mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 17,860 | C→T | 8.5% | N239N (AAC→AAT) | dacA → | D‑alanyl‑D‑alanine carboxypeptidase |
| RA | 132,186 | A→G | 94.7% | D560G (GAC→GGC) | fusA → | elongation factor G |
| RA | 237,732 | T→C | 5.0% | V56A (GTT→GCT) | EO946_RS01345 → | YbeF family protein |
| RA | 240,198 | G→T | 12.0% | Q112K (CAA→AAA) | EO946_RS01360 ← | hypothetical protein |
| RA | 296,608 | C→G | 6.0% | A201A (GCC→GCG) | EO946_RS01660 → | DUF4901 domain‑containing protein |
| RA | 344,548 | T→C | 5.2% | Y132Y (TAT→TAC) | putR → | proline utilization transcriptional regulator PutR |
| RA | 344,557 | T→C | 5.2% | S135S (TCT→TCC) | putR → | proline utilization transcriptional regulator PutR |
| RA | 344,560 | T→C | 5.2% | F136F (TTT→TTC) | putR → | proline utilization transcriptional regulator PutR |
| RA | 344,593 | G→A | 5.1% | K147K (AAG→AAA) | putR → | proline utilization transcriptional regulator PutR |
| RA | 344,594 | C→T | 5.0% | L148L (CTG→TTG) | putR → | proline utilization transcriptional regulator PutR |
| RA | 344,599 | G→A | 5.1% | K149K (AAG→AAA) | putR → | proline utilization transcriptional regulator PutR |
| RA | 417,261 | T→A | 6.7% | L58L (CTA→CTT) | EO946_RS02145 ← | hypothetical protein |
| RA | 417,267 | G→T | 5.3% | F56L (TTC→TTA) | EO946_RS02145 ← | hypothetical protein |
| RA | 438,588 | C→G | 5.8% | L49L (CTG→CTC) | gabR ← | transcriptional regulator GabR |
| RA | 438,591 | C→A | 5.8% | K48N (AAG→AAT) | gabR ← | transcriptional regulator GabR |
| RA | 438,594 | C→T | 5.6% | E47E (GAG→GAA) | gabR ← | transcriptional regulator GabR |
| RA | 438,597 | G→A | 5.3% | A46A (GCC→GCT) | gabR ← | transcriptional regulator GabR |
| RA | 480,215 | T→A | 5.5% | P116P (CCT→CCA) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 480,218 | C→T | 5.7% | N117N (AAC→AAT) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 480,221 | C→A | 5.7% | A118A (GCC→GCA) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 480,230 | C→A | 5.7% | G121G (GGC→GGA) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 480,245 | G→T | 5.4% | L126L (CTG→CTT) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 480,287 | A→G | 6.0% | V140V (GTA→GTG) | EO946_RS02465 → | glycosyltransferase family 2 protein |
| RA | 506,292 | G→C | 5.6% | V277V (GTG→GTC) | EO946_RS02595 → | cation diffusion facilitator family transporter |
| RA | 523,388 | G→A | 5.3% | A228A (GCG→GCA) | EO946_RS02705 → | RNA‑binding transcriptional accessory protein |
| RA | 523,472 | G→A | 5.2% | Q256Q (CAG→CAA) | EO946_RS02705 → | RNA‑binding transcriptional accessory protein |
| RA | 523,484 | C→T | 5.2% | N260N (AAC→AAT) | EO946_RS02705 → | RNA‑binding transcriptional accessory protein |
