mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 31,629 | G→A | 7.7% | V271V (GTG→GTA) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | 67,858 | G→A | 13.9% | I160I (ATC→ATT) | araA ← | L‑arabinose isomerase |
| RA | 70,434 | C→T | 91.5% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 89.5% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 93.7% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 93.5% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 93.8% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 92.9% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 91.0% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 93.1% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 91.1% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 77,316 | T→C | 9.4% | intergenic (‑17/‑305) | sgrR ← / → setA | DNA‑binding transcriptional regulator/broad specificity sugar efflux system |
| RA | 120,479 | G→A | 10.5% | A358V (GCT→GTT) | aroP ← | aromatic amino acid transporter |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 181,321 | C→T | 10.4% | G146G (GGC→GGT) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,474 | T→C | 10.8% | F197F (TTT→TTC) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,477 | T→C | 9.7% | G198G (GGT→GGC) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,489 | G→A | 8.9% | T202T (ACG→ACA) | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 236,101 | A→C | 92.8% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 92.7% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 363,547 | A→G | 17.8% | G661G (GGT→GGC) | lacZ ← | beta‑D‑galactosidase |
| RA | 363,556 | C→T | 13.9% | A658A (GCG→GCA) | lacZ ← | beta‑D‑galactosidase |
| RA | 363,576 | G→A | 12.1% | L652F (CTC→TTC) | lacZ ← | beta‑D‑galactosidase |
| RA | 383,415 | G→A | 12.9% | C142C (TGC→TGT) | yaiS ← | conserved hypothetical protein |
| RA | 393,537 | T→C | 11.6% | F433F (TTT→TTC) | yaiU → | hypothetical protein |
| RA | 427,941 | T→C | 11.6% | T357T (ACT→ACC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 430,884 | G→A | 7.7% | F118F (TTC→TTT) | tsx ← | nucleoside channel, receptor of phage T6 and colicin K |
| RA | 436,226 | G→A | 15.7% | V138V (GTG→GTA) | pgpA → | phosphatidylglycerophosphatase A |
| RA | 436,250 | C→T | 12.2% | I146I (ATC→ATT) | pgpA → | phosphatidylglycerophosphatase A |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 552,978 | C→T | 14.7% | A62A (GCG→GCA) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 552,981 | C→T | 15.1% | A61A (GCG→GCA) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 552,984 | C→G | 15.1% | A60A (GCG→GCC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 552,992 | T→G | 15.2% | K58Q (AAG→CAG) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 552,994 | C→T | 14.3% | R57H (CGC→CAC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 552,999 | G→A | 15.1% | L55L (CTC→CTT) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 553,023 | A→G | 16.7% | I47I (ATT→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 553,029 | T→G | 17.3% | A45A (GCA→GCC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphatase |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 575,770 | G→A | 100% | pseudogene (339/1128 nt) | nmpC ← | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
| RA | 598,515 | C→T | 20.6% | P193P (CCC→CCT) | cusA → | copper/silver efflux system, membrane component |
| RA | 644,865 | A→T | 8.0% | V313V (GTT→GTA) | citT ← | citrate:succinate antiporter |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 670,276 | A→C | 11.5% | L18L (CTT→CTG) | cobC ← | predicted alpha‑ribazole‑5'‑P phosphatase |
| RA | 670,287 | T→C | 10.5% | I15V (ATC→GTC) | cobC ← | predicted alpha‑ribazole‑5'‑P phosphatase |
