	5538647 =	34 (0.830)					intergenic (+89/+32)	PP_4871/PP_4872	lysine decarboxylase family protein/hypothetical protein
*	?	NC_002947	5560785 =	67 (1.370)	5 (0.110)	5/224	NT	7.8%	intergenic (‑238/+64)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
	?	NC_002947	5560822 =	59 (1.340)					intergenic (‑275/+27)	hisZ/hflC	ATP phosphoribosyltransferase regulatory subunit/integral membrane ATP‑dependent zinc metallopeptidase
*	?	NC_002947	5586716 =	54 (1.100)	3 (0.060)	3/242	NT	5.1%	coding (621/1026 nt)	PP_4914	phytase‑like protein
	?	NC_002947	5586744 =	59 (1.240)					coding (593/1026 nt)	PP_4914	phytase‑like protein
*	?	NC_002947	5591617 =	48 (0.980)	11 (0.240)	8/236	NT	19.1%	coding (316/630 nt)	nudF	ADP‑ribose/sugar pyrophosphatase
	?	NC_002947	5591646 =	48 (1.040)					coding (287/630 nt)	nudF	ADP‑ribose/sugar pyrophosphatase
*	?	NC_002947	= 5605337	59 (1.200)	4 (0.080)	4/240	NT	5.9%	coding (661/1419 nt)	PP_4926	HlyD family secretion protein
	?	NC_002947	= 5605372	70 (1.490)					coding (626/1419 nt)	PP_4926	HlyD family secretion protein
*	?	NC_002947	= 5609699	42 (0.860)	6 (0.130)	5/240	NT	12.2%	coding (867/906 nt)	PP_4929	LysR family transcriptional regulator
	?	NC_002947	= 5609710	46 (0.980)					coding (856/906 nt)	PP_4929	LysR family transcriptional regulator
*	?	NC_002947	= 5627662	49 (1.000)	3 (0.060)	3/238	NT	5.0%	intergenic (‑110/+83)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
	?	NC_002947	= 5627735	67 (1.440)					intergenic (‑183/+10)	PP_4944/rlmJ	carbamoyltransferase/23S rRNA (adenine(2030)‑N(6))‑methyltransferase
*	?	NC_002947	5698783 =	66 (1.350)	6 (0.140)	6/216	NT	10.6%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698866 =	44 (1.040)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
*	?	NC_002947	5734099 =	64 (1.300)	5 (0.120)	5/220	NT	8.3%	intergenic (‑69/+88)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
	?	NC_002947	5734152 =	54 (1.250)					intergenic (‑122/+35)	proY/hutH	proline (histidine) APC transporter/histidine ammonia‑lyase
*	?	NC_002947	= 5735744	51 (1.040)	5 (0.110)	5/240	NT	8.9%	intergenic (‑25/+84)	hutH/hutU	histidine ammonia‑lyase/urocanate hydratase
	?	NC_002947	= 5735771	53 (1.130)					intergenic (‑52/+57)	hutH/hutU	histidine ammonia‑lyase/urocanate hydratase
*	?	NC_002947	= 5743386	70 (1.430)	11 (0.240)	9/232	NT	16.3%	intergenic (‑163/+84)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	= 5743450	48 (1.050)					intergenic (‑227/+20)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	5743392 =	70 (1.430)	7 (0.160)	7/224	NT	11.7%	intergenic (‑169/+78)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
	?	NC_002947	5743446 =	43 (0.980)					intergenic (‑223/+24)	fbp/glgP	class 1 fructose‑1,6‑bisphosphatase/glycogen phosphorylase
*	?	NC_002947	= 5759456	57 (1.160)	5 (0.110)	5/236	NT	9.1%	intergenic (+9/+147)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
	?	NC_002947	= 5759554	46 (0.990)					intergenic (+107/+49)	trmL/secB	tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB
*	?	NC_002947	5874604 =	71 (1.450)	6 (0.130)	6/228	NT	8.1%	intergenic (‑40/+108)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
	?	NC_002947	5874686 =	71 (1.590)					intergenic (‑122/+26)	PP_5148/ilvA‑II	membrane protein/threonine deaminase
*	?	NC_002947	5877040 =	83 (1.690)	9 (0.230)	7/202	NT	12.8%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877122 =	56 (1.410)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