| RA | 607,359 | A→C | 8.3% | T68P (ACC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,638 | G→C | 12.0% | A161P (GCC→CCC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,688 | A→G | 10.0% | G177G (GGA→GGG) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,694 | C→T | 16.4% | T179T (ACC→ACT) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,700 | A→C | 30.6% | E181D (GAA→GAC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,702 | C→T | 19.6% | A182V (GCC→GTC) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,838 | A→G | 18.1% | T227T (ACA→ACG) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,847 | G→A | 12.2% | T230T (ACG→ACA) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,853 | C→T | 11.3% | A232A (GCC→GCT) | EO946_RS03185 → | collagen‑like protein |
| RA | 607,856 | A→T | 12.0% | T233T (ACA→ACT) | EO946_RS03185 → | collagen‑like protein |
| RA | 704,348 | Δ1 bp | 100% | intergenic (+170/‑14) | EO946_RS03650 → / → EO946_RS03655 | CamS family sex pheromone protein/phosphotransferase enzyme family protein |
| RA | 751,369 | A→T | 5.8% | L187L (CTA→CTT) | EO946_RS03865 → | YesL family protein |
| RA | 751,373 | A→T | 5.7% | M189L (ATG→TTG) | EO946_RS03865 → | YesL family protein |
| RA | 751,390 | C→T | 5.2% | L194L (CTC→CTT) | EO946_RS03865 → | YesL family protein |
| RA | 751,393 | A→G | 5.2% | R195R (AGA→AGG) | EO946_RS03865 → | YesL family protein |
| RA | 765,082 | T→C | 5.2% | M265T (ATG→ACG) | lplD → | alpha‑galacturonidase LplD |
| RA | 765,087 | A→G | 5.3% | S267G (AGC→GGC) | lplD → | alpha‑galacturonidase LplD |
| RA | 767,723 | A→C | 5.4% | I81S (ATT→AGT) | EO946_RS03930 ← | hypothetical protein |
| RA | 779,147 | C→T | 5.1% | I40I (ATC→ATT) | EO946_RS03975 → | glucose‑1‑phosphate cytidylyltransferase |
| RA | 828,787 | G→A | 100% | E77K (GAA→AAA) | treC → | alpha,alpha‑phosphotrehalase |
| RA | 892,039 | T→C | 6.0% | L230L (CTT→CTC) | EO946_RS04510 → | iron ABC transporter permease |
| RA | 892,051 | G→A | 5.8% | T234T (ACG→ACA) | EO946_RS04510 → | iron ABC transporter permease |
| RA | 892,896 | A→G | 5.4% | P183P (CCA→CCG) | EO946_RS04515 → | iron ABC transporter permease |
| RA | 892,903 | A→C | 5.8% | R186R (AGA→CGA) | EO946_RS04515 → | iron ABC transporter permease |
| RA | 892,908 | G→A | 5.2% | A187A (GCG→GCA) | EO946_RS04515 → | iron ABC transporter permease |
| RA | 892,929 | T→C | 6.7% | I194I (ATT→ATC) | EO946_RS04515 → | iron ABC transporter permease |
| RA | 892,932 | C→T | 6.5% | T195T (ACC→ACT) | EO946_RS04515 → | iron ABC transporter permease |
| RA | 1,013,969 | C→A | 5.4% | D70Y (GAT→TAT) | EO946_RS05230 ← | polysaccharide deacetylase |
| RA | 1,061,263 | T→C | 7.1% | S130S (TCT→TCC) | hemY → | protoporphyrinogen oxidase |
| RA | 1,061,272 | A→G | 7.0% | A133A (GCA→GCG) | hemY → | protoporphyrinogen oxidase |
| RA | 1,061,275 | G→A | 7.2% | R134R (AGG→AGA) | hemY → | protoporphyrinogen oxidase |
| RA | 1,061,278 | C→T | 7.4% | A135A (GCC→GCT) | hemY → | protoporphyrinogen oxidase |
| RA | 1,061,293 | T→C | 7.3% | I140I (ATT→ATC) | hemY → | protoporphyrinogen oxidase |
| RA | 1,196,397 | A→G | 5.0% | K110K (AAA→AAG) | EO946_RS06155 → | GNAT family N‑acetyltransferase |