| RA | 685,138 | C→G | 16.4% | V180V (GTG→GTC) | gltL ← | glutamate and aspartate transporter subunit |
| RA | 685,153 | T→C | 19.6% | V175V (GTA→GTG) | gltL ← | glutamate and aspartate transporter subunit |
| RA | 686,570 | T→G | 19.1% | S174S (TCA→TCC) | gltJ ← | glutamate and aspartate transporter subunit |
| RA | 701,210 | A→G | 18.2% | A269A (GCT→GCC) | nagC ← | DNA‑binding transcriptional dual regulator |
| RA | 726,688 | C→T | 14.8% | A257A (GCG→GCA) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 740,339 | T→G | 7.3% | P137P (CCT→CCG) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 740,342 | C→G | 7.0% | G138G (GGC→GGG) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 740,354 | C→T | 7.4% | T142T (ACC→ACT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 775,916 | C→T | 12.5% | I114I (ATC→ATT) | tolQ → | membrane spanning protein in TolA‑TolQ‑TolR complex |
| RA | 775,925 | C→T | 11.3% | N117N (AAC→AAT) | tolQ → | membrane spanning protein in TolA‑TolQ‑TolR complex |
| RA | 775,958 | G→T | 10.3% | P128P (CCG→CCT) | tolQ → | membrane spanning protein in TolA‑TolQ‑TolR complex |
| RA | 797,279 | T→G | 7.1% | S102A (TCG→GCG) | modC → | molybdate transporter subunit |
| RA | 797,287 | T→C | 6.9% | S104S (AGT→AGC) | modC → | molybdate transporter subunit |
| RA | 797,294 | G→A | 6.3% | D107N (GAT→AAT) | modC → | molybdate transporter subunit |
| RA | 798,591 | A→T | 11.1% | I88N (ATT→AAT) | ybhA ← | predicted hydrolase |
| RA | 811,900 | T→A | 11.4% | A366A (GCT→GCA) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 902,100 | T→G | 10.2% | T191T (ACA→ACC) | artQ ← | arginine transporter subunit |
| RA | 902,106 | C→T | 9.2% | L189L (CTG→CTA) | artQ ← | arginine transporter subunit |
| RA | 903,018 | T→A | 8.8% | V131V (GTA→GTT) | artI ← | arginine transporter subunit |
| RA | 912,872 | T→A | 7.7% | A455A (GCA→GCT) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] protein in anaerobic terminal reductases |
| RA | 944,111 | T→C | 14.5% | V92V (GTT→GTC) | dmsB → | dimethyl sulfoxide reductase, anaerobic, subunit B |
| RA | 944,114 | G→T | 14.2% | V93V (GTG→GTT) | dmsB → | dimethyl sulfoxide reductase, anaerobic, subunit B |
| RA | 944,132 | C→T | 17.4% | C99C (TGC→TGT) | dmsB → | dimethyl sulfoxide reductase, anaerobic, subunit B |
| RA | 1,017,036 | C→T | 6.6% | A562A (GCG→GCA) | ycbZ ← | predicted peptidase |
| RA | 1,054,525 | T→G | 11.9% | L692L (CTA→CTC) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,094,325 | A→G | 9.4% | N343S (AAT→AGT) | ycdT → | predicted diguanylate cyclase |
| RA | 1,101,395 | G→A | 10.2% | R177R (CGC→CGT) | csgG ← | outer membrane lipoprotein |
| RA | 1,174,888 | C→A | 13.8% | P218P (CCG→CCT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,180,003 | T→C | 12.7% | D369D (GAT→GAC) | lolE → | outer membrane‑specific lipoprotein transporter subunit |
| RA | 1,180,007 | C→T | 12.0% | L371L (CTG→TTG) | lolE → | outer membrane‑specific lipoprotein transporter subunit |
| RA | 1,237,886 | A→G | 11.6% | F311F (TTT→TTC) | ycgB ← | conserved hypothetical protein |
| RA | 1,285,540 | G→A | 43.7% | S120S (TCG→TCA) | narH → | nitrate reductase 1, beta (Fe‑S) subunit |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,302,548 | A→G | 13.1% | intergenic (+190/‑348) | insD → / → oppA | IS2 element protein/oligopeptide transporter subunit |
| RA | 1,302,550 | A→T | 12.8% | intergenic (+192/‑346) | insD → / → oppA | IS2 element protein/oligopeptide transporter subunit |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,313,544 | A→G | 42.8% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD complex/predicted hydrolase |
| RA | 1,313,545 | C→T | 45.8% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD complex/predicted hydrolase |