*	?	NC_002947	5895473 =	52 (1.060)	6 (0.130)	6/242	NT	10.1%	coding (759/819 nt)	cysU	sulfate ABC transporter permease CysT
	?	NC_002947	5895510 =	57 (1.200)					coding (722/819 nt)	cysU	sulfate ABC transporter permease CysT
*	?	NC_002947	5899429 =	48 (0.980)	5 (0.110)	4/236	NT	10.8%	coding (1515/3054 nt)	PP_5173	RND family transporter
	?	NC_002947	5899449 =	37 (0.800)					coding (1495/3054 nt)	PP_5173	RND family transporter
*	?	NC_002947	5903827 =	51 (1.040)	7 (0.160)	7/218	NT	14.2%	intergenic (+27/+80)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
	?	NC_002947	5903887 =	40 (0.940)					intergenic (+87/+20)	PP_5176/spuH	hypothetical protein/spermidine/putrescine ABC transporter permease
*	?	NC_002947	= 5914240	22 (0.450)	6 (0.160)	6/194	NT	27.2%	intergenic (+76/+77)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	= 5914280	15 (0.390)					intergenic (+116/+37)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
*	?	NC_002947	5947143 =	36 (0.730)	5 (0.110)	5/228	NT	11.5%	intergenic (‑79/+127)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
	?	NC_002947	5947248 =	44 (0.980)					intergenic (‑184/+22)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
*	?	NC_002947	= 5947182	35 (0.710)	3 (0.070)	3/226	NT	7.6%	intergenic (‑118/+88)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
	?	NC_002947	= 5947205	41 (0.920)					intergenic (‑141/+65)	ubiD/rho	3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/transcription termination factor Rho
*	?	NC_002947	= 5971629	32 (0.650)	3 (0.060)	3/240	NT	8.9%	coding (153/222 nt)	PP_5237	hypothetical protein
	?	NC_002947	= 5971643	31 (0.660)					coding (167/222 nt)	PP_5237	hypothetical protein
*	?	NC_002947	6009165 =	24 (0.490)	16 (0.440)	11/184	NT	63.2%	intergenic (+6/+76)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
	?	NC_002947	6009242 =	1 (0.030)					coding (1667/1668 nt)	PP_5263	GGDEF domain‑containing protein
*	?	NC_002947	6009202 =	14 (0.290)	4 (0.080)	4/240	NT	35.7%	intergenic (+43/+39)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
	?	NC_002947	6009233 =	1 (0.020)					intergenic (+74/+8)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
*	?	NC_002947	= 6019326	59 (1.200)	5 (0.120)	4/204	NT	8.5%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019356	59 (1.470)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
*	?	NC_002947	= 6027969	43 (0.880)	10 (0.250)	9/208	NT	20.2%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6027984	43 (1.050)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
*	?	NC_002947	6061542 =	65 (1.330)	7 (0.150)	7/238	NT	9.7%	intergenic (‑119/+69)	hupA/alkT	DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase
	?	NC_002947	6061566 =	69 (1.480)					intergenic (‑143/+45)	hupA/alkT	DNA‑binding protein HU‑alpha/rubredoxin‑NAD(+) reductase
*	?	NC_002947	= 6077900	42 (0.860)	4 (0.100)	4/202	NT	9.4%	intergenic (‑146/+92)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
	?	NC_002947	= 6077952	43 (1.090)					intergenic (‑198/+40)	PP_5329/PP_5330	phosphate ABC transporter substrate‑binding protein/MFS transporter
*	?	NC_002947	= 6152896	48 (0.980)	6 (0.130)	5/234	NT	12.6%	coding (421/489 nt)	PP_5738	hypothetical protein
	?	NC_002947	= 6152922	38 (0.830)					coding (447/489 nt)	PP_5738	hypothetical protein