| RA | 1,268,698 | T→A | 6.4% | intergenic (+8/‑192) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,699 | G→A | 6.1% | intergenic (+9/‑191) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,704 | Δ1 bp | 5.8% | intergenic (+14/‑186) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,707 | G→T | 5.7% | intergenic (+17/‑183) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,709 | A→G | 5.6% | intergenic (+19/‑181) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,722 | T→C | 6.6% | intergenic (+32/‑168) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,268,723 | G→A | 6.6% | intergenic (+33/‑167) | EO946_RS06595 → / → uxaC | NAD(P)/FAD‑dependent oxidoreductase/glucuronate isomerase |
| RA | 1,342,854 | T→C | 5.0% | N67N (AAT→AAC) | hmpA → | NO‑inducible flavohemoprotein |
| RA | 1,365,757 | G→A | 5.0% | S85S (TCG→TCA) | EO946_RS07135 → | PepSY domain‑containing protein |
| RA | 1,365,763 | C→T | 5.2% | N87N (AAC→AAT) | EO946_RS07135 → | PepSY domain‑containing protein |
| RA | 1,397,487 | T→C | 5.1% | V58V (GTT→GTC) | mtnE → | methionine‑glutamine aminotransferase |
| RA | 1,418,373 | T→C | 16.3% | intergenic (+104/‑131) | EO946_RS07425 → / → pfeT | TlpA family protein disulfide reductase/metal‑transporting ATPase PfeT |
| RA | 1,418,376 | T→C | 15.8% | intergenic (+107/‑128) | EO946_RS07425 → / → pfeT | TlpA family protein disulfide reductase/metal‑transporting ATPase PfeT |
| RA | 1,418,378 | C→T | 19.3% | intergenic (+109/‑126) | EO946_RS07425 → / → pfeT | TlpA family protein disulfide reductase/metal‑transporting ATPase PfeT |
| RA | 1,418,381 | A→G | 20.7% | intergenic (+112/‑123) | EO946_RS07425 → / → pfeT | TlpA family protein disulfide reductase/metal‑transporting ATPase PfeT |
| RA | 1,418,409 | G→A | 12.5% | intergenic (+140/‑95) | EO946_RS07425 → / → pfeT | TlpA family protein disulfide reductase/metal‑transporting ATPase PfeT |
| RA | 1,465,903 | T→C | 5.4% | I147I (ATT→ATC) | EO946_RS07670 → | ABC transporter ATP‑binding protein/permease |
| RA | 1,566,216 | A→G | 7.5% | N132D (AAT→GAT) | EO946_RS08175 → | S8 family serine peptidase |
| RA | 1,566,221 | G→A | 6.9% | K133K (AAG→AAA) | EO946_RS08175 → | S8 family serine peptidase |
| RA | 1,659,112 | G→A | 7.1% | G16S (GGC→AGC) | flgB → | flagellar basal body rod protein FlgB |
| RA | 1,684,359 | T→C | 5.2% | D26D (GAT→GAC) | sigD → | RNA polymerase sigma‑28 factor SigD |
| RA | 1,704,957 | A→C | 6.5% | Q94H (CAA→CAC) | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,704,974 | T→A | 6.3% | V100E (GTA→GAA) ‡ | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,704,975 | A→T | 6.0% | V100V (GTA→GTT) ‡ | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,704,987 | G→T | 6.3% | V104V (GTG→GTT) | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,705,005 | T→G | 6.7% | G110G (GGT→GGG) | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,705,023 | T→G | 6.8% | P116P (CCT→CCG) | truB → | tRNA pseudouridine(55) synthase TruB |