| RA | 1,355,750 | A→G | 10.6% | A161A (GCT→GCC) | sapC ← | predicted antimicrobial peptide transporter subunit |
| RA | 1,355,756 | G→A | 8.9% | S159S (TCC→TCT) | sapC ← | predicted antimicrobial peptide transporter subunit |
| RA | 1,442,292 | G→A | 8.7% | G69G (GGC→GGT) | ydbK ← | fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase |
| RA | 1,661,831 | A→T | 10.9% | R683S (AGA→AGT) | ynfE → | oxidoreductase subunit |
| RA | 1,661,832 | A→G | 10.9% | T684A (ACC→GCC) | ynfE → | oxidoreductase subunit |
| RA | 1,662,156 | C→G | 20.3% | L792V (CTG→GTG) | ynfE → | oxidoreductase subunit |
| RA | 1,724,458 | A→T | 7.9% | A208A (GCA→GCT) | ydhK → | conserved inner membrane protein |
| RA | 1,726,822 | G→A | 15.9% | T175T (ACC→ACT) | ydhF ← | predicted oxidoreductase |
| RA | 1,726,828 | C→T | 12.7% | P173P (CCG→CCA) | ydhF ← | predicted oxidoreductase |
| RA | 1,726,834 | A→G | 11.7% | R171R (CGT→CGC) | ydhF ← | predicted oxidoreductase |
| RA | 1,739,599 | C→A | 13.4% | S14S (TCC→TCA) | purR → | DNA‑binding transcriptional repressor, hypoxanthine‑binding |
| RA | 1,748,488 | A→G | 11.1% | P25P (CCA→CCG) | ydhR → | hypothetical protein |
| RA | 1,927,471 | T→A | 9.3% | P106P (CCT→CCA) | yobB → | conserved hypothetical protein |
| RA | 1,927,490 | C→T | 9.4% | H113Y (CAT→TAT) | yobB → | conserved hypothetical protein |
| RA | 1,951,613 | A→G | 7.7% | R208R (CGT→CGC) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,951,622 | A→G | 7.4% | G205G (GGT→GGC) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,955,326 | T→G | 10.0% | L57L (CTT→CTG) | yecP → | predicted methyltransferase |
| RA | 1,969,921 | G→A | 22.7% | L99L (CTG→TTG) | cheB ← | fused chemotaxis regulator and protein‑glutamate methylesterase in two‑component regulatory system with CheA |
| RA | 1,973,098 | G→A | 12.0% | A436A (GCC→GCT) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,979,220 | T→C | 10.4% | P113P (CCA→CCG) | flhC ← | DNA‑binding transcriptional regulator with FlhD |
| RA | 1,979,442 | G→A | 18.1% | R39R (CGC→CGT) | flhC ← | DNA‑binding transcriptional regulator with FlhD |
| RA | 2,089,667 | A→C | 11.2% | R243R (CGT→CGG) | yeeY ← | predicted DNA‑binding transcriptional regulator |
| RA | 2,119,282 | C→T | 21.9% | E420E (GAG→GAA) | wcaK ← | predicted pyruvyl transferase |
| RA | 2,119,294 | C→T | 23.2% | Q416Q (CAG→CAA) | wcaK ← | predicted pyruvyl transferase |
| RA | 2,119,312 | T→C | 14.7% | T410T (ACA→ACG) | wcaK ← | predicted pyruvyl transferase |
| RA | 2,119,321 | C→T | 12.8% | E407E (GAG→GAA) | wcaK ← | predicted pyruvyl transferase |
| RA | 2,122,101 | C→G | 11.5% | S65S (TCG→TCC) | wzxC ← | colanic acid exporter |
| RA | 2,122,143 | G→A | 14.3% | I51I (ATC→ATT) | wzxC ← | colanic acid exporter |
| RA | 2,122,146 | A→G | 13.2% | I50I (ATT→ATC) | wzxC ← | colanic acid exporter |
| RA | 2,127,320 | G→A | 6.1% | A188A (GCC→GCT) | wcaI ← | predicted glycosyl transferase |
| RA | 2,135,190 | T→A | 6.9% | T115T (ACA→ACT) | wcaA ← | predicted glycosyl transferase |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| RA | 2,278,280 | C→T | 11.6% | R256R (CGC→CGT) | yejB → | predicted oligopeptide transporter subunit |
| RA | 2,279,035 | G→A | 11.1% | S143S (TCG→TCA) | yejE → | predicted oligopeptide transporter subunit |
| RA | 2,320,580 | G→A | 6.6% | N52N (AAC→AAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,405,233 | A→G | 17.2% | H331H (CAT→CAC) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,419,932 | A→G | 12.2% | A339A (GCA→GCG) | ackA → | acetate kinase A and propionate kinase 2 |
| RA | 2,546,874 | G→A | 7.8% | G84G (GGC→GGT) | cysW ← | sulfate/thiosulfate transporter subunit |