| RA | 1,734,397 | T→C | 8.8% | N221N (AAT→AAC) | EO946_RS09000 → | serine hydrolase |
| RA | 1,734,409 | C→T | 8.9% | L225L (CTC→CTT) | EO946_RS09000 → | serine hydrolase |
| RA | 1,734,419 | G→A | 9.5% | V229I (GTA→ATA) ‡ | EO946_RS09000 → | serine hydrolase |
| RA | 1,734,421 | A→T | 8.7% | V229V (GTA→GTT) ‡ | EO946_RS09000 → | serine hydrolase |
| RA | 1,738,217 | A→T | 5.4% | intergenic (+146/‑120) | spoVS → / → tdh | stage V sporulation protein SpoVS/L‑threonine 3‑dehydrogenase |
| RA | 1,754,574 | G→T | 5.7% | R254I (AGA→ATA) ‡ | EO946_RS09090 → | acyltransferase domain‑containing protein |
| RA | 1,754,575 | A→G | 5.7% | R254R (AGA→AGG) ‡ | EO946_RS09090 → | acyltransferase domain‑containing protein |
| RA | 1,759,155 | G→A | 5.1% | L176L (TTG→TTA) | pksG → | polyketide biosynthesis 3‑hydroxy‑3‑methylglutaryl‑ACP synthase PksG |
| RA | 1,759,161 | G→C | 5.7% | G178G (GGG→GGC) | pksG → | polyketide biosynthesis 3‑hydroxy‑3‑methylglutaryl‑ACP synthase PksG |
| RA | 1,759,191 | A→C | 5.5% | P188P (CCA→CCC) | pksG → | polyketide biosynthesis 3‑hydroxy‑3‑methylglutaryl‑ACP synthase PksG |
| RA | 1,761,511 | C→T | 6.1% | T7I (ACC→ATC) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,517 | A→T | 6.0% | N9I (AAT→ATT) ‡ | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,518 | T→A | 6.1% | N9K (AAT→AAA) ‡ | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,522 | G→A | 6.2% | A11T (GCT→ACT) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,539 | C→T | 6.2% | S16S (AGC→AGT) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,540 | T→C | 6.1% | Y17H (TAT→CAT) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,545 | T→G | 6.2% | G18G (GGT→GGG) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,549 | A→C | 6.4% | T20P (ACT→CCT) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,567 | G→A | 8.7% | E26K (GAG→AAG) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,761,581 | G→A | 8.0% | T30T (ACG→ACA) | EO946_RS09125 → | non‑ribosomal peptide synthetase |
| RA | 1,846,125 | G→A | 5.5% | G212G (GGG→GGA) | EO946_RS09265 → | aminotransferase class I/II‑fold pyridoxal phosphate‑dependent enzyme |
| RA | 1,902,254 | A→G | 5.6% | F13F (TTT→TTC) | EO946_RS09605 ← | hypothetical protein |
| RA | 1,902,266 | C→T | 5.6% | A9A (GCG→GCA) | EO946_RS09605 ← | hypothetical protein |
| RA | 1,902,272 | A→C | 5.6% | L7L (CTT→CTG) ‡ | EO946_RS09605 ← | hypothetical protein |
| RA | 1,902,274 | G→A | 5.8% | L7F (CTT→TTT) ‡ | EO946_RS09605 ← | hypothetical protein |
| RA | 1,968,182 | C→A | 16.4% | L85I (CTA→ATA) | EO946_RS09780 → | hypothetical protein |
| RA | 1,995,953 | T→C | 7.4% | I29M (ATA→ATG) | EO946_RS09955 ← | hypothetical protein |
| RA | 2,018,214 | G→T | 6.3% | D283E (GAC→GAA) | proC ← | pyrroline‑5‑carboxylate reductase |
| RA | 2,018,250 | A→T | 5.0% | I271I (ATT→ATA) | proC ← | pyrroline‑5‑carboxylate reductase |
| RA | 2,018,253 | C→T | 5.6% | A270A (GCG→GCA) | proC ← | pyrroline‑5‑carboxylate reductase |
| RA | 2,117,175 | G→T | 5.1% | R535R (CGG→AGG) | EO946_RS10610 ← | nitric oxide reductase activation protein NorD |
| RA | 2,117,179 | C→T | 5.0% | A533A (GCG→GCA) | EO946_RS10610 ← | nitric oxide reductase activation protein NorD |
| RA | 2,117,182 | A→G | 5.1% | Y532Y (TAT→TAC) | EO946_RS10610 ← | nitric oxide reductase activation protein NorD |
| RA | 2,117,185 | G→C | 6.2% | G531G (GGC→GGG) | EO946_RS10610 ← | nitric oxide reductase activation protein NorD |
| RA | 2,135,516 | C→A | 7.9% | A496E (GCA→GAA) | EO946_RS10715 → | sodium:solute symporter |
| RA | 2,145,766 | A→G | 5.1% | L309L (TTG→CTG) | EO946_RS10800 ← | peptidase |
| RA | 2,145,791 | T→A | 5.0% | A300A (GCA→GCT) | EO946_RS10800 ← | peptidase |
| RA | 2,145,803 | T→C | 5.1% | E296E (GAA→GAG) | EO946_RS10800 ← | peptidase |
| RA | 2,154,383 | G→A | 6.1% | L174L (CTA→TTA) | EO946_RS10855 ← | phytase |
| RA | 2,154,419 | G→A | 6.2% | L162L (CTG→TTG) | EO946_RS10855 ← | phytase |
| RA | 2,154,420 | A→G | 6.3% | S161S (AGT→AGC) | EO946_RS10855 ← | phytase |
| RA | 2,165,568 | T→G | 5.1% | E94D (GAA→GAC) | EO946_RS10925 ← | hypothetical protein |
| RA | 2,180,184 | T→C | 6.8% | D18D (GAT→GAC) | sspL → | small, acid‑soluble spore protein L |
| RA | 2,180,226 | A→G | 7.2% | E32E (GAA→GAG) | sspL → | small, acid‑soluble spore protein L |
| RA | 2,180,229 | A→G | 7.2% | E33E (GAA→GAG) | sspL → | small, acid‑soluble spore protein L |
| RA | 2,180,235 | C→A | 5.8% | A35A (GCC→GCA) | sspL → | small, acid‑soluble spore protein L |
| RA | 2,294,428 | G→T | 5.5% | G32G (GGC→GGA) | EO946_RS11665 ← | YpuI family protein |
| RA | 2,301,730 | C→G | 5.3% | G157G (GGG→GGC) | lepB ← | signal peptidase I |
| RA | 2,301,736 | T→A | 5.5% | R155R (CGA→CGT) | lepB ← | signal peptidase I |
| RA | 2,601,897 | T→A | 5.2% | S37S (TCA→TCT) | EO946_RS13465 ← | penicillin‑binding protein 2 |
| RA | 2,611,703 | T→G | 5.1% | intergenic (‑322/+12) | alaS ← / ← EO946_RS13520 | alanine‑‑tRNA ligase/AI‑2E family transporter |
| RA | 2,611,711 | A→G | 5.4% | intergenic (‑330/+4) | alaS ← / ← EO946_RS13520 | alanine‑‑tRNA ligase/AI‑2E family transporter |
| RA | 2,632,070 | G→A | 6.9% | V53V (GTC→GTT) | EO946_RS13615 ← | adenine phosphoribosyltransferase |
| RA | 2,706,418 | G→T | 6.4% | intergenic (‑539/‑278) | ilvB ← / → EO946_RS13980 | acetolactate synthase large subunit/hypothetical protein |
| RA | 2,711,930 | G→T | 7.9% | T127T (ACC→ACA) | EO946_RS14015 ← | ribonuclease PH |
| RA | 2,711,936 | T→A | 7.9% | T125T (ACA→ACT) | EO946_RS14015 ← | ribonuclease PH |
| RA | 2,711,939 | C→T | 7.9% | G124G (GGG→GGA) | EO946_RS14015 ← | ribonuclease PH |
| RA | 2,711,942 | G→T | 7.4% | G123G (GGC→GGA) | EO946_RS14015 ← | ribonuclease PH |
| RA | 2,711,951 | C→T | 8.0% | Q120Q (CAG→CAA) | EO946_RS14015 ← | ribonuclease PH |