| RA | 2,546,906 | G→A | 7.5% | L74L (CTG→TTG) | cysW ← | sulfate/thiosulfate transporter subunit |
| RA | 2,580,771 | C→T | 7.2% | L221L (TTG→TTA) | ypfG ← | hypothetical protein |
| RA | 2,580,774 | T→C | 7.3% | P220P (CCA→CCG) | ypfG ← | hypothetical protein |
| RA | 2,580,786 | G→A | 7.2% | C216C (TGC→TGT) | ypfG ← | hypothetical protein |
| RA | 2,674,927 | C→T | 21.4% | L185L (TTG→TTA) | yphD ← | predicted sugar transporter subunit |
| RA | 2,674,933 | A→C | 18.2% | I183M (ATT→ATG) | yphD ← | predicted sugar transporter subunit |
| RA | 2,677,646 | C→A | 24.9% | G126G (GGG→GGT) | yphF ← | predicted sugar transporter subunit |
| RA | 2,677,682 | C→T | 15.1% | P114P (CCG→CCA) | yphF ← | predicted sugar transporter subunit |
| RA | 2,717,255 | A→T | 23.5% | intergenic (‑71/‑136) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| RA | 2,717,266 | C→T | 20.5% | intergenic (‑82/‑125) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| RA | 2,717,268 | A→T | 18.8% | intergenic (‑84/‑123) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| RA | 2,717,279 | T→C | 17.0% | intergenic (‑95/‑112) | yfiF ← / → trxC | predicted methyltransferase/thioredoxin 2 |
| RA | 2,721,287 | T→C | 5.8% | intergenic (+18/‑96) | yfiQ → / → pssA | fused predicted acyl‑CoA synthetase NAD(P)‑binding subunit and ATP‑binding subunit/phosphatidylserine synthase |
| RA | 2,737,004 | A→G | 15.0% | T202A (ACC→GCC) | pheA → | fused chorismate mutase P and prephenate dehydratase |
| RA | 2,738,198 | T→C | 11.3% | S176S (TCA→TCG) | tyrA ← | fused chorismate mutase T and prephenate dehydrogenase |
| RA | 2,738,210 | G→A | 10.5% | V172V (GTC→GTT) | tyrA ← | fused chorismate mutase T and prephenate dehydrogenase |
| RA | 2,805,127 | C→A | 12.8% | T154T (ACC→ACA) | proW → | glycine betaine transporter subunit |
| RA | 2,805,151 | C→A | 9.4% | I162I (ATC→ATA) | proW → | glycine betaine transporter subunit |
| RA | 2,809,581 | G→A | 94.7% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,819,255 | A→G | 5.9% | T471T (ACT→ACC) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,852,710 | G→T | 10.8% | L253L (CTG→CTT) | hypE → | carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 2,909,021 | G→A | 13.8% | N107N (AAC→AAT) | mazG ← | nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,953,553 | C→T | 10.1% | V369V (GTG→GTA) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,953,559 | A→G | 9.2% | G367G (GGT→GGC) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,953,568 | G→A | 7.7% | S364S (AGC→AGT) | recB ← | exonuclease V (RecBCD complex), beta subunit |
| RA | 2,955,260 | C→T | 8.9% | V761I (GTA→ATA) | ptr ← | protease III |
| RA | 2,955,291 | G→A | 9.5% | A750A (GCC→GCT) | ptr ← | protease III |
| RA | 2,982,097 | A→G | 9.8% | H228H (CAT→CAC) | kduI ← | predicted 5‑keto 4‑deoxyuronate isomerase |
| RA | 2,982,115 | C→T | 10.1% | Q222Q (CAG→CAA) | kduI ← | predicted 5‑keto 4‑deoxyuronate isomerase |
| RA | 3,013,011 | C→T | 7.0% | D235N (GAC→AAC) | yqeC ← | conserved hypothetical protein |
| RA | 3,020,886 | A→G | 7.9% | E305E (GAA→GAG) | xdhD → | fused predicted xanthine/hypoxanthine oxidase, molybdopterin‑binding subunit and Fe‑S binding subunit |
| RA | 3,035,613 | G→A | 9.1% | P384S (CCG→TCG) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,085,574 | C→T | 12.7% | N71N (AAC→AAT) | metK → | methionine adenosyltransferase 1 |
| RA | 3,115,678 | A→T | 8.3% | R697R (CGT→CGA) | yghJ ← | predicted inner membrane lipoprotein |
| RA | 3,130,490 | A→G | 9.4% | F192S (TTT→TCT) | yghQ ← | predicted inner membrane protein |
| RA | 3,170,237 | C→T | 13.3% | R366R (CGC→CGT) | qseC → | sensory histidine kinase in two‑component regulatory system with QseB |
| RA | 3,177,041 | T→C | 10.3% | L91L (TTG→CTG) | tolC → | transport channel |