| RA | 2,720,740 | G→A | 5.2% | C143C (TGC→TGT) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,720,770 | G→A | 5.3% | V133V (GTC→GTT) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,720,790 | G→T | 5.1% | Q127K (CAA→AAA) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,720,791 | C→T | 5.5% | E126E (GAG→GAA) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,720,830 | G→A | 5.2% | I113I (ATC→ATT) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,720,854 | T→C | 5.5% | E105E (GAA→GAG) | EO946_RS14065 ← | aspartate kinase |
| RA | 2,794,219 | A→C | 5.1% | intergenic (‑101/+64) | icd ← / ← citZ | NADP‑dependent isocitrate dehydrogenase/citrate synthase |
| RA | 2,827,922 | T→C | 7.0% | R329R (CGA→CGG) | thiI ← | tRNA 4‑thiouridine(8) synthase ThiI |
| RA | 2,827,949 | A→G | 8.4% | D320D (GAT→GAC) | thiI ← | tRNA 4‑thiouridine(8) synthase ThiI |
| RA | 2,827,963 | A→G | 7.8% | L316L (TTA→CTA) | thiI ← | tRNA 4‑thiouridine(8) synthase ThiI |
| RA | 2,837,041 | A→G | 5.9% | Y126Y (TAT→TAC) | EO946_RS14635 ← | diguanylate cyclase |
| RA | 2,837,054 | A→T | 7.1% | I122N (ATC→AAC) | EO946_RS14635 ← | diguanylate cyclase |
| RA | 2,901,671 | A→C | 8.7% | K411T (AAA→ACA) | EO946_RS14945 → | extracellular solute‑binding protein |
| RA | 2,917,007 | A→G | 5.6% | D220D (GAT→GAC) | ytrF ← | ABC transporter permease YtrF |
| RA | 2,917,019 | C→T | 5.1% | K216K (AAG→AAA) | ytrF ← | ABC transporter permease YtrF |
| RA | 2,928,089 | T→A | 5.2% | intergenic (‑49/+91) | alaP ← / ← asnB | alanine permease AlaP/asparagine synthase (glutamine‑hydrolyzing) |
| RA | 2,928,096 | G→A | 5.7% | intergenic (‑56/+84) | alaP ← / ← asnB | alanine permease AlaP/asparagine synthase (glutamine‑hydrolyzing) |
| RA | 2,928,097 | T→C | 5.6% | intergenic (‑57/+83) | alaP ← / ← asnB | alanine permease AlaP/asparagine synthase (glutamine‑hydrolyzing) |
| RA | 2,939,941 | C→T | 5.1% | L144L (CTG→CTA) | EO946_RS15145 ← | DNA starvation/stationary phase protection protein |
| RA | 2,945,599 | G→T | 5.3% | intergenic (+26/‑28) | EO946_RS15185 → / → EO946_RS15190 | cytochrome d ubiquinol oxidase subunit II/DUF1540 domain‑containing protein |
| RA | 2,991,252 | C→A | 23.0% | intergenic (+53/‑154) | gbsR → / → bslA | transcriptional regulator GbsR/biofilm‑surface layer protein BslA |
| RA | 2,995,560 | C→T | 5.0% | R10K (AGA→AAA) | lytG ← | exo‑glucosaminidase LytG |
| RA | 2,995,605 | G→A | 5.1% | intergenic (‑17/+143) | lytG ← / ← EO946_RS15510 | exo‑glucosaminidase LytG/MFS transporter |
| RA | 3,012,140 | G→A | 5.3% | intergenic (‑108/+21) | mcpA ← / ← tlpA | methyl‑accepting chemotaxis protein/methyl‑accepting chemotaxis protein TlpA |
| RA | 3,036,047 | T→C | 8.0% | H10H (CAT→CAC) | kinB → | sporulation sensor histidine kinase KinB |
| RA | 3,036,077 | C→T | 5.9% | L20L (CTC→CTT) | kinB → | sporulation sensor histidine kinase KinB |
| RA | 3,036,101 | G→A | 5.2% | K28K (AAG→AAA) | kinB → | sporulation sensor histidine kinase KinB |
| RA | 3,036,104 | G→T | 5.2% | P29P (CCG→CCT) | kinB → | sporulation sensor histidine kinase KinB |
| RA | 3,036,110 | C→T | 5.2% | I31I (ATC→ATT) | kinB → | sporulation sensor histidine kinase KinB |
| RA | 3,122,377 | A→G | 5.3% | intergenic (‑34/+134) | EO946_RS16130 ← / ← cotNH | homoserine dehydrogenase/spore coat‑associated protein CotNH |
| RA | 3,122,395 | C→T | 5.7% | intergenic (‑52/+116) | EO946_RS16130 ← / ← cotNH | homoserine dehydrogenase/spore coat‑associated protein CotNH |
| RA | 3,180,566 | C→T | 6.1% | intergenic (‑48/‑127) | EO946_RS16450 ← / → EO946_RS16455 | 3‑hydroxyacyl‑CoA dehydrogenase/enoyl‑CoA hydratase family protein/YuzL family protein |
| RA | 3,180,581 | T→C | 6.4% | intergenic (‑63/‑112) | EO946_RS16450 ← / → EO946_RS16455 | 3‑hydroxyacyl‑CoA dehydrogenase/enoyl‑CoA hydratase family protein/YuzL family protein |
| RA | 3,180,614 | C→T | 5.4% | intergenic (‑96/‑79) | EO946_RS16450 ← / → EO946_RS16455 | 3‑hydroxyacyl‑CoA dehydrogenase/enoyl‑CoA hydratase family protein/YuzL family protein |
| RA | 3,180,654 | T→C | 5.8% | intergenic (‑136/‑39) | EO946_RS16450 ← / → EO946_RS16455 | 3‑hydroxyacyl‑CoA dehydrogenase/enoyl‑CoA hydratase family protein/YuzL family protein |
| RA | 3,180,663 | A→T | 6.0% | intergenic (‑145/‑30) | EO946_RS16450 ← / → EO946_RS16455 | 3‑hydroxyacyl‑CoA dehydrogenase/enoyl‑CoA hydratase family protein/YuzL family protein |
| RA | 3,212,247 | C→T | 6.0% | A129A (GCG→GCA) | EO946_RS16630 ← | ABC transporter substrate‑binding protein |
| RA | 3,212,268 | A→G | 5.3% | A122A (GCT→GCC) | EO946_RS16630 ← | ABC transporter substrate‑binding protein |
| RA | 3,212,271 | A→C | 5.3% | L121L (CTT→CTG) | EO946_RS16630 ← | ABC transporter substrate‑binding protein |
| RA | 3,247,065 | C→T | 100% | intergenic (‑11/+110) | bdbD ← / ← cadA | disulfide bond formation protein BdbD/cadmium‑translocating P‑type ATPase |
| RA | 3,285,491 | T→C | 5.4% | I304V (ATT→GTT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,567 | C→T | 28.1% | L278L (CTG→CTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,575 | T→G | 27.9% | N276H (AAT→CAT) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,580 | A→G | 31.5% | I274T (ATA→ACA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,647 | C→A | 31.5% | V252L (GTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,285,713 | G→A | 22.7% | L230L (CTA→TTA) | EO946_RS16995 ← | IS3 family transposase |
| RA | 3,308,421 | A→G | 8.8% | G194G (GGT→GGC) | EO946_RS17110 ← | glycosyl hydrolase family 18 protein |
| RA | 3,308,465 | G→T | 5.8% | Q180K (CAA→AAA) | EO946_RS17110 ← | glycosyl hydrolase family 18 protein |
| RA | 3,328,444 | A→G | 6.2% | Q99Q (CAA→CAG) | lutP → | L‑lactate permease LutP |
| RA | 3,328,453 | T→C | 6.6% | I102I (ATT→ATC) | lutP → | L‑lactate permease LutP |