| RA | 3,237,592 | G→A | 13.2% | V119V (GTG→GTA) | alx → | predicted inner membrane protein, part of terminus |
| RA | 3,241,035 | G→A | 6.3% | C312C (TGC→TGT) | uxaA ← | altronate hydrolase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,264,126 | T→C | 6.0% | E249E (GAA→GAG) | tdcC ← | L‑threonine/L‑serine transporter |
| RA | 3,285,692 | A→G | 17.6% | G120G (GGA→GGG) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| RA | 3,285,704 | A→G | 21.4% | S124S (TCA→TCG) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| RA | 3,285,713 | C→T | 24.2% | S127S (AGC→AGT) | agaD → | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| RA | 3,331,382 | G→T | 21.4% | R76R (CGC→CGA) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,331,391 | G→A | 27.2% | G73G (GGC→GGT) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,331,394 | A→G | 25.0% | N72N (AAT→AAC) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,334,786 | Δ1 bp | 5.8% | coding (23/279 nt) | sfsB → | DNA‑binding transcriptional regulator |
| RA | 3,400,385 | A→G | 6.5% | S186S (TCT→TCC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,403 | A→G | 6.4% | G180G (GGT→GGC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,422,503 | A→G | 7.4% | V71V (GTA→GTG) | yhdZ → | predicted amino‑acid transporter subunit |
| RA | 3,440,923 | T→C | 19.2% | S114S (AGT→AGC) | thiC → | thiamin (pyrimidine moiety) biosynthesis protein |
| RA | 3,448,059 | T→C | 10.0% | P1091P (CCA→CCG) | rpoC ← | RNA polymerase, beta prime subunit |
| RA | 3,452,623 | G→A | 18.0% | G938G (GGC→GGT) | rpoB ← | RNA polymerase, beta subunit |
| RA | 3,452,626 | A→C | 25.5% | D937E (GAT→GAG) | rpoB ← | RNA polymerase, beta subunit |
| RA | 3,521,980 | C→T | 6.0% | G293G (GGC→GGT) | glpX → | fructose 1,6‑bisphosphatase II |
| RA | 3,522,004 | G→C | 6.8% | A301A (GCG→GCC) | glpX → | fructose 1,6‑bisphosphatase II |
| RA | 3,522,007 | T→C | 6.7% | T302T (ACT→ACC) | glpX → | fructose 1,6‑bisphosphatase II |
| RA | 3,534,326 | A→T | 7.0% | T222T (ACT→ACA) | kdgT ← | 2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 3,534,338 | C→T | 8.9% | V218V (GTG→GTA) | kdgT ← | 2‑keto‑3‑deoxy‑D‑gluconate transporter |
| RA | 3,578,721 | T→C | 8.6% | T25T (ACT→ACC) | glnA → | glutamine synthetase |
| RA | 3,603,753 | T→C | 7.8% | H146R (CAT→CGT) ‡ | yigZ ← | predicted elongation factor |
| RA | 3,603,754 | G→T | 7.6% | H146N (CAT→AAT) ‡ | yigZ ← | predicted elongation factor |
| RA | 3,657,703 | T→C | 7.8% | V126V (GTA→GTG) | wzyE ← | predicted Wzy protein involved in ECA polysaccharide chain elongation |
| RA | 3,657,709 | C→A | 8.9% | A124A (GCG→GCT) | wzyE ← | predicted Wzy protein involved in ECA polysaccharide chain elongation |
| RA | 3,657,715 | A→G | 8.8% | G122G (GGT→GGC) | wzyE ← | predicted Wzy protein involved in ECA polysaccharide chain elongation |
| RA | 3,672,802 | A→G | 6.8% | A117A (GCA→GCG) | gpp → | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,674,367 | T→C | 6.4% | E546E (GAA→GAG) | rep ← | DNA helicase and single‑stranded DNA‑dependent ATPase |
| RA | 3,714,841 | T→C | 8.6% | G70G (GGT→GGC) | atpB → | F0 sector of membrane‑bound ATP synthase, subunit a |
| RA | 3,716,825 | C→A | 9.1% | intergenic (+12/‑1) | atpH → / → atpA | F1 sector of membrane‑bound ATP synthase, delta subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| MC JC | 3,750,593 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,800,283 | C→G | 5.6% | intergenic (‑81/‑141) | yicS ← / → nlpA | hypothetical protein/cytoplasmic membrane lipoprotein‑28 |
| RA | 3,800,285 | C→T | 5.7% | intergenic (‑83/‑139) | yicS ← / → nlpA | hypothetical protein/cytoplasmic membrane lipoprotein‑28 |
| RA | 3,800,287 | C→T | 5.7% | intergenic (‑85/‑137) | yicS ← / → nlpA | hypothetical protein/cytoplasmic membrane lipoprotein‑28 |
| RA | 3,804,808 | C→A | 6.7% | G107G (GGC→GGA) | yicJ → | predicted transporter |
| RA | 3,804,817 | C→T | 6.5% | I110I (ATC→ATT) | yicJ → | predicted transporter |
| RA | 3,805,429 | C→T | 8.6% | P314P (CCC→CCT) | yicJ → | predicted transporter |
| RA | 3,805,447 | T→C | 8.0% | T320T (ACT→ACC) | yicJ → | predicted transporter |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,858,954 | T→C | 6.9% | T83T (ACA→ACG) | yibK ← | predicted rRNA methylase |
| RA | 3,924,649 | T→C | 7.0% | S191S (TCT→TCC) | bisC → | biotin sulfoxide reductase |
| RA | 3,930,256 | T→A | 5.8% | A105A (GCT→GCA) | eptB → | predicted metal dependent hydrolase |
| RA | 3,946,443 | T→C | 10.2% | D421D (GAT→GAC) | bcsA → | cellulose synthase, catalytic subunit |
| RA | 3,964,464 | C→A | 10.2% | A390S (GCG→TCG) | yhjE ← | predicted transporter |
| RA | 3,977,925 | T→C | 7.5% | L693L (CTA→CTG) | mdtF ← | multidrug transporter, RpoS‑dependent |
| RA | 3,977,928 | T→C | 8.5% | K692K (AAA→AAG) | mdtF ← | multidrug transporter, RpoS‑dependent |
| RA | 3,993,744 | T→G | 9.2% | V125V (GTA→GTC) | gor ← | glutathione oxidoreductase |
| RA | 3,993,747 | C→T | 9.1% | E124E (GAG→GAA) | gor ← | glutathione oxidoreductase |
| RA | 3,993,750 | C→A | 9.1% | L123L (CTG→CTT) ‡ | gor ← | glutathione oxidoreductase |
| RA | 3,993,752 | G→T | 8.0% | L123M (CTG→ATG) ‡ | gor ← | glutathione oxidoreductase |
| RA | 3,993,753 | C→G | 7.9% | T122T (ACG→ACC) | gor ← | glutathione oxidoreductase |
| RA | 4,039,152 | T→C | 9.8% | Y274Y (TAT→TAC) | ftsX → | predicted transporter subunit |
| RA | 4,041,961 | C→T | 6.5% | intergenic (+99/+89) | livJ → / ← yhhK | leucine/isoleucine/valine transporter subunit/conserved hypothetical protein |
| RA | 4,041,983 | A→G | 7.1% | intergenic (+121/+67) | livJ → / ← yhhK | leucine/isoleucine/valine transporter subunit/conserved hypothetical protein |
| RA | 4,077,892 | G→A | 16.2% | R171R (CGC→CGT) | glpD ← | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 4,077,898 | C→A | 14.9% | R169R (CGG→CGT) | glpD ← | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 4,077,913 | G→A | 15.7% | G164G (GGC→GGT) | glpD ← | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 4,080,396 | T→C | 10.2% | I195I (ATT→ATC) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,080,432 | T→C | 8.5% | D207D (GAT→GAC) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,080,438 | G→A | 5.9% | S209S (TCG→TCA) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,080,456 | G→A | 6.1% | A215A (GCG→GCA) | glpR → | DNA‑binding transcriptional repressor |
| RA | 4,095,396 | G→T | 16.1% | S47S (TCC→TCA) | gntX ← | gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system |
| RA | 4,096,796 | G→A | 6.4% | S152S (TCC→TCT) | yhgA ← | predicted transposase |
| RA | 4,110,393 | A→G | 8.2% | N84N (AAT→AAC) | hslO ← | heat shock protein Hsp33 |
| RA | 4,174,520 | T→G | 8.6% | Y119S (TAT→TCT) | gspO ← | bifunctional prepilin leader peptidase and methylase |
| RA | 4,217,050 | A→G | 11.1% | A75A (GCA→GCG) | yjaA → | conserved hypothetical protein |
| RA | 4,258,286 | T→A | 8.8% | T591T (ACA→ACT) | plsB ← | glycerol‑3‑phosphate O‑acyltransferase |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,317,099 | A→C | 9.5% | V191V (GTT→GTG) | rpiR ← | DNA‑binding transcriptional repressor |
| RA | 4,317,126 | G→A | 6.4% | S182S (TCC→TCT) | rpiR ← | DNA‑binding transcriptional repressor |