| RA | 3,340,444 | G→A | 6.1% | L66L (CTG→TTG) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,448 | T→C | 6.4% | T64T (ACA→ACG) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,457 | T→C | 7.1% | Q61Q (CAA→CAG) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,477 | T→G | 5.7% | R55R (AGA→CGA) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,478 | G→A | 5.6% | Y54Y (TAC→TAT) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,481 | A→G | 5.5% | R53R (CGT→CGC) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,484 | A→G | 5.4% | L52L (CTT→CTC) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,340,490 | C→T | 5.1% | S50S (TCG→TCA) | epsG ← | biofilm exopolysaccharide biosynthesis protein EpsG |
| RA | 3,523,093 | C→G | 5.1% | G143G (GGG→GGC) | EO946_RS18120 ← | CotH kinase family protein |
| RA | 3,523,104 | A→G | 5.0% | L140L (TTG→CTG) | EO946_RS18120 ← | CotH kinase family protein |
| RA | 3,523,109 | T→C | 5.9% | K138R (AAG→AGG) | EO946_RS18120 ← | CotH kinase family protein |
| RA | 3,523,124 | A→T | 5.4% | F133Y (TTT→TAT) | EO946_RS18120 ← | CotH kinase family protein |
| RA | 3,564,437 | T→A | 5.0% | S265S (TCT→TCA) | EO946_RS21110 → | histidine kinase |
| RA | 3,564,446 | C→T | 5.5% | F268F (TTC→TTT) | EO946_RS21110 → | histidine kinase |
| RA | 3,668,421 | A→T | 5.4% | M330L (ATG→TTG) | EO946_RS18875 → | insulinase family protein |
| RA | 3,668,429 | T→G | 5.0% | L332L (CTT→CTG) | EO946_RS18875 → | insulinase family protein |
| RA | 3,668,450 | G→T | 5.4% | G339G (GGG→GGT) | EO946_RS18875 → | insulinase family protein |
| RA | 3,668,453 | T→A | 5.1% | L340L (CTT→CTA) | EO946_RS18875 → | insulinase family protein |
| RA | 3,746,846 | C→G | 5.4% | G74G (GGG→GGC) | EO946_RS19275 ← | galactokinase |
| RA | 3,746,850 | A→G | 5.8% | V73A (GTA→GCA) | EO946_RS19275 ← | galactokinase |
| RA | 3,746,856 | T→C | 6.3% | K71R (AAA→AGA) | EO946_RS19275 ← | galactokinase |
| RA | 3,746,864 | G→A | 6.4% | D68D (GAC→GAT) | EO946_RS19275 ← | galactokinase |
| RA | 3,746,884 | C→G | 6.2% | V62L (GTT→CTT) | EO946_RS19275 ← | galactokinase |
| RA | 3,991,699 | T→C | 29.0% | K46E (AAA→GAA) | walH ← | WalRK two‑component regulatory system regulator WalH |
| RA | 4,022,624 | G→C | 10.3% | A616P (GCC→CCC) | EO946_RS20675 → | thioredoxin domain‑containing protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP034943 | 2356246 | 2356443 | 198 | 37 [35] | [35] 39 | [gndA]–[EO946_RS12045] | [gndA],[EO946_RS12045] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP034943 | = 91969 | NA (NA) | 11 (0.080) | 4/250 | NT | NA | intergenic (+131/‑39) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NZ_CP034943 | 91973 = | NA (NA) | intergenic (+135/‑35) | EO946_RS00485/EO946_RS00490 | 16S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | NZ_CP034943 | 607524 = | 89 (0.610) | 18 (0.140) +GGCTGGTCCGACGTCC |
6/220 | NT | 12.8% | coding (367/1125 nt) | EO946_RS03185 | collagen‑like protein |
| ? | NZ_CP034943 | = 607858 | 191 (1.310) | coding (701/1125 nt) | EO946_RS03185 | collagen‑like protein | |||||