| RA | 4,347,163 | A→G | 10.0% | P191P (CCA→CCG) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,375,910 | T→C | 8.2% | N68N (AAT→AAC) | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| RA | 4,379,696 | C→T | 11.7% | R215H (CGT→CAT) | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,698 | G→T | 11.5% | A214A (GCC→GCA) ‡ | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,700 | C→A | 11.0% | A214S (GCC→TCC) ‡ | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,706 | A→G | 12.5% | C212R (TGC→CGC) | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,719 | C→A | 13.6% | E207D (GAG→GAT) | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,722 | G→T | 14.2% | T206T (ACC→ACA) | yjeK ← | predicted lysine aminomutase |
| RA | 4,379,728 | A→G | 13.6% | R204R (CGT→CGC) | yjeK ← | predicted lysine aminomutase |
| RA | 4,436,156 | A→G | 6.6% | I170I (ATT→ATC) | ytfE ← | predicted regulator of cell morphogenesis and cell wall metabolism |
| RA | 4,437,511 | G→A | 7.8% | L79L (CTC→CTT) | ytfF ← | predicted inner membrane protein |
| RA | 4,437,526 | A→G | 7.6% | T74T (ACT→ACC) | ytfF ← | predicted inner membrane protein |
| RA | 4,539,890 | T→C | 5.6% | M65T (ATG→ACG) | yjhR → | predicted frameshift suppressor |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,563,924 | C→T | 14.3% | A95A (GCG→GCA) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,563,936 | G→A | 16.6% | R91R (CGC→CGT) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,563,944 | G→A | 12.8% | L89L (CTA→TTA) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,597,394 | C→T | 9.0% | R352R (CGC→CGT) | tsr → | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 164566 | 164612 | 47 | 5 [2] | [4] 5 | hrpB/mrcB | predicted ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | * | ÷ | W3110S.gb | 422766 | 422801 | 36 | 7 [4] | [3] 5 | malZ | maltodextrin glucosidase |
| * | * | ÷ | W3110S.gb | 511881 | 511892 | 12 | 5 [1] | [2] 6 | ybaT | predicted transporter |
| * | * | ÷ | W3110S.gb | 573868–575008 | 575761 | 754–1894 | 5 [4] | [4] 7 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 575791 | 575999 | 209 | 7 [3] | [1] 104 | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
| * | * | ÷ | W3110S.gb | 598781 | 598816 | 36 | 5 [2] | [3] 5 | cusA | copper/silver efflux system, membrane component |
| * | * | ÷ | W3110S.gb | 721525 | 721540 | 16 | 5 [3] | [4] 6 | kdpE | DNA‑binding response regulator in two‑component regulatory system with KdpD |
| * | * | ÷ | W3110S.gb | 907980 | 908012 | 33 | 6 [4] | [4] 8 | ybjT | conserved hypothetical protein with NAD(P)‑binding Rossmann‑fold domain |
| * | * | ÷ | W3110S.gb | 1421314 | 1421332 | 19 | 5 [4] | [4] 9 | ydaG/racR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| * | * | ÷ | W3110S.gb | 2041777 | 2041799 | 23 | 6 [4] | [4] 5 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2296385 | 2296398 | 14 | 6 [3] | [2] 5 | ccmF | heme lyase, CcmF subunit |
| * | * | ÷ | W3110S.gb | 2569117 | 2569136 | 20 | 5 [3] | [4] 6 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 2827391 | 2827408 | 18 | 5 [4] | [2] 5 | gutM | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 4213635–4216697 | 4216697 | 1–3063 | 5 [4] | [3] 6 | [rrlE]–[rrfE] | [rrlE],[rrfE] |
| * | * | ÷ | W3110S.gb | 4401133 | 4401186 | 54 | 5 [3] | [4] 5 | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 50 (1.250) | 620 (19.940) +CGCGTACAACT |
80/78 | NT | 93.4% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 63 (1.580) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 46 (1.150) | 267 (9.300) +AGGGTCCCTAAGTC |
66/72 | NT | 92.5% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 14 (0.350) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | 205097 = | 34 (0.850) | 65 (2.200) +TTATAACATTTTA |
20/74 | NT | 65.1% | intergenic (+8/‑29) | rnhB/dnaE | ribonuclease HII, degrades RNA of DNA‑RNA hybrids/DNA polymerase III alpha subunit |
| ? | W3110S.gb | 4139149 = | 60 (1.510) | coding (2/1023 nt) | frlB | fructoselysine‑6‑P‑deglycase | |||||
| * | ? | W3110S.gb | = 230556 | 47 (1.180) | 14 (0.440) +CTCCTCAGCC |
8/80 | NT | 34.3% | coding (326/915 nt) | yafC | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 1313528 = | 20 (0.500) | intergenic (+6/+34) | tonB/yciA | membrane spanning protein in TonB‑ExbB‑ExbD complex/predicted hydrolase | |||||
| * | ? | W3110S.gb | = 236798 | 28 (0.700) | 254 (13.850) +27 bp |
50/46 | NT | 94.2% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 40 (1.000) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 51 (1.280) | 24/100 | NT | 98.1% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 1 (0.030) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 69 (1.730) | 31/100 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 38 (0.950) | 26/100 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 713380 = | 28 (0.700) | 486 (13.250) | 88/92 | NT | 94.6% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 30 (0.820) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 56 (1.400) | 755 (18.940) | 95/100 | NT | 92.0% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 75 (1.880) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 1209367 = | 11 (0.280) | 15 (0.550) | 11/68 | NT | 66.0% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 8 (0.300) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 11 (0.280) | 17 (0.630) | 12/68 | NT | 68.7% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 8 (0.300) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1668933 | 19 (0.480) | 3 (0.080) | 3/90 | NT | 12.7% | coding (1/696 nt) | ynfK | predicted dethiobiotin synthetase |
| ? | W3110S.gb | = 1668949 | 24 (0.670) | intergenic (‑16/+109) | ynfK/dgsA | predicted dethiobiotin synthetase/DNA‑binding transcriptional repressor | |||||
| * | ? | W3110S.gb | 2018571 = | 3 (0.080) | 40 (1.070) | 23/94 | NT | 93.4% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 4 (0.100) | 33 (0.860) | 21/96 | NT | 89.6% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | = 2107291 | 64 (1.610) | 128 (3.280) +A |
24/98 | NT | 71.3% | coding (904/993 nt) | wbbI | conserved hypothetical protein |
| ? | W3110S.gb | = 2809956 | 41 (1.030) | coding (531/531 nt) | mprA | DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 54 (1.380) | 36/98 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 56 (1.460) | 35/96 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 76 (1.950) | 41/98 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 47 (1.180) | 23/100 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 63 (1.580) | 36/100 | NT | 94.0% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 4 (0.100) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 2549829 = | 23 (0.580) | 15 (0.450) +CAACTAAA |
3/84 | NT | 35.1% | coding (241/792 nt) | ucpA | predicted oxidoredutase, sulfate metabolism protein |
| ? | W3110S.gb | = 3452629 | 43 (1.080) | coding (2808/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
| * | ? | W3110S.gb | 2691202 = | 14 (0.350) | 7 (0.210) +GTCAGTTC |
3/84 | NT | 19.2% | coding (2998/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | W3110S.gb | 2980369 = | 56 (1.400) | coding (470/1419 nt) | araE | arabinose transporter | |||||
| * | ? | W3110S.gb | 3748799 = | 9 (0.230) | 65 (1.630) | 38/100 | NT | 87.8% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | 4547364 = | 40 (1.000) | 8 (0.240) | 7/82 | NT | 19.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 34 (1.040) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 45 (1.130) | 6 (0.180) | 5/82 | NT | 14.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 34 (1.040) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||